AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0297790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297790 MtrunA17_Chr2g0321081 98.851 174 2 0 1 174 1 174 1.37e-123 345
Msa0297790 MtrunA17_Chr7g0265921 67.742 155 48 1 20 174 14 166 8.67e-62 188
Msa0297790 MtrunA17_Chr1g0198271 56.329 158 68 1 17 173 11 168 4.65e-51 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0297790 AT2G27740.1 59.649 171 68 1 1 171 1 170 4.84e-68 205
Msa0297790 AT2G36410.2 67.647 136 44 0 38 173 57 192 2.09e-61 189
Msa0297790 AT3G52920.2 68.889 135 42 0 38 172 28 162 4.09e-61 187
Msa0297790 AT3G09980.1 70.139 144 43 0 31 174 35 178 9.39e-60 184
Msa0297790 AT2G36410.1 66.187 139 44 1 38 173 57 195 2.51e-59 183
Msa0297790 AT3G52920.1 67.391 138 42 1 38 172 28 165 6.33e-59 182
Msa0297790 AT5G03660.1 66.418 134 45 0 38 171 36 169 2.24e-49 157
Msa0297790 AT3G52900.1 51.974 152 73 0 23 174 13 164 1.52e-48 155
Msa0297790 AT2G36355.1 51.299 154 69 2 22 173 5 154 1.73e-44 144
Msa0297790 AT2G27740.2 53.659 123 56 1 1 123 1 122 1.16e-41 136
Msa0297790 AT5G03660.3 63.793 116 42 0 38 153 36 151 8.83e-40 132
Msa0297790 AT2G36410.3 66.279 86 29 0 38 123 57 142 3.30e-35 120
Msa0297790 AT5G03660.2 53.731 134 40 1 38 171 36 147 1.00e-31 112
Msa0297790 AT2G36355.3 62.651 83 31 0 91 173 1 83 1.19e-30 107
Msa0297790 AT2G36355.2 61.628 86 33 0 88 173 27 112 1.47e-30 107
Msa0297790 AT2G36355.4 44.144 111 55 3 22 130 5 110 3.17e-22 87.0

Find 42 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACTCAACTGCAAAATT+TGG 0.159062 2_3:-51597454 Msa0297790:three_prime_UTR
ACTTCTAACCTCCACTAATT+TGG 0.202427 2_3:+51597800 None:intergenic
AGAAATTGAGAGAAGAAAAT+TGG 0.229998 2_3:-51599155 Msa0297790:CDS
TTCTCGAATTCGCCGTAATT+AGG 0.276546 2_3:-51597417 Msa0297790:three_prime_UTR
ATTGCAACATCCTTCCTCTT+TGG 0.283049 2_3:+51598490 None:intergenic
TTTCATCTCTTCTTGGACTC+TGG 0.297684 2_3:+51599230 None:intergenic
GGGTCAAACCTGCCAGAAAA+AGG 0.317850 2_3:-51598422 Msa0297790:intron
GTGCAACATGTGAAGAATTC+AGG 0.356148 2_3:-51599268 Msa0297790:CDS
ACTCTTCTTTCCTCTACCTT+AGG 0.358190 2_3:+51599413 None:intergenic
TCTAGCAATGTTTAGAGAAA+AGG 0.359449 2_3:-51599182 Msa0297790:CDS
TTCTGGCAGGTTTGACCCAA+TGG 0.366095 2_3:+51598427 None:intergenic
AATTAGGATATTTGACTGTT+TGG 0.389046 2_3:-51597401 Msa0297790:three_prime_UTR
AAAATTGGAGGTTAGAGATA+AGG 0.419428 2_3:-51599140 Msa0297790:CDS
GAGTCCAAGAAGAGATGAAA+AGG 0.433573 2_3:-51599227 Msa0297790:CDS
AACAAAGAGTTGAAGCCATT+GGG 0.443322 2_3:-51598442 Msa0297790:CDS
TTTCAAAGAAAAGAGAAAAC+AGG 0.450500 2_3:-51599385 Msa0297790:five_prime_UTR
AGAAATTGCATAGGAGATTG+AGG 0.462032 2_3:-51598524 Msa0297790:intron
GAGGATAAGGATGAAGAAGC+TGG 0.468797 2_3:-51597650 Msa0297790:CDS
CGAAAAGGAAACAAAGAGAT+TGG 0.472358 2_3:-51599095 Msa0297790:CDS
TCAACTTGTTACCAAATTAG+TGG 0.474598 2_3:-51597811 Msa0297790:CDS
ACAGTCAAATATCCTAATTA+CGG 0.480380 2_3:+51597405 None:intergenic
GCTAGTGAAAGTAGCCTTGT+GGG 0.485200 2_3:-51597587 Msa0297790:three_prime_UTR
GAAATTGCATAGGAGATTGA+GGG 0.490039 2_3:-51598523 Msa0297790:intron
TAACAAAGAGTTGAAGCCAT+TGG 0.493465 2_3:-51598443 Msa0297790:CDS
TTTATAAGCACCTAAGGTAG+AGG 0.505239 2_3:-51599423 Msa0297790:five_prime_UTR
GATAAGGTTCATGCTCATCT+TGG 0.506717 2_3:-51599124 Msa0297790:CDS
AGGATATTTGACTGTTTGGT+AGG 0.507929 2_3:-51597397 Msa0297790:three_prime_UTR
TCATCTTGGTCGAGTCGAAA+AGG 0.517837 2_3:-51599110 Msa0297790:CDS
TGACTGAAAGTGAGAGGATA+AGG 0.518680 2_3:-51597663 Msa0297790:CDS
AAGAAGAGATGAAAAGGAAG+AGG 0.527146 2_3:-51599221 Msa0297790:CDS
AATTGAGAGAAGAAAATTGG+AGG 0.531288 2_3:-51599152 Msa0297790:CDS
AAAATTCTTATTATTTGATG+TGG 0.550591 2_3:-51597546 Msa0297790:three_prime_UTR
AGAATACAATGAAGCTCTTG+AGG 0.569694 2_3:-51597862 Msa0297790:CDS
TGAGATTTGTGGAGCAGCAA+TGG 0.594907 2_3:-51599335 Msa0297790:exon
TGCTAGTGAAAGTAGCCTTG+TGG 0.611246 2_3:-51597588 Msa0297790:three_prime_UTR
TTTCACAGATCCAAAGAGGA+AGG 0.618763 2_3:-51598500 Msa0297790:CDS
AGGGTTTCACAGATCCAAAG+AGG 0.622777 2_3:-51598504 Msa0297790:CDS
AGCTTGTGACTGAAAGTGAG+AGG 0.623994 2_3:-51597669 Msa0297790:CDS
ACTTGTTACCAAATTAGTGG+AGG 0.627774 2_3:-51597808 Msa0297790:intron
AACATCACACTGAACCCACA+AGG 0.656050 2_3:+51597573 None:intergenic
GATAAGGATGAAGAAGCTGG+AGG 0.694341 2_3:-51597647 Msa0297790:CDS
AGTTAGAAAGAAGATAGACA+TGG 0.715757 2_3:-51598467 Msa0297790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAAAAACAATGTA+CGG + chr2_3:51598855-51598874 None:intergenic 10.0%
!!! TATTTTTTAAAAACAATGTA+CGG + chr2_3:51598855-51598874 None:intergenic 10.0%
!! TTATAATATCTTTACAACAT+AGG - chr2_3:51598470-51598489 Msa0297790:CDS 15.0%
!! GAAATTAAAGCAAATAATTA+AGG + chr2_3:51598577-51598596 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG - chr2_3:51598578-51598597 Msa0297790:intron 15.0%
!! ATATGTTTATTTAGTTGTTT+AGG - chr2_3:51598641-51598660 Msa0297790:intron 15.0%
!!! TTGTGAAACTATATATTTTT+GGG - chr2_3:51598925-51598944 Msa0297790:intron 15.0%
!! AAAATTCTTATTATTTGATG+TGG - chr2_3:51599276-51599295 Msa0297790:CDS 15.0%
!! TTATAATATCTTTACAACAT+AGG - chr2_3:51598470-51598489 Msa0297790:CDS 15.0%
!! GAAATTAAAGCAAATAATTA+AGG + chr2_3:51598577-51598596 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG - chr2_3:51598578-51598597 Msa0297790:intron 15.0%
!! ATATGTTTATTTAGTTGTTT+AGG - chr2_3:51598641-51598660 Msa0297790:intron 15.0%
!!! TTGTGAAACTATATATTTTT+GGG - chr2_3:51598925-51598944 Msa0297790:intron 15.0%
!! AAAATTCTTATTATTTGATG+TGG - chr2_3:51599276-51599295 Msa0297790:CDS 15.0%
!! TTTGATATTGTAGAAAATCA+CGG - chr2_3:51597965-51597984 Msa0297790:intron 20.0%
!! CAAACAAAGATTGTTTATAA+TGG + chr2_3:51598278-51598297 None:intergenic 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG + chr2_3:51598574-51598593 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG + chr2_3:51598605-51598624 None:intergenic 20.0%
!!! CTTGTGAAACTATATATTTT+TGG - chr2_3:51598924-51598943 Msa0297790:intron 20.0%
!!! TGTGAAACTATATATTTTTG+GGG - chr2_3:51598926-51598945 Msa0297790:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG + chr2_3:51599098-51599117 None:intergenic 20.0%
!! TTTGATATTGTAGAAAATCA+CGG - chr2_3:51597965-51597984 Msa0297790:intron 20.0%
!! CAAACAAAGATTGTTTATAA+TGG + chr2_3:51598278-51598297 None:intergenic 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG + chr2_3:51598574-51598593 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG + chr2_3:51598605-51598624 None:intergenic 20.0%
!!! CTTGTGAAACTATATATTTT+TGG - chr2_3:51598924-51598943 Msa0297790:intron 20.0%
!!! TGTGAAACTATATATTTTTG+GGG - chr2_3:51598926-51598945 Msa0297790:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG + chr2_3:51599098-51599117 None:intergenic 20.0%
!!! TTTTGTTTTATAAGCACCTA+AGG - chr2_3:51597393-51597412 Msa0297790:three_prime_UTR 25.0%
! TTTCAAAGAAAAGAGAAAAC+AGG - chr2_3:51597437-51597456 Msa0297790:three_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG - chr2_3:51597667-51597686 Msa0297790:CDS 25.0%
! CAAATTCAGTGTTTGTTTAT+TGG + chr2_3:51597773-51597792 None:intergenic 25.0%
! ATGATGTTTCATTGTTTGTT+TGG - chr2_3:51597806-51597825 Msa0297790:intron 25.0%
!!! ATTGTTTGTTTGGTTTTTAC+TGG - chr2_3:51597816-51597835 Msa0297790:CDS 25.0%
!!! TTCACTTGTTTGGTTTTTAT+TGG - chr2_3:51597869-51597888 Msa0297790:CDS 25.0%
! ATTTCAACGTTATATTGTCA+CGG + chr2_3:51598036-51598055 None:intergenic 25.0%
! TTACATTTGATCTATAGTGA+AGG - chr2_3:51598119-51598138 Msa0297790:intron 25.0%
! TATCAAAAGCAAAACACATT+GGG + chr2_3:51598520-51598539 None:intergenic 25.0%
! ATATCAAAAGCAAAACACAT+TGG + chr2_3:51598521-51598540 None:intergenic 25.0%
!!! CCTTTTGATGACATAATATA+TGG + chr2_3:51598606-51598625 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG - chr2_3:51598603-51598622 Msa0297790:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG - chr2_3:51598606-51598625 Msa0297790:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG - chr2_3:51598987-51599006 Msa0297790:intron 25.0%
!!! AATGTATTTTGCTGACTTTA+GGG - chr2_3:51599313-51599332 Msa0297790:CDS 25.0%
!! TGTTTAATGCACACTTTTAT+TGG + chr2_3:51599347-51599366 None:intergenic 25.0%
! ACAGTCAAATATCCTAATTA+CGG + chr2_3:51599420-51599439 None:intergenic 25.0%
! AATTAGGATATTTGACTGTT+TGG - chr2_3:51599421-51599440 Msa0297790:five_prime_UTR 25.0%
!!! TTTTGTTTTATAAGCACCTA+AGG - chr2_3:51597393-51597412 Msa0297790:three_prime_UTR 25.0%
! TTTCAAAGAAAAGAGAAAAC+AGG - chr2_3:51597437-51597456 Msa0297790:three_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG - chr2_3:51597667-51597686 Msa0297790:CDS 25.0%
! CAAATTCAGTGTTTGTTTAT+TGG + chr2_3:51597773-51597792 None:intergenic 25.0%
! ATGATGTTTCATTGTTTGTT+TGG - chr2_3:51597806-51597825 Msa0297790:intron 25.0%
!!! ATTGTTTGTTTGGTTTTTAC+TGG - chr2_3:51597816-51597835 Msa0297790:CDS 25.0%
!!! TTCACTTGTTTGGTTTTTAT+TGG - chr2_3:51597869-51597888 Msa0297790:CDS 25.0%
! ATTTCAACGTTATATTGTCA+CGG + chr2_3:51598036-51598055 None:intergenic 25.0%
! TTACATTTGATCTATAGTGA+AGG - chr2_3:51598119-51598138 Msa0297790:intron 25.0%
! TATCAAAAGCAAAACACATT+GGG + chr2_3:51598520-51598539 None:intergenic 25.0%
! ATATCAAAAGCAAAACACAT+TGG + chr2_3:51598521-51598540 None:intergenic 25.0%
!!! CCTTTTGATGACATAATATA+TGG + chr2_3:51598606-51598625 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG - chr2_3:51598603-51598622 Msa0297790:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG - chr2_3:51598606-51598625 Msa0297790:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG - chr2_3:51598987-51599006 Msa0297790:intron 25.0%
!!! AATGTATTTTGCTGACTTTA+GGG - chr2_3:51599313-51599332 Msa0297790:CDS 25.0%
!! TGTTTAATGCACACTTTTAT+TGG + chr2_3:51599347-51599366 None:intergenic 25.0%
! ACAGTCAAATATCCTAATTA+CGG + chr2_3:51599420-51599439 None:intergenic 25.0%
! AATTAGGATATTTGACTGTT+TGG - chr2_3:51599421-51599440 Msa0297790:five_prime_UTR 25.0%
! AAAAAGTGTGTTGAGATTTG+TGG - chr2_3:51597476-51597495 Msa0297790:three_prime_UTR 30.0%
! TGCTGATCATATGATCTTTT+TGG + chr2_3:51597518-51597537 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG - chr2_3:51597640-51597659 Msa0297790:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG - chr2_3:51597670-51597689 Msa0297790:CDS 30.0%
AAAATTGGAGGTTAGAGATA+AGG - chr2_3:51597682-51597701 Msa0297790:intron 30.0%
TGTGCAAAGTTTCAAAATCA+TGG - chr2_3:51597912-51597931 Msa0297790:intron 30.0%
CAATATCAAAGATTACTACG+TGG + chr2_3:51597955-51597974 None:intergenic 30.0%
ACAATATAACGTTGAAATCG+CGG - chr2_3:51598038-51598057 Msa0297790:intron 30.0%
!! TTTTAAAAAACGGTCTGCAA+CGG + chr2_3:51598073-51598092 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG + chr2_3:51598083-51598102 None:intergenic 30.0%
TAAAGCTAATGCTTAAATCC+TGG + chr2_3:51598102-51598121 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG - chr2_3:51598289-51598308 Msa0297790:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG - chr2_3:51598355-51598374 Msa0297790:intron 30.0%
! TGGAAAATCTAACCTTTTTC+TGG + chr2_3:51598415-51598434 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG + chr2_3:51598435-51598454 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG - chr2_3:51598482-51598501 Msa0297790:CDS 30.0%
AATTTGAATTCCGTCTGTTT+CGG + chr2_3:51598778-51598797 None:intergenic 30.0%
TTAAAAACAATGTACGGAAG+AGG + chr2_3:51598849-51598868 None:intergenic 30.0%
!!! CTATATATTTTTGGGGTTAC+AGG - chr2_3:51598933-51598952 Msa0297790:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG - chr2_3:51599011-51599030 Msa0297790:intron 30.0%
! CTTTGCATTATGTGAACTTT+TGG - chr2_3:51599127-51599146 Msa0297790:CDS 30.0%
!!! CAATGTATTTTGCTGACTTT+AGG - chr2_3:51599312-51599331 Msa0297790:CDS 30.0%
TTGAACTCAACTGCAAAATT+TGG - chr2_3:51599368-51599387 Msa0297790:five_prime_UTR 30.0%
! AAAAAGTGTGTTGAGATTTG+TGG - chr2_3:51597476-51597495 Msa0297790:three_prime_UTR 30.0%
! TGCTGATCATATGATCTTTT+TGG + chr2_3:51597518-51597537 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG - chr2_3:51597640-51597659 Msa0297790:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG - chr2_3:51597670-51597689 Msa0297790:CDS 30.0%
AAAATTGGAGGTTAGAGATA+AGG - chr2_3:51597682-51597701 Msa0297790:intron 30.0%
TGTGCAAAGTTTCAAAATCA+TGG - chr2_3:51597912-51597931 Msa0297790:intron 30.0%
CAATATCAAAGATTACTACG+TGG + chr2_3:51597955-51597974 None:intergenic 30.0%
ACAATATAACGTTGAAATCG+CGG - chr2_3:51598038-51598057 Msa0297790:intron 30.0%
!! TTTTAAAAAACGGTCTGCAA+CGG + chr2_3:51598073-51598092 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG + chr2_3:51598083-51598102 None:intergenic 30.0%
TAAAGCTAATGCTTAAATCC+TGG + chr2_3:51598102-51598121 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG - chr2_3:51598289-51598308 Msa0297790:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG - chr2_3:51598355-51598374 Msa0297790:intron 30.0%
! TGGAAAATCTAACCTTTTTC+TGG + chr2_3:51598415-51598434 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG + chr2_3:51598435-51598454 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG - chr2_3:51598482-51598501 Msa0297790:CDS 30.0%
AATTTGAATTCCGTCTGTTT+CGG + chr2_3:51598778-51598797 None:intergenic 30.0%
TTAAAAACAATGTACGGAAG+AGG + chr2_3:51598849-51598868 None:intergenic 30.0%
!!! CTATATATTTTTGGGGTTAC+AGG - chr2_3:51598933-51598952 Msa0297790:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG - chr2_3:51599011-51599030 Msa0297790:intron 30.0%
! CTTTGCATTATGTGAACTTT+TGG - chr2_3:51599127-51599146 Msa0297790:CDS 30.0%
!!! CAATGTATTTTGCTGACTTT+AGG - chr2_3:51599312-51599331 Msa0297790:CDS 30.0%
TTGAACTCAACTGCAAAATT+TGG - chr2_3:51599368-51599387 Msa0297790:five_prime_UTR 30.0%
TTTATAAGCACCTAAGGTAG+AGG - chr2_3:51597399-51597418 Msa0297790:three_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG + chr2_3:51597602-51597621 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG - chr2_3:51597601-51597620 Msa0297790:exon 35.0%
CGAAAAGGAAACAAAGAGAT+TGG - chr2_3:51597727-51597746 Msa0297790:intron 35.0%
TGTGCAAAGTTTCACTTGTT+TGG - chr2_3:51597859-51597878 Msa0297790:CDS 35.0%
TTGTCACGGATATCAAATTG+TGG + chr2_3:51598022-51598041 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG - chr2_3:51598081-51598100 Msa0297790:intron 35.0%
TAATGCTTAAATCCTGGTCA+AGG + chr2_3:51598096-51598115 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG - chr2_3:51598298-51598317 Msa0297790:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG - chr2_3:51598299-51598318 Msa0297790:intron 35.0%
TAACAAAGAGTTGAAGCCAT+TGG - chr2_3:51598379-51598398 Msa0297790:intron 35.0%
AACAAAGAGTTGAAGCCATT+GGG - chr2_3:51598380-51598399 Msa0297790:intron 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG + chr2_3:51598411-51598430 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG + chr2_3:51598546-51598565 None:intergenic 35.0%
CGGAATTCAAATTTCTCAGT+TGG - chr2_3:51598785-51598804 Msa0297790:intron 35.0%
AGAATACAATGAAGCTCTTG+AGG - chr2_3:51598960-51598979 Msa0297790:intron 35.0%
! ACTTGTTACCAAATTAGTGG+AGG - chr2_3:51599014-51599033 Msa0297790:intron 35.0%
ACTTCTAACCTCCACTAATT+TGG + chr2_3:51599025-51599044 None:intergenic 35.0%
AGGATATTTGACTGTTTGGT+AGG - chr2_3:51599425-51599444 Msa0297790:five_prime_UTR 35.0%
TTTATAAGCACCTAAGGTAG+AGG - chr2_3:51597399-51597418 Msa0297790:three_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG + chr2_3:51597602-51597621 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG - chr2_3:51597601-51597620 Msa0297790:exon 35.0%
CGAAAAGGAAACAAAGAGAT+TGG - chr2_3:51597727-51597746 Msa0297790:intron 35.0%
TGTGCAAAGTTTCACTTGTT+TGG - chr2_3:51597859-51597878 Msa0297790:CDS 35.0%
TTGTCACGGATATCAAATTG+TGG + chr2_3:51598022-51598041 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG - chr2_3:51598081-51598100 Msa0297790:intron 35.0%
TAATGCTTAAATCCTGGTCA+AGG + chr2_3:51598096-51598115 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG - chr2_3:51598298-51598317 Msa0297790:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG - chr2_3:51598299-51598318 Msa0297790:intron 35.0%
TAACAAAGAGTTGAAGCCAT+TGG - chr2_3:51598379-51598398 Msa0297790:intron 35.0%
AACAAAGAGTTGAAGCCATT+GGG - chr2_3:51598380-51598399 Msa0297790:intron 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG + chr2_3:51598411-51598430 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG + chr2_3:51598546-51598565 None:intergenic 35.0%
CGGAATTCAAATTTCTCAGT+TGG - chr2_3:51598785-51598804 Msa0297790:intron 35.0%
AGAATACAATGAAGCTCTTG+AGG - chr2_3:51598960-51598979 Msa0297790:intron 35.0%
! ACTTGTTACCAAATTAGTGG+AGG - chr2_3:51599014-51599033 Msa0297790:intron 35.0%
ACTTCTAACCTCCACTAATT+TGG + chr2_3:51599025-51599044 None:intergenic 35.0%
AGGATATTTGACTGTTTGGT+AGG - chr2_3:51599425-51599444 Msa0297790:five_prime_UTR 35.0%
ACTCTTCTTTCCTCTACCTT+AGG + chr2_3:51597412-51597431 None:intergenic 40.0%
GTGCAACATGTGAAGAATTC+AGG - chr2_3:51597554-51597573 Msa0297790:three_prime_UTR 40.0%
TTTCATCTCTTCTTGGACTC+TGG + chr2_3:51597595-51597614 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG - chr2_3:51597595-51597614 Msa0297790:three_prime_UTR 40.0%
GATAAGGTTCATGCTCATCT+TGG - chr2_3:51597698-51597717 Msa0297790:intron 40.0%
TCAAATTGTGGTCGCTATTG+CGG + chr2_3:51598010-51598029 None:intergenic 40.0%
TTTCACAGATCCAAAGAGGA+AGG - chr2_3:51598322-51598341 Msa0297790:intron 40.0%
ATTGCAACATCCTTCCTCTT+TGG + chr2_3:51598335-51598354 None:intergenic 40.0%
GTCAATCTCTTACCACCAAA+CGG + chr2_3:51598748-51598767 None:intergenic 40.0%
GACTTTGTAACCGAAACAGA+CGG - chr2_3:51598765-51598784 Msa0297790:intron 40.0%
TGACTGAAAGTGAGAGGATA+AGG - chr2_3:51599159-51599178 Msa0297790:CDS 40.0%
TTCTCGAATTCGCCGTAATT+AGG - chr2_3:51599405-51599424 Msa0297790:five_prime_UTR 40.0%
ACTCTTCTTTCCTCTACCTT+AGG + chr2_3:51597412-51597431 None:intergenic 40.0%
GTGCAACATGTGAAGAATTC+AGG - chr2_3:51597554-51597573 Msa0297790:three_prime_UTR 40.0%
TTTCATCTCTTCTTGGACTC+TGG + chr2_3:51597595-51597614 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG - chr2_3:51597595-51597614 Msa0297790:three_prime_UTR 40.0%
GATAAGGTTCATGCTCATCT+TGG - chr2_3:51597698-51597717 Msa0297790:intron 40.0%
TCAAATTGTGGTCGCTATTG+CGG + chr2_3:51598010-51598029 None:intergenic 40.0%
TTTCACAGATCCAAAGAGGA+AGG - chr2_3:51598322-51598341 Msa0297790:intron 40.0%
ATTGCAACATCCTTCCTCTT+TGG + chr2_3:51598335-51598354 None:intergenic 40.0%
GTCAATCTCTTACCACCAAA+CGG + chr2_3:51598748-51598767 None:intergenic 40.0%
GACTTTGTAACCGAAACAGA+CGG - chr2_3:51598765-51598784 Msa0297790:intron 40.0%
TGACTGAAAGTGAGAGGATA+AGG - chr2_3:51599159-51599178 Msa0297790:CDS 40.0%
TTCTCGAATTCGCCGTAATT+AGG - chr2_3:51599405-51599424 Msa0297790:five_prime_UTR 40.0%
TGAGATTTGTGGAGCAGCAA+TGG - chr2_3:51597487-51597506 Msa0297790:three_prime_UTR 45.0%
TCATCTTGGTCGAGTCGAAA+AGG - chr2_3:51597712-51597731 Msa0297790:intron 45.0%
AGGGTTTCACAGATCCAAAG+AGG - chr2_3:51598318-51598337 Msa0297790:intron 45.0%
TGCTTCTTGTTCCTTCCGTT+TGG - chr2_3:51598730-51598749 Msa0297790:intron 45.0%
TTCTTGTTCCTTCCGTTTGG+TGG - chr2_3:51598733-51598752 Msa0297790:intron 45.0%
ATCTCTTACCACCAAACGGA+AGG + chr2_3:51598744-51598763 None:intergenic 45.0%
AGCTTGTGACTGAAAGTGAG+AGG - chr2_3:51599153-51599172 Msa0297790:CDS 45.0%
GAGGATAAGGATGAAGAAGC+TGG - chr2_3:51599172-51599191 Msa0297790:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG - chr2_3:51599175-51599194 Msa0297790:CDS 45.0%
! TGCTAGTGAAAGTAGCCTTG+TGG - chr2_3:51599234-51599253 Msa0297790:CDS 45.0%
!! GCTAGTGAAAGTAGCCTTGT+GGG - chr2_3:51599235-51599254 Msa0297790:CDS 45.0%
AACATCACACTGAACCCACA+AGG + chr2_3:51599252-51599271 None:intergenic 45.0%
TTTGACTGTTTGGTAGGACC+TGG - chr2_3:51599431-51599450 Msa0297790:five_prime_UTR 45.0%
TGAGATTTGTGGAGCAGCAA+TGG - chr2_3:51597487-51597506 Msa0297790:three_prime_UTR 45.0%
TCATCTTGGTCGAGTCGAAA+AGG - chr2_3:51597712-51597731 Msa0297790:intron 45.0%
AGGGTTTCACAGATCCAAAG+AGG - chr2_3:51598318-51598337 Msa0297790:intron 45.0%
TGCTTCTTGTTCCTTCCGTT+TGG - chr2_3:51598730-51598749 Msa0297790:intron 45.0%
TTCTTGTTCCTTCCGTTTGG+TGG - chr2_3:51598733-51598752 Msa0297790:intron 45.0%
ATCTCTTACCACCAAACGGA+AGG + chr2_3:51598744-51598763 None:intergenic 45.0%
AGCTTGTGACTGAAAGTGAG+AGG - chr2_3:51599153-51599172 Msa0297790:CDS 45.0%
GAGGATAAGGATGAAGAAGC+TGG - chr2_3:51599172-51599191 Msa0297790:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG - chr2_3:51599175-51599194 Msa0297790:CDS 45.0%
! TGCTAGTGAAAGTAGCCTTG+TGG - chr2_3:51599234-51599253 Msa0297790:CDS 45.0%
!! GCTAGTGAAAGTAGCCTTGT+GGG - chr2_3:51599235-51599254 Msa0297790:CDS 45.0%
AACATCACACTGAACCCACA+AGG + chr2_3:51599252-51599271 None:intergenic 45.0%
TTCTGGCAGGTTTGACCCAA+TGG + chr2_3:51598398-51598417 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG - chr2_3:51598400-51598419 Msa0297790:intron 50.0%
TTCTGGCAGGTTTGACCCAA+TGG + chr2_3:51598398-51598417 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG - chr2_3:51598400-51598419 Msa0297790:intron 50.0%
! TCATGGCCACAGTCGCTTTG+CGG - chr2_3:51597929-51597948 Msa0297790:intron 55.0%
! TCATGGCCACAGTCGCTTTG+CGG - chr2_3:51597929-51597948 Msa0297790:intron 55.0%
ACGTGGCCGCAAAGCGACTG+TGG + chr2_3:51597938-51597957 None:intergenic 65.0%
ACGTGGCCGCAAAGCGACTG+TGG + chr2_3:51597938-51597957 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 51597392 51599452 51597392 ID=Msa0297790;Name=Msa0297790
chr2_3 mRNA 51597392 51599452 51597392 ID=Msa0297790-mRNA-1;Parent=Msa0297790;Name=Msa0297790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=114|1|1|1|1|1|4|223|174
chr2_3 exon 51597392 51597689 51597392 ID=Msa0297790-mRNA-1:exon:16427;Parent=Msa0297790-mRNA-1
chr2_3 exon 51597809 51597889 51597809 ID=Msa0297790-mRNA-1:exon:16426;Parent=Msa0297790-mRNA-1
chr2_3 exon 51598423 51598533 51598423 ID=Msa0297790-mRNA-1:exon:16425;Parent=Msa0297790-mRNA-1
chr2_3 exon 51599081 51599452 51599081 ID=Msa0297790-mRNA-1:exon:16424;Parent=Msa0297790-mRNA-1
chr2_3 five_prime_UTR 51599339 51599452 51599339 ID=Msa0297790-mRNA-1:five_prime_utr;Parent=Msa0297790-mRNA-1
chr2_3 CDS 51599081 51599338 51599081 ID=Msa0297790-mRNA-1:cds;Parent=Msa0297790-mRNA-1
chr2_3 CDS 51598423 51598533 51598423 ID=Msa0297790-mRNA-1:cds;Parent=Msa0297790-mRNA-1
chr2_3 CDS 51597809 51597889 51597809 ID=Msa0297790-mRNA-1:cds;Parent=Msa0297790-mRNA-1
chr2_3 CDS 51597615 51597689 51597615 ID=Msa0297790-mRNA-1:cds;Parent=Msa0297790-mRNA-1
chr2_3 three_prime_UTR 51597392 51597614 51597392 ID=Msa0297790-mRNA-1:three_prime_utr;Parent=Msa0297790-mRNA-1
Gene Sequence

>Msa0297790

ATGGCAACACCAAAAAGATCATATGATCAGCAACAACAACTACAGATAGTGCAACATGTGAAGAATTCAGGAATGATTAACAACATCCAGAGTCCAAGAAGAGATGAAAAGGAAGAGGAAATGTCAAGATCAGTTCTAGCAATGTTTAGAGAAAAGGAAGAAGAAATTGAGAGAAGAAAATTGGAGGTTAGAGATAAGGTTCATGCTCATCTTGGTCGAGTCGAAAAGGAAACAAAGAGATTGGCTGAGATAAGAGAAGAGATTGAGGGTTTCACAGATCCAAAGAGGAAGGATGTTGCAATAGTTAGAAAGAAGATAGACATGGTTAACAAAGAGTTGAAGCCATTGGGTCAAACCTGCCAGAAAAAGGAGAGAGAATACAATGAAGCTCTTGAGGCTTTCAATGAGAAAAACAAAGAAAAGGCTCAACTTGTTACCAAATTAGTGGAGCTTGTGACTGAAAGTGAGAGGATAAGGATGAAGAAGCTGGAGGATCTAAGCAAAAATATAGATACACTTCACTAA

Protein sequence

>Msa0297790

MATPKRSYDQQQQLQIVQHVKNSGMINNIQSPRRDEKEEEMSRSVLAMFREKEEEIERRKLEVRDKVHAHLGRVEKETKRLAEIREEIEGFTDPKRKDVAIVRKKIDMVNKELKPLGQTCQKKEREYNEALEAFNEKNKEKAQLVTKLVELVTESERIRMKKLEDLSKNIDTLH*