AlfalfaGEDB | Msa0547170

M. sativa cultivar zhongmu-4 / Msa0547170

KEGG: K09338
GO: GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF08670.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547170	KAG4979830.1	92.105	152	12	0	1	152	652	803	1.46e-93	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547170	sp\|Q9SE43\|REV_ARATH	66.842	190	25	2	1	152	653	842	1.68e-77	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547170	A0A072UK13	80.108	186	3	1	1	152	661	846	6.93e-93	296

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0547170	0.807567	4.745724e-50	-8.615850e-47
Msa0001940	Msa0547170	0.805892	1.071954e-49	-8.615850e-47
Msa0009180	Msa0547170	0.808179	3.516670e-50	-8.615850e-47
Msa0031340	Msa0547170	0.805253	1.459634e-49	-8.615850e-47
Msa0051020	Msa0547170	0.804543	2.053938e-49	-8.615850e-47
Msa0052680	Msa0547170	0.806045	9.951061e-50	-8.615850e-47
Msa0052730	Msa0547170	0.813509	2.469244e-51	-8.615850e-47
Msa0061340	Msa0547170	0.809088	2.249289e-50	-8.615850e-47
Msa0079380	Msa0547170	0.803228	3.852696e-49	-8.615850e-47
Msa0081520	Msa0547170	0.803660	3.136073e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547170	MtrunA17_Chr4g0028991	80.108	186	3	1	1	152	661	846	1.33e-96	296
Msa0547170	MtrunA17_Chr2g0326731	65.054	186	30	2	1	152	655	839	9.48e-74	235
Msa0547170	MtrunA17_Chr2g0292391	56.383	188	45	2	1	152	650	836	5.91e-63	206
Msa0547170	MtrunA17_Chr8g0340411	53.763	186	51	2	1	152	648	832	9.09e-60	197
Msa0547170	MtrunA17_Chr3g0140351	52.174	184	55	2	1	152	653	835	1.95e-59	197
Msa0547170	MtrunA17_Chr2g0331131	53.226	186	52	2	1	152	652	836	3.39e-59	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0547170	AT5G60690.1	66.842	190	25	2	1	152	653	842	1.70e-78	248
Msa0547170	AT1G52150.2	56.989	186	45	2	1	152	653	837	3.87e-64	210
Msa0547170	AT1G52150.1	56.989	186	45	2	1	152	652	836	3.99e-64	210
Msa0547170	AT2G34710.1	52.604	192	46	4	1	152	666	852	7.42e-57	190
Msa0547170	AT1G30490.1	51.053	190	49	3	1	152	658	841	3.11e-55	186
Msa0547170	AT4G32880.1	52.973	185	52	4	1	152	651	833	2.81e-54	183
Msa0547170	AT1G52150.3	53.285	137	30	1	1	103	652	788	6.69e-39	139

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Find 49 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTGGCACCAACAGCT+GGG	0.574992	4_1:+39952321	None:intergenic
AACCACCTGTTGCATTAACT+TGG	0.435864	4_1:+39951776	None:intergenic
AAGCAGTTACACTAGCTCAA+TGG	0.520279	4_1:-39952283	Msa0547170:CDS
AATCAATGATAAATTTGAAG+GGG	0.613068	4_1:-39951491	Msa0547170:three_prime_UTR
AATCTAATTAAATGCAAACT+TGG	0.478916	4_1:+39951442	None:intergenic
AATGGATCTGCCAGAGTTAT+AGG	0.277310	4_1:-39952265	Msa0547170:CDS
ACAGCTGGGTTTATACCGGA+CGG	0.670270	4_1:+39952335	None:intergenic
ACCAACAGCTGGGTTTATAC+CGG	0.520732	4_1:+39952331	None:intergenic
ACCGGACGGAGAAATGGCCA+TGG	0.644894	4_1:+39952349	None:intergenic
AGCTTTACAAGACATCACAT+TGG	0.658238	4_1:-39951847	Msa0547170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCCTTTAATCAGTTACTATT+TGG	-	chr4_1:39951511-39951530	Msa0547170:three_prime_UTR	30.0%
CCCAAATAGTAACTGATTAA+AGG	+	chr4_1:39951515-39951534	None:intergenic	30.0%
CTTATGTTTAGAAAGGAAGT+TGG	-	chr4_1:39951673-39951692	Msa0547170:intron	30.0%
ACATTAATCTCGCGTTATAA+AGG	+	chr4_1:39951720-39951739	None:intergenic	30.0%
TTTGTATTTGCAAATCAAGC+TGG	-	chr4_1:39951774-39951793	Msa0547170:intron	30.0%
GATAAAATATTTGACGAGTC+TGG	-	chr4_1:39951846-39951865	Msa0547170:CDS	30.0%
GTTGTGTATACTTTGATTAG+GGG	-	chr4_1:39951988-39952007	Msa0547170:intron	30.0%
TTGATTACTAGCATTCACAT+TGG	+	chr4_1:39952166-39952185	None:intergenic	30.0%
AAATTTGAAGGGGAAAAATC+AGG	-	chr4_1:39952190-39952209	Msa0547170:intron	30.0%
CTAAAGCAAATCATCTTGAA+AGG	-	chr4_1:39952394-39952413	Msa0547170:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	39951273	39952420	39951273	ID=Msa0547170;Name=Msa0547170
chr4_1	mRNA	39951273	39952420	39951273	ID=Msa0547170-mRNA-1;Parent=Msa0547170;Name=Msa0547170-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0\|0.5\|0.33\|0.66\|1\|0.66\|3\|263\|152
chr4_1	exon	39951273	39951685	39951273	ID=Msa0547170-mRNA-1:exon:10196;Parent=Msa0547170-mRNA-1
chr4_1	exon	39951782	39951931	39951782	ID=Msa0547170-mRNA-1:exon:10195;Parent=Msa0547170-mRNA-1
chr4_1	exon	39952262	39952420	39952262	ID=Msa0547170-mRNA-1:exon:10194;Parent=Msa0547170-mRNA-1
chr4_1	CDS	39952262	39952420	39952262	ID=Msa0547170-mRNA-1:cds;Parent=Msa0547170-mRNA-1
chr4_1	CDS	39951782	39951931	39951782	ID=Msa0547170-mRNA-1:cds;Parent=Msa0547170-mRNA-1
chr4_1	CDS	39951536	39951685	39951536	ID=Msa0547170-mRNA-1:cds;Parent=Msa0547170-mRNA-1
chr4_1	three_prime_UTR	39951273	39951535	39951273	ID=Msa0547170-mRNA-1:three_prime_utr;Parent=Msa0547170-mRNA-1

Gene Sequence

>Msa0547170

ATGGCACGTCAATATGTTCGTAGTGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCCATTTCTCCGTCCGGTATAAACCCAGCTGTTGGTGCCAAACTTTCTCCTGGTTCTCCAGAAGCAGTTACACTAGCTCAATGGATCTGCCAGAGTTATAGGCAATCGCAGCCGGTGTTTGTATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGACGAGTCTGGTCGCAAGGCGTTGTGTGCTGATTTTGCCAAGTTAATGCAACAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCGACAATGGGGCGGCATGTTTCGTACGAGCAAGCCATTGCATGGAAAGTGCTAACACCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA

Protein sequence

>Msa0547170

MARQYVRSVISSVQRVAMAISPSGINPAVGAKLSPGSPEAVTLAQWICQSYRQSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTPEDNTVHCLAFSFINWSFV*