Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529930 | XP_013454514.3 | 83.610 | 543 | 29 | 2 | 1 | 491 | 1 | 535 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529930 | sp|A8MRD9|PDS5D_ARATH | 50.198 | 253 | 126 | 0 | 27 | 279 | 26 | 278 | 2.00e-77 | 271 |
| Msa0529930 | sp|A8MRD9|PDS5D_ARATH | 42.105 | 76 | 44 | 0 | 750 | 825 | 542 | 617 | 2.57e-14 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529930 | A0A396HYD0 | 83.610 | 543 | 29 | 2 | 1 | 491 | 1 | 535 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0529930 | 0.844690 | 6.467626e-59 | -8.615850e-47 |
| Msa0028640 | Msa0529930 | 0.813372 | 2.646227e-51 | -8.615850e-47 |
| Msa0047050 | Msa0529930 | 0.802555 | 5.306667e-49 | -8.615850e-47 |
| Msa0084380 | Msa0529930 | 0.805139 | 1.542220e-49 | -8.615850e-47 |
| Msa0089630 | Msa0529930 | 0.802447 | 5.586355e-49 | -8.615850e-47 |
| Msa0094120 | Msa0529930 | 0.802369 | 5.797859e-49 | -8.615850e-47 |
| Msa0110970 | Msa0529930 | 0.829631 | 4.619446e-55 | -8.615850e-47 |
| Msa0140780 | Msa0529930 | 0.800182 | 1.624696e-48 | -8.615850e-47 |
| Msa0157290 | Msa0529930 | 0.844459 | 7.461385e-59 | -8.615850e-47 |
| Msa0191250 | Msa0529930 | 0.801323 | 9.503933e-49 | -8.615850e-47 |
| Msa0215320 | Msa0529930 | -0.809047 | 2.294815e-50 | -8.615850e-47 |
| Msa0220740 | Msa0529930 | 0.810481 | 1.128550e-50 | -8.615850e-47 |
| Msa0234600 | Msa0529930 | 0.815370 | 9.572175e-52 | -8.615850e-47 |
| Msa0393080 | Msa0529930 | 0.801791 | 7.619798e-49 | -8.615850e-47 |
| Msa0410650 | Msa0529930 | 0.831963 | 1.239068e-55 | -8.615850e-47 |
| Msa0417880 | Msa0529930 | 0.820862 | 5.480195e-53 | -8.615850e-47 |
| Msa0422850 | Msa0529930 | 0.815890 | 7.331103e-52 | -8.615850e-47 |
| Msa0422930 | Msa0529930 | 0.816131 | 6.476519e-52 | -8.615850e-47 |
| Msa0432770 | Msa0529930 | 0.809293 | 2.032609e-50 | -8.615850e-47 |
| Msa0440750 | Msa0529930 | 0.801754 | 7.757411e-49 | -8.615850e-47 |
| Msa0469160 | Msa0529930 | 0.808871 | 2.502532e-50 | -8.615850e-47 |
| Msa0480000 | Msa0529930 | 0.813235 | 2.836043e-51 | -8.615850e-47 |
| Msa0243100 | Msa0529930 | 0.817643 | 2.964298e-52 | -8.615850e-47 |
| Msa0261340 | Msa0529930 | 0.821931 | 3.105359e-53 | -8.615850e-47 |
| Msa0272690 | Msa0529930 | 0.824591 | 7.427645e-54 | -8.615850e-47 |
| Msa0283450 | Msa0529930 | 0.809590 | 1.755124e-50 | -8.615850e-47 |
| Msa0283520 | Msa0529930 | 0.804795 | 1.820012e-49 | -8.615850e-47 |
| Msa0287650 | Msa0529930 | 0.827950 | 1.178375e-54 | -8.615850e-47 |
| Msa0291540 | Msa0529930 | 0.803283 | 3.754333e-49 | -8.615850e-47 |
| Msa0302000 | Msa0529930 | 0.806208 | 9.194827e-50 | -8.615850e-47 |
| Msa0313410 | Msa0529930 | 0.807670 | 4.512804e-50 | -8.615850e-47 |
| Msa0332000 | Msa0529930 | 0.807924 | 3.985458e-50 | -8.615850e-47 |
| Msa0357340 | Msa0529930 | 0.804181 | 2.443297e-49 | -8.615850e-47 |
| Msa0488560 | Msa0529930 | 0.801071 | 1.070551e-48 | -8.615850e-47 |
| Msa0498060 | Msa0529930 | 0.806081 | 9.782478e-50 | -8.615850e-47 |
| Msa0507680 | Msa0529930 | 0.829162 | 6.006579e-55 | -8.615850e-47 |
| Msa0529890 | Msa0529930 | 0.801063 | 1.074373e-48 | -8.615850e-47 |
| Msa0529930 | Msa0574890 | 0.802815 | 4.689355e-49 | -8.615850e-47 |
| Msa0529930 | Msa0585300 | 0.840833 | 6.851298e-58 | -8.615850e-47 |
| Msa0529930 | Msa0585560 | 0.800255 | 1.570130e-48 | -8.615850e-47 |
| Msa0529930 | Msa0585880 | 0.800954 | 1.130758e-48 | -8.615850e-47 |
| Msa0529930 | Msa0602240 | 0.803564 | 3.282842e-49 | -8.615850e-47 |
| Msa0529930 | Msa0602250 | 0.812886 | 3.382253e-51 | -8.615850e-47 |
| Msa0529930 | Msa0625720 | 0.802756 | 4.824079e-49 | -8.615850e-47 |
| Msa0529930 | Msa0648880 | 0.819903 | 9.095417e-53 | -8.615850e-47 |
| Msa0529930 | Msa0657970 | 0.819248 | 1.283352e-52 | -8.615850e-47 |
| Msa0529930 | Msa0663380 | 0.811985 | 5.324288e-51 | -8.615850e-47 |
| Msa0529930 | Msa0669320 | 0.814522 | 1.476390e-51 | -8.615850e-47 |
| Msa0529930 | Msa0683510 | 0.804214 | 2.405358e-49 | -8.615850e-47 |
| Msa0529930 | Msa0691380 | 0.816182 | 6.310428e-52 | -8.615850e-47 |
| Msa0529930 | Msa0693380 | 0.810159 | 1.324196e-50 | -8.615850e-47 |
| Msa0529930 | Msa0708520 | 0.803213 | 3.879911e-49 | -8.615850e-47 |
| Msa0529930 | Msa0716840 | 0.801301 | 9.605858e-49 | -8.615850e-47 |
| Msa0529930 | Msa0731940 | 0.800625 | 1.320176e-48 | -8.615850e-47 |
| Msa0529930 | Msa0756630 | -0.804731 | 1.876236e-49 | -8.615850e-47 |
| Msa0529930 | Msa0764570 | 0.807924 | 3.985800e-50 | -8.615850e-47 |
| Msa0529930 | Msa0767300 | 0.801040 | 1.085926e-48 | -8.615850e-47 |
| Msa0529930 | Msa0828560 | 0.805297 | 1.429131e-49 | -8.615850e-47 |
| Msa0529930 | Msa0829620 | 0.800336 | 1.511612e-48 | -8.615850e-47 |
| Msa0529930 | Msa0844240 | 0.827917 | 1.200096e-54 | -8.615850e-47 |
| Msa0529930 | Msa0850960 | 0.812221 | 4.728573e-51 | -8.615850e-47 |
| Msa0529930 | Msa0867890 | 0.813267 | 2.790458e-51 | -8.615850e-47 |
| Msa0529930 | Msa0880140 | 0.842831 | 2.033008e-58 | -8.615850e-47 |
| Msa0529930 | Msa0947660 | 0.824435 | 8.083392e-54 | -8.615850e-47 |
| Msa0529930 | Msa0954130 | 0.807390 | 5.174668e-50 | -8.615850e-47 |
| Msa0529930 | Msa0954550 | 0.807667 | 4.519665e-50 | -8.615850e-47 |
| Msa0529930 | Msa0959360 | 0.818746 | 1.668883e-52 | -8.615850e-47 |
| Msa0529930 | Msa0969520 | 0.817556 | 3.101293e-52 | -8.615850e-47 |
| Msa0529930 | Msa1014540 | 0.811200 | 7.886448e-51 | -8.615850e-47 |
| Msa0529930 | Msa1029250 | 0.808962 | 2.393323e-50 | -8.615850e-47 |
| Msa0529930 | Msa1075220 | -0.818737 | 1.677146e-52 | -8.615850e-47 |
| Msa0529930 | Msa1082500 | 0.818449 | 1.948545e-52 | -8.615850e-47 |
| Msa0529930 | Msa1085200 | 0.834636 | 2.672121e-56 | -8.615850e-47 |
| Msa0529930 | Msa1108160 | 0.820169 | 7.904381e-53 | -8.615850e-47 |
| Msa0529930 | Msa1111110 | 0.821083 | 4.874674e-53 | -8.615850e-47 |
| Msa0529930 | Msa1113170 | 0.805578 | 1.247429e-49 | -8.615850e-47 |
| Msa0529930 | Msa1116130 | -0.816861 | 4.445968e-52 | -8.615850e-47 |
| Msa0529930 | Msa1151910 | 0.802309 | 5.964024e-49 | -8.615850e-47 |
| Msa0529930 | Msa1154710 | 0.825091 | 5.662175e-54 | -8.615850e-47 |
| Msa0529930 | Msa1162550 | -0.817609 | 3.017114e-52 | -8.615850e-47 |
| Msa0529930 | Msa1199220 | 0.800576 | 1.350545e-48 | -8.615850e-47 |
| Msa0529930 | Msa1209460 | 0.801550 | 8.539113e-49 | -8.615850e-47 |
| Msa0529930 | Msa1238930 | 0.800884 | 1.169005e-48 | -8.615850e-47 |
| Msa0529930 | Msa1242230 | 0.807818 | 4.197908e-50 | -8.615850e-47 |
| Msa0529930 | Msa1242240 | 0.829761 | 4.296700e-55 | -8.615850e-47 |
| Msa0529930 | Msa1264020 | 0.805862 | 1.087335e-49 | -8.615850e-47 |
| Msa0529930 | Msa1269230 | 0.808912 | 2.453227e-50 | -8.615850e-47 |
| Msa0529930 | Msa1271300 | 0.802608 | 5.175783e-49 | -8.615850e-47 |
| Msa0529930 | Msa1278840 | 0.807901 | 4.030403e-50 | -8.615850e-47 |
| Msa0529930 | Msa1283840 | 0.820774 | 5.743010e-53 | -8.615850e-47 |
| Msa0529930 | Msa1283860 | 0.814081 | 1.847707e-51 | -8.615850e-47 |
| Msa0529930 | Msa1284260 | 0.823259 | 1.525410e-53 | -8.615850e-47 |
| Msa0529930 | Msa1308380 | 0.820659 | 6.104076e-53 | -8.615850e-47 |
| Msa0529930 | Msa1322860 | 0.802012 | 6.866317e-49 | -8.615850e-47 |
| Msa0529930 | Msa1322890 | 0.803100 | 4.094912e-49 | -8.615850e-47 |
| Msa0529930 | Msa1327050 | 0.820392 | 7.028329e-53 | -8.615850e-47 |
| Msa0529930 | Msa1343070 | 0.823669 | 1.223052e-53 | -8.615850e-47 |
| Msa0529930 | Msa1371430 | 0.801875 | 7.323294e-49 | -8.615850e-47 |
| Msa0529930 | Msa1392260 | 0.803815 | 2.911559e-49 | -8.615850e-47 |
| Msa0529930 | Msa1409870 | 0.807955 | 3.924317e-50 | -8.615850e-47 |
| Msa0529930 | Msa1415640 | 0.828132 | 1.065719e-54 | -8.615850e-47 |
| Msa0529930 | Msa1429150 | 0.805644 | 1.208450e-49 | -8.615850e-47 |
| Msa0529930 | Msa1429900 | 0.804147 | 2.483759e-49 | -8.615850e-47 |
| Msa0529930 | Msa1459180 | 0.810114 | 1.353623e-50 | -8.615850e-47 |
| Msa0529930 | Msa1466540 | 0.801409 | 9.127099e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529930 | MtrunA17_Chr4g0001301 | 83.610 | 543 | 29 | 2 | 1 | 491 | 1 | 535 | 0.0 | 862 |
| Msa0529930 | MtrunA17_Chr1g0149971 | 48.361 | 244 | 126 | 0 | 27 | 270 | 24 | 267 | 1.32e-73 | 259 |
| Msa0529930 | MtrunA17_Chr1g0149971 | 50.000 | 90 | 35 | 3 | 736 | 825 | 635 | 714 | 7.78e-17 | 85.5 |
| Msa0529930 | MtrunA17_Chr3g0137011 | 44.141 | 256 | 142 | 1 | 6 | 261 | 4 | 258 | 3.35e-68 | 242 |
| Msa0529930 | MtrunA17_Chr3g0137011 | 33.333 | 141 | 69 | 4 | 708 | 825 | 452 | 590 | 4.24e-13 | 73.2 |
| Msa0529930 | MtrunA17_Chr4g0013631 | 70.588 | 136 | 34 | 1 | 1 | 130 | 1 | 136 | 4.78e-54 | 184 |
| Msa0529930 | MtrunA17_Chr4g0013641 | 53.889 | 180 | 80 | 2 | 298 | 477 | 33 | 209 | 2.89e-49 | 175 |
| Msa0529930 | MtrunA17_Chr4g0013641 | 56.667 | 60 | 26 | 0 | 649 | 708 | 198 | 257 | 4.25e-12 | 67.4 |
| Msa0529930 | MtrunA17_Chr4g0076411 | 38.683 | 243 | 145 | 1 | 11 | 249 | 14 | 256 | 2.36e-44 | 174 |
| Msa0529930 | MtrunA17_Chr4g0076411 | 43.529 | 85 | 38 | 3 | 736 | 819 | 1353 | 1428 | 9.09e-13 | 72.8 |
| Msa0529930 | MtrunA17_Chr2g0290621 | 36.546 | 249 | 150 | 3 | 14 | 255 | 9 | 256 | 7.58e-44 | 172 |
| Msa0529930 | MtrunA17_Chr2g0290621 | 42.727 | 110 | 51 | 3 | 711 | 819 | 1322 | 1420 | 2.09e-15 | 81.3 |
| Msa0529930 | MtrunA17_Chr1g0164141 | 32.127 | 221 | 138 | 2 | 17 | 226 | 12 | 231 | 7.73e-29 | 124 |
| Msa0529930 | MtrunA17_Chr2g0308141 | 89.189 | 37 | 4 | 0 | 1 | 37 | 1 | 37 | 1.15e-13 | 67.8 |
| Msa0529930 | MtrunA17_Chr7g0269931 | 50.980 | 51 | 25 | 0 | 766 | 816 | 90 | 140 | 4.15e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529930 | AT1G80810.5 | 50.198 | 253 | 126 | 0 | 27 | 279 | 26 | 278 | 2.91e-79 | 270 |
| Msa0529930 | AT1G80810.5 | 42.105 | 76 | 44 | 0 | 750 | 825 | 542 | 617 | 2.01e-15 | 81.3 |
| Msa0529930 | AT1G80810.3 | 50.198 | 253 | 126 | 0 | 27 | 279 | 26 | 278 | 2.03e-78 | 271 |
| Msa0529930 | AT1G80810.3 | 42.105 | 76 | 44 | 0 | 750 | 825 | 542 | 617 | 2.61e-15 | 80.9 |
| Msa0529930 | AT1G15940.1 | 39.130 | 391 | 182 | 6 | 28 | 412 | 29 | 369 | 2.63e-74 | 262 |
| Msa0529930 | AT1G15940.1 | 43.023 | 86 | 42 | 2 | 761 | 846 | 566 | 644 | 1.92e-14 | 78.2 |
| Msa0529930 | AT4G31880.1 | 49.600 | 250 | 124 | 2 | 27 | 276 | 24 | 271 | 3.06e-73 | 258 |
| Msa0529930 | AT4G31880.1 | 58.491 | 53 | 22 | 0 | 763 | 815 | 605 | 657 | 1.03e-15 | 82.4 |
| Msa0529930 | AT4G31880.2 | 49.600 | 250 | 124 | 2 | 27 | 276 | 24 | 271 | 3.13e-73 | 258 |
| Msa0529930 | AT4G31880.2 | 58.491 | 53 | 22 | 0 | 763 | 815 | 604 | 656 | 1.05e-15 | 82.4 |
| Msa0529930 | AT1G80810.1 | 50.000 | 226 | 113 | 0 | 54 | 279 | 1 | 226 | 1.40e-71 | 251 |
| Msa0529930 | AT1G80810.1 | 46.875 | 64 | 34 | 0 | 762 | 825 | 501 | 564 | 1.59e-14 | 78.6 |
| Msa0529930 | AT1G80810.4 | 50.000 | 226 | 113 | 0 | 54 | 279 | 1 | 226 | 1.41e-71 | 251 |
| Msa0529930 | AT1G80810.4 | 42.105 | 76 | 44 | 0 | 750 | 825 | 490 | 565 | 2.71e-15 | 80.9 |
| Msa0529930 | AT1G80810.2 | 50.000 | 226 | 113 | 0 | 54 | 279 | 1 | 226 | 1.41e-71 | 251 |
| Msa0529930 | AT1G80810.2 | 42.105 | 76 | 44 | 0 | 750 | 825 | 490 | 565 | 2.71e-15 | 80.9 |
| Msa0529930 | AT5G47690.1 | 40.598 | 234 | 132 | 3 | 14 | 242 | 9 | 240 | 1.46e-37 | 153 |
| Msa0529930 | AT5G47690.1 | 41.905 | 105 | 57 | 2 | 718 | 821 | 1321 | 1422 | 8.94e-17 | 86.3 |
| Msa0529930 | AT5G47690.2 | 40.598 | 234 | 132 | 3 | 14 | 242 | 9 | 240 | 1.46e-37 | 153 |
| Msa0529930 | AT5G47690.2 | 39.623 | 106 | 61 | 1 | 716 | 821 | 1321 | 1423 | 2.56e-17 | 87.8 |
| Msa0529930 | AT5G47690.3 | 40.598 | 234 | 132 | 3 | 14 | 242 | 9 | 240 | 1.53e-37 | 153 |
| Msa0529930 | AT5G47690.3 | 39.623 | 106 | 61 | 1 | 716 | 821 | 1321 | 1423 | 2.54e-17 | 87.8 |
| Msa0529930 | AT1G77600.1 | 31.156 | 199 | 113 | 3 | 63 | 239 | 65 | 261 | 2.78e-22 | 103 |
| Msa0529930 | AT1G77600.2 | 31.156 | 199 | 113 | 3 | 63 | 239 | 65 | 261 | 2.83e-22 | 103 |
| Msa0529930 | AT1G77600.3 | 31.156 | 199 | 113 | 3 | 63 | 239 | 65 | 261 | 3.90e-22 | 103 |
| Msa0529930 | AT5G47690.4 | 37.762 | 143 | 85 | 1 | 104 | 242 | 1 | 143 | 1.79e-18 | 91.7 |
| Msa0529930 | AT5G47690.4 | 39.623 | 106 | 61 | 1 | 716 | 821 | 1224 | 1326 | 3.41e-17 | 87.4 |
| Msa0529930 | AT5G10950.1 | 50.000 | 56 | 28 | 0 | 762 | 817 | 33 | 88 | 3.59e-14 | 75.9 |
Find 161 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTGCGTCTTATCCTTTC+TGG | 0.144733 | 4_1:-3810752 | None:intergenic |
| ACTTTGTCTCATCCATAATT+TGG | 0.161292 | 4_1:-3810135 | None:intergenic |
| TTCAATATTGACGCAGAATT+AGG | 0.164323 | 4_1:-3811087 | None:intergenic |
| CTTTCTTACACTATCTAATA+AGG | 0.186482 | 4_1:-3809430 | None:intergenic |
| GAGGAATGTGTCAAACTTTA+TGG | 0.198692 | 4_1:+3812662 | Msa0529930:three_prime_UTR |
| GGAGCTTCACCGACAGTTTC+AGG | 0.207919 | 4_1:-3810778 | None:intergenic |
| AGAGCTTCACCGACAGTTTC+AGG | 0.220476 | 4_1:-3810529 | None:intergenic |
| TCACCTATGTCTTGGACTTT+GGG | 0.223912 | 4_1:+3809559 | Msa0529930:CDS |
| GTCTTATCCTTTCTGTTAGA+AGG | 0.231603 | 4_1:-3810496 | None:intergenic |
| GTAACTCATTGGTTGGTAAA+AGG | 0.238223 | 4_1:+3811600 | Msa0529930:CDS |
| CGTCTTTCGAGGTTTGTAAT+TGG | 0.251745 | 4_1:-3810241 | None:intergenic |
| TTCACCTATGTCTTGGACTT+TGG | 0.253766 | 4_1:+3809558 | Msa0529930:CDS |
| TGAATCAGTCTTCATTCTTT+TGG | 0.266888 | 4_1:-3812613 | None:intergenic |
| CACAGTATCCAGCTGAGTTT+TGG | 0.285566 | 4_1:-3810320 | None:intergenic |
| TTTACTTCACAGGGTTCTTC+AGG | 0.289524 | 4_1:-3809940 | None:intergenic |
| GCCTTCCTCGGGATTCATTA+AGG | 0.291880 | 4_1:-3810371 | None:intergenic |
| GATTCCAAAACTAAAGCTTC+TGG | 0.293914 | 4_1:-3810946 | None:intergenic |
| GTGAAGAGTCTTAAACATTT+GGG | 0.306836 | 4_1:+3807121 | Msa0529930:CDS |
| TACATAATGTGCATATATAT+TGG | 0.313306 | 4_1:+3812712 | Msa0529930:three_prime_UTR |
| GGTTCTTCAGGAGCATCTTT+AGG | 0.320848 | 4_1:-3809928 | None:intergenic |
| AGTGAAGAGTCTTAAACATT+TGG | 0.321679 | 4_1:+3807120 | Msa0529930:CDS |
| ATCATCTCAATCCAACAAAA+AGG | 0.324746 | 4_1:+3810435 | Msa0529930:CDS |
| ATCATCTCAATCCAACAAAA+AGG | 0.324746 | 4_1:+3810684 | Msa0529930:CDS |
| AACTCCAGAAGCTTTAGTTT+TGG | 0.327152 | 4_1:+3810942 | Msa0529930:CDS |
| AAATTATGTATAAAGTTTGA+TGG | 0.340639 | 4_1:+3811237 | Msa0529930:CDS |
| TCAATATTGACGCAGAATTA+GGG | 0.345215 | 4_1:-3811086 | None:intergenic |
| GATTCTTACATCTTGTCTAA+TGG | 0.348280 | 4_1:-3811638 | None:intergenic |
| TCATCATCATAAGGATCATT+TGG | 0.350083 | 4_1:-3808180 | None:intergenic |
| AGCACAAGTGATTCTTGAAT+TGG | 0.356473 | 4_1:-3808054 | None:intergenic |
| AAAACTTCTACTTCTGATAA+AGG | 0.360560 | 4_1:+3811417 | Msa0529930:CDS |
| TCGGGATTCATTAAGGAGTT+AGG | 0.360851 | 4_1:-3810364 | None:intergenic |
| TGATTTGGTTGATGATTTCA+TGG | 0.364782 | 4_1:+3812573 | Msa0529930:CDS |
| TGAATGATATCCTTTGTAAA+GGG | 0.372819 | 4_1:-3810997 | None:intergenic |
| GAAAACTTGTCTCATGCATC+TGG | 0.374684 | 4_1:+3808367 | Msa0529930:CDS |
| GGCTTACGTGCCCTCTTCCT+TGG | 0.376832 | 4_1:-3810343 | None:intergenic |
| CTCACACCTTCAGGATTTGA+CGG | 0.385126 | 4_1:-3810916 | None:intergenic |
| TTTAAGTTTGACAGCACAAT+TGG | 0.385577 | 4_1:-3809596 | None:intergenic |
| TGTGAGAGATGTCCAAATTA+TGG | 0.390475 | 4_1:+3810123 | Msa0529930:CDS |
| ATTGATTCAATGACATTACT+TGG | 0.395549 | 4_1:-3809345 | None:intergenic |
| TCTTAAAATCAGGTGACTAC+AGG | 0.398236 | 4_1:+3810079 | Msa0529930:intron |
| TTTCTTACACTATCTAATAA+GGG | 0.399284 | 4_1:-3809429 | None:intergenic |
| TATGGTACTTTCTGTTAGAA+TGG | 0.400005 | 4_1:+3812680 | Msa0529930:three_prime_UTR |
| CTAATACCCTTGGTAGAATC+AGG | 0.409315 | 4_1:-3810643 | None:intergenic |
| GAAGGAAAGTTAGTAGCATT+GGG | 0.412857 | 4_1:+3811049 | Msa0529930:CDS |
| CTAATACCCTTGGTAGAATC+AGG | 0.413012 | 4_1:-3810892 | None:intergenic |
| GTCTTATCCTTTCTGGAAGA+AGG | 0.416398 | 4_1:-3810745 | None:intergenic |
| GCCACTGAATCATGACGTTC+TGG | 0.419168 | 4_1:-3809712 | None:intergenic |
| GGAGCTGTTATTGTTAAACT+TGG | 0.423021 | 4_1:+3808014 | Msa0529930:CDS |
| TGTTAATGTTTCACCAGATA+AGG | 0.428963 | 4_1:+3811970 | Msa0529930:CDS |
| AACAGTTCTTGAGAATCATA+AGG | 0.434790 | 4_1:+3808497 | Msa0529930:CDS |
| TCTCTATTAAGTCTTCAAAC+AGG | 0.437119 | 4_1:-3812759 | None:intergenic |
| ATGAATGATATCCTTTGTAA+AGG | 0.439211 | 4_1:-3810998 | None:intergenic |
| ATGTTGTTGCAGATCTGATT+TGG | 0.440413 | 4_1:+3812558 | Msa0529930:intron |
| CGAAGGAAAGTTAGTAGCAT+TGG | 0.440766 | 4_1:+3811048 | Msa0529930:CDS |
| GGTGACTACAGGGGTTGAAA+TGG | 0.443587 | 4_1:+3810090 | Msa0529930:intron |
| TCTGTTGAATCCCATGGTGC+TGG | 0.448568 | 4_1:+3811144 | Msa0529930:CDS |
| CACCTATGTCTTGGACTTTG+GGG | 0.449353 | 4_1:+3809560 | Msa0529930:CDS |
| ACAAAGATAATTTACTTCAC+AGG | 0.451346 | 4_1:-3809950 | None:intergenic |
| TCAGAAATAAGTGTCTTCAT+TGG | 0.451815 | 4_1:-3808078 | None:intergenic |
| TCAACTGCTTTCATGAGATA+AGG | 0.452458 | 4_1:-3809619 | None:intergenic |
| AAGTAATGTCATTGAATCAA+TGG | 0.458006 | 4_1:+3809347 | Msa0529930:CDS |
| CTCAAATAGAAGTCGACAAA+AGG | 0.458161 | 4_1:+3811388 | Msa0529930:CDS |
| TGAAGACCTTGGTAACTCAT+TGG | 0.459413 | 4_1:+3811589 | Msa0529930:CDS |
| ATCCAAAAGCTTACTGAGAA+AGG | 0.460812 | 4_1:-3809973 | None:intergenic |
| AAAATAATAAATCTAAAGTA+AGG | 0.464205 | 4_1:+3811172 | Msa0529930:CDS |
| TCTTATCCTTTCTGTTAGAA+GGG | 0.471749 | 4_1:-3810495 | None:intergenic |
| CAAAATATTCTTGATCATGC+TGG | 0.472047 | 4_1:+3808438 | Msa0529930:CDS |
| AAAAGTAGTTAGGTCTATAG+AGG | 0.474198 | 4_1:+3812643 | Msa0529930:three_prime_UTR |
| CTTAAAATCAGGTGACTACA+GGG | 0.476509 | 4_1:+3810080 | Msa0529930:intron |
| AGATGATTTCACCTATGTCT+TGG | 0.477127 | 4_1:+3809551 | Msa0529930:intron |
| TTCACTTTCGTCGAGTATCC+CGG | 0.482396 | 4_1:-3809382 | None:intergenic |
| ACCTTAGCAACTATTGATTG+AGG | 0.489861 | 4_1:-3811276 | None:intergenic |
| CTTATTAGATAGTGTAAGAA+AGG | 0.491206 | 4_1:+3809431 | Msa0529930:CDS |
| AAATCTCAAGAATGAGCAAT+GGG | 0.493675 | 4_1:+3811937 | Msa0529930:CDS |
| CTGGAGATTCAGATTTATTG+TGG | 0.499658 | 4_1:-3809693 | None:intergenic |
| ATTCAATGACATTACTTGGA+TGG | 0.502945 | 4_1:-3809341 | None:intergenic |
| TCCTCAATCAATAGTTGCTA+AGG | 0.509624 | 4_1:+3811275 | Msa0529930:CDS |
| CAACAAATCATCTACTAAGA+AGG | 0.514239 | 4_1:+3811443 | Msa0529930:CDS |
| CTGTTAGAAGGGTTATCAGA+TGG | 0.516944 | 4_1:-3810484 | None:intergenic |
| AAGGTAGAAAATAGAGCAGA+GGG | 0.517522 | 4_1:+3811354 | Msa0529930:CDS |
| AGTGATTCTTGAATTGGCTC+AGG | 0.518183 | 4_1:-3808048 | None:intergenic |
| GTCGACTTCTATTTGAGCTG+AGG | 0.518676 | 4_1:-3811382 | None:intergenic |
| TGGATACTGTGCCAAGGAAG+AGG | 0.520681 | 4_1:+3810332 | Msa0529930:CDS |
| CAAAGATAATTTACTTCACA+GGG | 0.522829 | 4_1:-3809949 | None:intergenic |
| GGACCTTGAGTGTGATGACC+TGG | 0.525642 | 4_1:+3808459 | Msa0529930:CDS |
| ACAGAAGTCTTCTTATGTGA+AGG | 0.526563 | 4_1:-3811126 | None:intergenic |
| ACAAAGGATATCATTCATGA+AGG | 0.527116 | 4_1:+3811003 | Msa0529930:CDS |
| ATTTGACGGTCTAATACCCT+TGG | 0.527702 | 4_1:-3810902 | None:intergenic |
| ACTGAACTCCAAAACTCAGC+TGG | 0.528121 | 4_1:+3810312 | Msa0529930:CDS |
| TAATAAATCTAAAGTAAGGA+AGG | 0.530300 | 4_1:+3811176 | Msa0529930:CDS |
| GAATATCAACAGAAGAAGCT+AGG | 0.531018 | 4_1:-3807162 | None:intergenic |
| ATATTTCCTCGGATCTACTT+AGG | 0.532005 | 4_1:+3809406 | Msa0529930:CDS |
| GAGTGATTATAGCCTTCCTC+GGG | 0.533009 | 4_1:-3810382 | None:intergenic |
| ATGAAAGCAGTTGAATCCTC+AGG | 0.533089 | 4_1:+3809628 | Msa0529930:CDS |
| TGGCAATTTAGAGTCAGATC+AGG | 0.535035 | 4_1:+3810288 | Msa0529930:CDS |
| GACCTTGGTAACTCATTGGT+TGG | 0.537219 | 4_1:+3811593 | Msa0529930:CDS |
| TCTTATCCTTTCTGGAAGAA+GGG | 0.540051 | 4_1:-3810744 | None:intergenic |
| TTGGTAAAAGGATCAAGGTC+TGG | 0.544226 | 4_1:+3811612 | Msa0529930:CDS |
| ATCGTCGACTGTAGCTGCAT+TGG | 0.545020 | 4_1:-3810173 | None:intergenic |
| CAAGTCGAGTACAAATACTA+AGG | 0.545604 | 4_1:+3811335 | Msa0529930:CDS |
| TGCTACTAACTTTCCTTCGC+CGG | 0.549337 | 4_1:-3811044 | None:intergenic |
| ACCTATGTCTTGGACTTTGG+GGG | 0.551376 | 4_1:+3809561 | Msa0529930:CDS |
| GATTCTTGAATTGGCTCAGG+TGG | 0.552702 | 4_1:-3808045 | None:intergenic |
| CTGGAAGAAGGGTTATCAGA+TGG | 0.553404 | 4_1:-3810733 | None:intergenic |
| AGGTTTGTAATTGGACAAGA+AGG | 0.553710 | 4_1:-3810232 | None:intergenic |
| CTGTTGAATCCCATGGTGCT+GGG | 0.554351 | 4_1:+3811145 | Msa0529930:CDS |
| CAGAGCTCTCAATGAGTATG+TGG | 0.556970 | 4_1:+3809651 | Msa0529930:CDS |
| TGATAACCCTTCTAACAGAA+AGG | 0.558007 | 4_1:+3810489 | Msa0529930:CDS |
| ATTGGTTGGTAAAAGGATCA+AGG | 0.559916 | 4_1:+3811607 | Msa0529930:CDS |
| TCAATGGAGATAGTAATGAC+CGG | 0.560099 | 4_1:+3809363 | Msa0529930:CDS |
| AGAGTGATTATAGCCTTCCT+CGG | 0.561513 | 4_1:-3810383 | None:intergenic |
| TGATAACCCTTCTTCCAGAA+AGG | 0.562342 | 4_1:+3810738 | Msa0529930:CDS |
| GAAAGTCCTGATTCTACCAA+GGG | 0.568571 | 4_1:+3810637 | Msa0529930:CDS |
| TCAATCAATAGTTGCTAAGG+TGG | 0.574486 | 4_1:+3811278 | Msa0529930:CDS |
| ACTTGACTGTCTAATACCCT+TGG | 0.575744 | 4_1:-3810653 | None:intergenic |
| CAATGGAGATAGTAATGACC+GGG | 0.579241 | 4_1:+3809364 | Msa0529930:CDS |
| AAGACTTCTGTTGAATCCCA+TGG | 0.580295 | 4_1:+3811138 | Msa0529930:CDS |
| CTACTAAACGACGCCGGCGA+AGG | 0.581440 | 4_1:+3811031 | Msa0529930:CDS |
| TAGTGTAAGAAAGGAGAACC+AGG | 0.582669 | 4_1:+3809440 | Msa0529930:CDS |
| AGTTGCTAAGGTGGAATCTG+AGG | 0.584626 | 4_1:+3811287 | Msa0529930:CDS |
| GGATACTGTGCCAAGGAAGA+GGG | 0.587491 | 4_1:+3810333 | Msa0529930:CDS |
| AAAAGATGTTCCCTTTACAA+AGG | 0.587511 | 4_1:+3810987 | Msa0529930:CDS |
| TAAATCTCAAGAATGAGCAA+TGG | 0.589764 | 4_1:+3811936 | Msa0529930:CDS |
| GAGAAACATGAGGCACCCGT+TGG | 0.591397 | 4_1:+3811207 | Msa0529930:CDS |
| GAAAGTCCTGATTCTACCAA+GGG | 0.595423 | 4_1:+3810886 | Msa0529930:CDS |
| CAATTACAAACCTCGAAAGA+CGG | 0.596262 | 4_1:+3810242 | Msa0529930:CDS |
| TCCTTAATGAATCCCGAGGA+AGG | 0.597597 | 4_1:+3810370 | Msa0529930:CDS |
| TACCAACCAATGAGTTACCA+AGG | 0.601777 | 4_1:-3811595 | None:intergenic |
| GAATCAGGACTTTCAATGCA+CGG | 0.606289 | 4_1:-3810877 | None:intergenic |
| CGAAAGTGAAGATATTTCCT+CGG | 0.607128 | 4_1:+3809395 | Msa0529930:CDS |
| TAAGGTAGAAAATAGAGCAG+AGG | 0.608082 | 4_1:+3811353 | Msa0529930:CDS |
| AATGCTTATGATCATGTCAA+CGG | 0.608579 | 4_1:+3811872 | Msa0529930:CDS |
| GTTGTACGACGACGATGTTG+AGG | 0.620195 | 4_1:+3811907 | Msa0529930:CDS |
| CTCAGCTGGATACTGTGCCA+AGG | 0.623764 | 4_1:+3810326 | Msa0529930:CDS |
| TGAAGAGTCTTAAACATTTG+GGG | 0.625351 | 4_1:+3807122 | Msa0529930:CDS |
| TGAAAGTCCTGATTCTACCA+AGG | 0.627911 | 4_1:+3810636 | Msa0529930:CDS |
| TGAAAGTCCTGATTCTACCA+AGG | 0.627911 | 4_1:+3810885 | Msa0529930:CDS |
| GCACATGAACATGAAGACCT+TGG | 0.628436 | 4_1:+3811578 | Msa0529930:CDS |
| TCATGTCAACGGAAAGCACA+AGG | 0.629953 | 4_1:+3811883 | Msa0529930:CDS |
| TCCAGAACGTCATGATTCAG+TGG | 0.630622 | 4_1:+3809711 | Msa0529930:CDS |
| CTCATTGAGAGCTCTGCCTG+AGG | 0.637114 | 4_1:-3809644 | None:intergenic |
| AATTATGGATGAGACAAAGT+CGG | 0.639921 | 4_1:+3810138 | Msa0529930:CDS |
| GAATCAGGACTTTCAATACA+CGG | 0.640219 | 4_1:-3810628 | None:intergenic |
| AAAGTTTGATGGAAAAGTTG+TGG | 0.647463 | 4_1:+3811248 | Msa0529930:CDS |
| TTAGCAACTATTGATTGAGG+AGG | 0.647638 | 4_1:-3811273 | None:intergenic |
| CAGTCAAAGCCTGAAACTGT+CGG | 0.651899 | 4_1:+3810769 | Msa0529930:CDS |
| GTAAAAGGATCAAGGTCTGG+TGG | 0.652291 | 4_1:+3811615 | Msa0529930:CDS |
| TAAGGGCCTAAGTAGATCCG+AGG | 0.654700 | 4_1:-3809412 | None:intergenic |
| ATTAGACCGTCAAATCCTGA+AGG | 0.657251 | 4_1:+3810910 | Msa0529930:CDS |
| GGATTCTGAAGAGAAACATG+AGG | 0.659071 | 4_1:+3811197 | Msa0529930:CDS |
| CAGTCAAAGCCTGAAACTGT+CGG | 0.664317 | 4_1:+3810520 | Msa0529930:CDS |
| CAACCAGGTCATCACACTCA+AGG | 0.666022 | 4_1:-3808462 | None:intergenic |
| TTAAAATCAGGTGACTACAG+GGG | 0.677994 | 4_1:+3810081 | Msa0529930:intron |
| GTAGAAAATAGAGCAGAGGG+AGG | 0.685228 | 4_1:+3811357 | Msa0529930:CDS |
| GAACATGTGAATGTTAACGT+AGG | 0.689287 | 4_1:+3812734 | Msa0529930:three_prime_UTR |
| AAGGAAAGTTAGTAGCATTG+GGG | 0.690442 | 4_1:+3811050 | Msa0529930:CDS |
| TAACTCCTTAATGAATCCCG+AGG | 0.696649 | 4_1:+3810366 | Msa0529930:CDS |
| TGATTCTTGCAATCTCAGTG+AGG | 0.707045 | 4_1:-3808152 | None:intergenic |
| GTTGAAACATCTCAACAACC+AGG | 0.707803 | 4_1:-3808477 | None:intergenic |
| AGAACGTCATGATTCAGTGG+CGG | 0.724032 | 4_1:+3809714 | Msa0529930:CDS |
| GAAGCTCTACTAAACGACGC+CGG | 0.767843 | 4_1:+3811025 | Msa0529930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTGTTATTTGTTATT+TGG | + | chr4_1:3809481-3809500 | Msa0529930:intron | 10.0% |
| !!! | AAAATAATAAATCTAAAGTA+AGG | + | chr4_1:3811172-3811191 | Msa0529930:CDS | 10.0% |
| !! | TCAATAGATACATTAAAAAA+TGG | - | chr4_1:3807229-3807248 | None:intergenic | 15.0% |
| !! | TAAACTAAATATAAATCCTT+AGG | - | chr4_1:3807872-3807891 | None:intergenic | 15.0% |
| !!! | AAGAATTTGAAATTAATGTA+AGG | + | chr4_1:3809851-3809870 | Msa0529930:intron | 15.0% |
| !! | AAATTATGTATAAAGTTTGA+TGG | + | chr4_1:3811237-3811256 | Msa0529930:CDS | 15.0% |
| !!! | AAAAATCTTTACTTTTCTTT+AGG | + | chr4_1:3811556-3811575 | Msa0529930:intron | 15.0% |
| !! | TTCCATTATTATATAATTTG+TGG | + | chr4_1:3812483-3812502 | Msa0529930:intron | 15.0% |
| !! | ATCCACAAATTATATAATAA+TGG | - | chr4_1:3812488-3812507 | None:intergenic | 15.0% |
| !! | TACATTAAAAAATGGAAGAA+AGG | - | chr4_1:3807221-3807240 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAATTATTAC+CGG | + | chr4_1:3807552-3807571 | Msa0529930:intron | 20.0% |
| !! | GATATTTGATGTTTCAAATT+AGG | + | chr4_1:3807920-3807939 | Msa0529930:intron | 20.0% |
| !!! | TGATTTTCACTTTTAGAAAA+TGG | + | chr4_1:3807993-3808012 | Msa0529930:intron | 20.0% |
| !!! | TTCATTTTTTCATCATCATA+AGG | - | chr4_1:3808192-3808211 | None:intergenic | 20.0% |
| !!! | TTATGATGATGAAAAAATGA+AGG | + | chr4_1:3808191-3808210 | Msa0529930:CDS | 20.0% |
| !! | TTTATACTCATCATCTATTA+TGG | - | chr4_1:3808253-3808272 | None:intergenic | 20.0% |
| !!! | CTTTGAAATTTTTTCAAGTA+TGG | - | chr4_1:3808416-3808435 | None:intergenic | 20.0% |
| !!! | AAAAAGTATTTTGAGAATGA+TGG | - | chr4_1:3808573-3808592 | None:intergenic | 20.0% |
| !!! | AATACTTTTTATGTTACTTC+CGG | + | chr4_1:3808583-3808602 | Msa0529930:intron | 20.0% |
| !!! | TATATTGCTAAAAAGTTGAT+TGG | + | chr4_1:3809248-3809267 | Msa0529930:intron | 20.0% |
| !! | TTTCTTACACTATCTAATAA+GGG | - | chr4_1:3809432-3809451 | None:intergenic | 20.0% |
| !! | GATTGACAAAGTAAAATAAA+AGG | - | chr4_1:3809510-3809529 | None:intergenic | 20.0% |
| !!! | TTTTACTTTGTCAATCTTAT+TGG | + | chr4_1:3809514-3809533 | Msa0529930:intron | 20.0% |
| !! | TCTTCATTATTCTTAAAATC+AGG | + | chr4_1:3810069-3810088 | Msa0529930:intron | 20.0% |
| !!! | ACTTTTATCACAGTTTTTTT+TGG | - | chr4_1:3810599-3810618 | None:intergenic | 20.0% |
| !!! | TAATAAATCTAAAGTAAGGA+AGG | + | chr4_1:3811176-3811195 | Msa0529930:CDS | 20.0% |
| !!! | ACATAATTTGATTTTTCCAA+CGG | - | chr4_1:3811226-3811245 | None:intergenic | 20.0% |
| !! | TACATAATGTGCATATATAT+TGG | + | chr4_1:3812712-3812731 | Msa0529930:three_prime_UTR | 20.0% |
| ! | GTTCAATTACAATGGAATTT+AGG | - | chr4_1:3807282-3807301 | None:intergenic | 25.0% |
| ! | TTAATTAGATGCAAACCTTA+TGG | + | chr4_1:3807430-3807449 | Msa0529930:intron | 25.0% |
| ! | TTGTGAAAGTCTTTGTATAA+GGG | - | chr4_1:3808529-3808548 | None:intergenic | 25.0% |
| ! | TTTGTGAAAGTCTTTGTATA+AGG | - | chr4_1:3808530-3808549 | None:intergenic | 25.0% |
| ! | TGTCGTGTAATAATTATTAC+AGG | - | chr4_1:3808670-3808689 | None:intergenic | 25.0% |
| ! | TAATAATTATTACACGACAC+TGG | + | chr4_1:3808671-3808690 | Msa0529930:intron | 25.0% |
| ! | TAAAAACAATGCAAAACCAA+AGG | - | chr4_1:3808799-3808818 | None:intergenic | 25.0% |
| ! | ATTTATCTAACAGTAGCTTA+AGG | - | chr4_1:3809135-3809154 | None:intergenic | 25.0% |
| !!! | TTTTTAGCAATATAAGCAAG+GGG | - | chr4_1:3809242-3809261 | None:intergenic | 25.0% |
| !!! | CTTTTTAGCAATATAAGCAA+GGG | - | chr4_1:3809243-3809262 | None:intergenic | 25.0% |
| !!! | ACTTTTTAGCAATATAAGCA+AGG | - | chr4_1:3809244-3809263 | None:intergenic | 25.0% |
| !! | ATTGATTCAATGACATTACT+TGG | - | chr4_1:3809348-3809367 | None:intergenic | 25.0% |
| ! | AAGTAATGTCATTGAATCAA+TGG | + | chr4_1:3809347-3809366 | Msa0529930:CDS | 25.0% |
| ! | CTTTCTTACACTATCTAATA+AGG | - | chr4_1:3809433-3809452 | None:intergenic | 25.0% |
| ! | CTTATTAGATAGTGTAAGAA+AGG | + | chr4_1:3809431-3809450 | Msa0529930:CDS | 25.0% |
| !! | CTTCAAAAGAATTAGTTTGA+AGG | - | chr4_1:3809800-3809819 | None:intergenic | 25.0% |
| ! | CAAAGATAATTTACTTCACA+GGG | - | chr4_1:3809952-3809971 | None:intergenic | 25.0% |
| ! | ACAAAGATAATTTACTTCAC+AGG | - | chr4_1:3809953-3809972 | None:intergenic | 25.0% |
| !! | CAAAAAGTTCTGATTCAAAA+AGG | + | chr4_1:3810203-3810222 | Msa0529930:CDS | 25.0% |
| ! | TAGTTTCTGACCTTAAAAAT+GGG | + | chr4_1:3810551-3810570 | Msa0529930:CDS | 25.0% |
| !!! | ACATTTTTAAGATCAGAAAC+TGG | - | chr4_1:3810802-3810821 | None:intergenic | 25.0% |
| !!! | CAGTTTTTTTTGAATTTAGC+AGG | - | chr4_1:3810838-3810857 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGGAATCTAAACA+AGG | + | chr4_1:3810955-3810974 | Msa0529930:CDS | 25.0% |
| ! | TGAATGATATCCTTTGTAAA+GGG | - | chr4_1:3811000-3811019 | None:intergenic | 25.0% |
| ! | ATGAATGATATCCTTTGTAA+AGG | - | chr4_1:3811001-3811020 | None:intergenic | 25.0% |
| !!! | CATAATTTGATTTTTCCAAC+GGG | - | chr4_1:3811225-3811244 | None:intergenic | 25.0% |
| ! | AAAACTTCTACTTCTGATAA+AGG | + | chr4_1:3811417-3811436 | Msa0529930:CDS | 25.0% |
| ! | ATAACGAAGAATAATGATGA+TGG | - | chr4_1:3811522-3811541 | None:intergenic | 25.0% |
| !!! | AAGTAATCTTACTTTGAAAC+TGG | - | chr4_1:3811715-3811734 | None:intergenic | 25.0% |
| ! | GTTTCAAAGTAAGATTACTT+TGG | + | chr4_1:3811715-3811734 | Msa0529930:intron | 25.0% |
| ! | ATTTGAGAAAATGTAAGTGT+CGG | + | chr4_1:3812267-3812286 | Msa0529930:intron | 25.0% |
| ! | AAGTAAACCTGCTATATTAT+GGG | - | chr4_1:3812404-3812423 | None:intergenic | 25.0% |
| ! | AAAGTAAACCTGCTATATTA+TGG | - | chr4_1:3812405-3812424 | None:intergenic | 25.0% |
| AGTGAAGAGTCTTAAACATT+TGG | + | chr4_1:3807120-3807139 | Msa0529930:CDS | 30.0% | |
| GTGAAGAGTCTTAAACATTT+GGG | + | chr4_1:3807121-3807140 | Msa0529930:CDS | 30.0% | |
| TGAAGAGTCTTAAACATTTG+GGG | + | chr4_1:3807122-3807141 | Msa0529930:CDS | 30.0% | |
| TTCCATTGTAATTGAACTTC+TGG | + | chr4_1:3807285-3807304 | Msa0529930:intron | 30.0% | |
| TTCAATTGTATCTTCTGATC+AGG | + | chr4_1:3807358-3807377 | Msa0529930:intron | 30.0% | |
| !! | GTGTCAATTTTTGTTTCCTA+AGG | + | chr4_1:3807853-3807872 | Msa0529930:intron | 30.0% |
| TTAGGCATAGCAATGTAATT+AGG | + | chr4_1:3807938-3807957 | Msa0529930:intron | 30.0% | |
| !!! | TGACTTTTTTACCTTCTGTT+TGG | + | chr4_1:3807970-3807989 | Msa0529930:intron | 30.0% |
| TCAGAAATAAGTGTCTTCAT+TGG | - | chr4_1:3808081-3808100 | None:intergenic | 30.0% | |
| TCATCATCATAAGGATCATT+TGG | - | chr4_1:3808183-3808202 | None:intergenic | 30.0% | |
| AAATTCCTGTTAACAGTGAA+CGG | - | chr4_1:3808323-3808342 | None:intergenic | 30.0% | |
| !!! | GGAATTTTTTAAGCTTACAG+TGG | + | chr4_1:3808336-3808355 | Msa0529930:intron | 30.0% |
| CAAAATATTCTTGATCATGC+TGG | + | chr4_1:3808438-3808457 | Msa0529930:CDS | 30.0% | |
| AACAGTTCTTGAGAATCATA+AGG | + | chr4_1:3808497-3808516 | Msa0529930:CDS | 30.0% | |
| ACAAAGACTTTCACAAATAC+TGG | + | chr4_1:3808533-3808552 | Msa0529930:intron | 30.0% | |
| GTTATGTAATCGATAATCGA+AGG | + | chr4_1:3808903-3808922 | Msa0529930:intron | 30.0% | |
| AAAACTTTGTTGAGTCCTTA+GGG | + | chr4_1:3808926-3808945 | Msa0529930:intron | 30.0% | |
| AGTGAATGAAAACTTGAAAG+TGG | - | chr4_1:3809289-3809308 | None:intergenic | 30.0% | |
| !! | TTCAAGTTTTCATTCACTTC+TGG | + | chr4_1:3809291-3809310 | Msa0529930:intron | 30.0% |
| GTATTGTTCGCTCAATTTAA+AGG | + | chr4_1:3809313-3809332 | Msa0529930:intron | 30.0% | |
| ATTCAATGACATTACTTGGA+TGG | - | chr4_1:3809344-3809363 | None:intergenic | 30.0% | |
| ! | TTTAAGTTTGACAGCACAAT+TGG | - | chr4_1:3809599-3809618 | None:intergenic | 30.0% |
| AACAACAACAACAACAGTTA+AGG | - | chr4_1:3809747-3809766 | None:intergenic | 30.0% | |
| ACTTTGTCTCATCCATAATT+TGG | - | chr4_1:3810138-3810157 | None:intergenic | 30.0% | |
| AATTATGGATGAGACAAAGT+CGG | + | chr4_1:3810138-3810157 | Msa0529930:CDS | 30.0% | |
| !! | GCAAAAACTAATTCTGAAAC+TGG | + | chr4_1:3810268-3810287 | Msa0529930:CDS | 30.0% |
| ATCATCTCAATCCAACAAAA+AGG | + | chr4_1:3810435-3810454 | Msa0529930:CDS | 30.0% | |
| TCTTATCCTTTCTGTTAGAA+GGG | - | chr4_1:3810498-3810517 | None:intergenic | 30.0% | |
| CTAGTTTCTGACCTTAAAAA+TGG | + | chr4_1:3810550-3810569 | Msa0529930:CDS | 30.0% | |
| !! | TTGCAATCTTCCCATTTTTA+AGG | - | chr4_1:3810564-3810583 | None:intergenic | 30.0% |
| !!! | CAGTTTTTTTTGGATTTAGC+AGG | - | chr4_1:3810589-3810608 | None:intergenic | 30.0% |
| ATCATCTCAATCCAACAAAA+AGG | + | chr4_1:3810435-3810454 | Msa0529930:CDS | 30.0% | |
| AAAAGATGTTCCCTTTACAA+AGG | + | chr4_1:3810987-3811006 | Msa0529930:CDS | 30.0% | |
| ACAAAGGATATCATTCATGA+AGG | + | chr4_1:3811003-3811022 | Msa0529930:CDS | 30.0% | |
| TCAATATTGACGCAGAATTA+GGG | - | chr4_1:3811089-3811108 | None:intergenic | 30.0% | |
| TTCAATATTGACGCAGAATT+AGG | - | chr4_1:3811090-3811109 | None:intergenic | 30.0% | |
| AAAGTTTGATGGAAAAGTTG+TGG | + | chr4_1:3811248-3811267 | Msa0529930:CDS | 30.0% | |
| CAACAAATCATCTACTAAGA+AGG | + | chr4_1:3811443-3811462 | Msa0529930:CDS | 30.0% | |
| GATTCTTACATCTTGTCTAA+TGG | - | chr4_1:3811641-3811660 | None:intergenic | 30.0% | |
| ! | TGTGTGTAATTATTTTCTGC+AGG | + | chr4_1:3811831-3811850 | Msa0529930:intron | 30.0% |
| ! | ATTTTCTGCAGGTATTATGA+AGG | + | chr4_1:3811842-3811861 | Msa0529930:intron | 30.0% |
| AATGCTTATGATCATGTCAA+CGG | + | chr4_1:3811872-3811891 | Msa0529930:CDS | 30.0% | |
| TAAATCTCAAGAATGAGCAA+TGG | + | chr4_1:3811936-3811955 | Msa0529930:CDS | 30.0% | |
| AAATCTCAAGAATGAGCAAT+GGG | + | chr4_1:3811937-3811956 | Msa0529930:CDS | 30.0% | |
| TGTTAATGTTTCACCAGATA+AGG | + | chr4_1:3811970-3811989 | Msa0529930:CDS | 30.0% | |
| !! | AGTTTTGTACTAACCTTATC+TGG | - | chr4_1:3811986-3812005 | None:intergenic | 30.0% |
| ATGAGATACATGATAGTACA+AGG | - | chr4_1:3812103-3812122 | None:intergenic | 30.0% | |
| ! | ATTATTACTGTCCGATTTGT+CGG | - | chr4_1:3812249-3812268 | None:intergenic | 30.0% |
| ! | AGAACAGTTTGTTTATTCGA+TGG | - | chr4_1:3812462-3812481 | None:intergenic | 30.0% |
| !! | TGATTTGGTTGATGATTTCA+TGG | + | chr4_1:3812573-3812592 | Msa0529930:CDS | 30.0% |
| !! | CTTCATTCTTTTGGTGATAT+AGG | - | chr4_1:3812607-3812626 | None:intergenic | 30.0% |
| ! | TGAATCAGTCTTCATTCTTT+TGG | - | chr4_1:3812616-3812635 | None:intergenic | 30.0% |
| !! | CTATAGACCTAACTACTTTT+TGG | - | chr4_1:3812643-3812662 | None:intergenic | 30.0% |
| AAAAGTAGTTAGGTCTATAG+AGG | + | chr4_1:3812643-3812662 | Msa0529930:three_prime_UTR | 30.0% | |
| TATGGTACTTTCTGTTAGAA+TGG | + | chr4_1:3812680-3812699 | Msa0529930:three_prime_UTR | 30.0% | |
| TCTCTATTAAGTCTTCAAAC+AGG | - | chr4_1:3812762-3812781 | None:intergenic | 30.0% | |
| ! | AACAGAAGAAGCTAGGTTTT+TGG | - | chr4_1:3807158-3807177 | None:intergenic | 35.0% |
| GAATATCAACAGAAGAAGCT+AGG | - | chr4_1:3807165-3807184 | None:intergenic | 35.0% | |
| GACCAGAAGTTCAATTACAA+TGG | - | chr4_1:3807290-3807309 | None:intergenic | 35.0% | |
| TATCTTCTGATCAGGAGTTT+AGG | + | chr4_1:3807366-3807385 | Msa0529930:intron | 35.0% | |
| ATCTTCTGATCAGGAGTTTA+GGG | + | chr4_1:3807367-3807386 | Msa0529930:intron | 35.0% | |
| ATGCAGTAAACAACTGTAAG+AGG | - | chr4_1:3807895-3807914 | None:intergenic | 35.0% | |
| AGTGAAAATCACCAAACAGA+AGG | - | chr4_1:3807984-3808003 | None:intergenic | 35.0% | |
| GGAGCTGTTATTGTTAAACT+TGG | + | chr4_1:3808014-3808033 | Msa0529930:CDS | 35.0% | |
| AGCACAAGTGATTCTTGAAT+TGG | - | chr4_1:3808057-3808076 | None:intergenic | 35.0% | |
| !!! | CAAGTGCTTTTTTGTATCTG+CGG | - | chr4_1:3808393-3808412 | None:intergenic | 35.0% |
| TGTGTCAGTGTTACATAAAC+CGG | - | chr4_1:3808605-3808624 | None:intergenic | 35.0% | |
| ! | ACCTCTTCAATCTAAAGTGT+CGG | + | chr4_1:3808742-3808761 | Msa0529930:intron | 35.0% |
| AACAATGCAAAACCAAAGGA+AGG | - | chr4_1:3808795-3808814 | None:intergenic | 35.0% | |
| CAAAGATTTGCAACAAAGCA+TGG | - | chr4_1:3808852-3808871 | None:intergenic | 35.0% | |
| ! | ACTCTCTTTTCTACAAGCTT+GGG | - | chr4_1:3808885-3808904 | None:intergenic | 35.0% |
| ! | AACTCTCTTTTCTACAAGCT+TGG | - | chr4_1:3808886-3808905 | None:intergenic | 35.0% |
| GAAAACTTTGTTGAGTCCTT+AGG | + | chr4_1:3808925-3808944 | Msa0529930:intron | 35.0% | |
| TCTGATAAGTCATTGCTCAT+AGG | + | chr4_1:3808974-3808993 | Msa0529930:intron | 35.0% | |
| AGCTTAAGGCTTAAGCTATT+AGG | - | chr4_1:3809121-3809140 | None:intergenic | 35.0% | |
| TCAATGGAGATAGTAATGAC+CGG | + | chr4_1:3809363-3809382 | Msa0529930:CDS | 35.0% | |
| CGAAAGTGAAGATATTTCCT+CGG | + | chr4_1:3809395-3809414 | Msa0529930:CDS | 35.0% | |
| ATATTTCCTCGGATCTACTT+AGG | + | chr4_1:3809406-3809425 | Msa0529930:CDS | 35.0% | |
| ATAATGCAAAGCATGTTACC+TGG | - | chr4_1:3809461-3809480 | None:intergenic | 35.0% | |
| AGACATAGGTGAAATCATCT+GGG | - | chr4_1:3809551-3809570 | None:intergenic | 35.0% | |
| AAGACATAGGTGAAATCATC+TGG | - | chr4_1:3809552-3809571 | None:intergenic | 35.0% | |
| AGATGATTTCACCTATGTCT+TGG | + | chr4_1:3809551-3809570 | Msa0529930:intron | 35.0% | |
| TCAACTGCTTTCATGAGATA+AGG | - | chr4_1:3809622-3809641 | None:intergenic | 35.0% | |
| CTGGAGATTCAGATTTATTG+TGG | - | chr4_1:3809696-3809715 | None:intergenic | 35.0% | |
| !!! | TCTTTTGAAGAAGTGCTAAG+TGG | + | chr4_1:3809810-3809829 | Msa0529930:intron | 35.0% |
| ATCCAAAAGCTTACTGAGAA+AGG | - | chr4_1:3809976-3809995 | None:intergenic | 35.0% | |
| TTCACTCACAATTATAACGC+TGG | + | chr4_1:3810006-3810025 | Msa0529930:intron | 35.0% | |
| TCTTAAAATCAGGTGACTAC+AGG | + | chr4_1:3810079-3810098 | Msa0529930:intron | 35.0% | |
| CTTAAAATCAGGTGACTACA+GGG | + | chr4_1:3810080-3810099 | Msa0529930:intron | 35.0% | |
| TTAAAATCAGGTGACTACAG+GGG | + | chr4_1:3810081-3810100 | Msa0529930:intron | 35.0% | |
| TGTGAGAGATGTCCAAATTA+TGG | + | chr4_1:3810123-3810142 | Msa0529930:CDS | 35.0% | |
| AGGTTTGTAATTGGACAAGA+AGG | - | chr4_1:3810235-3810254 | None:intergenic | 35.0% | |
| CAATTACAAACCTCGAAAGA+CGG | + | chr4_1:3810242-3810261 | Msa0529930:CDS | 35.0% | |
| TGATAACCCTTCTAACAGAA+AGG | + | chr4_1:3810489-3810508 | Msa0529930:CDS | 35.0% | |
| GTCTTATCCTTTCTGTTAGA+AGG | - | chr4_1:3810499-3810518 | None:intergenic | 35.0% | |
| GAATCAGGACTTTCAATACA+CGG | - | chr4_1:3810631-3810650 | None:intergenic | 35.0% | |
| ! | TCTTATCCTTTCTGGAAGAA+GGG | - | chr4_1:3810747-3810766 | None:intergenic | 35.0% |
| !! | AACTCCAGAAGCTTTAGTTT+TGG | + | chr4_1:3810942-3810961 | Msa0529930:CDS | 35.0% |
| GATTCCAAAACTAAAGCTTC+TGG | - | chr4_1:3810949-3810968 | None:intergenic | 35.0% | |
| GAAGGAAAGTTAGTAGCATT+GGG | + | chr4_1:3811049-3811068 | Msa0529930:CDS | 35.0% | |
| AAGGAAAGTTAGTAGCATTG+GGG | + | chr4_1:3811050-3811069 | Msa0529930:CDS | 35.0% | |
| ACAGAAGTCTTCTTATGTGA+AGG | - | chr4_1:3811129-3811148 | None:intergenic | 35.0% | |
| ! | TTAGCAACTATTGATTGAGG+AGG | - | chr4_1:3811276-3811295 | None:intergenic | 35.0% |
| TCCTCAATCAATAGTTGCTA+AGG | + | chr4_1:3811275-3811294 | Msa0529930:CDS | 35.0% | |
| ! | ACCTTAGCAACTATTGATTG+AGG | - | chr4_1:3811279-3811298 | None:intergenic | 35.0% |
| TCAATCAATAGTTGCTAAGG+TGG | + | chr4_1:3811278-3811297 | Msa0529930:CDS | 35.0% | |
| CAAGTCGAGTACAAATACTA+AGG | + | chr4_1:3811335-3811354 | Msa0529930:CDS | 35.0% | |
| TAAGGTAGAAAATAGAGCAG+AGG | + | chr4_1:3811353-3811372 | Msa0529930:CDS | 35.0% | |
| AAGGTAGAAAATAGAGCAGA+GGG | + | chr4_1:3811354-3811373 | Msa0529930:CDS | 35.0% | |
| CTCAAATAGAAGTCGACAAA+AGG | + | chr4_1:3811388-3811407 | Msa0529930:CDS | 35.0% | |
| !! | GTAACTCATTGGTTGGTAAA+AGG | + | chr4_1:3811600-3811619 | Msa0529930:CDS | 35.0% |
| !! | ATTGGTTGGTAAAAGGATCA+AGG | + | chr4_1:3811607-3811626 | Msa0529930:CDS | 35.0% |
| TCATGTATCTCATTATGTGC+AGG | + | chr4_1:3812110-3812129 | Msa0529930:intron | 35.0% | |
| CATGTATCTCATTATGTGCA+GGG | + | chr4_1:3812111-3812130 | Msa0529930:intron | 35.0% | |
| ! | ACCTTTAAGAGACTTCAACT+TGG | - | chr4_1:3812158-3812177 | None:intergenic | 35.0% |
| !! | ACTTTAAAGCACCGACAAAT+CGG | + | chr4_1:3812235-3812254 | Msa0529930:intron | 35.0% |
| CAAAAAGCCCATAATATAGC+AGG | + | chr4_1:3812394-3812413 | Msa0529930:intron | 35.0% | |
| ATGTTGTTGCAGATCTGATT+TGG | + | chr4_1:3812558-3812577 | Msa0529930:intron | 35.0% | |
| !! | CATTCTTTTGGTGATATAGG+TGG | - | chr4_1:3812604-3812623 | None:intergenic | 35.0% |
| TCACACACCAAAAAGTAGTT+AGG | + | chr4_1:3812633-3812652 | Msa0529930:three_prime_UTR | 35.0% | |
| GAGGAATGTGTCAAACTTTA+TGG | + | chr4_1:3812662-3812681 | Msa0529930:three_prime_UTR | 35.0% | |
| GAACATGTGAATGTTAACGT+AGG | + | chr4_1:3812734-3812753 | Msa0529930:three_prime_UTR | 35.0% | |
| ! | GGAGTTTAGGGTTTGTGTTA+TGG | + | chr4_1:3807379-3807398 | Msa0529930:intron | 40.0% |
| CAAATTATTACCGGTGTCTG+TGG | + | chr4_1:3807561-3807580 | Msa0529930:intron | 40.0% | |
| ACTCTGCTCAATGCCAATTT+CGG | + | chr4_1:3807632-3807651 | Msa0529930:intron | 40.0% | |
| CAGTGCATGATAGAACACTA+TGG | + | chr4_1:3807700-3807719 | Msa0529930:intron | 40.0% | |
| ! | AGTGATTCTTGAATTGGCTC+AGG | - | chr4_1:3808051-3808070 | None:intergenic | 40.0% |
| TGATTCTTGCAATCTCAGTG+AGG | - | chr4_1:3808155-3808174 | None:intergenic | 40.0% | |
| GAAAACTTGTCTCATGCATC+TGG | + | chr4_1:3808367-3808386 | Msa0529930:CDS | 40.0% | |
| GTTGAAACATCTCAACAACC+AGG | - | chr4_1:3808480-3808499 | None:intergenic | 40.0% | |
| TGATTCAACAACGACACATG+TGG | - | chr4_1:3808706-3808725 | None:intergenic | 40.0% | |
| GTTGAATCAGTGTCAGACAT+CGG | + | chr4_1:3808717-3808736 | Msa0529930:intron | 40.0% | |
| ACCGACACTTTAGATTGAAG+AGG | - | chr4_1:3808746-3808765 | None:intergenic | 40.0% | |
| TGAAACTTGATGCCTTCCTT+TGG | + | chr4_1:3808780-3808799 | Msa0529930:intron | 40.0% | |
| GTTGCAAATCTTTGCATGAC+CGG | + | chr4_1:3808858-3808877 | Msa0529930:intron | 40.0% | |
| ACGGATCATCTACGTGATAA+TGG | + | chr4_1:3808950-3808969 | Msa0529930:intron | 40.0% | |
| TGCTCATAGGAAACATTTCG+TGG | + | chr4_1:3808987-3809006 | Msa0529930:intron | 40.0% | |
| CATTTCGTGGAAAAAAGCTC+TGG | + | chr4_1:3809000-3809019 | Msa0529930:intron | 40.0% | |
| ! | AATCAGAGCCTTTTCACACT+AGG | - | chr4_1:3809054-3809073 | None:intergenic | 40.0% |
| AGGCTTAAGCTATTAGGTGA+AGG | - | chr4_1:3809115-3809134 | None:intergenic | 40.0% | |
| CAATGGAGATAGTAATGACC+GGG | + | chr4_1:3809364-3809383 | Msa0529930:CDS | 40.0% | |
| TAGTGTAAGAAAGGAGAACC+AGG | + | chr4_1:3809440-3809459 | Msa0529930:CDS | 40.0% | |
| GACATAGGTGAAATCATCTG+GGG | - | chr4_1:3809550-3809569 | None:intergenic | 40.0% | |
| TTCACCTATGTCTTGGACTT+TGG | + | chr4_1:3809558-3809577 | Msa0529930:CDS | 40.0% | |
| TCACCTATGTCTTGGACTTT+GGG | + | chr4_1:3809559-3809578 | Msa0529930:CDS | 40.0% | |
| ATGAAAGCAGTTGAATCCTC+AGG | + | chr4_1:3809628-3809647 | Msa0529930:CDS | 40.0% | |
| TGATTGTGTTGCAATGCTTC+AGG | + | chr4_1:3809876-3809895 | Msa0529930:intron | 40.0% | |
| TTTACTTCACAGGGTTCTTC+AGG | - | chr4_1:3809943-3809962 | None:intergenic | 40.0% | |
| ! | GTCCTTTCTCAGTAAGCTTT+TGG | + | chr4_1:3809971-3809990 | Msa0529930:intron | 40.0% |
| CGTCTTTCGAGGTTTGTAAT+TGG | - | chr4_1:3810244-3810263 | None:intergenic | 40.0% | |
| ! | TTTTTGCATTCCGTCTTTCG+AGG | - | chr4_1:3810255-3810274 | None:intergenic | 40.0% |
| ! | TGGCAATTTAGAGTCAGATC+AGG | + | chr4_1:3810288-3810307 | Msa0529930:CDS | 40.0% |
| TCGGGATTCATTAAGGAGTT+AGG | - | chr4_1:3810367-3810386 | None:intergenic | 40.0% | |
| TAACTCCTTAATGAATCCCG+AGG | + | chr4_1:3810366-3810385 | Msa0529930:CDS | 40.0% | |
| AGAGTGATTATAGCCTTCCT+CGG | - | chr4_1:3810386-3810405 | None:intergenic | 40.0% | |
| ! | GTCATCATGAGCCTTTTTGT+TGG | - | chr4_1:3810449-3810468 | None:intergenic | 40.0% |
| CTGTTAGAAGGGTTATCAGA+TGG | - | chr4_1:3810487-3810506 | None:intergenic | 40.0% | |
| TGAAAGTCCTGATTCTACCA+AGG | + | chr4_1:3810636-3810655 | Msa0529930:CDS | 40.0% | |
| GAAAGTCCTGATTCTACCAA+GGG | + | chr4_1:3810637-3810656 | Msa0529930:CDS | 40.0% | |
| CTAATACCCTTGGTAGAATC+AGG | - | chr4_1:3810646-3810665 | None:intergenic | 40.0% | |
| ACTTGACTGTCTAATACCCT+TGG | - | chr4_1:3810656-3810675 | None:intergenic | 40.0% | |
| ! | GTCATCATGAGCCTTTTTGT+TGG | - | chr4_1:3810449-3810468 | None:intergenic | 40.0% |
| TGATAACCCTTCTTCCAGAA+AGG | + | chr4_1:3810738-3810757 | Msa0529930:CDS | 40.0% | |
| ! | GTCTTATCCTTTCTGGAAGA+AGG | - | chr4_1:3810748-3810767 | None:intergenic | 40.0% |
| GAATCAGGACTTTCAATGCA+CGG | - | chr4_1:3810880-3810899 | None:intergenic | 40.0% | |
| TGAAAGTCCTGATTCTACCA+AGG | + | chr4_1:3810636-3810655 | Msa0529930:CDS | 40.0% | |
| GAAAGTCCTGATTCTACCAA+GGG | + | chr4_1:3810637-3810656 | Msa0529930:CDS | 40.0% | |
| CTAATACCCTTGGTAGAATC+AGG | - | chr4_1:3810646-3810665 | None:intergenic | 40.0% | |
| ATTTGACGGTCTAATACCCT+TGG | - | chr4_1:3810905-3810924 | None:intergenic | 40.0% | |
| ATTAGACCGTCAAATCCTGA+AGG | + | chr4_1:3810910-3810929 | Msa0529930:CDS | 40.0% | |
| CGAAGGAAAGTTAGTAGCAT+TGG | + | chr4_1:3811048-3811067 | Msa0529930:CDS | 40.0% | |
| AAGACTTCTGTTGAATCCCA+TGG | + | chr4_1:3811138-3811157 | Msa0529930:CDS | 40.0% | |
| ! | ATTTTTCTTCCCAGCACCAT+GGG | - | chr4_1:3811157-3811176 | None:intergenic | 40.0% |
| ! | TATTTTTCTTCCCAGCACCA+TGG | - | chr4_1:3811158-3811177 | None:intergenic | 40.0% |
| ! | GGATTCTGAAGAGAAACATG+AGG | + | chr4_1:3811197-3811216 | Msa0529930:CDS | 40.0% |
| ! | TGAAGACCTTGGTAACTCAT+TGG | + | chr4_1:3811589-3811608 | Msa0529930:CDS | 40.0% |
| TACCAACCAATGAGTTACCA+AGG | - | chr4_1:3811598-3811617 | None:intergenic | 40.0% | |
| TTGGTAAAAGGATCAAGGTC+TGG | + | chr4_1:3811612-3811631 | Msa0529930:CDS | 40.0% | |
| !! | ACTTTGGTCTTAGCTACACT+AGG | + | chr4_1:3811731-3811750 | Msa0529930:intron | 40.0% |
| ! | GCCAAGTTGAAGTCTCTTAA+AGG | + | chr4_1:3812154-3812173 | Msa0529930:intron | 40.0% |
| AATGCAAACTCACCTGGATA+GGG | - | chr4_1:3812189-3812208 | None:intergenic | 40.0% | |
| CATATGTCAGTGTCACACAA+CGG | + | chr4_1:3812297-3812316 | Msa0529930:intron | 40.0% | |
| ! | ACACCTTCAATCTGAAGTGT+CGG | + | chr4_1:3812322-3812341 | Msa0529930:intron | 40.0% |
| TGCTGCACTAGTTAGTAAGT+GGG | + | chr4_1:3812345-3812364 | Msa0529930:intron | 40.0% | |
| TTGAGAGTCACTTCTACTAC+TGG | - | chr4_1:3812377-3812396 | None:intergenic | 40.0% | |
| GCAAACCTTATGGTTGAGTG+AGG | + | chr4_1:3807440-3807459 | Msa0529930:intron | 45.0% | |
| AACCTTATGGTTGAGTGAGG+TGG | + | chr4_1:3807443-3807462 | Msa0529930:intron | 45.0% | |
| TTCCACCTCACTCAACCATA+AGG | - | chr4_1:3807448-3807467 | None:intergenic | 45.0% | |
| GCATCAACACCTCTGATCAA+AGG | + | chr4_1:3807478-3807497 | Msa0529930:intron | 45.0% | |
| !! | CCTCTGATCAAAGGTGTTTC+CGG | + | chr4_1:3807487-3807506 | Msa0529930:intron | 45.0% |
| TGCTCAATGCCAATTTCGGT+GGG | + | chr4_1:3807636-3807655 | Msa0529930:intron | 45.0% | |
| CCTATTCCACTAAGTGAGGT+CGG | - | chr4_1:3807745-3807764 | None:intergenic | 45.0% | |
| CGACCTCACTTAGTGGAATA+GGG | + | chr4_1:3807743-3807762 | Msa0529930:intron | 45.0% | |
| AAGCCCTATTCCACTAAGTG+AGG | - | chr4_1:3807749-3807768 | None:intergenic | 45.0% | |
| TCACTTAGTGGAATAGGGCT+TGG | + | chr4_1:3807748-3807767 | Msa0529930:intron | 45.0% | |
| ! | GATTCTTGAATTGGCTCAGG+TGG | - | chr4_1:3808048-3808067 | None:intergenic | 45.0% |
| CATCTCCGTTCACTGTTAAC+AGG | + | chr4_1:3808315-3808334 | Msa0529930:intron | 45.0% | |
| ACAAATACCAGACACGACAC+TGG | + | chr4_1:3808628-3808647 | Msa0529930:intron | 45.0% | |
| ! | CTTTTCTACAAGCTTGGGAC+CGG | - | chr4_1:3808880-3808899 | None:intergenic | 45.0% |
| TTTGTTGAGTCCTTAGGGCA+CGG | + | chr4_1:3808931-3808950 | Msa0529930:intron | 45.0% | |
| ! | CTTTTCACACTAGGTGAGGT+TGG | - | chr4_1:3809045-3809064 | None:intergenic | 45.0% |
| CAACCTCACCTAGTGTGAAA+AGG | + | chr4_1:3809043-3809062 | Msa0529930:intron | 45.0% | |
| TTCACTTTCGTCGAGTATCC+CGG | - | chr4_1:3809385-3809404 | None:intergenic | 45.0% | |
| CACCTATGTCTTGGACTTTG+GGG | + | chr4_1:3809560-3809579 | Msa0529930:CDS | 45.0% | |
| ACCTATGTCTTGGACTTTGG+GGG | + | chr4_1:3809561-3809580 | Msa0529930:CDS | 45.0% | |
| CAGAGCTCTCAATGAGTATG+TGG | + | chr4_1:3809651-3809670 | Msa0529930:CDS | 45.0% | |
| TCCAGAACGTCATGATTCAG+TGG | + | chr4_1:3809711-3809730 | Msa0529930:CDS | 45.0% | |
| AGAACGTCATGATTCAGTGG+CGG | + | chr4_1:3809714-3809733 | Msa0529930:CDS | 45.0% | |
| ! | TGTTGCAATGCTTCAGGTTC+AGG | + | chr4_1:3809882-3809901 | Msa0529930:intron | 45.0% |
| !! | GGTTCTTCAGGAGCATCTTT+AGG | - | chr4_1:3809931-3809950 | None:intergenic | 45.0% |
| !! | CGCTGGCTTCATCAAATCAT+TGG | + | chr4_1:3810023-3810042 | Msa0529930:intron | 45.0% |
| ACTGAACTCCAAAACTCAGC+TGG | + | chr4_1:3810312-3810331 | Msa0529930:CDS | 45.0% | |
| ! | CACAGTATCCAGCTGAGTTT+TGG | - | chr4_1:3810323-3810342 | None:intergenic | 45.0% |
| TCCTTAATGAATCCCGAGGA+AGG | + | chr4_1:3810370-3810389 | Msa0529930:CDS | 45.0% | |
| GAGTGATTATAGCCTTCCTC+GGG | - | chr4_1:3810385-3810404 | None:intergenic | 45.0% | |
| CAGTCAAAGCCTGAAACTGT+CGG | + | chr4_1:3810520-3810539 | Msa0529930:CDS | 45.0% | |
| CTGGAAGAAGGGTTATCAGA+TGG | - | chr4_1:3810736-3810755 | None:intergenic | 45.0% | |
| TGACTGCGTCTTATCCTTTC+TGG | - | chr4_1:3810755-3810774 | None:intergenic | 45.0% | |
| CAGTCAAAGCCTGAAACTGT+CGG | + | chr4_1:3810520-3810539 | Msa0529930:CDS | 45.0% | |
| CTCACACCTTCAGGATTTGA+CGG | - | chr4_1:3810919-3810938 | None:intergenic | 45.0% | |
| TGCTACTAACTTTCCTTCGC+CGG | - | chr4_1:3811047-3811066 | None:intergenic | 45.0% | |
| AGTTGCTAAGGTGGAATCTG+AGG | + | chr4_1:3811287-3811306 | Msa0529930:CDS | 45.0% | |
| GTAGAAAATAGAGCAGAGGG+AGG | + | chr4_1:3811357-3811376 | Msa0529930:CDS | 45.0% | |
| ! | GTCGACTTCTATTTGAGCTG+AGG | - | chr4_1:3811385-3811404 | None:intergenic | 45.0% |
| GCACATGAACATGAAGACCT+TGG | + | chr4_1:3811578-3811597 | Msa0529930:CDS | 45.0% | |
| ! | GACCTTGGTAACTCATTGGT+TGG | + | chr4_1:3811593-3811612 | Msa0529930:CDS | 45.0% |
| GTAAAAGGATCAAGGTCTGG+TGG | + | chr4_1:3811615-3811634 | Msa0529930:CDS | 45.0% | |
| ! | TCATGTCAACGGAAAGCACA+AGG | + | chr4_1:3811883-3811902 | Msa0529930:CDS | 45.0% |
| AGGTGAAAAGATCCCTATCC+AGG | + | chr4_1:3812174-3812193 | Msa0529930:intron | 45.0% | |
| GAATGCAAACTCACCTGGAT+AGG | - | chr4_1:3812190-3812209 | None:intergenic | 45.0% | |
| TGCATTCGAGGCAAGACATT+TGG | + | chr4_1:3812203-3812222 | Msa0529930:intron | 45.0% | |
| GCATTCGAGGCAAGACATTT+GGG | + | chr4_1:3812204-3812223 | Msa0529930:intron | 45.0% | |
| GTGCTGCACTAGTTAGTAAG+TGG | + | chr4_1:3812344-3812363 | Msa0529930:intron | 45.0% | |
| GTCACTTCTACTACTGGACT+CGG | - | chr4_1:3812371-3812390 | None:intergenic | 45.0% | |
| CCGGAAACACCTTTGATCAG+AGG | - | chr4_1:3807490-3807509 | None:intergenic | 50.0% | |
| CACATGTGTCAGTGTCGTGT+CGG | - | chr4_1:3807516-3807535 | None:intergenic | 50.0% | |
| CAAGCTAACACCACAGACAC+CGG | - | chr4_1:3807574-3807593 | None:intergenic | 50.0% | |
| ! | GGTGTCTGTGGTGTTAGCTT+GGG | + | chr4_1:3807573-3807592 | Msa0529930:intron | 50.0% |
| CTTAGAGTGTGCTCCTCTCA+GGG | + | chr4_1:3807598-3807617 | Msa0529930:intron | 50.0% | |
| CTGCTCAATGCCAATTTCGG+TGG | + | chr4_1:3807635-3807654 | Msa0529930:intron | 50.0% | |
| CCAAACTAGCCCACCGAAAT+TGG | - | chr4_1:3807648-3807667 | None:intergenic | 50.0% | |
| !! | CCAATTTCGGTGGGCTAGTT+TGG | + | chr4_1:3807645-3807664 | Msa0529930:intron | 50.0% |
| ACTAAGTGAGGTCGGCTACA+TGG | - | chr4_1:3807737-3807756 | None:intergenic | 50.0% | |
| ATGTAGCCGACCTCACTTAG+TGG | + | chr4_1:3807736-3807755 | Msa0529930:intron | 50.0% | |
| CCGACCTCACTTAGTGGAAT+AGG | + | chr4_1:3807742-3807761 | Msa0529930:intron | 50.0% | |
| ACTTGTGTCAGTGTCCTGTC+CGG | + | chr4_1:3807793-3807812 | Msa0529930:intron | 50.0% | |
| ACCAACACAGACACGTACAC+CGG | - | chr4_1:3807815-3807834 | None:intergenic | 50.0% | |
| CAACCAGGTCATCACACTCA+AGG | - | chr4_1:3808465-3808484 | None:intergenic | 50.0% | |
| ! | GAGCCTTTTCACACTAGGTG+AGG | - | chr4_1:3809049-3809068 | None:intergenic | 50.0% |
| TAAGGGCCTAAGTAGATCCG+AGG | - | chr4_1:3809415-3809434 | None:intergenic | 50.0% | |
| TCCCCCAAAGTCCAAGACAT+AGG | - | chr4_1:3809565-3809584 | None:intergenic | 50.0% | |
| GCCACTGAATCATGACGTTC+TGG | - | chr4_1:3809715-3809734 | None:intergenic | 50.0% | |
| GGTGACTACAGGGGTTGAAA+TGG | + | chr4_1:3810090-3810109 | Msa0529930:intron | 50.0% | |
| ! | ATCGTCGACTGTAGCTGCAT+TGG | - | chr4_1:3810176-3810195 | None:intergenic | 50.0% |
| TGGATACTGTGCCAAGGAAG+AGG | + | chr4_1:3810332-3810351 | Msa0529930:CDS | 50.0% | |
| GGATACTGTGCCAAGGAAGA+GGG | + | chr4_1:3810333-3810352 | Msa0529930:CDS | 50.0% | |
| GCCTTCCTCGGGATTCATTA+AGG | - | chr4_1:3810374-3810393 | None:intergenic | 50.0% | |
| AGAGCTTCACCGACAGTTTC+AGG | - | chr4_1:3810532-3810551 | None:intergenic | 50.0% | |
| ! | GGAGTTTTGCTCACACCTTC+AGG | - | chr4_1:3810928-3810947 | None:intergenic | 50.0% |
| GAAGCTCTACTAAACGACGC+CGG | + | chr4_1:3811025-3811044 | Msa0529930:CDS | 50.0% | |
| TCTGTTGAATCCCATGGTGC+TGG | + | chr4_1:3811144-3811163 | Msa0529930:CDS | 50.0% | |
| CTGTTGAATCCCATGGTGCT+GGG | + | chr4_1:3811145-3811164 | Msa0529930:CDS | 50.0% | |
| GTTGTACGACGACGATGTTG+AGG | + | chr4_1:3811907-3811926 | Msa0529930:CDS | 50.0% | |
| TCGCGCATACTGATACTTCC+AGG | + | chr4_1:3812053-3812072 | Msa0529930:intron | 50.0% | |
| CGCGCATACTGATACTTCCA+GGG | + | chr4_1:3812054-3812073 | Msa0529930:intron | 50.0% | |
| GCGCATACTGATACTTCCAG+GGG | + | chr4_1:3812055-3812074 | Msa0529930:intron | 50.0% | |
| TCCAGGTGAGTTTGCATTCG+AGG | + | chr4_1:3812191-3812210 | Msa0529930:intron | 50.0% | |
| ! | GCACCGACACTTCAGATTGA+AGG | - | chr4_1:3812328-3812347 | None:intergenic | 50.0% |
| ! | CGGTGTCTGTGGTGTTAGCT+TGG | + | chr4_1:3807572-3807591 | Msa0529930:intron | 55.0% |
| ! | CCTGAGAGGAGCACACTCTA+AGG | - | chr4_1:3807600-3807619 | None:intergenic | 55.0% |
| CCTTAGAGTGTGCTCCTCTC+AGG | + | chr4_1:3807597-3807616 | Msa0529930:intron | 55.0% | |
| TCCGGTGTACGTGTCTGTGT+TGG | + | chr4_1:3807811-3807830 | Msa0529930:intron | 55.0% | |
| GGACCTTGAGTGTGATGACC+TGG | + | chr4_1:3808459-3808478 | Msa0529930:CDS | 55.0% | |
| ACCAGACACGACACTGGCAT+TGG | + | chr4_1:3808634-3808653 | Msa0529930:intron | 55.0% | |
| ACCAATGCCAGTGTCGTGTC+TGG | - | chr4_1:3808638-3808657 | None:intergenic | 55.0% | |
| CGTAGATGATCCGTGCCCTA+AGG | - | chr4_1:3808944-3808963 | None:intergenic | 55.0% | |
| ! | ACTAGGTGAGGTTGGCTGCA+TGG | - | chr4_1:3809037-3809056 | None:intergenic | 55.0% |
| CTCATTGAGAGCTCTGCCTG+AGG | - | chr4_1:3809647-3809666 | None:intergenic | 55.0% | |
| CTCAGCTGGATACTGTGCCA+AGG | + | chr4_1:3810326-3810345 | Msa0529930:CDS | 55.0% | |
| GGAGCTTCACCGACAGTTTC+AGG | - | chr4_1:3810781-3810800 | None:intergenic | 55.0% | |
| ! | GAGAAACATGAGGCACCCGT+TGG | + | chr4_1:3811207-3811226 | Msa0529930:CDS | 55.0% |
| GCCTCGAATGCAAACTCACC+TGG | - | chr4_1:3812195-3812214 | None:intergenic | 55.0% | |
| GTCAGTGTCGTGTCGGACAC+CGG | - | chr4_1:3807509-3807528 | None:intergenic | 60.0% | |
| GTGTGCTCCTCTCAGGGTCT+CGG | + | chr4_1:3807604-3807623 | Msa0529930:intron | 60.0% | |
| TGTGCTCCTCTCAGGGTCTC+GGG | + | chr4_1:3807605-3807624 | Msa0529930:intron | 60.0% | |
| GTCAAACCCGAGACCCTGAG+AGG | - | chr4_1:3807614-3807633 | None:intergenic | 60.0% | |
| CACAGACACGTACACCGGAC+AGG | - | chr4_1:3807810-3807829 | None:intergenic | 60.0% | |
| GGCTTACGTGCCCTCTTCCT+TGG | - | chr4_1:3810346-3810365 | None:intergenic | 60.0% | |
| CTACTAAACGACGCCGGCGA+AGG | + | chr4_1:3811031-3811050 | Msa0529930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 3807085 | 3812800 | 3807085 | ID=Msa0529930;Name=Msa0529930 |
| chr4_1 | mRNA | 3807085 | 3812800 | 3807085 | ID=Msa0529930-mRNA-1;Parent=Msa0529930;Name=Msa0529930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=6|0.88|0.9|1|1|1|10|176|849 |
| chr4_1 | exon | 3807085 | 3807201 | 3807085 | ID=Msa0529930-mRNA-1:exon:1115;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3808009 | 3808212 | 3808009 | ID=Msa0529930-mRNA-1:exon:1116;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3808337 | 3808518 | 3808337 | ID=Msa0529930-mRNA-1:exon:1117;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3809335 | 3809461 | 3809335 | ID=Msa0529930-mRNA-1:exon:1118;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3809553 | 3809735 | 3809553 | ID=Msa0529930-mRNA-1:exon:1119;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3809898 | 3809981 | 3809898 | ID=Msa0529930-mRNA-1:exon:1120;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3810091 | 3811464 | 3810091 | ID=Msa0529930-mRNA-1:exon:1121;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3811578 | 3811651 | 3811578 | ID=Msa0529930-mRNA-1:exon:1122;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3811853 | 3812008 | 3811853 | ID=Msa0529930-mRNA-1:exon:1123;Parent=Msa0529930-mRNA-1 |
| chr4_1 | exon | 3812570 | 3812800 | 3812570 | ID=Msa0529930-mRNA-1:exon:1124;Parent=Msa0529930-mRNA-1 |
| chr4_1 | five_prime_UTR | 3807085 | 3807090 | 3807085 | ID=Msa0529930-mRNA-1:five_prime_utr;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3807091 | 3807201 | 3807091 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3808009 | 3808212 | 3808009 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3808337 | 3808518 | 3808337 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3809335 | 3809461 | 3809335 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3809553 | 3809735 | 3809553 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3809898 | 3809981 | 3809898 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3810091 | 3811464 | 3810091 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3811578 | 3811651 | 3811578 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3811853 | 3812008 | 3811853 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | CDS | 3812570 | 3812624 | 3812570 | ID=Msa0529930-mRNA-1:cds;Parent=Msa0529930-mRNA-1 |
| chr4_1 | three_prime_UTR | 3812625 | 3812800 | 3812625 | ID=Msa0529930-mRNA-1:three_prime_utr;Parent=Msa0529930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
