Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585880 | XP_013454514.3 | 79.101 | 378 | 19 | 2 | 16 | 341 | 166 | 535 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585880 | sp|A8MRD9|PDS5D_ARATH | 48.246 | 114 | 59 | 0 | 16 | 129 | 165 | 278 | 7.47e-28 | 123 |
| Msa0585880 | sp|A8MRD9|PDS5D_ARATH | 42.105 | 76 | 44 | 0 | 600 | 675 | 542 | 617 | 2.34e-14 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585880 | A0A396HYD0 | 79.101 | 378 | 19 | 2 | 16 | 341 | 166 | 535 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0585880 | 0.811990 | 5.308490e-51 | -8.615850e-47 |
| Msa0157290 | Msa0585880 | 0.811885 | 5.597828e-51 | -8.615850e-47 |
| Msa0192510 | Msa0585880 | 0.810783 | 9.709249e-51 | -8.615850e-47 |
| Msa0200260 | Msa0585880 | 0.809292 | 2.033763e-50 | -8.615850e-47 |
| Msa0243100 | Msa0585880 | 0.801102 | 1.055114e-48 | -8.615850e-47 |
| Msa0272690 | Msa0585880 | 0.800994 | 1.110127e-48 | -8.615850e-47 |
| Msa0529930 | Msa0585880 | 0.800954 | 1.130758e-48 | -8.615850e-47 |
| Msa0533070 | Msa0585880 | 0.800627 | 1.318592e-48 | -8.615850e-47 |
| Msa0571140 | Msa0585880 | 0.811362 | 7.270245e-51 | -8.615850e-47 |
| Msa0581760 | Msa0585880 | 0.805556 | 1.261148e-49 | -8.615850e-47 |
| Msa0585300 | Msa0585880 | 0.816945 | 4.256180e-52 | -8.615850e-47 |
| Msa0585880 | Msa0657970 | 0.804154 | 2.475894e-49 | -8.615850e-47 |
| Msa0585880 | Msa0691380 | 0.806599 | 7.607111e-50 | -8.615850e-47 |
| Msa0585880 | Msa0708520 | 0.801037 | 1.087875e-48 | -8.615850e-47 |
| Msa0585880 | Msa0844240 | 0.801740 | 7.807106e-49 | -8.615850e-47 |
| Msa0585880 | Msa0880140 | 0.808087 | 3.680180e-50 | -8.615850e-47 |
| Msa0585880 | Msa1222970 | 0.825015 | 5.902463e-54 | -8.615850e-47 |
| Msa0585880 | Msa1222990 | 0.804194 | 2.428339e-49 | -8.615850e-47 |
| Msa0585880 | Msa1242220 | 0.802321 | 5.929792e-49 | -8.615850e-47 |
| Msa0585880 | Msa1242230 | 0.812844 | 3.455780e-51 | -8.615850e-47 |
| Msa0585880 | Msa1242240 | 0.824615 | 7.332933e-54 | -8.615850e-47 |
| Msa0585880 | Msa1264020 | 0.813970 | 1.954309e-51 | -8.615850e-47 |
| Msa0585880 | Msa1283840 | 0.813920 | 2.004384e-51 | -8.615850e-47 |
| Msa0585880 | Msa1284260 | 0.817052 | 4.027503e-52 | -8.615850e-47 |
| Msa0585880 | Msa1322860 | 0.818140 | 2.289737e-52 | -8.615850e-47 |
| Msa0585880 | Msa1327050 | 0.809130 | 2.202485e-50 | -8.615850e-47 |
| Msa0585880 | Msa1367080 | 0.811895 | 5.568578e-51 | -8.615850e-47 |
| Msa0585880 | Msa1378760 | 0.800712 | 1.267007e-48 | -8.615850e-47 |
| Msa0585880 | Msa1427760 | 0.802314 | 5.951222e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585880 | MtrunA17_Chr4g0001301 | 79.101 | 378 | 19 | 2 | 16 | 341 | 166 | 535 | 0.0 | 573 |
| Msa0585880 | MtrunA17_Chr4g0013641 | 54.444 | 180 | 79 | 2 | 148 | 327 | 33 | 209 | 1.02e-49 | 175 |
| Msa0585880 | MtrunA17_Chr4g0013641 | 53.333 | 60 | 28 | 0 | 499 | 558 | 198 | 257 | 1.24e-11 | 65.9 |
| Msa0585880 | MtrunA17_Chr1g0149971 | 44.762 | 105 | 58 | 0 | 16 | 120 | 163 | 267 | 2.91e-23 | 105 |
| Msa0585880 | MtrunA17_Chr1g0149971 | 50.000 | 90 | 35 | 3 | 586 | 675 | 635 | 714 | 6.85e-17 | 85.5 |
| Msa0585880 | MtrunA17_Chr3g0137011 | 45.833 | 96 | 52 | 0 | 16 | 111 | 163 | 258 | 9.57e-22 | 100 |
| Msa0585880 | MtrunA17_Chr3g0137011 | 31.915 | 141 | 71 | 3 | 558 | 675 | 452 | 590 | 5.96e-13 | 72.4 |
| Msa0585880 | MtrunA17_Chr2g0290621 | 42.727 | 110 | 51 | 3 | 561 | 669 | 1322 | 1420 | 3.35e-15 | 80.1 |
| Msa0585880 | MtrunA17_Chr4g0076411 | 43.529 | 85 | 38 | 3 | 586 | 669 | 1353 | 1428 | 1.03e-12 | 72.0 |
| Msa0585880 | MtrunA17_Chr7g0269931 | 50.980 | 51 | 25 | 0 | 616 | 666 | 90 | 140 | 3.55e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585880 | AT1G80810.1 | 48.246 | 114 | 59 | 0 | 16 | 129 | 113 | 226 | 6.13e-29 | 124 |
| Msa0585880 | AT1G80810.1 | 46.875 | 64 | 34 | 0 | 612 | 675 | 501 | 564 | 1.35e-14 | 78.2 |
| Msa0585880 | AT1G80810.4 | 48.246 | 114 | 59 | 0 | 16 | 129 | 113 | 226 | 6.42e-29 | 124 |
| Msa0585880 | AT1G80810.4 | 42.105 | 76 | 44 | 0 | 600 | 675 | 490 | 565 | 2.46e-15 | 80.5 |
| Msa0585880 | AT1G80810.2 | 48.246 | 114 | 59 | 0 | 16 | 129 | 113 | 226 | 6.42e-29 | 124 |
| Msa0585880 | AT1G80810.2 | 42.105 | 76 | 44 | 0 | 600 | 675 | 490 | 565 | 2.46e-15 | 80.5 |
| Msa0585880 | AT1G80810.5 | 48.246 | 114 | 59 | 0 | 16 | 129 | 165 | 278 | 7.50e-29 | 123 |
| Msa0585880 | AT1G80810.5 | 42.105 | 76 | 44 | 0 | 600 | 675 | 542 | 617 | 2.23e-15 | 80.5 |
| Msa0585880 | AT1G80810.3 | 48.246 | 114 | 59 | 0 | 16 | 129 | 165 | 278 | 7.59e-29 | 123 |
| Msa0585880 | AT1G80810.3 | 42.105 | 76 | 44 | 0 | 600 | 675 | 542 | 617 | 2.38e-15 | 80.9 |
| Msa0585880 | AT1G15940.1 | 31.225 | 253 | 118 | 6 | 16 | 262 | 167 | 369 | 2.39e-23 | 106 |
| Msa0585880 | AT1G15940.1 | 44.578 | 83 | 39 | 2 | 611 | 686 | 566 | 648 | 8.36e-14 | 75.9 |
| Msa0585880 | AT4G31880.1 | 46.847 | 111 | 57 | 2 | 16 | 126 | 163 | 271 | 1.65e-20 | 97.4 |
| Msa0585880 | AT4G31880.1 | 58.491 | 53 | 22 | 0 | 613 | 665 | 605 | 657 | 1.08e-15 | 82.0 |
| Msa0585880 | AT4G31880.2 | 46.847 | 111 | 57 | 2 | 16 | 126 | 163 | 271 | 1.67e-20 | 97.4 |
| Msa0585880 | AT4G31880.2 | 58.491 | 53 | 22 | 0 | 613 | 665 | 604 | 656 | 1.11e-15 | 81.6 |
| Msa0585880 | AT5G47690.2 | 40.385 | 104 | 59 | 1 | 566 | 669 | 1321 | 1421 | 4.33e-17 | 86.7 |
| Msa0585880 | AT5G47690.3 | 40.385 | 104 | 59 | 1 | 566 | 669 | 1321 | 1421 | 4.37e-17 | 86.7 |
| Msa0585880 | AT5G47690.4 | 40.385 | 104 | 59 | 1 | 566 | 669 | 1224 | 1324 | 5.22e-17 | 86.3 |
| Msa0585880 | AT5G47690.1 | 42.718 | 103 | 55 | 2 | 568 | 669 | 1321 | 1420 | 1.52e-16 | 85.1 |
| Msa0585880 | AT5G10950.1 | 50.000 | 56 | 28 | 0 | 612 | 667 | 33 | 88 | 2.61e-14 | 75.9 |
Find 150 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTGCGTCTTATCCTTTC+TGG | 0.144733 | 4_2:+6983676 | None:intergenic |
| ACTTTGTCTCATCCATAATT+TGG | 0.161292 | 4_2:+6984293 | None:intergenic |
| TTCAATATTGACGCAGAATT+AGG | 0.164323 | 4_2:+6983341 | None:intergenic |
| CTTTCTTACACTATCTAATA+AGG | 0.186482 | 4_2:+6984998 | None:intergenic |
| CGTCTTTCGGAGTTTGTAAT+TGG | 0.195641 | 4_2:+6984187 | None:intergenic |
| GAGGAATGTGTCAAACTTTA+TGG | 0.198692 | 4_2:-6981769 | Msa0585880:three_prime_UTR |
| GGAGCTTCACCGACAGTTTC+AGG | 0.207919 | 4_2:+6983650 | None:intergenic |
| AGAGCTTCACCGACAGTTTC+AGG | 0.220476 | 4_2:+6983899 | None:intergenic |
| TCACCTATGTCTTGGACTTT+GGG | 0.223912 | 4_2:-6984869 | Msa0585880:CDS |
| GTCTTATCCTTTCTGTTAGA+AGG | 0.231603 | 4_2:+6983932 | None:intergenic |
| GTAACTCATTGGTTGGTAAA+AGG | 0.238223 | 4_2:-6982828 | Msa0585880:CDS |
| GCCAAGTTGAAGTCTCTTAA+AGG | 0.251254 | 4_2:-6982278 | Msa0585880:intron |
| TTCACCTATGTCTTGGACTT+TGG | 0.253766 | 4_2:-6984870 | Msa0585880:CDS |
| TGAATCAGTCTTCATTCTTT+TGG | 0.266888 | 4_2:+6981818 | None:intergenic |
| CACAGTATCCAGCTGAGTTT+TGG | 0.285566 | 4_2:+6984108 | None:intergenic |
| TTTACTTCACAGGGTTCTTC+AGG | 0.289524 | 4_2:+6984488 | None:intergenic |
| GCCTTCCTCGGGATTCATTA+AGG | 0.291880 | 4_2:+6984057 | None:intergenic |
| GATTCCGAAACTAAAGCTTC+TGG | 0.306478 | 4_2:+6983482 | None:intergenic |
| GGTTCTTCAGGAGCATCTTT+AGG | 0.320848 | 4_2:+6984500 | None:intergenic |
| ATCATCTCAATCCAACAAAA+AGG | 0.324746 | 4_2:-6983744 | Msa0585880:CDS |
| ATCATCTCAATCCAACAAAA+AGG | 0.324746 | 4_2:-6983993 | Msa0585880:CDS |
| AAATTATGTATAAAGTTTGA+TGG | 0.340639 | 4_2:-6983191 | Msa0585880:CDS |
| TCAATATTGACGCAGAATTA+GGG | 0.345215 | 4_2:+6983342 | None:intergenic |
| GATTCTTACATCTTGTCTAA+TGG | 0.348280 | 4_2:+6982790 | None:intergenic |
| AAAACTTCTACTTCTGATAA+AGG | 0.360560 | 4_2:-6983011 | Msa0585880:CDS |
| TCGGGATTCATTAAGGAGTT+AGG | 0.360851 | 4_2:+6984064 | None:intergenic |
| TGATTTGGTTGATGATTTCA+TGG | 0.364782 | 4_2:-6981858 | Msa0585880:CDS |
| TGAATGATATCCTTTGTAAA+GGG | 0.372819 | 4_2:+6983431 | None:intergenic |
| GGCTTACGTGCCCTCTTCCT+TGG | 0.376832 | 4_2:+6984085 | None:intergenic |
| TTTAAGTTTGACAGCACAAT+TGG | 0.385577 | 4_2:+6984832 | None:intergenic |
| TGTGAGAGATGTCCAAATTA+TGG | 0.390475 | 4_2:-6984305 | Msa0585880:CDS |
| ATTGATTCAATGACATTACT+TGG | 0.395549 | 4_2:+6985083 | None:intergenic |
| TCTTAAAATCAGGTGACTAC+AGG | 0.398236 | 4_2:-6984349 | Msa0585880:intron |
| TTTCTTACACTATCTAATAA+GGG | 0.399284 | 4_2:+6984999 | None:intergenic |
| TATGGTACTTTCTGTTAGAA+TGG | 0.400005 | 4_2:-6981751 | Msa0585880:three_prime_UTR |
| AACTCCAGAAGCTTTAGTTT+CGG | 0.405413 | 4_2:-6983486 | Msa0585880:CDS |
| AATGTGCATACTGTATATAT+TGG | 0.406251 | 4_2:-6981714 | Msa0585880:three_prime_UTR |
| CTCATACCTTCAGGATTTGA+CGG | 0.412341 | 4_2:+6983512 | None:intergenic |
| GAAGGAAAGTTAGTAGCATT+GGG | 0.412857 | 4_2:-6983379 | Msa0585880:CDS |
| CTAATACCCTTGGTAGAATC+AGG | 0.413012 | 4_2:+6983536 | None:intergenic |
| CTAATACCCTTGGTAGAATC+AGG | 0.413012 | 4_2:+6983785 | None:intergenic |
| GTCTTATCCTTTCTGGAAGA+AGG | 0.416398 | 4_2:+6983683 | None:intergenic |
| GCCACTGAATCATGACGTTC+TGG | 0.419168 | 4_2:+6984716 | None:intergenic |
| TGTTAATGTTTCACCAGATA+AGG | 0.428963 | 4_2:-6982460 | Msa0585880:CDS |
| TCTCTATTAAGTCTTCAAAC+AGG | 0.437119 | 4_2:+6981667 | None:intergenic |
| ATGAATGATATCCTTTGTAA+AGG | 0.439211 | 4_2:+6983430 | None:intergenic |
| ATGTTGTTGCAGATCTGATT+TGG | 0.440413 | 4_2:-6981873 | Msa0585880:intron |
| CGAAGGAAAGTTAGTAGCAT+TGG | 0.440766 | 4_2:-6983380 | Msa0585880:CDS |
| GGTGACTACAGGGGTTGAAA+TGG | 0.443587 | 4_2:-6984338 | Msa0585880:CDS |
| TCTGTTGAATCCCATGGTGC+TGG | 0.448568 | 4_2:-6983284 | Msa0585880:CDS |
| CACCTATGTCTTGGACTTTG+GGG | 0.449353 | 4_2:-6984868 | Msa0585880:CDS |
| ACAAAGATAATTTACTTCAC+AGG | 0.451346 | 4_2:+6984478 | None:intergenic |
| TCAACTGCTTTCATGAGATA+AGG | 0.452458 | 4_2:+6984809 | None:intergenic |
| AAGTAATGTCATTGAATCAA+TGG | 0.458006 | 4_2:-6985081 | Msa0585880:CDS |
| CTCAAATAGAAGTCGACAAA+AGG | 0.458161 | 4_2:-6983040 | Msa0585880:CDS |
| TGAAGACCTTGGTAACTCAT+TGG | 0.459413 | 4_2:-6982839 | Msa0585880:CDS |
| ATCCAAAAGCTTACTGAGAA+AGG | 0.460812 | 4_2:+6984455 | None:intergenic |
| AAAATAATAAATCTAAAGTA+AGG | 0.464205 | 4_2:-6983256 | Msa0585880:CDS |
| TCTTATCCTTTCTGTTAGAA+GGG | 0.471749 | 4_2:+6983933 | None:intergenic |
| AAAAGTAGTTAGGTCTATAG+AGG | 0.474198 | 4_2:-6981788 | Msa0585880:three_prime_UTR |
| CTTAAAATCAGGTGACTACA+GGG | 0.476509 | 4_2:-6984348 | Msa0585880:intron |
| AGATGATTTCACCTATGTCT+TGG | 0.477127 | 4_2:-6984877 | Msa0585880:CDS |
| TTCACTTTCGTCGAGTATCC+CGG | 0.482396 | 4_2:+6985046 | None:intergenic |
| ACCTTAGCAACTATTGATTG+AGG | 0.489861 | 4_2:+6983152 | None:intergenic |
| CTTATTAGATAGTGTAAGAA+AGG | 0.491206 | 4_2:-6984997 | Msa0585880:CDS |
| AAATCTCAAGAATGAGCAAT+GGG | 0.493675 | 4_2:-6982493 | Msa0585880:CDS |
| CTGGAGATTCAGATTTATTG+TGG | 0.499658 | 4_2:+6984735 | None:intergenic |
| ATTCAATGACATTACTTGGA+TGG | 0.502945 | 4_2:+6985087 | None:intergenic |
| TCCTCAATCAATAGTTGCTA+AGG | 0.509624 | 4_2:-6983153 | Msa0585880:CDS |
| CAACAAATCATCTACTAAGA+AGG | 0.514239 | 4_2:-6982985 | Msa0585880:intron |
| CTGTTAGAAGGGTTATCAGA+TGG | 0.516944 | 4_2:+6983944 | None:intergenic |
| AAGGTAGAAAATAGAGCAGA+GGG | 0.517522 | 4_2:-6983074 | Msa0585880:CDS |
| GTCGACTTCTATTTGAGCTG+AGG | 0.518676 | 4_2:+6983046 | None:intergenic |
| TGGATACTGTGCCAAGGAAG+AGG | 0.520681 | 4_2:-6984096 | Msa0585880:CDS |
| CAAAGATAATTTACTTCACA+GGG | 0.522829 | 4_2:+6984479 | None:intergenic |
| ACAAAGGATATCATTCATGA+AGG | 0.527116 | 4_2:-6983425 | Msa0585880:CDS |
| ATTTGACGGTCTAATACCCT+TGG | 0.527702 | 4_2:+6983526 | None:intergenic |
| ACTGAACTCCAAAACTCAGC+TGG | 0.528121 | 4_2:-6984116 | Msa0585880:CDS |
| TAATAAATCTAAAGTAAGGA+AGG | 0.530300 | 4_2:-6983252 | Msa0585880:CDS |
| ATATTTCCTCGGATCTACTT+AGG | 0.532005 | 4_2:-6985022 | Msa0585880:CDS |
| GAGTGATTATAGCCTTCCTC+GGG | 0.533009 | 4_2:+6984046 | None:intergenic |
| ATGAAAGCAGTTGAATCCTC+AGG | 0.533089 | 4_2:-6984800 | Msa0585880:CDS |
| TGGCAATTTAGAGTCAGATC+AGG | 0.535035 | 4_2:-6984140 | Msa0585880:CDS |
| GACCTTGGTAACTCATTGGT+TGG | 0.537219 | 4_2:-6982835 | Msa0585880:CDS |
| TCTTATCCTTTCTGGAAGAA+GGG | 0.540051 | 4_2:+6983684 | None:intergenic |
| TTGGTAAAAGGATCAAGGTC+TGG | 0.544226 | 4_2:-6982816 | Msa0585880:CDS |
| CAAGTCGAGTACAAATACTA+AGG | 0.545604 | 4_2:-6983093 | Msa0585880:CDS |
| ATCGTCGACTGTAGCTGCAT+TGG | 0.547602 | 4_2:+6984255 | None:intergenic |
| GAGAAACATGAGGTACCCAT+TGG | 0.547732 | 4_2:-6983221 | Msa0585880:CDS |
| TGCTACTAACTTTCCTTCGC+CGG | 0.549337 | 4_2:+6983384 | None:intergenic |
| ACCTATGTCTTGGACTTTGG+GGG | 0.551376 | 4_2:-6984867 | Msa0585880:CDS |
| CTGGAAGAAGGGTTATCAGA+TGG | 0.553404 | 4_2:+6983695 | None:intergenic |
| CTGTTGAATCCCATGGTGCT+GGG | 0.554351 | 4_2:-6983283 | Msa0585880:CDS |
| CAGAGCTCTCAATGAGTATG+TGG | 0.556970 | 4_2:-6984777 | Msa0585880:CDS |
| TGATAACCCTTCTAACAGAA+AGG | 0.558007 | 4_2:-6983939 | Msa0585880:CDS |
| ATTGGTTGGTAAAAGGATCA+AGG | 0.559916 | 4_2:-6982821 | Msa0585880:CDS |
| TCAATGGAGATAGTAATGAC+CGG | 0.560099 | 4_2:-6985065 | Msa0585880:CDS |
| AGAGTGATTATAGCCTTCCT+CGG | 0.561513 | 4_2:+6984045 | None:intergenic |
| TGATAACCCTTCTTCCAGAA+AGG | 0.562342 | 4_2:-6983690 | Msa0585880:CDS |
| ACAGAAGTCTTCTTATGCGA+AGG | 0.564966 | 4_2:+6983302 | None:intergenic |
| GAAAGTCCTGATTCTACCAA+GGG | 0.568571 | 4_2:-6983791 | Msa0585880:CDS |
| TCAATCAATAGTTGCTAAGG+TGG | 0.574486 | 4_2:-6983150 | Msa0585880:CDS |
| ACCTTTAAGAGACTTCAACT+TGG | 0.577901 | 4_2:+6982277 | None:intergenic |
| CAATGGAGATAGTAATGACC+GGG | 0.579241 | 4_2:-6985064 | Msa0585880:CDS |
| AAGACTTCTGTTGAATCCCA+TGG | 0.580295 | 4_2:-6983290 | Msa0585880:CDS |
| CTACTAAACGACGCCGGCGA+AGG | 0.581440 | 4_2:-6983397 | Msa0585880:CDS |
| TAGTGTAAGAAAGGAGAACC+AGG | 0.582669 | 4_2:-6984988 | Msa0585880:intron |
| AGTTGCTAAGGTGGAATCTG+AGG | 0.584626 | 4_2:-6983141 | Msa0585880:CDS |
| ACTTGACCGTCTAATACCCT+TGG | 0.585667 | 4_2:+6983775 | None:intergenic |
| GGATACTGTGCCAAGGAAGA+GGG | 0.587491 | 4_2:-6984095 | Msa0585880:CDS |
| AAAAGATGTTCCCTTTACAA+AGG | 0.587511 | 4_2:-6983441 | Msa0585880:CDS |
| GAGTTTGTAATTGGACAAGA+AGG | 0.588790 | 4_2:+6984196 | None:intergenic |
| TAAATCTCAAGAATGAGCAA+TGG | 0.589764 | 4_2:-6982494 | Msa0585880:CDS |
| ATGAAGACGAAGCCGACGGA+CGG | 0.592285 | 4_2:-6986117 | Msa0585880:intron |
| GAAAGTCCTGATTCTACCAA+GGG | 0.595423 | 4_2:-6983542 | Msa0585880:CDS |
| TCCTTAATGAATCCCGAGGA+AGG | 0.597597 | 4_2:-6984058 | Msa0585880:CDS |
| TACCAACCAATGAGTTACCA+AGG | 0.601777 | 4_2:+6982833 | None:intergenic |
| CGAAAGTGAAGATATTTCCT+CGG | 0.607128 | 4_2:-6985033 | Msa0585880:CDS |
| TAAGGTAGAAAATAGAGCAG+AGG | 0.608082 | 4_2:-6983075 | Msa0585880:CDS |
| AATGCTTATGATCATGTCAA+CGG | 0.608579 | 4_2:-6982558 | Msa0585880:CDS |
| TCCATACTGATACCGTCCGT+CGG | 0.614298 | 4_2:+6986105 | None:intergenic |
| CAATTACAAACTCCGAAAGA+CGG | 0.614438 | 4_2:-6984186 | Msa0585880:CDS |
| GTTGTACGACGACGATGTTG+AGG | 0.620195 | 4_2:-6982523 | Msa0585880:CDS |
| CTCAGCTGGATACTGTGCCA+AGG | 0.623764 | 4_2:-6984102 | Msa0585880:CDS |
| TGAAAGTCCTGATTCTACCA+AGG | 0.627911 | 4_2:-6983543 | Msa0585880:CDS |
| TGAAAGTCCTGATTCTACCA+AGG | 0.627911 | 4_2:-6983792 | Msa0585880:CDS |
| GCACATGAACATGAAGACCT+TGG | 0.628436 | 4_2:-6982850 | Msa0585880:CDS |
| TCATGTCAACGGAAAGCACA+AGG | 0.629953 | 4_2:-6982547 | Msa0585880:CDS |
| TCCAGAACGTCATGATTCAG+TGG | 0.630622 | 4_2:-6984717 | Msa0585880:CDS |
| TTAGTTTCGGAATCTAAACA+AGG | 0.632479 | 4_2:-6983473 | Msa0585880:CDS |
| CTCATTGAGAGCTCTGCCTG+AGG | 0.637114 | 4_2:+6984784 | None:intergenic |
| AATTATGGATGAGACAAAGT+CGG | 0.639921 | 4_2:-6984290 | Msa0585880:CDS |
| GAATCAGGACTTTCAATACA+CGG | 0.640219 | 4_2:+6983800 | None:intergenic |
| ATTAGACCGTCAAATCCTGA+AGG | 0.643771 | 4_2:-6983518 | Msa0585880:CDS |
| AAAGTTTGATGGAAAAGTTG+TGG | 0.647463 | 4_2:-6983180 | Msa0585880:CDS |
| TTAGCAACTATTGATTGAGG+AGG | 0.647638 | 4_2:+6983155 | None:intergenic |
| CAGTCAAAGCCTGAAACTGT+CGG | 0.651899 | 4_2:-6983659 | Msa0585880:CDS |
| GTAAAAGGATCAAGGTCTGG+TGG | 0.652291 | 4_2:-6982813 | Msa0585880:CDS |
| TAAGGGCCTAAGTAGATCCG+AGG | 0.654700 | 4_2:+6985016 | None:intergenic |
| CAGTCAAAGCCTGAAACTGT+CGG | 0.664317 | 4_2:-6983908 | Msa0585880:CDS |
| ATTCTACCAAGGGTATTAGA+CGG | 0.669153 | 4_2:-6983781 | Msa0585880:CDS |
| TTAAAATCAGGTGACTACAG+GGG | 0.677994 | 4_2:-6984347 | Msa0585880:intron |
| GGATTCTGAAGAGAAACATG+AGG | 0.679606 | 4_2:-6983231 | Msa0585880:CDS |
| GTAGAAAATAGAGCAGAGGG+AGG | 0.685228 | 4_2:-6983071 | Msa0585880:CDS |
| GAACATGTGAATGTTAACGT+AGG | 0.689287 | 4_2:-6981692 | Msa0585880:three_prime_UTR |
| AAGGAAAGTTAGTAGCATTG+GGG | 0.690442 | 4_2:-6983378 | Msa0585880:CDS |
| TAACTCCTTAATGAATCCCG+AGG | 0.696649 | 4_2:-6984062 | Msa0585880:CDS |
| TTACATGAAGACGAAGCCGA+CGG | 0.699105 | 4_2:-6986121 | Msa0585880:CDS |
| AGAACGTCATGATTCAGTGG+CGG | 0.724032 | 4_2:-6984714 | Msa0585880:intron |
| GAAGCTCTACTAAACGACGC+CGG | 0.767843 | 4_2:-6983403 | Msa0585880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | NNNNNNNNNTGTTTTTTGTT+GGG | + | chr4_2:6981837-6981856 | None:intergenic | 10.0% |
| !!! | NNNNNNNNNNTGTTTTTTGT+TGG | + | chr4_2:6981838-6981857 | None:intergenic | 10.0% |
| !!! | TAATTTTGTTATTTGTTATT+TGG | - | chr4_2:6982843-6982862 | Msa0585880:CDS | 10.0% |
| !!! | AAAATAATAAATCTAAAGTA+AGG | - | chr4_2:6984534-6984553 | Msa0585880:intron | 10.0% |
| !!! | AAGAATTTGAAATTAATGTA+AGG | - | chr4_2:6983213-6983232 | Msa0585880:CDS | 15.0% |
| !! | AAATTATGTATAAAGTTTGA+TGG | - | chr4_2:6984599-6984618 | Msa0585880:intron | 15.0% |
| !!! | AAAAATCTTTACTTTTCTTT+AGG | - | chr4_2:6984918-6984937 | Msa0585880:intron | 15.0% |
| !! | TTCCATTATTATATAATTTG+TGG | - | chr4_2:6985842-6985861 | Msa0585880:intron | 15.0% |
| !! | ATCCACAAATTATATAATAA+TGG | + | chr4_2:6985847-6985866 | None:intergenic | 15.0% |
| !!! | NNNACTTTTTATGTTACTTC+CGG | - | chr4_2:6981945-6981964 | Msa0585880:intron | 20.0% |
| !!! | TATATTGCTAAAAAGTTGAT+TGG | - | chr4_2:6982610-6982629 | Msa0585880:intron | 20.0% |
| !! | TTTCTTACACTATCTAATAA+GGG | + | chr4_2:6982794-6982813 | None:intergenic | 20.0% |
| !! | GATTGACAAAGTAAAATAAA+AGG | + | chr4_2:6982872-6982891 | None:intergenic | 20.0% |
| !!! | TTTTACTTTGTCAATCTTAT+TGG | - | chr4_2:6982876-6982895 | Msa0585880:intron | 20.0% |
| !! | TCTTCATTATTCTTAAAATC+AGG | - | chr4_2:6983431-6983450 | Msa0585880:CDS | 20.0% |
| !! | TAGTTTCTGATCTTAAAAAT+GGG | - | chr4_2:6983913-6983932 | Msa0585880:CDS | 20.0% |
| !!! | ACTTTTATCACAGTTTTTTT+TGG | + | chr4_2:6983961-6983980 | None:intergenic | 20.0% |
| !!! | ACTTTTATCACAGTTTTTTT+TGG | + | chr4_2:6983961-6983980 | None:intergenic | 20.0% |
| !!! | TAATAAATCTAAAGTAAGGA+AGG | - | chr4_2:6984538-6984557 | Msa0585880:intron | 20.0% |
| !!! | CATAATTTGATTTTTCCAAT+GGG | + | chr4_2:6984587-6984606 | None:intergenic | 20.0% |
| !!! | ACATAATTTGATTTTTCCAA+TGG | + | chr4_2:6984588-6984607 | None:intergenic | 20.0% |
| !! | TGTGATAGGTTTTTATTGTT+AGG | - | chr4_2:6981720-6981739 | Msa0585880:three_prime_UTR | 25.0% |
| !! | GTGATAGGTTTTTATTGTTA+GGG | - | chr4_2:6981721-6981740 | Msa0585880:three_prime_UTR | 25.0% |
| ! | TGTCGTGTAATAATTATTAC+AGG | + | chr4_2:6982032-6982051 | None:intergenic | 25.0% |
| ! | TAATAATTATTACACGACAC+TGG | - | chr4_2:6982033-6982052 | Msa0585880:intron | 25.0% |
| ! | TAAAAACAATGCAAAACCAA+AGG | + | chr4_2:6982161-6982180 | None:intergenic | 25.0% |
| ! | ATTTATCTAACAGTAGCTTA+AGG | + | chr4_2:6982497-6982516 | None:intergenic | 25.0% |
| !!! | TTTTTAGCAATATAAGCAAG+GGG | + | chr4_2:6982604-6982623 | None:intergenic | 25.0% |
| !!! | CTTTTTAGCAATATAAGCAA+GGG | + | chr4_2:6982605-6982624 | None:intergenic | 25.0% |
| !!! | ACTTTTTAGCAATATAAGCA+AGG | + | chr4_2:6982606-6982625 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTCATTCACTTT+TGG | - | chr4_2:6982653-6982672 | Msa0585880:intron | 25.0% |
| !! | ATTGATTCAATGACATTACT+TGG | + | chr4_2:6982710-6982729 | None:intergenic | 25.0% |
| ! | AAGTAATGTCATTGAATCAA+TGG | - | chr4_2:6982709-6982728 | Msa0585880:intron | 25.0% |
| ! | CTTTCTTACACTATCTAATA+AGG | + | chr4_2:6982795-6982814 | None:intergenic | 25.0% |
| ! | CTTATTAGATAGTGTAAGAA+AGG | - | chr4_2:6982793-6982812 | Msa0585880:intron | 25.0% |
| !! | CTTCAAAAGAATTAGTTTGA+AGG | + | chr4_2:6983162-6983181 | None:intergenic | 25.0% |
| ! | CAAAGATAATTTACTTCACA+GGG | + | chr4_2:6983314-6983333 | None:intergenic | 25.0% |
| ! | ACAAAGATAATTTACTTCAC+AGG | + | chr4_2:6983315-6983334 | None:intergenic | 25.0% |
| !! | CAAAAAGTTCTGATTCAAAA+AGG | - | chr4_2:6983565-6983584 | Msa0585880:CDS | 25.0% |
| ! | CTAGTTTCTGATCTTAAAAA+TGG | - | chr4_2:6983912-6983931 | Msa0585880:CDS | 25.0% |
| !!! | ACATTTTTAAGATCAGAAAC+TGG | + | chr4_2:6984164-6984183 | None:intergenic | 25.0% |
| ! | TGAATGATATCCTTTGTAAA+GGG | + | chr4_2:6984362-6984381 | None:intergenic | 25.0% |
| ! | ATGAATGATATCCTTTGTAA+AGG | + | chr4_2:6984363-6984382 | None:intergenic | 25.0% |
| ! | AAAACTTCTACTTCTGATAA+AGG | - | chr4_2:6984779-6984798 | Msa0585880:CDS | 25.0% |
| ! | ATAACGAAGAATAATGATGA+TGG | + | chr4_2:6984884-6984903 | None:intergenic | 25.0% |
| !!! | AAGTAATCTTACTTTGAAAC+TGG | + | chr4_2:6985077-6985096 | None:intergenic | 25.0% |
| ! | GTTTCAAAGTAAGATTACTT+TGG | - | chr4_2:6985077-6985096 | Msa0585880:CDS | 25.0% |
| ! | ATTTGAGAAAATGTAAGTGT+CGG | - | chr4_2:6985625-6985644 | Msa0585880:intron | 25.0% |
| ! | AAGTAAACCTGCTATATTAT+GGG | + | chr4_2:6985762-6985781 | None:intergenic | 25.0% |
| ! | AAAGTAAACCTGCTATATTA+TGG | + | chr4_2:6985763-6985782 | None:intergenic | 25.0% |
| !! | AATAGAACCAGTTTGTTTAT+TGG | + | chr4_2:6985824-6985843 | None:intergenic | 25.0% |
| ! | AATGTGCATACTGTATATAT+TGG | - | chr4_2:6986076-6986095 | Msa0585880:intron | 25.0% |
| GTTATGTAATCGATAATCGA+AGG | - | chr4_2:6982265-6982284 | Msa0585880:intron | 30.0% | |
| AAAACTTTGTTGAGTCCTTA+GGG | - | chr4_2:6982288-6982307 | Msa0585880:CDS | 30.0% | |
| AGTGAATGAAAACTTGAAAG+TGG | + | chr4_2:6982651-6982670 | None:intergenic | 30.0% | |
| GTATTGTTCGCTCAATTTAA+AGG | - | chr4_2:6982675-6982694 | Msa0585880:intron | 30.0% | |
| ATTCAATGACATTACTTGGA+TGG | + | chr4_2:6982706-6982725 | None:intergenic | 30.0% | |
| ! | TTTAAGTTTGACAGCACAAT+TGG | + | chr4_2:6982961-6982980 | None:intergenic | 30.0% |
| AACAACAACAACAACAGTTA+AGG | + | chr4_2:6983109-6983128 | None:intergenic | 30.0% | |
| ACTTTGTCTCATCCATAATT+TGG | + | chr4_2:6983500-6983519 | None:intergenic | 30.0% | |
| AATTATGGATGAGACAAAGT+CGG | - | chr4_2:6983500-6983519 | Msa0585880:CDS | 30.0% | |
| !! | GCAAAAACTAATTCTGAAAC+TGG | - | chr4_2:6983630-6983649 | Msa0585880:CDS | 30.0% |
| ATCATCTCAATCCAACAAAA+AGG | - | chr4_2:6983797-6983816 | Msa0585880:CDS | 30.0% | |
| TCTTATCCTTTCTGTTAGAA+GGG | + | chr4_2:6983860-6983879 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTTTGGATTTAGC+AGG | + | chr4_2:6983951-6983970 | None:intergenic | 30.0% |
| ATCATCTCAATCCAACAAAA+AGG | - | chr4_2:6983797-6983816 | Msa0585880:CDS | 30.0% | |
| !!! | CAGTTTTTTTTGGATTTAGC+AGG | + | chr4_2:6983951-6983970 | None:intergenic | 30.0% |
| TTAGTTTCGGAATCTAAACA+AGG | - | chr4_2:6984317-6984336 | Msa0585880:CDS | 30.0% | |
| AAAAGATGTTCCCTTTACAA+AGG | - | chr4_2:6984349-6984368 | Msa0585880:intron | 30.0% | |
| ACAAAGGATATCATTCATGA+AGG | - | chr4_2:6984365-6984384 | Msa0585880:intron | 30.0% | |
| TCAATATTGACGCAGAATTA+GGG | + | chr4_2:6984451-6984470 | None:intergenic | 30.0% | |
| TTCAATATTGACGCAGAATT+AGG | + | chr4_2:6984452-6984471 | None:intergenic | 30.0% | |
| AAAGTTTGATGGAAAAGTTG+TGG | - | chr4_2:6984610-6984629 | Msa0585880:intron | 30.0% | |
| CAACAAATCATCTACTAAGA+AGG | - | chr4_2:6984805-6984824 | Msa0585880:CDS | 30.0% | |
| GATTCTTACATCTTGTCTAA+TGG | + | chr4_2:6985003-6985022 | None:intergenic | 30.0% | |
| ! | TGTGTGTAATTATTTTCTGC+AGG | - | chr4_2:6985191-6985210 | Msa0585880:intron | 30.0% |
| ! | ATTTTCTGCAGGTATTATGA+AGG | - | chr4_2:6985202-6985221 | Msa0585880:intron | 30.0% |
| AATGCTTATGATCATGTCAA+CGG | - | chr4_2:6985232-6985251 | Msa0585880:intron | 30.0% | |
| TAAATCTCAAGAATGAGCAA+TGG | - | chr4_2:6985296-6985315 | Msa0585880:intron | 30.0% | |
| AAATCTCAAGAATGAGCAAT+GGG | - | chr4_2:6985297-6985316 | Msa0585880:intron | 30.0% | |
| TGTTAATGTTTCACCAGATA+AGG | - | chr4_2:6985330-6985349 | Msa0585880:intron | 30.0% | |
| !! | AGTTTTGTACTAACCTTATC+TGG | + | chr4_2:6985346-6985365 | None:intergenic | 30.0% |
| ATGAGATACATGATAGTACA+AGG | + | chr4_2:6985461-6985480 | None:intergenic | 30.0% | |
| TTTCCATCCAATAAACAAAC+TGG | - | chr4_2:6985814-6985833 | Msa0585880:intron | 30.0% | |
| !! | TGATTTGGTTGATGATTTCA+TGG | - | chr4_2:6985932-6985951 | Msa0585880:intron | 30.0% |
| !! | CTTCATTCTTTTGGTGATAT+AGG | + | chr4_2:6985966-6985985 | None:intergenic | 30.0% |
| ! | TGAATCAGTCTTCATTCTTT+TGG | + | chr4_2:6985975-6985994 | None:intergenic | 30.0% |
| !! | CTATAGACCTAACTACTTTT+TGG | + | chr4_2:6986002-6986021 | None:intergenic | 30.0% |
| AAAAGTAGTTAGGTCTATAG+AGG | - | chr4_2:6986002-6986021 | Msa0585880:intron | 30.0% | |
| TATGGTACTTTCTGTTAGAA+TGG | - | chr4_2:6986039-6986058 | Msa0585880:intron | 30.0% | |
| TCTCTATTAAGTCTTCAAAC+AGG | + | chr4_2:6986126-6986145 | None:intergenic | 30.0% | |
| ! | GGTTTTTATTGTTAGGGTTG+CGG | - | chr4_2:6981727-6981746 | Msa0585880:three_prime_UTR | 35.0% |
| ATCTATACCCATTCTGTTCT+TGG | + | chr4_2:6981791-6981810 | None:intergenic | 35.0% | |
| TGTGTCAGTGTTACATAAAC+CGG | + | chr4_2:6981967-6981986 | None:intergenic | 35.0% | |
| ! | ACCTCTTCAATCTAAAGTGT+CGG | - | chr4_2:6982104-6982123 | Msa0585880:intron | 35.0% |
| AACAATGCAAAACCAAAGGA+AGG | + | chr4_2:6982157-6982176 | None:intergenic | 35.0% | |
| CAAAGATTTGCAACAAAGCA+CGG | + | chr4_2:6982214-6982233 | None:intergenic | 35.0% | |
| ! | ACTCTCTTTTCTACAAGCTT+GGG | + | chr4_2:6982247-6982266 | None:intergenic | 35.0% |
| ! | AACTCTCTTTTCTACAAGCT+TGG | + | chr4_2:6982248-6982267 | None:intergenic | 35.0% |
| GAAAACTTTGTTGAGTCCTT+AGG | - | chr4_2:6982287-6982306 | Msa0585880:CDS | 35.0% | |
| TCTGATAAGTCATTGCTCAT+AGG | - | chr4_2:6982336-6982355 | Msa0585880:intron | 35.0% | |
| AGCTTAAGGCTTAAGCTATT+AGG | + | chr4_2:6982483-6982502 | None:intergenic | 35.0% | |
| TCAATGGAGATAGTAATGAC+CGG | - | chr4_2:6982725-6982744 | Msa0585880:intron | 35.0% | |
| CGAAAGTGAAGATATTTCCT+CGG | - | chr4_2:6982757-6982776 | Msa0585880:intron | 35.0% | |
| ATATTTCCTCGGATCTACTT+AGG | - | chr4_2:6982768-6982787 | Msa0585880:intron | 35.0% | |
| ATAATGCAAAGCATGTTACC+TGG | + | chr4_2:6982823-6982842 | None:intergenic | 35.0% | |
| AGACATAGGTGAAATCATCT+GGG | + | chr4_2:6982913-6982932 | None:intergenic | 35.0% | |
| AAGACATAGGTGAAATCATC+TGG | + | chr4_2:6982914-6982933 | None:intergenic | 35.0% | |
| AGATGATTTCACCTATGTCT+TGG | - | chr4_2:6982913-6982932 | Msa0585880:intron | 35.0% | |
| TCAACTGCTTTCATGAGATA+AGG | + | chr4_2:6982984-6983003 | None:intergenic | 35.0% | |
| CTGGAGATTCAGATTTATTG+TGG | + | chr4_2:6983058-6983077 | None:intergenic | 35.0% | |
| !!! | TCTTTTGAAGAAGTGCTAAG+TGG | - | chr4_2:6983172-6983191 | Msa0585880:CDS | 35.0% |
| ATCCAAAAGCTTACTGAGAA+AGG | + | chr4_2:6983338-6983357 | None:intergenic | 35.0% | |
| TTCACTCACAATTATAACGC+TGG | - | chr4_2:6983368-6983387 | Msa0585880:CDS | 35.0% | |
| TCTTAAAATCAGGTGACTAC+AGG | - | chr4_2:6983441-6983460 | Msa0585880:CDS | 35.0% | |
| CTTAAAATCAGGTGACTACA+GGG | - | chr4_2:6983442-6983461 | Msa0585880:CDS | 35.0% | |
| TTAAAATCAGGTGACTACAG+GGG | - | chr4_2:6983443-6983462 | Msa0585880:CDS | 35.0% | |
| TGTGAGAGATGTCCAAATTA+TGG | - | chr4_2:6983485-6983504 | Msa0585880:CDS | 35.0% | |
| GAGTTTGTAATTGGACAAGA+AGG | + | chr4_2:6983597-6983616 | None:intergenic | 35.0% | |
| CAATTACAAACTCCGAAAGA+CGG | - | chr4_2:6983604-6983623 | Msa0585880:CDS | 35.0% | |
| ! | AGTTTTTGCATTCCGTCTTT+CGG | + | chr4_2:6983619-6983638 | None:intergenic | 35.0% |
| TGATAACCCTTCTAACAGAA+AGG | - | chr4_2:6983851-6983870 | Msa0585880:CDS | 35.0% | |
| GTCTTATCCTTTCTGTTAGA+AGG | + | chr4_2:6983861-6983880 | None:intergenic | 35.0% | |
| GAATCAGGACTTTCAATACA+CGG | + | chr4_2:6983993-6984012 | None:intergenic | 35.0% | |
| !! | ATTCTACCAAGGGTATTAGA+CGG | - | chr4_2:6984009-6984028 | Msa0585880:CDS | 35.0% |
| ! | TCTTATCCTTTCTGGAAGAA+GGG | + | chr4_2:6984109-6984128 | None:intergenic | 35.0% |
| ! | AACTCCAGAAGCTTTAGTTT+CGG | - | chr4_2:6984304-6984323 | Msa0585880:CDS | 35.0% |
| GAAGGAAAGTTAGTAGCATT+GGG | - | chr4_2:6984411-6984430 | Msa0585880:intron | 35.0% | |
| AAGGAAAGTTAGTAGCATTG+GGG | - | chr4_2:6984412-6984431 | Msa0585880:intron | 35.0% | |
| ! | TTAGCAACTATTGATTGAGG+AGG | + | chr4_2:6984638-6984657 | None:intergenic | 35.0% |
| TCCTCAATCAATAGTTGCTA+AGG | - | chr4_2:6984637-6984656 | Msa0585880:intron | 35.0% | |
| ! | ACCTTAGCAACTATTGATTG+AGG | + | chr4_2:6984641-6984660 | None:intergenic | 35.0% |
| TCAATCAATAGTTGCTAAGG+TGG | - | chr4_2:6984640-6984659 | Msa0585880:intron | 35.0% | |
| CAAGTCGAGTACAAATACTA+AGG | - | chr4_2:6984697-6984716 | Msa0585880:intron | 35.0% | |
| TAAGGTAGAAAATAGAGCAG+AGG | - | chr4_2:6984715-6984734 | Msa0585880:CDS | 35.0% | |
| AAGGTAGAAAATAGAGCAGA+GGG | - | chr4_2:6984716-6984735 | Msa0585880:CDS | 35.0% | |
| CTCAAATAGAAGTCGACAAA+AGG | - | chr4_2:6984750-6984769 | Msa0585880:CDS | 35.0% | |
| !! | GTAACTCATTGGTTGGTAAA+AGG | - | chr4_2:6984962-6984981 | Msa0585880:intron | 35.0% |
| !! | ATTGGTTGGTAAAAGGATCA+AGG | - | chr4_2:6984969-6984988 | Msa0585880:intron | 35.0% |
| TCATGTATCTCATTATGTGC+AGG | - | chr4_2:6985468-6985487 | Msa0585880:intron | 35.0% | |
| CATGTATCTCATTATGTGCA+GGG | - | chr4_2:6985469-6985488 | Msa0585880:intron | 35.0% | |
| ! | ACCTTTAAGAGACTTCAACT+TGG | + | chr4_2:6985516-6985535 | None:intergenic | 35.0% |
| ATTATTACTGTCCGATGTGT+CGG | + | chr4_2:6985607-6985626 | None:intergenic | 35.0% | |
| CAAAAAGCCCATAATATAGC+AGG | - | chr4_2:6985752-6985771 | Msa0585880:intron | 35.0% | |
| ! | GAACCAGTTTGTTTATTGGA+TGG | + | chr4_2:6985820-6985839 | None:intergenic | 35.0% |
| ATGTTGTTGCAGATCTGATT+TGG | - | chr4_2:6985917-6985936 | Msa0585880:intron | 35.0% | |
| !! | CATTCTTTTGGTGATATAGG+TGG | + | chr4_2:6985963-6985982 | None:intergenic | 35.0% |
| TCACACACCAAAAAGTAGTT+AGG | - | chr4_2:6985992-6986011 | Msa0585880:intron | 35.0% | |
| GAGGAATGTGTCAAACTTTA+TGG | - | chr4_2:6986021-6986040 | Msa0585880:intron | 35.0% | |
| GAACATGTGAATGTTAACGT+AGG | - | chr4_2:6986098-6986117 | Msa0585880:intron | 35.0% | |
| ! | GATGAAAGTGAGAGTGTGAT+AGG | - | chr4_2:6981706-6981725 | Msa0585880:three_prime_UTR | 40.0% |
| TTATTACACGACACTGGCAT+TGG | - | chr4_2:6982039-6982058 | Msa0585880:intron | 40.0% | |
| TGATTCAACAACGACACATG+TGG | + | chr4_2:6982068-6982087 | None:intergenic | 40.0% | |
| GTTGAATCAGTGTCAGACAT+CGG | - | chr4_2:6982079-6982098 | Msa0585880:intron | 40.0% | |
| ACCGACACTTTAGATTGAAG+AGG | + | chr4_2:6982108-6982127 | None:intergenic | 40.0% | |
| TGAAACTTGATGCCTTCCTT+TGG | - | chr4_2:6982142-6982161 | Msa0585880:intron | 40.0% | |
| GTTGCAAATCTTTGCATGAC+CGG | - | chr4_2:6982220-6982239 | Msa0585880:intron | 40.0% | |
| ACGGATCATCTACGTGATAA+TGG | - | chr4_2:6982312-6982331 | Msa0585880:intron | 40.0% | |
| TGCTCATAGGAAACATTTCG+TGG | - | chr4_2:6982349-6982368 | Msa0585880:intron | 40.0% | |
| CATTTCGTGGAAAAAAGCTC+TGG | - | chr4_2:6982362-6982381 | Msa0585880:intron | 40.0% | |
| ! | AATCAGAGCCTTTTCACACT+AGG | + | chr4_2:6982416-6982435 | None:intergenic | 40.0% |
| AGGCTTAAGCTATTAGGTGA+AGG | + | chr4_2:6982477-6982496 | None:intergenic | 40.0% | |
| CAATGGAGATAGTAATGACC+GGG | - | chr4_2:6982726-6982745 | Msa0585880:intron | 40.0% | |
| TAGTGTAAGAAAGGAGAACC+AGG | - | chr4_2:6982802-6982821 | Msa0585880:CDS | 40.0% | |
| GACATAGGTGAAATCATCTG+GGG | + | chr4_2:6982912-6982931 | None:intergenic | 40.0% | |
| TTCACCTATGTCTTGGACTT+TGG | - | chr4_2:6982920-6982939 | Msa0585880:intron | 40.0% | |
| TCACCTATGTCTTGGACTTT+GGG | - | chr4_2:6982921-6982940 | Msa0585880:intron | 40.0% | |
| ATGAAAGCAGTTGAATCCTC+AGG | - | chr4_2:6982990-6983009 | Msa0585880:CDS | 40.0% | |
| TGATTGTGTTGCAATGCTTC+AGG | - | chr4_2:6983238-6983257 | Msa0585880:CDS | 40.0% | |
| TTTACTTCACAGGGTTCTTC+AGG | + | chr4_2:6983305-6983324 | None:intergenic | 40.0% | |
| ! | GTCCTTTCTCAGTAAGCTTT+TGG | - | chr4_2:6983333-6983352 | Msa0585880:CDS | 40.0% |
| CGTCTTTCGGAGTTTGTAAT+TGG | + | chr4_2:6983606-6983625 | None:intergenic | 40.0% | |
| ! | TGGCAATTTAGAGTCAGATC+AGG | - | chr4_2:6983650-6983669 | Msa0585880:CDS | 40.0% |
| TCGGGATTCATTAAGGAGTT+AGG | + | chr4_2:6983729-6983748 | None:intergenic | 40.0% | |
| TAACTCCTTAATGAATCCCG+AGG | - | chr4_2:6983728-6983747 | Msa0585880:CDS | 40.0% | |
| AGAGTGATTATAGCCTTCCT+CGG | + | chr4_2:6983748-6983767 | None:intergenic | 40.0% | |
| ! | GTCATCATGAGCCTTTTTGT+TGG | + | chr4_2:6983811-6983830 | None:intergenic | 40.0% |
| CTGTTAGAAGGGTTATCAGA+TGG | + | chr4_2:6983849-6983868 | None:intergenic | 40.0% | |
| TGAAAGTCCTGATTCTACCA+AGG | - | chr4_2:6983998-6984017 | Msa0585880:CDS | 40.0% | |
| GAAAGTCCTGATTCTACCAA+GGG | - | chr4_2:6983999-6984018 | Msa0585880:CDS | 40.0% | |
| CTAATACCCTTGGTAGAATC+AGG | + | chr4_2:6984008-6984027 | None:intergenic | 40.0% | |
| ! | GTCATCATGAGCCTTTTTGT+TGG | + | chr4_2:6983811-6983830 | None:intergenic | 40.0% |
| TGATAACCCTTCTTCCAGAA+AGG | - | chr4_2:6984100-6984119 | Msa0585880:CDS | 40.0% | |
| ! | GTCTTATCCTTTCTGGAAGA+AGG | + | chr4_2:6984110-6984129 | None:intergenic | 40.0% |
| TGAAAGTCCTGATTCTACCA+AGG | - | chr4_2:6983998-6984017 | Msa0585880:CDS | 40.0% | |
| GAAAGTCCTGATTCTACCAA+GGG | - | chr4_2:6983999-6984018 | Msa0585880:CDS | 40.0% | |
| CTAATACCCTTGGTAGAATC+AGG | + | chr4_2:6984008-6984027 | None:intergenic | 40.0% | |
| ATTTGACGGTCTAATACCCT+TGG | + | chr4_2:6984267-6984286 | None:intergenic | 40.0% | |
| ATTAGACCGTCAAATCCTGA+AGG | - | chr4_2:6984272-6984291 | Msa0585880:CDS | 40.0% | |
| CTCATACCTTCAGGATTTGA+CGG | + | chr4_2:6984281-6984300 | None:intergenic | 40.0% | |
| GATTCCGAAACTAAAGCTTC+TGG | + | chr4_2:6984311-6984330 | None:intergenic | 40.0% | |
| CGAAGGAAAGTTAGTAGCAT+TGG | - | chr4_2:6984410-6984429 | Msa0585880:intron | 40.0% | |
| ACAGAAGTCTTCTTATGCGA+AGG | + | chr4_2:6984491-6984510 | None:intergenic | 40.0% | |
| AAGACTTCTGTTGAATCCCA+TGG | - | chr4_2:6984500-6984519 | Msa0585880:CDS | 40.0% | |
| ! | ATTTTTCTTCCCAGCACCAT+GGG | + | chr4_2:6984519-6984538 | None:intergenic | 40.0% |
| ! | TATTTTTCTTCCCAGCACCA+TGG | + | chr4_2:6984520-6984539 | None:intergenic | 40.0% |
| ! | GGATTCTGAAGAGAAACATG+AGG | - | chr4_2:6984559-6984578 | Msa0585880:intron | 40.0% |
| ! | TGAAGACCTTGGTAACTCAT+TGG | - | chr4_2:6984951-6984970 | Msa0585880:intron | 40.0% |
| TACCAACCAATGAGTTACCA+AGG | + | chr4_2:6984960-6984979 | None:intergenic | 40.0% | |
| TTGGTAAAAGGATCAAGGTC+TGG | - | chr4_2:6984974-6984993 | Msa0585880:intron | 40.0% | |
| !! | ACTTTGGTCTTAGCTACACT+AGG | - | chr4_2:6985093-6985112 | Msa0585880:CDS | 40.0% |
| ACTTTCATATTAGATGCCCC+TGG | + | chr4_2:6985432-6985451 | None:intergenic | 40.0% | |
| ! | GCCAAGTTGAAGTCTCTTAA+AGG | - | chr4_2:6985512-6985531 | Msa0585880:intron | 40.0% |
| AATGCAAACTCACCTGGATA+GGG | + | chr4_2:6985547-6985566 | None:intergenic | 40.0% | |
| !! | ACTTTAAAGCACCGACACAT+CGG | - | chr4_2:6985593-6985612 | Msa0585880:intron | 40.0% |
| CATATGTCAGTGTCACACAA+CGG | - | chr4_2:6985655-6985674 | Msa0585880:intron | 40.0% | |
| ! | ACACCTTCAATCTGAAGTGT+CGG | - | chr4_2:6985680-6985699 | Msa0585880:intron | 40.0% |
| TGCTGCACTAGTTAGTAAGT+GGG | - | chr4_2:6985703-6985722 | Msa0585880:intron | 40.0% | |
| TTGAGAGTCACTTCTACTAC+TGG | + | chr4_2:6985735-6985754 | None:intergenic | 40.0% | |
| TTACATGAAGACGAAGCCGA+CGG | - | chr4_2:6981669-6981688 | Msa0585880:three_prime_UTR | 45.0% | |
| ATCACTCACTACTGCATGCA+TGG | - | chr4_2:6981764-6981783 | Msa0585880:three_prime_UTR | 45.0% | |
| TCACTCACTACTGCATGCAT+GGG | - | chr4_2:6981765-6981784 | Msa0585880:three_prime_UTR | 45.0% | |
| ACAAATACCAGACACGACAC+TGG | - | chr4_2:6981990-6982009 | Msa0585880:intron | 45.0% | |
| ! | CTTTTCTACAAGCTTGGGAC+CGG | + | chr4_2:6982242-6982261 | None:intergenic | 45.0% |
| TTTGTTGAGTCCTTAGGGCA+CGG | - | chr4_2:6982293-6982312 | Msa0585880:CDS | 45.0% | |
| ! | CTTTTCACACTAGGTGAGGT+TGG | + | chr4_2:6982407-6982426 | None:intergenic | 45.0% |
| CAACCTCACCTAGTGTGAAA+AGG | - | chr4_2:6982405-6982424 | Msa0585880:intron | 45.0% | |
| TTCACTTTCGTCGAGTATCC+CGG | + | chr4_2:6982747-6982766 | None:intergenic | 45.0% | |
| CACCTATGTCTTGGACTTTG+GGG | - | chr4_2:6982922-6982941 | Msa0585880:intron | 45.0% | |
| ACCTATGTCTTGGACTTTGG+GGG | - | chr4_2:6982923-6982942 | Msa0585880:intron | 45.0% | |
| CAGAGCTCTCAATGAGTATG+TGG | - | chr4_2:6983013-6983032 | Msa0585880:CDS | 45.0% | |
| TCCAGAACGTCATGATTCAG+TGG | - | chr4_2:6983073-6983092 | Msa0585880:CDS | 45.0% | |
| AGAACGTCATGATTCAGTGG+CGG | - | chr4_2:6983076-6983095 | Msa0585880:CDS | 45.0% | |
| ! | TGTTGCAATGCTTCAGGTTC+AGG | - | chr4_2:6983244-6983263 | Msa0585880:CDS | 45.0% |
| !! | GGTTCTTCAGGAGCATCTTT+AGG | + | chr4_2:6983293-6983312 | None:intergenic | 45.0% |
| !! | CGCTGGCTTCATCAAATCAT+TGG | - | chr4_2:6983385-6983404 | Msa0585880:CDS | 45.0% |
| ACTGAACTCCAAAACTCAGC+TGG | - | chr4_2:6983674-6983693 | Msa0585880:CDS | 45.0% | |
| ! | CACAGTATCCAGCTGAGTTT+TGG | + | chr4_2:6983685-6983704 | None:intergenic | 45.0% |
| TCCTTAATGAATCCCGAGGA+AGG | - | chr4_2:6983732-6983751 | Msa0585880:CDS | 45.0% | |
| GAGTGATTATAGCCTTCCTC+GGG | + | chr4_2:6983747-6983766 | None:intergenic | 45.0% | |
| CAGTCAAAGCCTGAAACTGT+CGG | - | chr4_2:6983882-6983901 | Msa0585880:CDS | 45.0% | |
| ACTTGACCGTCTAATACCCT+TGG | + | chr4_2:6984018-6984037 | None:intergenic | 45.0% | |
| CTGGAAGAAGGGTTATCAGA+TGG | + | chr4_2:6984098-6984117 | None:intergenic | 45.0% | |
| TGACTGCGTCTTATCCTTTC+TGG | + | chr4_2:6984117-6984136 | None:intergenic | 45.0% | |
| CAGTCAAAGCCTGAAACTGT+CGG | - | chr4_2:6983882-6983901 | Msa0585880:CDS | 45.0% | |
| ! | GGAGTTTTGCTCATACCTTC+AGG | + | chr4_2:6984290-6984309 | None:intergenic | 45.0% |
| TGCTACTAACTTTCCTTCGC+CGG | + | chr4_2:6984409-6984428 | None:intergenic | 45.0% | |
| ! | GAGAAACATGAGGTACCCAT+TGG | - | chr4_2:6984569-6984588 | Msa0585880:intron | 45.0% |
| AGTTGCTAAGGTGGAATCTG+AGG | - | chr4_2:6984649-6984668 | Msa0585880:intron | 45.0% | |
| GTAGAAAATAGAGCAGAGGG+AGG | - | chr4_2:6984719-6984738 | Msa0585880:CDS | 45.0% | |
| ! | GTCGACTTCTATTTGAGCTG+AGG | + | chr4_2:6984747-6984766 | None:intergenic | 45.0% |
| GCACATGAACATGAAGACCT+TGG | - | chr4_2:6984940-6984959 | Msa0585880:intron | 45.0% | |
| ! | GACCTTGGTAACTCATTGGT+TGG | - | chr4_2:6984955-6984974 | Msa0585880:intron | 45.0% |
| GTAAAAGGATCAAGGTCTGG+TGG | - | chr4_2:6984977-6984996 | Msa0585880:intron | 45.0% | |
| ! | TCATGTCAACGGAAAGCACA+AGG | - | chr4_2:6985243-6985262 | Msa0585880:intron | 45.0% |
| AGGTGAAAAGATCCCTATCC+AGG | - | chr4_2:6985532-6985551 | Msa0585880:intron | 45.0% | |
| GAATGCAAACTCACCTGGAT+AGG | + | chr4_2:6985548-6985567 | None:intergenic | 45.0% | |
| TGCATTCGAGGCAAGACATT+TGG | - | chr4_2:6985561-6985580 | Msa0585880:intron | 45.0% | |
| GCATTCGAGGCAAGACATTT+GGG | - | chr4_2:6985562-6985581 | Msa0585880:intron | 45.0% | |
| GTGCTGCACTAGTTAGTAAG+TGG | - | chr4_2:6985702-6985721 | Msa0585880:intron | 45.0% | |
| GTCACTTCTACTACTGGACT+CGG | + | chr4_2:6985729-6985748 | None:intergenic | 45.0% | |
| TCCATACTGATACCGTCCGT+CGG | + | chr4_2:6981688-6981707 | None:intergenic | 50.0% | |
| TGCATGGGCCAAGAACAGAA+TGG | - | chr4_2:6981780-6981799 | Msa0585880:three_prime_UTR | 50.0% | |
| GCATGGGCCAAGAACAGAAT+GGG | - | chr4_2:6981781-6981800 | Msa0585880:three_prime_UTR | 50.0% | |
| ! | GAGCCTTTTCACACTAGGTG+AGG | + | chr4_2:6982411-6982430 | None:intergenic | 50.0% |
| TAAGGGCCTAAGTAGATCCG+AGG | + | chr4_2:6982777-6982796 | None:intergenic | 50.0% | |
| TCCCCCAAAGTCCAAGACAT+AGG | + | chr4_2:6982927-6982946 | None:intergenic | 50.0% | |
| GCCACTGAATCATGACGTTC+TGG | + | chr4_2:6983077-6983096 | None:intergenic | 50.0% | |
| GGTGACTACAGGGGTTGAAA+TGG | - | chr4_2:6983452-6983471 | Msa0585880:CDS | 50.0% | |
| ! | ATCGTCGACTGTAGCTGCAT+TGG | + | chr4_2:6983538-6983557 | None:intergenic | 50.0% |
| TGGATACTGTGCCAAGGAAG+AGG | - | chr4_2:6983694-6983713 | Msa0585880:CDS | 50.0% | |
| GGATACTGTGCCAAGGAAGA+GGG | - | chr4_2:6983695-6983714 | Msa0585880:CDS | 50.0% | |
| GCCTTCCTCGGGATTCATTA+AGG | + | chr4_2:6983736-6983755 | None:intergenic | 50.0% | |
| AGAGCTTCACCGACAGTTTC+AGG | + | chr4_2:6983894-6983913 | None:intergenic | 50.0% | |
| GAAGCTCTACTAAACGACGC+CGG | - | chr4_2:6984387-6984406 | Msa0585880:intron | 50.0% | |
| TCTGTTGAATCCCATGGTGC+TGG | - | chr4_2:6984506-6984525 | Msa0585880:CDS | 50.0% | |
| CTGTTGAATCCCATGGTGCT+GGG | - | chr4_2:6984507-6984526 | Msa0585880:CDS | 50.0% | |
| GTTGTACGACGACGATGTTG+AGG | - | chr4_2:6985267-6985286 | Msa0585880:intron | 50.0% | |
| TCGCGCATACTGATACTTCC+AGG | - | chr4_2:6985411-6985430 | Msa0585880:intron | 50.0% | |
| CGCGCATACTGATACTTCCA+GGG | - | chr4_2:6985412-6985431 | Msa0585880:intron | 50.0% | |
| GCGCATACTGATACTTCCAG+GGG | - | chr4_2:6985413-6985432 | Msa0585880:intron | 50.0% | |
| TCCAGGTGAGTTTGCATTCG+AGG | - | chr4_2:6985549-6985568 | Msa0585880:intron | 50.0% | |
| ! | GCACCGACACTTCAGATTGA+AGG | + | chr4_2:6985686-6985705 | None:intergenic | 50.0% |
| ATGAAGACGAAGCCGACGGA+CGG | - | chr4_2:6981673-6981692 | Msa0585880:three_prime_UTR | 55.0% | |
| ACCAGACACGACACTGGCAT+TGG | - | chr4_2:6981996-6982015 | Msa0585880:intron | 55.0% | |
| ACCAATGCCAGTGTCGTGTC+TGG | + | chr4_2:6982000-6982019 | None:intergenic | 55.0% | |
| CGTAGATGATCCGTGCCCTA+AGG | + | chr4_2:6982306-6982325 | None:intergenic | 55.0% | |
| ! | ACTAGGTGAGGTTGGCTGCA+TGG | + | chr4_2:6982399-6982418 | None:intergenic | 55.0% |
| CTCATTGAGAGCTCTGCCTG+AGG | + | chr4_2:6983009-6983028 | None:intergenic | 55.0% | |
| CTCAGCTGGATACTGTGCCA+AGG | - | chr4_2:6983688-6983707 | Msa0585880:CDS | 55.0% | |
| GGAGCTTCACCGACAGTTTC+AGG | + | chr4_2:6984143-6984162 | None:intergenic | 55.0% | |
| GCCTCGAATGCAAACTCACC+TGG | + | chr4_2:6985553-6985572 | None:intergenic | 55.0% | |
| GCCGACGGACGGTATCAGTA+TGG | - | chr4_2:6981684-6981703 | Msa0585880:three_prime_UTR | 60.0% | |
| GGCTTACGTGCCCTCTTCCT+TGG | + | chr4_2:6983708-6983727 | None:intergenic | 60.0% | |
| CTACTAAACGACGCCGGCGA+AGG | - | chr4_2:6984393-6984412 | Msa0585880:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6981648 | 6986164 | 6981648 | ID=Msa0585880;Name=Msa0585880 |
| chr4_2 | mRNA | 6981648 | 6986164 | 6981648 | ID=Msa0585880-mRNA-1;Parent=Msa0585880;Name=Msa0585880-mRNA-1;_AED=0.09;_eAED=0.11;_QI=0|0.62|0.55|0.88|0.75|0.77|9|174|722 |
| chr4_2 | exon | 6981648 | 6981883 | 6981648 | ID=Msa0585880-mRNA-1:exon:1753;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6982279 | 6982322 | 6982279 | ID=Msa0585880-mRNA-1:exon:1752;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6982426 | 6982599 | 6982426 | ID=Msa0585880-mRNA-1:exon:1751;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6982799 | 6982872 | 6982799 | ID=Msa0585880-mRNA-1:exon:1750;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6982986 | 6984359 | 6982986 | ID=Msa0585880-mRNA-1:exon:1749;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6984469 | 6984552 | 6984469 | ID=Msa0585880-mRNA-1:exon:1748;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6984715 | 6984897 | 6984715 | ID=Msa0585880-mRNA-1:exon:1747;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6984989 | 6985115 | 6984989 | ID=Msa0585880-mRNA-1:exon:1746;Parent=Msa0585880-mRNA-1 |
| chr4_2 | exon | 6986118 | 6986164 | 6986118 | ID=Msa0585880-mRNA-1:exon:1745;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6986118 | 6986164 | 6986118 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6984989 | 6985115 | 6984989 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6984715 | 6984897 | 6984715 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6984469 | 6984552 | 6984469 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6982986 | 6984359 | 6982986 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6982799 | 6982872 | 6982799 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6982426 | 6982599 | 6982426 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6982279 | 6982322 | 6982279 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | CDS | 6981822 | 6981883 | 6981822 | ID=Msa0585880-mRNA-1:cds;Parent=Msa0585880-mRNA-1 |
| chr4_2 | three_prime_UTR | 6981648 | 6981821 | 6981648 | ID=Msa0585880-mRNA-1:three_prime_utr;Parent=Msa0585880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
