AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844240 MtrunA17_Chr5g0415221 98.889 90 0 1 20 108 35 124 2.43e-44 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844240 AT1G69970.2 34.375 96 58 3 15 108 10 102 3.05e-12 58.5

Find 56 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGGTTCTTAGAATTTC+TGG 0.050081 5_4:+22581128 Msa0844240:three_prime_UTR
TTCAGGAGAGCTGGAAATTC+TGG 0.279686 5_4:+22581002 Msa0844240:intron
AGGCACCACTTTGCTTTATA+CGG 0.313548 5_4:-22578746 None:intergenic
TCTATATGTCTTATAGTATA+GGG 0.318965 5_4:+22578995 Msa0844240:five_prime_UTR
TTAAGGAAGTTGATTTGTTA+AGG 0.321741 5_4:+22581175 Msa0844240:three_prime_UTR
AGAGAAGGAAGAGTAGTATA+AGG 0.331742 5_4:-22578900 None:intergenic
CCAGAAATTCTAAGAACCTT+AGG 0.344623 5_4:-22581128 None:intergenic
TGCTTTATACGGAGCAATAT+AGG 0.357132 5_4:-22578735 None:intergenic
TTCTATATGTCTTATAGTAT+AGG 0.362452 5_4:+22578994 Msa0844240:five_prime_UTR
GAAAACAAGAGAGAAAATAG+AGG 0.367300 5_4:-22578924 None:intergenic
TAAAGGATAAGGAGTTCTTT+TGG 0.375272 5_4:+22578658 None:intergenic
TTTATGTCATAGGACTATAT+AGG 0.386534 5_4:-22579036 None:intergenic
TAAACAAACCTGTTGTGAAT+AGG 0.400300 5_4:-22579362 None:intergenic
TAAGGAAGTTGATTTGTTAA+GGG 0.412984 5_4:+22581176 Msa0844240:three_prime_UTR
TTTAGAGTACTTGTAGTGGT+GGG 0.429193 5_4:+22579140 Msa0844240:CDS
TTAGTTAGTGGTGGAGGAAC+AGG 0.433994 5_4:+22579191 Msa0844240:CDS
TTTAGTAGCTTAGTTAGTGG+TGG 0.443725 5_4:+22579182 Msa0844240:CDS
GTGAACTTATATTGTGAAGA+TGG 0.444473 5_4:+22581323 Msa0844240:three_prime_UTR
CTTTAGAGTACTTGTAGTGG+TGG 0.451220 5_4:+22579139 Msa0844240:CDS
TGTCAACCATGATGCACAAT+TGG 0.454537 5_4:+22579295 Msa0844240:CDS
GACCAGATCCTATTCACAAC+AGG 0.455835 5_4:+22579354 Msa0844240:CDS
GCAAGGGCTAATCACACTTA+AGG 0.456267 5_4:+22581158 Msa0844240:three_prime_UTR
CATGATGAACAAGTTGTTGT+TGG 0.456308 5_4:+22579254 Msa0844240:CDS
CAGAAATTCTAAGAACCTTA+GGG 0.467727 5_4:-22581127 None:intergenic
TGAACTTATATTGTGAAGAT+GGG 0.468741 5_4:+22581324 Msa0844240:three_prime_UTR
AGAGAAAATAGAGGGAGAGA+AGG 0.476996 5_4:-22578915 None:intergenic
TGAATAGGATCTGGTCCATT+GGG 0.478116 5_4:-22579347 None:intergenic
TGGAGAGTCACAAATTTCAA+TGG 0.493022 5_4:+22581359 Msa0844240:three_prime_UTR
GAATTTCTGGCTTGTATGCA+AGG 0.494361 5_4:+22581141 Msa0844240:three_prime_UTR
TGGCCTTAAAAGGGGAAAAG+AGG 0.499443 5_4:+22581209 Msa0844240:three_prime_UTR
GGAAATTCTGGTAGACCTCC+TGG 0.500969 5_4:+22581014 Msa0844240:CDS
AGTAGCTTAGTTAGTGGTGG+AGG 0.503163 5_4:+22579185 Msa0844240:CDS
TTAGAGTACTTGTAGTGGTG+GGG 0.504583 5_4:+22579141 Msa0844240:CDS
AAGATGGGGTTAGACAGAAA+TGG 0.513157 5_4:+22581339 Msa0844240:three_prime_UTR
AACCTGTTGTGAATAGGATC+TGG 0.513984 5_4:-22579356 None:intergenic
TGATTTCATTTACATCCCTA+AGG 0.541887 5_4:+22581112 Msa0844240:three_prime_UTR
CTACGAAGGATTAAGGGGTG+TGG 0.547157 5_4:-22578851 None:intergenic
AAAACAAGAGAGAAAATAGA+GGG 0.547310 5_4:-22578923 None:intergenic
TTTCTTTAGAGTACTTGTAG+TGG 0.554539 5_4:+22579136 Msa0844240:CDS
GTGAATAGGATCTGGTCCAT+TGG 0.561168 5_4:-22579348 None:intergenic
AATTTCTGGCTTGTATGCAA+GGG 0.564648 5_4:+22581142 Msa0844240:three_prime_UTR
GAAGGATTAAGGGGTGTGGT+TGG 0.569824 5_4:-22578847 None:intergenic
TGAAGTCCAATTGTGCATCA+TGG 0.582511 5_4:-22579301 None:intergenic
TCAGTTGACTAAGTTTGACC+AGG 0.583639 5_4:-22581032 None:intergenic
ATACTTTCTCGAACTAAGAG+AGG 0.589250 5_4:-22578795 None:intergenic
AGTTGTTGTTGGTAAAGACA+AGG 0.593670 5_4:+22579265 Msa0844240:CDS
TTTAGGACTATATGTTTGAG+GGG 0.612589 5_4:+22581492 Msa0844240:three_prime_UTR
GACAAACAACTACAAGACAT+TGG 0.623172 5_4:+22579213 Msa0844240:CDS
TACTTTCTCGAACTAAGAGA+GGG 0.624715 5_4:-22578794 None:intergenic
TTAGGACTATATGTTTGAGG+GGG 0.628123 5_4:+22581493 Msa0844240:three_prime_UTR
TTGCTCCGTATAAAGCAAAG+TGG 0.638109 5_4:+22578741 Msa0844240:five_prime_UTR
AACTACAAGACATTGGTCAG+AGG 0.649811 5_4:+22579220 Msa0844240:CDS
GTTGTTGTTGGTAAAGACAA+GGG 0.652393 5_4:+22579266 Msa0844240:CDS
AGTAAAAGAAGAGTTCCCAA+TGG 0.653384 5_4:+22579332 Msa0844240:CDS
GAACTTATATTGTGAAGATG+GGG 0.662145 5_4:+22581325 Msa0844240:three_prime_UTR
GTTGACTAAGTTTGACCAGG+AGG 0.677258 5_4:-22581029 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTATTTTTATGTCAT+AGG - chr5_4:22579049-22579068 None:intergenic 10.0%
!! TTATACAATATTTAGAAAAT+AGG + chr5_4:22579600-22579619 Msa0844240:intron 10.0%
!!! TTTTTTTTTTTTTTTTTGAG+TGG - chr5_4:22579964-22579983 None:intergenic 10.0%
!!! TTTTTGGATTTTTTTTTTTT+TGG + chr5_4:22580103-22580122 Msa0844240:intron 10.0%
!! AAGACAAAAAAAAAAAAAAA+AGG - chr5_4:22580501-22580520 None:intergenic 10.0%
!! TTTGAAGATATTTAATATAT+AGG - chr5_4:22580730-22580749 None:intergenic 10.0%
!! TATAGAAGAAGATAAAAAAA+AGG - chr5_4:22578981-22579000 None:intergenic 15.0%
!! AAAAAAAGAGATAAAAACTA+AGG + chr5_4:22579977-22579996 Msa0844240:intron 15.0%
!! AAAAAAGAGATAAAAACTAA+GGG + chr5_4:22579978-22579997 Msa0844240:intron 15.0%
!! TATCTGTTAATCTATTATAA+AGG - chr5_4:22580360-22580379 None:intergenic 15.0%
!!! GAATTTTGAAATAGATATTT+AGG - chr5_4:22580604-22580623 None:intergenic 15.0%
!! TGACAAATTTATTTAATGTA+AGG - chr5_4:22580636-22580655 None:intergenic 15.0%
!! ATTATAGATGAATAATATGT+TGG - chr5_4:22580923-22580942 None:intergenic 15.0%
!!! TTGAATTTTTTTTACTACGA+AGG - chr5_4:22578868-22578887 None:intergenic 20.0%
!! TTCTATATGTCTTATAGTAT+AGG + chr5_4:22578994-22579013 Msa0844240:five_prime_UTR 20.0%
!! TCTATATGTCTTATAGTATA+GGG + chr5_4:22578995-22579014 Msa0844240:five_prime_UTR 20.0%
!! TATTTAGAAAATAGGATATG+AGG + chr5_4:22579608-22579627 Msa0844240:intron 20.0%
!! AATCTAATTCGATTAGATTA+GGG + chr5_4:22579823-22579842 Msa0844240:intron 20.0%
!!! TAACTTTTGATATTATGCTA+AGG + chr5_4:22579926-22579945 Msa0844240:intron 20.0%
!!! AACTTTTGATATTATGCTAA+GGG + chr5_4:22579927-22579946 Msa0844240:intron 20.0%
!! GATATATAAGTGAAAAGAAA+AGG + chr5_4:22580000-22580019 Msa0844240:intron 20.0%
!!! ACGTATTAAACATTAGTTTT+TGG + chr5_4:22580087-22580106 Msa0844240:intron 20.0%
!! TGAAATAGATATTTAGGAAA+TGG - chr5_4:22580598-22580617 None:intergenic 20.0%
!! CACAAATTATTAACAAATTC+AGG + chr5_4:22580674-22580693 Msa0844240:intron 20.0%
!! ATTAAATATCTTCAAATGCT+TGG + chr5_4:22580734-22580753 Msa0844240:intron 20.0%
!! TTAAATATCTTCAAATGCTT+GGG + chr5_4:22580735-22580754 Msa0844240:intron 20.0%
!!! TCATTTGGTAACATTTTTTT+TGG + chr5_4:22580970-22580989 Msa0844240:intron 20.0%
!!! TTTTTTGGTAACATTTTTTC+AGG + chr5_4:22580985-22581004 Msa0844240:intron 20.0%
!!! CTTTTGAACTTATTTTCTTT+GGG - chr5_4:22581249-22581268 None:intergenic 20.0%
!!! TCTTTTGAACTTATTTTCTT+TGG - chr5_4:22581250-22581269 None:intergenic 20.0%
!!! GGTTTTCTCAATATAAAATT+TGG + chr5_4:22581536-22581555 Msa0844240:three_prime_UTR 20.0%
!! TTTTTACTACGAAGGATTAA+GGG - chr5_4:22578860-22578879 None:intergenic 25.0%
!!! TTTTTTACTACGAAGGATTA+AGG - chr5_4:22578861-22578880 None:intergenic 25.0%
! AAAACAAGAGAGAAAATAGA+GGG - chr5_4:22578926-22578945 None:intergenic 25.0%
! TTTATGTCATAGGACTATAT+AGG - chr5_4:22579039-22579058 None:intergenic 25.0%
!!! AAGAGAAAAAGTATTGCATA+TGG + chr5_4:22579070-22579089 Msa0844240:exon 25.0%
!!! GTAGTAGTTATTTCTTTTCA+AGG + chr5_4:22579111-22579130 Msa0844240:CDS 25.0%
!!! TTCAATTTTTGCCACTTATT+AGG + chr5_4:22579437-22579456 Msa0844240:intron 25.0%
!! GTTTAAATCGGTTCAATTAA+AGG + chr5_4:22579797-22579816 Msa0844240:intron 25.0%
! CAATCTAATTCGATTAGATT+AGG + chr5_4:22579822-22579841 Msa0844240:intron 25.0%
! ACTAATGTTTAATACGTGTT+AGG - chr5_4:22580084-22580103 None:intergenic 25.0%
! AAGAAGATCGAATCTAATTA+AGG - chr5_4:22580151-22580170 None:intergenic 25.0%
!!! AGATTTTAAAGTCAGAGTTA+AGG - chr5_4:22580219-22580238 None:intergenic 25.0%
! AAATCTTTATCCTGCTATAT+TGG + chr5_4:22580233-22580252 Msa0844240:intron 25.0%
!!! TAGTTAGCTTTCTTTCTTTT+TGG - chr5_4:22580267-22580286 None:intergenic 25.0%
!!! CTTCAATTGTTTTTAGTTCA+TGG + chr5_4:22580703-22580722 Msa0844240:intron 25.0%
! TAAATATCTTCAAATGCTTG+GGG + chr5_4:22580736-22580755 Msa0844240:intron 25.0%
!! AGCTCACAAAATTTTAAATG+CGG + chr5_4:22580807-22580826 Msa0844240:intron 25.0%
! TTACCAAATGATCTCTTAAA+GGG - chr5_4:22580961-22580980 None:intergenic 25.0%
!!! TTAAGGAAGTTGATTTGTTA+AGG + chr5_4:22581175-22581194 Msa0844240:three_prime_UTR 25.0%
!!! TAAGGAAGTTGATTTGTTAA+GGG + chr5_4:22581176-22581195 Msa0844240:three_prime_UTR 25.0%
! TGAACTTATATTGTGAAGAT+GGG + chr5_4:22581324-22581343 Msa0844240:three_prime_UTR 25.0%
! AGTCCTAAAAAATATGCATA+TGG - chr5_4:22581481-22581500 None:intergenic 25.0%
!!! TTTTTAGGACTATATGTTTG+AGG + chr5_4:22581490-22581509 Msa0844240:three_prime_UTR 25.0%
!!! TTTTAGGACTATATGTTTGA+GGG + chr5_4:22581491-22581510 Msa0844240:three_prime_UTR 25.0%
! GAAAAAAAATATCTTGGCTT+TGG + chr5_4:22581515-22581534 Msa0844240:three_prime_UTR 25.0%
! ATTTTCATGCAATGCAACTA+CGG - chr5_4:22578688-22578707 None:intergenic 30.0%
! TTTTACTACGAAGGATTAAG+GGG - chr5_4:22578859-22578878 None:intergenic 30.0%
GAAAACAAGAGAGAAAATAG+AGG - chr5_4:22578927-22578946 None:intergenic 30.0%
!! TTTCTTTAGAGTACTTGTAG+TGG + chr5_4:22579136-22579155 Msa0844240:CDS 30.0%
!!! GTTTTTAGTAGCTTAGTTAG+TGG + chr5_4:22579179-22579198 Msa0844240:CDS 30.0%
TAAACAAACCTGTTGTGAAT+AGG - chr5_4:22579365-22579384 None:intergenic 30.0%
AGCAATGTATACCTAATAAG+TGG - chr5_4:22579451-22579470 None:intergenic 30.0%
TATGTGACACTCTATATTCT+AGG + chr5_4:22579547-22579566 Msa0844240:intron 30.0%
CTATATTCTAGGTGCAATAT+AGG + chr5_4:22579558-22579577 Msa0844240:intron 30.0%
TAAACTGATTGAACCACAAT+TGG - chr5_4:22579782-22579801 None:intergenic 30.0%
GTGGTTCAATCAGTTTAAAT+CGG + chr5_4:22579785-22579804 Msa0844240:intron 30.0%
GTTAAAAAATCAAACCGAAG+AGG - chr5_4:22579910-22579929 None:intergenic 30.0%
TGTTAGGAAAGGAACATAAT+TGG - chr5_4:22580068-22580087 None:intergenic 30.0%
TGTTTAATACGTGTTAGGAA+AGG - chr5_4:22580079-22580098 None:intergenic 30.0%
GGTATGTGATAAGAATAGAA+AGG - chr5_4:22580130-22580149 None:intergenic 30.0%
AGGACTATCAATGTTAAAAG+AGG - chr5_4:22580340-22580359 None:intergenic 30.0%
GCTTATGAGTAATTAAGAAG+TGG - chr5_4:22580429-22580448 None:intergenic 30.0%
TTCAGAGAGAAAAAATGACA+TGG - chr5_4:22580464-22580483 None:intergenic 30.0%
! AAATTTTAAATGCGGAGAAG+TGG + chr5_4:22580815-22580834 Msa0844240:intron 30.0%
! AATTTTAAATGCGGAGAAGT+GGG + chr5_4:22580816-22580835 Msa0844240:intron 30.0%
AGACATTGCATAATATATGC+GGG - chr5_4:22580866-22580885 None:intergenic 30.0%
GAGACATTGCATAATATATG+CGG - chr5_4:22580867-22580886 None:intergenic 30.0%
! TTTCCCTTTAAGAGATCATT+TGG + chr5_4:22580955-22580974 Msa0844240:intron 30.0%
GTTACCAAATGATCTCTTAA+AGG - chr5_4:22580962-22580981 None:intergenic 30.0%
ATGCAGAAGTTGACAAAAAA+AGG + chr5_4:22581078-22581097 Msa0844240:three_prime_UTR 30.0%
TGCAGAAGTTGACAAAAAAA+GGG + chr5_4:22581079-22581098 Msa0844240:three_prime_UTR 30.0%
TGATTTCATTTACATCCCTA+AGG + chr5_4:22581112-22581131 Msa0844240:three_prime_UTR 30.0%
! CAGAAATTCTAAGAACCTTA+GGG - chr5_4:22581130-22581149 None:intergenic 30.0%
GTGAACTTATATTGTGAAGA+TGG + chr5_4:22581323-22581342 Msa0844240:three_prime_UTR 30.0%
GAACTTATATTGTGAAGATG+GGG + chr5_4:22581325-22581344 Msa0844240:three_prime_UTR 30.0%
!!! CTGCCATATGCATATTTTTT+AGG + chr5_4:22581475-22581494 Msa0844240:three_prime_UTR 30.0%
! TTTAGGACTATATGTTTGAG+GGG + chr5_4:22581492-22581511 Msa0844240:three_prime_UTR 30.0%
TGCTTTATACGGAGCAATAT+AGG - chr5_4:22578738-22578757 None:intergenic 35.0%
TACTTTCTCGAACTAAGAGA+GGG - chr5_4:22578797-22578816 None:intergenic 35.0%
ATACTTTCTCGAACTAAGAG+AGG - chr5_4:22578798-22578817 None:intergenic 35.0%
!! GGTTTTCTTTATAGGTTGGA+GGG - chr5_4:22578829-22578848 None:intergenic 35.0%
!! TGGTTTTCTTTATAGGTTGG+AGG - chr5_4:22578830-22578849 None:intergenic 35.0%
!!! GGTTGGTTTTCTTTATAGGT+TGG - chr5_4:22578833-22578852 None:intergenic 35.0%
!!! GTGTGGTTGGTTTTCTTTAT+AGG - chr5_4:22578837-22578856 None:intergenic 35.0%
AGAGAAGGAAGAGTAGTATA+AGG - chr5_4:22578903-22578922 None:intergenic 35.0%
! TTTAGAGTACTTGTAGTGGT+GGG + chr5_4:22579140-22579159 Msa0844240:CDS 35.0%
TTTAGTAGCTTAGTTAGTGG+TGG + chr5_4:22579182-22579201 Msa0844240:CDS 35.0%
GACAAACAACTACAAGACAT+TGG + chr5_4:22579213-22579232 Msa0844240:CDS 35.0%
CATGATGAACAAGTTGTTGT+TGG + chr5_4:22579254-22579273 Msa0844240:CDS 35.0%
! AGTTGTTGTTGGTAAAGACA+AGG + chr5_4:22579265-22579284 Msa0844240:CDS 35.0%
! GTTGTTGTTGGTAAAGACAA+GGG + chr5_4:22579266-22579285 Msa0844240:CDS 35.0%
AGTAAAAGAAGAGTTCCCAA+TGG + chr5_4:22579332-22579351 Msa0844240:CDS 35.0%
CCAATTGAACCATAACTCAA+AGG - chr5_4:22579648-22579667 None:intergenic 35.0%
! CCTTTGAGTTATGGTTCAAT+TGG + chr5_4:22579645-22579664 Msa0844240:intron 35.0%
! ATGGTTCAATTGGTTTATCG+TGG + chr5_4:22579655-22579674 Msa0844240:intron 35.0%
AAAACCGATTGAACCAATTG+TGG + chr5_4:22579766-22579785 Msa0844240:intron 35.0%
! TGAACCACAATTGGTTCAAT+CGG - chr5_4:22579773-22579792 None:intergenic 35.0%
GATTAGATTAGGGTTCAAAC+AGG + chr5_4:22579833-22579852 Msa0844240:intron 35.0%
TAATTGACCAGTTGTTTGGT+TGG - chr5_4:22579865-22579884 None:intergenic 35.0%
CCAATAATTGACCAGTTGTT+TGG - chr5_4:22579869-22579888 None:intergenic 35.0%
CCAAACAACTGGTCAATTAT+TGG + chr5_4:22579866-22579885 Msa0844240:intron 35.0%
!! ACTAGTTGATTTGACCTCTT+CGG + chr5_4:22579893-22579912 Msa0844240:intron 35.0%
! ATTTTAAATGCGGAGAAGTG+GGG + chr5_4:22580817-22580836 Msa0844240:intron 35.0%
ACATTGCATAATATATGCGG+GGG - chr5_4:22580864-22580883 None:intergenic 35.0%
GACATTGCATAATATATGCG+GGG - chr5_4:22580865-22580884 None:intergenic 35.0%
ATGAATAATATGTTGGTCCC+TGG - chr5_4:22580916-22580935 None:intergenic 35.0%
!!! TAACATTTTTTCAGGAGAGC+TGG + chr5_4:22580993-22581012 Msa0844240:intron 35.0%
! CCAGAAATTCTAAGAACCTT+AGG - chr5_4:22581131-22581150 None:intergenic 35.0%
CCTAAGGTTCTTAGAATTTC+TGG + chr5_4:22581128-22581147 Msa0844240:three_prime_UTR 35.0%
!! AATTTCTGGCTTGTATGCAA+GGG + chr5_4:22581142-22581161 Msa0844240:three_prime_UTR 35.0%
! TTGTTAAGGGAAGAGTTTTG+TGG + chr5_4:22581189-22581208 Msa0844240:three_prime_UTR 35.0%
!! AAGAGTTTTGTGGCCTTAAA+AGG + chr5_4:22581199-22581218 Msa0844240:three_prime_UTR 35.0%
!! AGAGTTTTGTGGCCTTAAAA+GGG + chr5_4:22581200-22581219 Msa0844240:three_prime_UTR 35.0%
! TTTCCTCTTTTCCCCTTTTA+AGG - chr5_4:22581215-22581234 None:intergenic 35.0%
TGGAGAGTCACAAATTTCAA+TGG + chr5_4:22581359-22581378 Msa0844240:three_prime_UTR 35.0%
TTAGGACTATATGTTTGAGG+GGG + chr5_4:22581493-22581512 Msa0844240:three_prime_UTR 35.0%
GAGGGGGAAAAAAAATATCT+TGG + chr5_4:22581509-22581528 Msa0844240:three_prime_UTR 35.0%
TTGCTCCGTATAAAGCAAAG+TGG + chr5_4:22578741-22578760 Msa0844240:five_prime_UTR 40.0%
AGGCACCACTTTGCTTTATA+CGG - chr5_4:22578749-22578768 None:intergenic 40.0%
!! AGAGATTTTTGAGCGTGACA+TGG - chr5_4:22578772-22578791 None:intergenic 40.0%
AGAGAAAATAGAGGGAGAGA+AGG - chr5_4:22578918-22578937 None:intergenic 40.0%
!! CTTTAGAGTACTTGTAGTGG+TGG + chr5_4:22579139-22579158 Msa0844240:CDS 40.0%
! TTAGAGTACTTGTAGTGGTG+GGG + chr5_4:22579141-22579160 Msa0844240:CDS 40.0%
!!! GGTGGGGTTTGTTTGTTTTA+TGG + chr5_4:22579157-22579176 Msa0844240:CDS 40.0%
AACTACAAGACATTGGTCAG+AGG + chr5_4:22579220-22579239 Msa0844240:CDS 40.0%
TGTCAACCATGATGCACAAT+TGG + chr5_4:22579295-22579314 Msa0844240:CDS 40.0%
TGAAGTCCAATTGTGCATCA+TGG - chr5_4:22579304-22579323 None:intergenic 40.0%
TGAATAGGATCTGGTCCATT+GGG - chr5_4:22579350-22579369 None:intergenic 40.0%
AACCTGTTGTGAATAGGATC+TGG - chr5_4:22579359-22579378 None:intergenic 40.0%
! CTCATCTGACCTTTGAGTTA+TGG + chr5_4:22579636-22579655 Msa0844240:intron 40.0%
GATCAAACCAACCAAACAAC+TGG + chr5_4:22579855-22579874 Msa0844240:intron 40.0%
GGTCAAGTTTCCAATATAGC+AGG - chr5_4:22580246-22580265 None:intergenic 40.0%
TTGTCAAGTACCCTAGTAGT+TGG + chr5_4:22580784-22580803 Msa0844240:intron 40.0%
TTTGTGAGCTCCAACTACTA+GGG - chr5_4:22580797-22580816 None:intergenic 40.0%
! TTTTGTGAGCTCCAACTACT+AGG - chr5_4:22580798-22580817 None:intergenic 40.0%
TCAGTTGACTAAGTTTGACC+AGG - chr5_4:22581035-22581054 None:intergenic 40.0%
!! GAATTTCTGGCTTGTATGCA+AGG + chr5_4:22581141-22581160 Msa0844240:three_prime_UTR 40.0%
!! GAGTTTTGTGGCCTTAAAAG+GGG + chr5_4:22581201-22581220 Msa0844240:three_prime_UTR 40.0%
AAGATGGGGTTAGACAGAAA+TGG + chr5_4:22581339-22581358 Msa0844240:three_prime_UTR 40.0%
!! GATTTTTGAGCGTGACATGG+AGG - chr5_4:22578769-22578788 None:intergenic 45.0%
AGTAGCTTAGTTAGTGGTGG+AGG + chr5_4:22579185-22579204 Msa0844240:CDS 45.0%
! TTAGTTAGTGGTGGAGGAAC+AGG + chr5_4:22579191-22579210 Msa0844240:CDS 45.0%
GTGAATAGGATCTGGTCCAT+TGG - chr5_4:22579351-22579370 None:intergenic 45.0%
GACCAGATCCTATTCACAAC+AGG + chr5_4:22579354-22579373 Msa0844240:CDS 45.0%
TACCAATTGAGCCAGCTTCA+CGG + chr5_4:22580887-22580906 Msa0844240:intron 45.0%
TTCAGGAGAGCTGGAAATTC+TGG + chr5_4:22581002-22581021 Msa0844240:intron 45.0%
GTTGACTAAGTTTGACCAGG+AGG - chr5_4:22581032-22581051 None:intergenic 45.0%
GCAAGGGCTAATCACACTTA+AGG + chr5_4:22581158-22581177 Msa0844240:three_prime_UTR 45.0%
! TGGCCTTAAAAGGGGAAAAG+AGG + chr5_4:22581209-22581228 Msa0844240:three_prime_UTR 45.0%
! GAAGGATTAAGGGGTGTGGT+TGG - chr5_4:22578850-22578869 None:intergenic 50.0%
CTACGAAGGATTAAGGGGTG+TGG - chr5_4:22578854-22578873 None:intergenic 50.0%
TGCATAATATATGCGGGGGC+CGG - chr5_4:22580860-22580879 None:intergenic 50.0%
ACCAATTGAGCCAGCTTCAC+GGG + chr5_4:22580888-22580907 Msa0844240:intron 50.0%
GGAAATTCTGGTAGACCTCC+TGG + chr5_4:22581014-22581033 Msa0844240:CDS 50.0%
! ATGCGGAGAAGTGGGGTGTT+CGG + chr5_4:22580824-22580843 Msa0844240:intron 55.0%
CATAATATATGCGGGGGCCG+GGG - chr5_4:22580858-22580877 None:intergenic 55.0%
GCATAATATATGCGGGGGCC+GGG - chr5_4:22580859-22580878 None:intergenic 55.0%
CCAATTGAGCCAGCTTCACG+GGG + chr5_4:22580889-22580908 Msa0844240:intron 55.0%
! TGCGGAGAAGTGGGGTGTTC+GGG + chr5_4:22580825-22580844 Msa0844240:intron 60.0%
! CCCCGTGAAGCTGGCTCAAT+TGG - chr5_4:22580892-22580911 None:intergenic 60.0%
! GCGGAGAAGTGGGGTGTTCG+GGG + chr5_4:22580826-22580845 Msa0844240:intron 65.0%
GGTGTTCGGGGTTCGAACCC+CGG + chr5_4:22580838-22580857 Msa0844240:intron 65.0%
AGCCAGCTTCACGGGGACCA+GGG + chr5_4:22580896-22580915 Msa0844240:intron 65.0%
GAGCCAGCTTCACGGGGACC+AGG + chr5_4:22580895-22580914 Msa0844240:intron 70.0%
GTCCCTGGTCCCCGTGAAGC+TGG - chr5_4:22580901-22580920 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 22578666 22581578 22578666 ID=Msa0844240;Name=Msa0844240
chr5_4 mRNA 22578666 22581578 22578666 ID=Msa0844240-mRNA-1;Parent=Msa0844240;Name=Msa0844240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=423|1|1|1|1|1|2|532|108
chr5_4 exon 22578666 22579375 22578666 ID=Msa0844240-mRNA-1:exon:9201;Parent=Msa0844240-mRNA-1
chr5_4 exon 22581007 22581578 22581007 ID=Msa0844240-mRNA-1:exon:9202;Parent=Msa0844240-mRNA-1
chr5_4 five_prime_UTR 22578666 22579088 22578666 ID=Msa0844240-mRNA-1:five_prime_utr;Parent=Msa0844240-mRNA-1
chr5_4 CDS 22579089 22579375 22579089 ID=Msa0844240-mRNA-1:cds;Parent=Msa0844240-mRNA-1
chr5_4 CDS 22581007 22581046 22581007 ID=Msa0844240-mRNA-1:cds;Parent=Msa0844240-mRNA-1
chr5_4 three_prime_UTR 22581047 22581578 22581047 ID=Msa0844240-mRNA-1:three_prime_utr;Parent=Msa0844240-mRNA-1
Gene Sequence

>Msa0844240

ATGGATACTAATACTAGTAGTAGTAGTAGTTATTTCTTTTCAAGGTTTTTCTTTAGAGTACTTGTAGTGGTGGGGTTTGTTTGTTTTATGGTTTTTAGTAGCTTAGTTAGTGGTGGAGGAACAGGACAAACAACTACAAGACATTGGTCAGAGGAAACACTCAAACATGATGAACAAGTTGTTGTTGGTAAAGACAAGGGTGTTGTTGTCAACCATGATGCACAATTGGACTTCAACTATATGAGTAAAAGAAGAGTTCCCAATGGACCAGATCCTATTCACAACAGGAGAGCTGGAAATTCTGGTAGACCTCCTGGTCAAACTTAG

Protein sequence

>Msa0844240

MDTNTSSSSSYFFSRFFFRVLVVVGFVCFMVFSSLVSGGGTGQTTTRHWSEETLKHDEQVVVGKDKGVVVNHDAQLDFNYMSKRRVPNGPDPIHNRRAGNSGRPPGQT*