Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0590780 | XP_004506639.1 | 49.899 | 493 | 138 | 11 | 1 | 418 | 6 | 464 | 5.38e-138 | 414 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0590780 | A0A1S2YLM9 | 49.899 | 493 | 138 | 11 | 1 | 418 | 6 | 464 | 2.57e-138 | 414 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0227480 | Msa0590780 | 0.814781 | 1.293774e-51 | -8.615850e-47 |
Msa0365500 | Msa0590780 | 0.801548 | 8.549037e-49 | -8.615850e-47 |
Msa0384800 | Msa0590780 | 0.803254 | 3.805764e-49 | -8.615850e-47 |
Msa0414420 | Msa0590780 | 0.821917 | 3.128876e-53 | -8.615850e-47 |
Msa0436780 | Msa0590780 | 0.803695 | 3.084014e-49 | -8.615850e-47 |
Msa0450000 | Msa0590780 | 0.813159 | 2.947118e-51 | -8.615850e-47 |
Msa0452900 | Msa0590780 | 0.833467 | 5.243475e-56 | -8.615850e-47 |
Msa0453120 | Msa0590780 | 0.804267 | 2.344696e-49 | -8.615850e-47 |
Msa0267000 | Msa0590780 | 0.813101 | 3.034839e-51 | -8.615850e-47 |
Msa0267010 | Msa0590780 | 0.814471 | 1.515217e-51 | -8.615850e-47 |
Msa0360510 | Msa0590780 | 0.807891 | 4.049221e-50 | -8.615850e-47 |
Msa0534540 | Msa0590780 | 0.889564 | 2.163284e-73 | -8.615850e-47 |
Msa0590780 | Msa0669310 | 0.900980 | 4.251679e-78 | -8.615850e-47 |
Msa0590780 | Msa0726140 | 0.802532 | 5.365977e-49 | -8.615850e-47 |
Msa0590780 | Msa0783160 | 0.823844 | 1.112570e-53 | -8.615850e-47 |
Msa0590780 | Msa1016280 | 0.825373 | 4.856107e-54 | -8.615850e-47 |
Msa0590780 | Msa1025360 | 0.820376 | 7.087723e-53 | -8.615850e-47 |
Msa0590780 | Msa1025370 | 0.819970 | 8.779579e-53 | -8.615850e-47 |
Msa0590780 | Msa1044830 | 0.822439 | 2.368164e-53 | -8.615850e-47 |
Msa0590780 | Msa1044840 | 0.822263 | 2.600797e-53 | -8.615850e-47 |
Msa0590780 | Msa1109440 | 0.818406 | 1.993356e-52 | -8.615850e-47 |
Msa0590780 | Msa1121200 | 0.804352 | 2.250838e-49 | -8.615850e-47 |
Msa0590780 | Msa1269670 | 0.802646 | 5.083334e-49 | -8.615850e-47 |
Msa0590780 | Msa1270230 | 0.813752 | 2.182602e-51 | -8.615850e-47 |
Msa0590780 | Msa1270240 | 0.802770 | 4.790975e-49 | -8.615850e-47 |
Msa0590780 | Msa1283330 | 0.814765 | 1.304392e-51 | -8.615850e-47 |
Msa0590780 | Msa1285930 | 0.810443 | 1.150025e-50 | -8.615850e-47 |
Msa0590780 | Msa1287800 | 0.813105 | 3.028564e-51 | -8.615850e-47 |
Msa0590780 | Msa1287810 | 0.820269 | 7.499472e-53 | -8.615850e-47 |
Msa0590780 | Msa1404000 | 0.800850 | 1.187428e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0590780 | MtrunA17_Chr4g0008511 | 48.871 | 487 | 140 | 10 | 8 | 418 | 6 | 459 | 5.77e-135 | 396 |
Msa0590780 | MtrunA17_Chr4g0008511 | 26.201 | 229 | 134 | 8 | 6 | 216 | 260 | 471 | 1.47e-11 | 66.2 |
Msa0590780 | MtrunA17_Chr4g0008491 | 58.383 | 334 | 75 | 4 | 87 | 418 | 2 | 273 | 4.84e-110 | 326 |
Msa0590780 | MtrunA17_Chr4g0007341 | 32.981 | 473 | 219 | 16 | 9 | 418 | 12 | 449 | 3.13e-59 | 200 |
Msa0590780 | MtrunA17_Chr4g0007631 | 35.342 | 365 | 186 | 12 | 1 | 349 | 1 | 331 | 1.56e-57 | 197 |
Msa0590780 | MtrunA17_Chr4g0007631 | 27.311 | 238 | 121 | 9 | 10 | 216 | 267 | 483 | 2.34e-13 | 71.6 |
Msa0590780 | MtrunA17_Chr4g0008481 | 35.467 | 375 | 179 | 11 | 1 | 349 | 1 | 338 | 5.05e-56 | 193 |
Msa0590780 | MtrunA17_Chr4g0008481 | 30.131 | 229 | 124 | 9 | 10 | 216 | 274 | 488 | 3.83e-18 | 86.7 |
Msa0590780 | MtrunA17_Chr7g0241261 | 31.486 | 451 | 216 | 12 | 10 | 418 | 9 | 408 | 4.44e-55 | 188 |
Msa0590780 | MtrunA17_Chr1g0166321 | 30.512 | 449 | 247 | 11 | 10 | 418 | 14 | 437 | 3.67e-52 | 182 |
Msa0590780 | MtrunA17_Chr7g0241251 | 30.649 | 447 | 237 | 10 | 10 | 418 | 12 | 423 | 7.92e-52 | 180 |
Msa0590780 | MtrunA17_Chr7g0239911 | 35.083 | 362 | 182 | 8 | 1 | 352 | 1 | 319 | 1.33e-51 | 179 |
Msa0590780 | MtrunA17_Chr4g0007271 | 34.865 | 370 | 148 | 9 | 1 | 349 | 1 | 298 | 6.74e-51 | 178 |
Msa0590780 | MtrunA17_Chr4g0007271 | 25.862 | 232 | 136 | 6 | 9 | 216 | 233 | 452 | 1.88e-16 | 81.3 |
Msa0590780 | MtrunA17_Chr7g0241421 | 35.977 | 353 | 168 | 9 | 13 | 352 | 17 | 324 | 6.84e-51 | 180 |
Msa0590780 | MtrunA17_Chr7g0237451 | 31.978 | 369 | 174 | 9 | 2 | 352 | 4 | 313 | 2.52e-47 | 168 |
Msa0590780 | MtrunA17_Chr7g0239731 | 33.512 | 373 | 198 | 8 | 6 | 371 | 5 | 334 | 1.31e-46 | 166 |
Msa0590780 | MtrunA17_Chr7g0239901 | 34.463 | 354 | 180 | 8 | 8 | 352 | 36 | 346 | 1.71e-46 | 167 |
Msa0590780 | MtrunA17_Chr7g0239891 | 31.211 | 487 | 246 | 14 | 2 | 418 | 3 | 470 | 8.49e-46 | 165 |
Msa0590780 | MtrunA17_Chr7g0238971 | 28.958 | 480 | 230 | 12 | 6 | 418 | 8 | 443 | 3.36e-45 | 162 |
Msa0590780 | MtrunA17_Chr3g0078631 | 31.398 | 465 | 216 | 12 | 3 | 418 | 15 | 425 | 6.47e-44 | 159 |
Msa0590780 | MtrunA17_Chr4g0007251 | 31.006 | 358 | 172 | 7 | 9 | 349 | 13 | 312 | 5.38e-43 | 157 |
Msa0590780 | MtrunA17_Chr4g0007251 | 28.111 | 217 | 118 | 8 | 21 | 216 | 259 | 458 | 2.08e-11 | 65.5 |
Msa0590780 | MtrunA17_Chr7g0239841 | 33.516 | 364 | 177 | 11 | 1 | 347 | 1 | 316 | 8.04e-43 | 155 |
Msa0590780 | MtrunA17_Chr7g0239921 | 28.512 | 484 | 232 | 13 | 2 | 418 | 29 | 465 | 9.80e-43 | 156 |
Msa0590780 | MtrunA17_Chr7g0241201 | 33.702 | 362 | 191 | 8 | 10 | 357 | 15 | 341 | 2.65e-41 | 150 |
Msa0590780 | MtrunA17_Chr7g0238961 | 31.367 | 373 | 203 | 8 | 8 | 359 | 263 | 603 | 5.23e-41 | 154 |
Msa0590780 | MtrunA17_Chr7g0238961 | 41.463 | 123 | 68 | 1 | 1 | 123 | 1 | 119 | 1.14e-22 | 100 |
Msa0590780 | MtrunA17_Chr7g0239851 | 32.240 | 366 | 189 | 11 | 1 | 352 | 1 | 321 | 1.32e-40 | 150 |
Msa0590780 | MtrunA17_Chr7g0241331 | 31.880 | 367 | 192 | 10 | 10 | 357 | 4 | 331 | 2.39e-40 | 150 |
Msa0590780 | MtrunA17_Chr7g0239831 | 34.865 | 370 | 164 | 13 | 1 | 347 | 1 | 316 | 6.57e-40 | 148 |
Msa0590780 | MtrunA17_Chr4g0007231 | 37.339 | 233 | 127 | 10 | 1 | 217 | 1 | 230 | 2.12e-39 | 141 |
Msa0590780 | MtrunA17_Chr7g0241431 | 30.595 | 353 | 153 | 10 | 16 | 347 | 1 | 282 | 3.51e-38 | 143 |
Msa0590780 | MtrunA17_Chr7g0241271 | 31.609 | 348 | 189 | 9 | 13 | 347 | 17 | 328 | 1.11e-34 | 131 |
Msa0590780 | MtrunA17_Chr7g0241161 | 39.548 | 177 | 93 | 5 | 10 | 178 | 15 | 185 | 3.32e-27 | 112 |
Msa0590780 | MtrunA17_Chr7g0241161 | 33.178 | 214 | 104 | 8 | 240 | 416 | 184 | 395 | 7.90e-21 | 94.0 |
Msa0590780 | MtrunA17_Chr2g0291981 | 46.087 | 115 | 58 | 2 | 10 | 124 | 14 | 124 | 5.22e-27 | 105 |
Msa0590780 | MtrunA17_Chr7g0218371 | 42.604 | 169 | 82 | 6 | 10 | 171 | 14 | 174 | 1.96e-26 | 110 |
Msa0590780 | MtrunA17_Chr7g0218371 | 36.641 | 131 | 66 | 3 | 238 | 357 | 168 | 292 | 1.97e-14 | 74.7 |
Msa0590780 | MtrunA17_Chr7g0241311 | 31.878 | 229 | 134 | 8 | 1 | 213 | 1 | 223 | 3.81e-26 | 105 |
Msa0590780 | MtrunA17_Chr7g0241291 | 27.632 | 304 | 150 | 8 | 159 | 418 | 9 | 286 | 8.64e-24 | 101 |
Msa0590780 | MtrunA17_Chr7g0241231 | 40.268 | 149 | 74 | 4 | 10 | 149 | 7 | 149 | 2.24e-23 | 95.5 |
Msa0590780 | MtrunA17_Chr7g0241361 | 30.147 | 272 | 132 | 7 | 10 | 279 | 16 | 231 | 4.00e-23 | 97.8 |
Msa0590780 | MtrunA17_Chr7g0239761 | 29.538 | 325 | 143 | 10 | 1 | 312 | 20 | 271 | 6.36e-23 | 98.2 |
Msa0590780 | MtrunA17_Chr7g0241351 | 32.367 | 207 | 128 | 4 | 10 | 212 | 16 | 214 | 7.59e-23 | 96.3 |
Msa0590780 | MtrunA17_Chr7g0241511 | 26.791 | 321 | 131 | 8 | 161 | 418 | 17 | 296 | 5.94e-22 | 96.7 |
Msa0590780 | MtrunA17_Chr7g0239751 | 33.040 | 227 | 111 | 6 | 8 | 218 | 30 | 231 | 1.06e-21 | 93.2 |
Msa0590780 | MtrunA17_Chr4g0007321 | 29.730 | 259 | 99 | 7 | 236 | 418 | 7 | 258 | 2.88e-20 | 90.5 |
Msa0590780 | MtrunA17_Chr4g0007321 | 29.870 | 231 | 116 | 9 | 10 | 216 | 61 | 269 | 3.27e-17 | 81.6 |
Msa0590780 | MtrunA17_Chr7g0241211 | 32.919 | 161 | 79 | 3 | 286 | 418 | 1 | 160 | 1.60e-17 | 80.5 |
Msa0590780 | MtrunA17_Chr7g0239861 | 30.435 | 276 | 135 | 10 | 91 | 358 | 26 | 252 | 1.96e-17 | 83.6 |
Msa0590780 | MtrunA17_Chr1g0212741 | 28.384 | 229 | 132 | 8 | 2 | 210 | 3 | 219 | 3.91e-16 | 77.4 |
Msa0590780 | MtrunA17_Chr7g0237481 | 50.746 | 67 | 33 | 0 | 286 | 352 | 15 | 81 | 2.26e-15 | 73.9 |
Msa0590780 | MtrunA17_Chr7g0229201 | 29.565 | 230 | 130 | 8 | 1 | 210 | 1 | 218 | 9.63e-15 | 73.6 |
Msa0590780 | MtrunA17_Chr0c02g0489781 | 29.565 | 230 | 130 | 8 | 1 | 210 | 1 | 218 | 9.63e-15 | 73.6 |
Msa0590780 | MtrunA17_Chr1g0150211 | 45.946 | 74 | 38 | 1 | 286 | 357 | 1 | 74 | 4.65e-14 | 69.3 |
Msa0590780 | MtrunA17_Chr8g0355351 | 26.906 | 223 | 132 | 6 | 10 | 216 | 13 | 220 | 5.64e-14 | 71.2 |
Msa0590780 | MtrunA17_Chr7g0241181 | 43.011 | 93 | 53 | 0 | 288 | 380 | 17 | 109 | 2.81e-13 | 66.2 |
Msa0590780 | MtrunA17_Chr4g0007221 | 29.348 | 184 | 76 | 4 | 286 | 418 | 10 | 190 | 3.20e-13 | 68.9 |
Msa0590780 | MtrunA17_Chr1g0212761 | 30.872 | 149 | 79 | 5 | 10 | 151 | 7 | 138 | 6.32e-13 | 65.9 |
Msa0590780 | MtrunA17_Chr7g0241301 | 31.034 | 116 | 52 | 2 | 10 | 123 | 12 | 101 | 1.10e-12 | 64.7 |
Msa0590780 | MtrunA17_Chr7g0239791 | 34.615 | 130 | 77 | 3 | 224 | 347 | 3 | 130 | 7.78e-12 | 65.5 |
Msa0590780 | MtrunA17_Chr7g0263461 | 54.902 | 51 | 23 | 0 | 8 | 58 | 37 | 87 | 9.82e-12 | 60.8 |
Msa0590780 | MtrunA17_Chr4g0007311 | 31.646 | 158 | 87 | 7 | 93 | 245 | 1 | 142 | 1.20e-11 | 62.4 |
Msa0590780 | MtrunA17_Chr1g0212771 | 27.551 | 196 | 102 | 6 | 10 | 175 | 9 | 194 | 2.12e-11 | 63.2 |
Msa0590780 | MtrunA17_Chr7g0229211 | 38.202 | 89 | 45 | 2 | 10 | 97 | 8 | 87 | 3.56e-11 | 63.5 |
Msa0590780 | MtrunA17_Chr1g0212781 | 35.106 | 94 | 52 | 1 | 10 | 103 | 6 | 90 | 6.60e-11 | 63.9 |
Msa0590780 | MtrunA17_Chr8g0345251 | 30.000 | 160 | 105 | 3 | 238 | 391 | 110 | 268 | 9.51e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0590780 | AT3G09110.1 | 34.195 | 348 | 182 | 7 | 10 | 347 | 9 | 319 | 5.76e-50 | 172 |
Msa0590780 | AT5G01120.1 | 34.384 | 349 | 182 | 6 | 13 | 346 | 12 | 328 | 1.15e-49 | 176 |
Msa0590780 | AT3G09140.1 | 31.301 | 492 | 248 | 14 | 9 | 418 | 8 | 491 | 1.39e-46 | 168 |
Msa0590780 | AT3G09120.1 | 32.849 | 344 | 183 | 6 | 9 | 339 | 5 | 313 | 3.75e-45 | 159 |
Msa0590780 | AT3G09140.2 | 30.346 | 491 | 226 | 14 | 9 | 418 | 8 | 463 | 6.52e-45 | 163 |
Msa0590780 | AT5G01150.1 | 33.711 | 353 | 187 | 11 | 8 | 347 | 7 | 325 | 1.34e-43 | 159 |
Msa0590780 | AT5G01130.1 | 31.448 | 442 | 232 | 12 | 8 | 415 | 7 | 411 | 5.60e-41 | 151 |
Msa0590780 | AT5G01140.1 | 28.602 | 465 | 222 | 11 | 8 | 415 | 7 | 418 | 1.82e-39 | 147 |
Msa0590780 | AT5G43240.1 | 33.428 | 353 | 187 | 8 | 11 | 347 | 10 | 330 | 3.83e-37 | 142 |
Msa0590780 | AT5G43240.3 | 33.428 | 353 | 187 | 8 | 11 | 347 | 10 | 330 | 3.83e-37 | 142 |
Msa0590780 | AT5G43240.4 | 33.428 | 353 | 187 | 8 | 11 | 347 | 10 | 330 | 3.83e-37 | 142 |
Msa0590780 | AT5G37320.1 | 26.652 | 469 | 228 | 20 | 20 | 414 | 19 | 445 | 3.27e-28 | 116 |
Find 70 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGTGTTTAGTATTTATTC+TGG | 0.088819 | 4_2:-14490449 | Msa0590780:CDS |
CATGGTGGATTTATTCAAAT+TGG | 0.222313 | 4_2:-14490138 | Msa0590780:intron |
CAATATACCATTGGATGATT+TGG | 0.259092 | 4_2:-14488551 | Msa0590780:CDS |
GATTTGTTGTGAGAAATTTA+TGG | 0.293308 | 4_2:-14490423 | Msa0590780:CDS |
TCCTCTGAGTGATGTATTCT+TGG | 0.319063 | 4_2:-14489016 | Msa0590780:CDS |
GTGTGTTTAGTATTTATTCT+GGG | 0.332688 | 4_2:-14490448 | Msa0590780:CDS |
AATCATCCACATTCAACTTC+AGG | 0.334699 | 4_2:+14490513 | None:intergenic |
AAAGTGCTTCAAAGCTTTCC+TGG | 0.336987 | 4_2:-14490308 | Msa0590780:CDS |
AAAACTACCATTGACACTTT+TGG | 0.338647 | 4_2:-14490807 | Msa0590780:CDS |
GTGTGGAAAATTTCAGTGAT+AGG | 0.349892 | 4_2:-14490607 | Msa0590780:CDS |
TTGTGAGAAATTTATGGTTC+AGG | 0.367812 | 4_2:-14490417 | Msa0590780:CDS |
CCACATTCAACTTCAGGTTC+TGG | 0.377519 | 4_2:+14490519 | None:intergenic |
TTCCATTAGGAACCATCATT+AGG | 0.393853 | 4_2:-14490706 | Msa0590780:CDS |
ATAATAATGTGGAGGTCTTA+AGG | 0.398414 | 4_2:+14488960 | None:intergenic |
AATGTGCATCATAGAGGTTT+TGG | 0.399001 | 4_2:-14490389 | Msa0590780:CDS |
CCAATTGTTTCTTCTTGTGA+TGG | 0.399719 | 4_2:+14490653 | None:intergenic |
TTAAGGAGAAAGGGTACAAT+AGG | 0.401192 | 4_2:+14488977 | None:intergenic |
ATTTACTTACTGTTACCTTA+AGG | 0.401448 | 4_2:+14488911 | None:intergenic |
TCAATCCTTCATGTTTCATA+AGG | 0.411494 | 4_2:-14488735 | Msa0590780:CDS |
ATCCTAATGATGGTTCCTAA+TGG | 0.418326 | 4_2:+14490704 | None:intergenic |
CTTACAAGTGAAGTACTTTG+TGG | 0.426269 | 4_2:+14490484 | None:intergenic |
TTTGAGGCAAAATCTCCATA+TGG | 0.437503 | 4_2:-14488691 | Msa0590780:CDS |
TGTTTCTGTAACCAAGTTGT+TGG | 0.453923 | 4_2:+14490267 | None:intergenic |
TTGTCTACCAAAAGTGTCAA+TGG | 0.460192 | 4_2:+14490800 | None:intergenic |
ACTTCACTTGTAAGATCTGC+GGG | 0.463855 | 4_2:-14490475 | Msa0590780:CDS |
CAACTTCAGGTTCTGGCAAA+GGG | 0.465388 | 4_2:+14490526 | None:intergenic |
TGCTCTAGAACTGATCCAAC+AGG | 0.472921 | 4_2:+14488817 | None:intergenic |
CTTAGACACAATCCTAATGA+TGG | 0.477121 | 4_2:+14490694 | None:intergenic |
TACTACTATTATGAACCTTA+AGG | 0.477721 | 4_2:-14488926 | Msa0590780:CDS |
CTTCAGCAACTCCAACAACT+TGG | 0.486952 | 4_2:-14490278 | Msa0590780:CDS |
TGTGGAGGTCTTAAGGAGAA+AGG | 0.491558 | 4_2:+14488967 | None:intergenic |
CCATCACAAGAAGAAACAAT+TGG | 0.491894 | 4_2:-14490653 | Msa0590780:CDS |
AAGTGCTTCAAAGCTTTCCT+GGG | 0.495084 | 4_2:-14490307 | Msa0590780:CDS |
TTACAAGTGAAGTACTTTGT+GGG | 0.496614 | 4_2:+14490485 | None:intergenic |
GCAAAAGCTCAATATACCAT+TGG | 0.497905 | 4_2:-14488560 | Msa0590780:CDS |
AGTTTCCTCACAACTCCTGT+TGG | 0.502430 | 4_2:-14488832 | Msa0590780:CDS |
AAAGGCCTTATGAAACATGA+AGG | 0.503766 | 4_2:+14488730 | None:intergenic |
GTGGAGGTCTTAAGGAGAAA+GGG | 0.503814 | 4_2:+14488968 | None:intergenic |
TACATCACTCAGAGGAGACT+TGG | 0.505743 | 4_2:+14489023 | None:intergenic |
AGTGATGTATTCTTGGCAAA+TGG | 0.508041 | 4_2:-14489009 | Msa0590780:CDS |
GCCATCACAATTTGTTGTGT+GGG | 0.513624 | 4_2:-14488635 | Msa0590780:CDS |
ATCTTTGAAATATATATGCA+TGG | 0.517526 | 4_2:-14490156 | Msa0590780:CDS |
TGTGTTTAGTATTTATTCTG+GGG | 0.523933 | 4_2:-14490447 | Msa0590780:CDS |
TCAACTTCAGGTTCTGGCAA+AGG | 0.534593 | 4_2:+14490525 | None:intergenic |
ATCACTCAGAGGAGACTTGG+AGG | 0.535183 | 4_2:+14489026 | None:intergenic |
GGCCATCACAATTTGTTGTG+TGG | 0.538348 | 4_2:-14488636 | Msa0590780:CDS |
ACTTGTAAGATCTGCGGGGA+GGG | 0.550642 | 4_2:-14490470 | Msa0590780:CDS |
AAGAAATCTTTACAAGAGTG+TGG | 0.573379 | 4_2:-14490624 | Msa0590780:CDS |
TAATCTTCAAGTGACACCAT+TGG | 0.576349 | 4_2:-14488611 | Msa0590780:CDS |
TCAGTTCTAGAGCAATTGAA+TGG | 0.578611 | 4_2:-14488808 | Msa0590780:CDS |
CTACTCTAGGCATTGTGAAG+AGG | 0.587210 | 4_2:-14488657 | Msa0590780:CDS |
AGTTGCTGAAGAGTGTTCCC+AGG | 0.589986 | 4_2:+14490290 | None:intergenic |
ATAGAAATGCATGTCACTGT+TGG | 0.599207 | 4_2:-14490233 | Msa0590780:CDS |
TACTTCACTTGTAAGATCTG+CGG | 0.605598 | 4_2:-14490476 | Msa0590780:CDS |
CTAGAAATATTATCATCCAA+TGG | 0.607733 | 4_2:+14488595 | None:intergenic |
TCCCACACAACAAATTGTGA+TGG | 0.608209 | 4_2:+14488634 | None:intergenic |
TGCTGCTCCAAATCATCCAA+TGG | 0.608213 | 4_2:+14488544 | None:intergenic |
TGTCACTGTTGGTTTGAAAG+AGG | 0.609598 | 4_2:-14490222 | Msa0590780:CDS |
CCAGAACCTGAAGTTGAATG+TGG | 0.612148 | 4_2:-14490519 | Msa0590780:CDS |
GCAGTAGCATCATAATAATG+TGG | 0.620233 | 4_2:+14488949 | None:intergenic |
CACTTGTAAGATCTGCGGGG+AGG | 0.626069 | 4_2:-14490471 | Msa0590780:CDS |
GTAGAGAATGTGCATCATAG+AGG | 0.634323 | 4_2:-14490395 | Msa0590780:CDS |
TTGTTTCAGCTAAAACTACA+CGG | 0.647766 | 4_2:+14490768 | None:intergenic |
CTGATCCAACAGGAGTTGTG+AGG | 0.651492 | 4_2:+14488827 | None:intergenic |
TTTGAAATATATATGCATGG+TGG | 0.655547 | 4_2:-14490153 | Msa0590780:CDS |
GTAGCATCATAATAATGTGG+AGG | 0.668124 | 4_2:+14488952 | None:intergenic |
AGGGACTCACAATTGTTGTG+TGG | 0.671588 | 4_2:+14490545 | None:intergenic |
GGATGATTTGGAGCAGCATG+TGG | 0.676783 | 4_2:-14488539 | None:intergenic |
GCCAAGAATACATCACTCAG+AGG | 0.700298 | 4_2:+14489015 | None:intergenic |
CTTCACTTGTAAGATCTGCG+GGG | 0.756229 | 4_2:-14490474 | Msa0590780:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAATTGTTATAATTAAATTA+AGG | + | chr4_2:14490238-14490257 | None:intergenic | 10.0% |
!! | GAATTGTTATAATTAAATTA+AGG | + | chr4_2:14490238-14490257 | None:intergenic | 10.0% |
!!! | CTGTTTATATTTTTAGATTT+TGG | - | chr4_2:14490303-14490322 | Msa0590780:CDS | 15.0% |
!!! | CTGTTTATATTTTTAGATTT+TGG | - | chr4_2:14490303-14490322 | Msa0590780:CDS | 15.0% |
!!! | ATCTTTGAAATATATATGCA+TGG | - | chr4_2:14489217-14489236 | Msa0590780:intron | 20.0% |
!!! | AAAGAAAACAAGTTTTGAAA+TGG | - | chr4_2:14489267-14489286 | Msa0590780:intron | 20.0% |
!!! | GAAAAGTATTTGAAACTTTT+AGG | - | chr4_2:14489289-14489308 | Msa0590780:intron | 20.0% |
!! | AGATATTTCAAAAATCCTTT+AGG | + | chr4_2:14489554-14489573 | None:intergenic | 20.0% |
!! | CACTTATAAATCGATAAATA+TGG | + | chr4_2:14489770-14489789 | None:intergenic | 20.0% |
!! | ATTACATCCAATAAAAAAGT+GGG | - | chr4_2:14489929-14489948 | Msa0590780:intron | 20.0% |
!! | TAATTAAATTAAGGTGCAAA+AGG | + | chr4_2:14490229-14490248 | None:intergenic | 20.0% |
!!! | AAAAGATTCATGTCTTTTAA+AGG | + | chr4_2:14490664-14490683 | None:intergenic | 20.0% |
!!! | ATCTTTGAAATATATATGCA+TGG | - | chr4_2:14489217-14489236 | Msa0590780:intron | 20.0% |
!!! | AAAGAAAACAAGTTTTGAAA+TGG | - | chr4_2:14489267-14489286 | Msa0590780:intron | 20.0% |
!!! | GAAAAGTATTTGAAACTTTT+AGG | - | chr4_2:14489289-14489308 | Msa0590780:intron | 20.0% |
!! | AGATATTTCAAAAATCCTTT+AGG | + | chr4_2:14489554-14489573 | None:intergenic | 20.0% |
!! | CACTTATAAATCGATAAATA+TGG | + | chr4_2:14489770-14489789 | None:intergenic | 20.0% |
!! | ATTACATCCAATAAAAAAGT+GGG | - | chr4_2:14489929-14489948 | Msa0590780:intron | 20.0% |
!! | TAATTAAATTAAGGTGCAAA+AGG | + | chr4_2:14490229-14490248 | None:intergenic | 20.0% |
!!! | AAAAGATTCATGTCTTTTAA+AGG | + | chr4_2:14490664-14490683 | None:intergenic | 20.0% |
!! | TTTTCTTTCATATTTGTGCA+CGG | + | chr4_2:14488550-14488569 | None:intergenic | 25.0% |
! | GTGTGTTTAGTATTTATTCT+GGG | - | chr4_2:14488925-14488944 | Msa0590780:CDS | 25.0% |
! | TGTGTTTAGTATTTATTCTG+GGG | - | chr4_2:14488926-14488945 | Msa0590780:CDS | 25.0% |
!!! | GATTTGTTGTGAGAAATTTA+TGG | - | chr4_2:14488950-14488969 | Msa0590780:CDS | 25.0% |
!! | TTTGAAATATATATGCATGG+TGG | - | chr4_2:14489220-14489239 | Msa0590780:intron | 25.0% |
! | TTAAAATACAATCACCATTG+TGG | + | chr4_2:14489634-14489653 | None:intergenic | 25.0% |
! | GATTACATCCAATAAAAAAG+TGG | - | chr4_2:14489928-14489947 | Msa0590780:intron | 25.0% |
!!! | TTTAACACCCACTTTTTTAT+TGG | + | chr4_2:14489939-14489958 | None:intergenic | 25.0% |
! | ATATTGCATGTTATATGCAT+GGG | + | chr4_2:14490099-14490118 | None:intergenic | 25.0% |
! | TACTACTATTATGAACCTTA+AGG | - | chr4_2:14490447-14490466 | Msa0590780:CDS | 25.0% |
! | ATTTACTTACTGTTACCTTA+AGG | + | chr4_2:14490465-14490484 | None:intergenic | 25.0% |
!!! | TTGAATGGCATTTTTTCTTT+TGG | - | chr4_2:14490580-14490599 | Msa0590780:CDS | 25.0% |
!! | AAAAGACATGAATCTTTTTG+AGG | - | chr4_2:14490666-14490685 | Msa0590780:CDS | 25.0% |
!!! | GTAGATTCTATTTTTCCATA+TGG | + | chr4_2:14490700-14490719 | None:intergenic | 25.0% |
! | CTAGAAATATTATCATCCAA+TGG | + | chr4_2:14490781-14490800 | None:intergenic | 25.0% |
!! | TTTTCTTTCATATTTGTGCA+CGG | + | chr4_2:14488550-14488569 | None:intergenic | 25.0% |
! | GTGTGTTTAGTATTTATTCT+GGG | - | chr4_2:14488925-14488944 | Msa0590780:CDS | 25.0% |
! | TGTGTTTAGTATTTATTCTG+GGG | - | chr4_2:14488926-14488945 | Msa0590780:CDS | 25.0% |
!!! | GATTTGTTGTGAGAAATTTA+TGG | - | chr4_2:14488950-14488969 | Msa0590780:CDS | 25.0% |
!! | TTTGAAATATATATGCATGG+TGG | - | chr4_2:14489220-14489239 | Msa0590780:intron | 25.0% |
! | TTAAAATACAATCACCATTG+TGG | + | chr4_2:14489634-14489653 | None:intergenic | 25.0% |
! | GATTACATCCAATAAAAAAG+TGG | - | chr4_2:14489928-14489947 | Msa0590780:intron | 25.0% |
!!! | TTTAACACCCACTTTTTTAT+TGG | + | chr4_2:14489939-14489958 | None:intergenic | 25.0% |
! | ATATTGCATGTTATATGCAT+GGG | + | chr4_2:14490099-14490118 | None:intergenic | 25.0% |
! | TACTACTATTATGAACCTTA+AGG | - | chr4_2:14490447-14490466 | Msa0590780:CDS | 25.0% |
! | ATTTACTTACTGTTACCTTA+AGG | + | chr4_2:14490465-14490484 | None:intergenic | 25.0% |
!!! | TTGAATGGCATTTTTTCTTT+TGG | - | chr4_2:14490580-14490599 | Msa0590780:CDS | 25.0% |
!! | AAAAGACATGAATCTTTTTG+AGG | - | chr4_2:14490666-14490685 | Msa0590780:CDS | 25.0% |
!!! | GTAGATTCTATTTTTCCATA+TGG | + | chr4_2:14490700-14490719 | None:intergenic | 25.0% |
! | CTAGAAATATTATCATCCAA+TGG | + | chr4_2:14490781-14490800 | None:intergenic | 25.0% |
! | AAAACTACCATTGACACTTT+TGG | - | chr4_2:14488566-14488585 | Msa0590780:CDS | 30.0% |
TTGTTTCAGCTAAAACTACA+CGG | + | chr4_2:14488608-14488627 | None:intergenic | 30.0% | |
! | GACATCGTTGATATTTTGTT+TGG | - | chr4_2:14488633-14488652 | Msa0590780:CDS | 30.0% |
AAGAAATCTTTACAAGAGTG+TGG | - | chr4_2:14488749-14488768 | Msa0590780:CDS | 30.0% | |
! | TTACAAGTGAAGTACTTTGT+GGG | + | chr4_2:14488891-14488910 | None:intergenic | 30.0% |
GGTGTGTTTAGTATTTATTC+TGG | - | chr4_2:14488924-14488943 | Msa0590780:CDS | 30.0% | |
TTGTGAGAAATTTATGGTTC+AGG | - | chr4_2:14488956-14488975 | Msa0590780:CDS | 30.0% | |
!! | CATGGTGGATTTATTCAAAT+TGG | - | chr4_2:14489235-14489254 | Msa0590780:intron | 30.0% |
ACATTTCTTAATTGCAGTTG+TGG | - | chr4_2:14489320-14489339 | Msa0590780:intron | 30.0% | |
! | AGCTTTTATAATACCATTGC+GGG | + | chr4_2:14489373-14489392 | None:intergenic | 30.0% |
! | CAGCTTTTATAATACCATTG+CGG | + | chr4_2:14489374-14489393 | None:intergenic | 30.0% |
AAAAACCATTTATGTTCCAC+CGG | + | chr4_2:14489439-14489458 | None:intergenic | 30.0% | |
! | TTTGAAATCTATGCATGCAA+TGG | - | chr4_2:14489456-14489475 | Msa0590780:intron | 30.0% |
ATGTAGGCAAATACAATTGA+TGG | + | chr4_2:14489501-14489520 | None:intergenic | 30.0% | |
! | TCAAAAATCCTTTAGGTTCT+GGG | + | chr4_2:14489547-14489566 | None:intergenic | 30.0% |
! | TTCAAAAATCCTTTAGGTTC+TGG | + | chr4_2:14489548-14489567 | None:intergenic | 30.0% |
TTCCTTCATATTAACCACAA+TGG | - | chr4_2:14489617-14489636 | Msa0590780:intron | 30.0% | |
!! | CATTACTATTGTTTTGCCTA+TGG | + | chr4_2:14489670-14489689 | None:intergenic | 30.0% |
!!! | AGAGAATTAGTTTTAGAGAG+TGG | + | chr4_2:14489839-14489858 | None:intergenic | 30.0% |
AAAGTGGGTGTTAAAAAAAG+AGG | - | chr4_2:14489944-14489963 | Msa0590780:intron | 30.0% | |
AAGTGGGTGTTAAAAAAAGA+GGG | - | chr4_2:14489945-14489964 | Msa0590780:intron | 30.0% | |
! | TAGACAGTCTTATAATACTC+CGG | + | chr4_2:14489986-14490005 | None:intergenic | 30.0% |
!!! | TTTTTTTTTGTCAAGTAGCC+TGG | - | chr4_2:14490016-14490035 | Msa0590780:intron | 30.0% |
CTATAGCTCACAATTAAATG+TGG | - | chr4_2:14490042-14490061 | Msa0590780:intron | 30.0% | |
ACAATTAAATGTGGAGAAGT+GGG | - | chr4_2:14490051-14490070 | Msa0590780:intron | 30.0% | |
GATATTGCATGTTATATGCA+TGG | + | chr4_2:14490100-14490119 | None:intergenic | 30.0% | |
TAAATTAAGGTGCAAAAGGA+AGG | + | chr4_2:14490225-14490244 | None:intergenic | 30.0% | |
ATAATAATGTGGAGGTCTTA+AGG | + | chr4_2:14490416-14490435 | None:intergenic | 30.0% | |
TCAATCCTTCATGTTTCATA+AGG | - | chr4_2:14490638-14490657 | Msa0590780:CDS | 30.0% | |
GGAAAAATAGAATCTACTCT+AGG | - | chr4_2:14490703-14490722 | Msa0590780:CDS | 30.0% | |
CAATATACCATTGGATGATT+TGG | - | chr4_2:14490822-14490841 | Msa0590780:CDS | 30.0% | |
! | AAAACTACCATTGACACTTT+TGG | - | chr4_2:14488566-14488585 | Msa0590780:CDS | 30.0% |
TTGTTTCAGCTAAAACTACA+CGG | + | chr4_2:14488608-14488627 | None:intergenic | 30.0% | |
! | GACATCGTTGATATTTTGTT+TGG | - | chr4_2:14488633-14488652 | Msa0590780:CDS | 30.0% |
AAGAAATCTTTACAAGAGTG+TGG | - | chr4_2:14488749-14488768 | Msa0590780:CDS | 30.0% | |
! | TTACAAGTGAAGTACTTTGT+GGG | + | chr4_2:14488891-14488910 | None:intergenic | 30.0% |
GGTGTGTTTAGTATTTATTC+TGG | - | chr4_2:14488924-14488943 | Msa0590780:CDS | 30.0% | |
TTGTGAGAAATTTATGGTTC+AGG | - | chr4_2:14488956-14488975 | Msa0590780:CDS | 30.0% | |
!! | CATGGTGGATTTATTCAAAT+TGG | - | chr4_2:14489235-14489254 | Msa0590780:intron | 30.0% |
ACATTTCTTAATTGCAGTTG+TGG | - | chr4_2:14489320-14489339 | Msa0590780:intron | 30.0% | |
! | AGCTTTTATAATACCATTGC+GGG | + | chr4_2:14489373-14489392 | None:intergenic | 30.0% |
! | CAGCTTTTATAATACCATTG+CGG | + | chr4_2:14489374-14489393 | None:intergenic | 30.0% |
AAAAACCATTTATGTTCCAC+CGG | + | chr4_2:14489439-14489458 | None:intergenic | 30.0% | |
! | TTTGAAATCTATGCATGCAA+TGG | - | chr4_2:14489456-14489475 | Msa0590780:intron | 30.0% |
ATGTAGGCAAATACAATTGA+TGG | + | chr4_2:14489501-14489520 | None:intergenic | 30.0% | |
! | TCAAAAATCCTTTAGGTTCT+GGG | + | chr4_2:14489547-14489566 | None:intergenic | 30.0% |
! | TTCAAAAATCCTTTAGGTTC+TGG | + | chr4_2:14489548-14489567 | None:intergenic | 30.0% |
TTCCTTCATATTAACCACAA+TGG | - | chr4_2:14489617-14489636 | Msa0590780:intron | 30.0% | |
!! | CATTACTATTGTTTTGCCTA+TGG | + | chr4_2:14489670-14489689 | None:intergenic | 30.0% |
!!! | AGAGAATTAGTTTTAGAGAG+TGG | + | chr4_2:14489839-14489858 | None:intergenic | 30.0% |
AAAGTGGGTGTTAAAAAAAG+AGG | - | chr4_2:14489944-14489963 | Msa0590780:intron | 30.0% | |
AAGTGGGTGTTAAAAAAAGA+GGG | - | chr4_2:14489945-14489964 | Msa0590780:intron | 30.0% | |
! | TAGACAGTCTTATAATACTC+CGG | + | chr4_2:14489986-14490005 | None:intergenic | 30.0% |
!!! | TTTTTTTTTGTCAAGTAGCC+TGG | - | chr4_2:14490016-14490035 | Msa0590780:intron | 30.0% |
CTATAGCTCACAATTAAATG+TGG | - | chr4_2:14490042-14490061 | Msa0590780:intron | 30.0% | |
ACAATTAAATGTGGAGAAGT+GGG | - | chr4_2:14490051-14490070 | Msa0590780:intron | 30.0% | |
GATATTGCATGTTATATGCA+TGG | + | chr4_2:14490100-14490119 | None:intergenic | 30.0% | |
TAAATTAAGGTGCAAAAGGA+AGG | + | chr4_2:14490225-14490244 | None:intergenic | 30.0% | |
ATAATAATGTGGAGGTCTTA+AGG | + | chr4_2:14490416-14490435 | None:intergenic | 30.0% | |
TCAATCCTTCATGTTTCATA+AGG | - | chr4_2:14490638-14490657 | Msa0590780:CDS | 30.0% | |
GGAAAAATAGAATCTACTCT+AGG | - | chr4_2:14490703-14490722 | Msa0590780:CDS | 30.0% | |
CAATATACCATTGGATGATT+TGG | - | chr4_2:14490822-14490841 | Msa0590780:CDS | 30.0% | |
!! | TTGTCTACCAAAAGTGTCAA+TGG | + | chr4_2:14488576-14488595 | None:intergenic | 35.0% |
!!! | GTAGTTTTAGCTGAAACAAG+TGG | - | chr4_2:14488609-14488628 | Msa0590780:CDS | 35.0% |
TTCCATTAGGAACCATCATT+AGG | - | chr4_2:14488667-14488686 | Msa0590780:CDS | 35.0% | |
ATCCTAATGATGGTTCCTAA+TGG | + | chr4_2:14488672-14488691 | None:intergenic | 35.0% | |
CTTAGACACAATCCTAATGA+TGG | + | chr4_2:14488682-14488701 | None:intergenic | 35.0% | |
! | CCAATTGTTTCTTCTTGTGA+TGG | + | chr4_2:14488723-14488742 | None:intergenic | 35.0% |
CCATCACAAGAAGAAACAAT+TGG | - | chr4_2:14488720-14488739 | Msa0590780:CDS | 35.0% | |
GTGTGGAAAATTTCAGTGAT+AGG | - | chr4_2:14488766-14488785 | Msa0590780:CDS | 35.0% | |
! | TTTTCGTCATAGTGAATGCA+AGG | - | chr4_2:14488791-14488810 | Msa0590780:CDS | 35.0% |
AATCATCCACATTCAACTTC+AGG | + | chr4_2:14488863-14488882 | None:intergenic | 35.0% | |
! | CTTACAAGTGAAGTACTTTG+TGG | + | chr4_2:14488892-14488911 | None:intergenic | 35.0% |
TACTTCACTTGTAAGATCTG+CGG | - | chr4_2:14488897-14488916 | Msa0590780:CDS | 35.0% | |
! | AATGTGCATCATAGAGGTTT+TGG | - | chr4_2:14488984-14489003 | Msa0590780:CDS | 35.0% |
!!! | TGAAGCTGGTTTTGTTAAGA+AGG | - | chr4_2:14489013-14489032 | Msa0590780:CDS | 35.0% |
!!! | GAAGCTGGTTTTGTTAAGAA+GGG | - | chr4_2:14489014-14489033 | Msa0590780:CDS | 35.0% |
! | TGTTTCTGTAACCAAGTTGT+TGG | + | chr4_2:14489109-14489128 | None:intergenic | 35.0% |
ATAGAAATGCATGTCACTGT+TGG | - | chr4_2:14489140-14489159 | Msa0590780:intron | 35.0% | |
! | GCTTTTATAATACCATTGCG+GGG | + | chr4_2:14489372-14489391 | None:intergenic | 35.0% |
! | TGTATTCGCTTGCATTTTGA+CGG | - | chr4_2:14489401-14489420 | Msa0590780:intron | 35.0% |
TGACATTACAATCGCAATTG+CGG | - | chr4_2:14489578-14489597 | Msa0590780:intron | 35.0% | |
CACCATTGTGGTTAATATGA+AGG | + | chr4_2:14489622-14489641 | None:intergenic | 35.0% | |
TGTGCAAGAGAAATGTAACT+TGG | - | chr4_2:14489697-14489716 | Msa0590780:intron | 35.0% | |
CAGTACAAGAGTCAATGAAA+CGG | - | chr4_2:14489812-14489831 | Msa0590780:intron | 35.0% | |
AGGGTTCTTATTATTGTGAC+CGG | - | chr4_2:14489964-14489983 | Msa0590780:intron | 35.0% | |
CACAATTAAATGTGGAGAAG+TGG | - | chr4_2:14490050-14490069 | Msa0590780:intron | 35.0% | |
CAATTAAATGTGGAGAAGTG+GGG | - | chr4_2:14490052-14490071 | Msa0590780:intron | 35.0% | |
TACAAACTGAGTTAAGCTCA+TGG | - | chr4_2:14490122-14490141 | Msa0590780:intron | 35.0% | |
ACAAACTGAGTTAAGCTCAT+GGG | - | chr4_2:14490123-14490142 | Msa0590780:intron | 35.0% | |
AGTGATGTATTCTTGGCAAA+TGG | - | chr4_2:14490364-14490383 | Msa0590780:CDS | 35.0% | |
! | TTAAGGAGAAAGGGTACAAT+AGG | + | chr4_2:14490399-14490418 | None:intergenic | 35.0% |
GTAGCATCATAATAATGTGG+AGG | + | chr4_2:14490424-14490443 | None:intergenic | 35.0% | |
GCAGTAGCATCATAATAATG+TGG | + | chr4_2:14490427-14490446 | None:intergenic | 35.0% | |
!! | TCAGTTCTAGAGCAATTGAA+TGG | - | chr4_2:14490565-14490584 | Msa0590780:CDS | 35.0% |
! | AAAGGCCTTATGAAACATGA+AGG | + | chr4_2:14490646-14490665 | None:intergenic | 35.0% |
! | TTTGAGGCAAAATCTCCATA+TGG | - | chr4_2:14490682-14490701 | Msa0590780:CDS | 35.0% |
TAATCTTCAAGTGACACCAT+TGG | - | chr4_2:14490762-14490781 | Msa0590780:CDS | 35.0% | |
GCAAAAGCTCAATATACCAT+TGG | - | chr4_2:14490813-14490832 | Msa0590780:CDS | 35.0% | |
!! | TTGTCTACCAAAAGTGTCAA+TGG | + | chr4_2:14488576-14488595 | None:intergenic | 35.0% |
!!! | GTAGTTTTAGCTGAAACAAG+TGG | - | chr4_2:14488609-14488628 | Msa0590780:CDS | 35.0% |
TTCCATTAGGAACCATCATT+AGG | - | chr4_2:14488667-14488686 | Msa0590780:CDS | 35.0% | |
ATCCTAATGATGGTTCCTAA+TGG | + | chr4_2:14488672-14488691 | None:intergenic | 35.0% | |
CTTAGACACAATCCTAATGA+TGG | + | chr4_2:14488682-14488701 | None:intergenic | 35.0% | |
! | CCAATTGTTTCTTCTTGTGA+TGG | + | chr4_2:14488723-14488742 | None:intergenic | 35.0% |
CCATCACAAGAAGAAACAAT+TGG | - | chr4_2:14488720-14488739 | Msa0590780:CDS | 35.0% | |
GTGTGGAAAATTTCAGTGAT+AGG | - | chr4_2:14488766-14488785 | Msa0590780:CDS | 35.0% | |
! | TTTTCGTCATAGTGAATGCA+AGG | - | chr4_2:14488791-14488810 | Msa0590780:CDS | 35.0% |
AATCATCCACATTCAACTTC+AGG | + | chr4_2:14488863-14488882 | None:intergenic | 35.0% | |
! | CTTACAAGTGAAGTACTTTG+TGG | + | chr4_2:14488892-14488911 | None:intergenic | 35.0% |
TACTTCACTTGTAAGATCTG+CGG | - | chr4_2:14488897-14488916 | Msa0590780:CDS | 35.0% | |
! | AATGTGCATCATAGAGGTTT+TGG | - | chr4_2:14488984-14489003 | Msa0590780:CDS | 35.0% |
!!! | TGAAGCTGGTTTTGTTAAGA+AGG | - | chr4_2:14489013-14489032 | Msa0590780:CDS | 35.0% |
!!! | GAAGCTGGTTTTGTTAAGAA+GGG | - | chr4_2:14489014-14489033 | Msa0590780:CDS | 35.0% |
! | TGTTTCTGTAACCAAGTTGT+TGG | + | chr4_2:14489109-14489128 | None:intergenic | 35.0% |
ATAGAAATGCATGTCACTGT+TGG | - | chr4_2:14489140-14489159 | Msa0590780:intron | 35.0% | |
! | GCTTTTATAATACCATTGCG+GGG | + | chr4_2:14489372-14489391 | None:intergenic | 35.0% |
! | TGTATTCGCTTGCATTTTGA+CGG | - | chr4_2:14489401-14489420 | Msa0590780:intron | 35.0% |
TGACATTACAATCGCAATTG+CGG | - | chr4_2:14489578-14489597 | Msa0590780:intron | 35.0% | |
CACCATTGTGGTTAATATGA+AGG | + | chr4_2:14489622-14489641 | None:intergenic | 35.0% | |
TGTGCAAGAGAAATGTAACT+TGG | - | chr4_2:14489697-14489716 | Msa0590780:intron | 35.0% | |
CAGTACAAGAGTCAATGAAA+CGG | - | chr4_2:14489812-14489831 | Msa0590780:intron | 35.0% | |
AGGGTTCTTATTATTGTGAC+CGG | - | chr4_2:14489964-14489983 | Msa0590780:intron | 35.0% | |
CACAATTAAATGTGGAGAAG+TGG | - | chr4_2:14490050-14490069 | Msa0590780:intron | 35.0% | |
CAATTAAATGTGGAGAAGTG+GGG | - | chr4_2:14490052-14490071 | Msa0590780:intron | 35.0% | |
TACAAACTGAGTTAAGCTCA+TGG | - | chr4_2:14490122-14490141 | Msa0590780:intron | 35.0% | |
ACAAACTGAGTTAAGCTCAT+GGG | - | chr4_2:14490123-14490142 | Msa0590780:intron | 35.0% | |
AGTGATGTATTCTTGGCAAA+TGG | - | chr4_2:14490364-14490383 | Msa0590780:CDS | 35.0% | |
! | TTAAGGAGAAAGGGTACAAT+AGG | + | chr4_2:14490399-14490418 | None:intergenic | 35.0% |
GTAGCATCATAATAATGTGG+AGG | + | chr4_2:14490424-14490443 | None:intergenic | 35.0% | |
GCAGTAGCATCATAATAATG+TGG | + | chr4_2:14490427-14490446 | None:intergenic | 35.0% | |
!! | TCAGTTCTAGAGCAATTGAA+TGG | - | chr4_2:14490565-14490584 | Msa0590780:CDS | 35.0% |
! | AAAGGCCTTATGAAACATGA+AGG | + | chr4_2:14490646-14490665 | None:intergenic | 35.0% |
! | TTTGAGGCAAAATCTCCATA+TGG | - | chr4_2:14490682-14490701 | Msa0590780:CDS | 35.0% |
TAATCTTCAAGTGACACCAT+TGG | - | chr4_2:14490762-14490781 | Msa0590780:CDS | 35.0% | |
GCAAAAGCTCAATATACCAT+TGG | - | chr4_2:14490813-14490832 | Msa0590780:CDS | 35.0% | |
! | GGTTTTCTCACACTTCCATT+AGG | - | chr4_2:14488654-14488673 | Msa0590780:CDS | 40.0% |
ACTTCACTTGTAAGATCTGC+GGG | - | chr4_2:14488898-14488917 | Msa0590780:CDS | 40.0% | |
GTAGAGAATGTGCATCATAG+AGG | - | chr4_2:14488978-14488997 | Msa0590780:CDS | 40.0% | |
! | AAAGTGCTTCAAAGCTTTCC+TGG | - | chr4_2:14489065-14489084 | Msa0590780:intron | 40.0% |
AAGTGCTTCAAAGCTTTCCT+GGG | - | chr4_2:14489066-14489085 | Msa0590780:intron | 40.0% | |
!! | TGTCACTGTTGGTTTGAAAG+AGG | - | chr4_2:14489151-14489170 | Msa0590780:intron | 40.0% |
!! | TGCAAAAACCCTTTAGGTTG+CGG | + | chr4_2:14489347-14489366 | None:intergenic | 40.0% |
AATTGCCGGTGGAACATAAA+TGG | - | chr4_2:14489431-14489450 | Msa0590780:intron | 40.0% | |
CAATGGCATTGCAACAATTG+CGG | - | chr4_2:14489473-14489492 | Msa0590780:intron | 40.0% | |
AATTGTGTCCCAGAACCTAA+AGG | - | chr4_2:14489536-14489555 | Msa0590780:intron | 40.0% | |
GACATTACAATCGCAATTGC+GGG | - | chr4_2:14489579-14489598 | Msa0590780:intron | 40.0% | |
TAATCGCAACATGAGACCAT+AGG | - | chr4_2:14489651-14489670 | Msa0590780:intron | 40.0% | |
TATGGATGCAGTTGTAGACT+TGG | + | chr4_2:14489752-14489771 | None:intergenic | 40.0% | |
! | TTAACCTAGCTCTCACACTT+TGG | - | chr4_2:14489871-14489890 | Msa0590780:intron | 40.0% |
ATTTCCAAAGTGTGAGAGCT+AGG | + | chr4_2:14489878-14489897 | None:intergenic | 40.0% | |
! | TAGCTCTCACACTTTGGAAA+TGG | - | chr4_2:14489877-14489896 | Msa0590780:intron | 40.0% |
AATTGTGAGCTATAGCAACC+AGG | + | chr4_2:14490037-14490056 | None:intergenic | 40.0% | |
TGCATGTTATATGCATGGGT+CGG | + | chr4_2:14490095-14490114 | None:intergenic | 40.0% | |
CAAACTGAGTTAAGCTCATG+GGG | - | chr4_2:14490124-14490143 | Msa0590780:intron | 40.0% | |
TCCTCTGAGTGATGTATTCT+TGG | - | chr4_2:14490357-14490376 | Msa0590780:CDS | 40.0% | |
!! | GCCATCACAATTTGTTGTGT+GGG | - | chr4_2:14490738-14490757 | Msa0590780:CDS | 40.0% |
TCCCACACAACAAATTGTGA+TGG | + | chr4_2:14490742-14490761 | None:intergenic | 40.0% | |
! | GGTTTTCTCACACTTCCATT+AGG | - | chr4_2:14488654-14488673 | Msa0590780:CDS | 40.0% |
ACTTCACTTGTAAGATCTGC+GGG | - | chr4_2:14488898-14488917 | Msa0590780:CDS | 40.0% | |
GTAGAGAATGTGCATCATAG+AGG | - | chr4_2:14488978-14488997 | Msa0590780:CDS | 40.0% | |
! | AAAGTGCTTCAAAGCTTTCC+TGG | - | chr4_2:14489065-14489084 | Msa0590780:intron | 40.0% |
AAGTGCTTCAAAGCTTTCCT+GGG | - | chr4_2:14489066-14489085 | Msa0590780:intron | 40.0% | |
!! | TGTCACTGTTGGTTTGAAAG+AGG | - | chr4_2:14489151-14489170 | Msa0590780:intron | 40.0% |
!! | TGCAAAAACCCTTTAGGTTG+CGG | + | chr4_2:14489347-14489366 | None:intergenic | 40.0% |
AATTGCCGGTGGAACATAAA+TGG | - | chr4_2:14489431-14489450 | Msa0590780:intron | 40.0% | |
CAATGGCATTGCAACAATTG+CGG | - | chr4_2:14489473-14489492 | Msa0590780:intron | 40.0% | |
AATTGTGTCCCAGAACCTAA+AGG | - | chr4_2:14489536-14489555 | Msa0590780:intron | 40.0% | |
GACATTACAATCGCAATTGC+GGG | - | chr4_2:14489579-14489598 | Msa0590780:intron | 40.0% | |
TAATCGCAACATGAGACCAT+AGG | - | chr4_2:14489651-14489670 | Msa0590780:intron | 40.0% | |
TATGGATGCAGTTGTAGACT+TGG | + | chr4_2:14489752-14489771 | None:intergenic | 40.0% | |
! | TTAACCTAGCTCTCACACTT+TGG | - | chr4_2:14489871-14489890 | Msa0590780:intron | 40.0% |
ATTTCCAAAGTGTGAGAGCT+AGG | + | chr4_2:14489878-14489897 | None:intergenic | 40.0% | |
! | TAGCTCTCACACTTTGGAAA+TGG | - | chr4_2:14489877-14489896 | Msa0590780:intron | 40.0% |
AATTGTGAGCTATAGCAACC+AGG | + | chr4_2:14490037-14490056 | None:intergenic | 40.0% | |
TGCATGTTATATGCATGGGT+CGG | + | chr4_2:14490095-14490114 | None:intergenic | 40.0% | |
CAAACTGAGTTAAGCTCATG+GGG | - | chr4_2:14490124-14490143 | Msa0590780:intron | 40.0% | |
TCCTCTGAGTGATGTATTCT+TGG | - | chr4_2:14490357-14490376 | Msa0590780:CDS | 40.0% | |
!! | GCCATCACAATTTGTTGTGT+GGG | - | chr4_2:14490738-14490757 | Msa0590780:CDS | 40.0% |
TCCCACACAACAAATTGTGA+TGG | + | chr4_2:14490742-14490761 | None:intergenic | 40.0% | |
AGGGACTCACAATTGTTGTG+TGG | + | chr4_2:14488831-14488850 | None:intergenic | 45.0% | |
! | CAACTTCAGGTTCTGGCAAA+GGG | + | chr4_2:14488850-14488869 | None:intergenic | 45.0% |
! | TCAACTTCAGGTTCTGGCAA+AGG | + | chr4_2:14488851-14488870 | None:intergenic | 45.0% |
! | CCACATTCAACTTCAGGTTC+TGG | + | chr4_2:14488857-14488876 | None:intergenic | 45.0% |
CCAGAACCTGAAGTTGAATG+TGG | - | chr4_2:14488854-14488873 | Msa0590780:CDS | 45.0% | |
CTTCACTTGTAAGATCTGCG+GGG | - | chr4_2:14488899-14488918 | Msa0590780:CDS | 45.0% | |
!! | GTGCATCATAGAGGTTTTGG+TGG | - | chr4_2:14488987-14489006 | Msa0590780:CDS | 45.0% |
!! | GGTTTTGGTGGAAATGAAGC+TGG | - | chr4_2:14488999-14489018 | Msa0590780:CDS | 45.0% |
CTTCAGCAACTCCAACAACT+TGG | - | chr4_2:14489095-14489114 | Msa0590780:intron | 45.0% | |
GGGGATTGCAAAAACCCTTT+AGG | + | chr4_2:14489353-14489372 | None:intergenic | 45.0% | |
TGCGGTTGCGATCAAAATGT+AGG | + | chr4_2:14489517-14489536 | None:intergenic | 45.0% | |
!! | TAGGTTCTGGGACACAATTG+CGG | + | chr4_2:14489535-14489554 | None:intergenic | 45.0% |
GGAAATGGATCCCACAAAAG+TGG | - | chr4_2:14489892-14489911 | Msa0590780:intron | 45.0% | |
AATGGATCCCACAAAAGTGG+TGG | - | chr4_2:14489895-14489914 | Msa0590780:intron | 45.0% | |
ATGGATCCCACAAAAGTGGT+GGG | - | chr4_2:14489896-14489915 | Msa0590780:intron | 45.0% | |
!! | ATATGCCCCACCACTTTTGT+GGG | + | chr4_2:14489905-14489924 | None:intergenic | 45.0% |
!! | TATATGCCCCACCACTTTTG+TGG | + | chr4_2:14489906-14489925 | None:intergenic | 45.0% |
CATGTTATATGCATGGGTCG+GGG | + | chr4_2:14490093-14490112 | None:intergenic | 45.0% | |
GCATGTTATATGCATGGGTC+GGG | + | chr4_2:14490094-14490113 | None:intergenic | 45.0% | |
TACATCACTCAGAGGAGACT+TGG | + | chr4_2:14490353-14490372 | None:intergenic | 45.0% | |
GCCAAGAATACATCACTCAG+AGG | + | chr4_2:14490361-14490380 | None:intergenic | 45.0% | |
GTGGAGGTCTTAAGGAGAAA+GGG | + | chr4_2:14490408-14490427 | None:intergenic | 45.0% | |
TGTGGAGGTCTTAAGGAGAA+AGG | + | chr4_2:14490409-14490428 | None:intergenic | 45.0% | |
AGTTTCCTCACAACTCCTGT+TGG | - | chr4_2:14490541-14490560 | Msa0590780:CDS | 45.0% | |
!! | TGCTCTAGAACTGATCCAAC+AGG | + | chr4_2:14490559-14490578 | None:intergenic | 45.0% |
! | CTACTCTAGGCATTGTGAAG+AGG | - | chr4_2:14490716-14490735 | Msa0590780:CDS | 45.0% |
!! | GGCCATCACAATTTGTTGTG+TGG | - | chr4_2:14490737-14490756 | Msa0590780:CDS | 45.0% |
TGCTGCTCCAAATCATCCAA+TGG | + | chr4_2:14490832-14490851 | None:intergenic | 45.0% | |
AGGGACTCACAATTGTTGTG+TGG | + | chr4_2:14488831-14488850 | None:intergenic | 45.0% | |
! | CAACTTCAGGTTCTGGCAAA+GGG | + | chr4_2:14488850-14488869 | None:intergenic | 45.0% |
! | TCAACTTCAGGTTCTGGCAA+AGG | + | chr4_2:14488851-14488870 | None:intergenic | 45.0% |
! | CCACATTCAACTTCAGGTTC+TGG | + | chr4_2:14488857-14488876 | None:intergenic | 45.0% |
CCAGAACCTGAAGTTGAATG+TGG | - | chr4_2:14488854-14488873 | Msa0590780:CDS | 45.0% | |
CTTCACTTGTAAGATCTGCG+GGG | - | chr4_2:14488899-14488918 | Msa0590780:CDS | 45.0% | |
!! | GTGCATCATAGAGGTTTTGG+TGG | - | chr4_2:14488987-14489006 | Msa0590780:CDS | 45.0% |
!! | GGTTTTGGTGGAAATGAAGC+TGG | - | chr4_2:14488999-14489018 | Msa0590780:CDS | 45.0% |
CTTCAGCAACTCCAACAACT+TGG | - | chr4_2:14489095-14489114 | Msa0590780:intron | 45.0% | |
GGGGATTGCAAAAACCCTTT+AGG | + | chr4_2:14489353-14489372 | None:intergenic | 45.0% | |
TGCGGTTGCGATCAAAATGT+AGG | + | chr4_2:14489517-14489536 | None:intergenic | 45.0% | |
!! | TAGGTTCTGGGACACAATTG+CGG | + | chr4_2:14489535-14489554 | None:intergenic | 45.0% |
GGAAATGGATCCCACAAAAG+TGG | - | chr4_2:14489892-14489911 | Msa0590780:intron | 45.0% | |
AATGGATCCCACAAAAGTGG+TGG | - | chr4_2:14489895-14489914 | Msa0590780:intron | 45.0% | |
ATGGATCCCACAAAAGTGGT+GGG | - | chr4_2:14489896-14489915 | Msa0590780:intron | 45.0% | |
!! | ATATGCCCCACCACTTTTGT+GGG | + | chr4_2:14489905-14489924 | None:intergenic | 45.0% |
!! | TATATGCCCCACCACTTTTG+TGG | + | chr4_2:14489906-14489925 | None:intergenic | 45.0% |
CATGTTATATGCATGGGTCG+GGG | + | chr4_2:14490093-14490112 | None:intergenic | 45.0% | |
GCATGTTATATGCATGGGTC+GGG | + | chr4_2:14490094-14490113 | None:intergenic | 45.0% | |
TACATCACTCAGAGGAGACT+TGG | + | chr4_2:14490353-14490372 | None:intergenic | 45.0% | |
GCCAAGAATACATCACTCAG+AGG | + | chr4_2:14490361-14490380 | None:intergenic | 45.0% | |
GTGGAGGTCTTAAGGAGAAA+GGG | + | chr4_2:14490408-14490427 | None:intergenic | 45.0% | |
TGTGGAGGTCTTAAGGAGAA+AGG | + | chr4_2:14490409-14490428 | None:intergenic | 45.0% | |
AGTTTCCTCACAACTCCTGT+TGG | - | chr4_2:14490541-14490560 | Msa0590780:CDS | 45.0% | |
!! | TGCTCTAGAACTGATCCAAC+AGG | + | chr4_2:14490559-14490578 | None:intergenic | 45.0% |
! | CTACTCTAGGCATTGTGAAG+AGG | - | chr4_2:14490716-14490735 | Msa0590780:CDS | 45.0% |
!! | GGCCATCACAATTTGTTGTG+TGG | - | chr4_2:14490737-14490756 | Msa0590780:CDS | 45.0% |
TGCTGCTCCAAATCATCCAA+TGG | + | chr4_2:14490832-14490851 | None:intergenic | 45.0% | |
!!! | TAATTTTAATTAATTTTACT+TGG | - | chr4_2:14489186-14489205 | Msa0590780:intron | 5.0% |
!!! | TAATTTTAATTAATTTTACT+TGG | - | chr4_2:14489186-14489205 | Msa0590780:intron | 5.0% |
ACTTGTAAGATCTGCGGGGA+GGG | - | chr4_2:14488903-14488922 | Msa0590780:CDS | 50.0% | |
!! | AGTTGCTGAAGAGTGTTCCC+AGG | + | chr4_2:14489086-14489105 | None:intergenic | 50.0% |
AGTTGTGGACCGCAACCTAA+AGG | - | chr4_2:14489335-14489354 | Msa0590780:intron | 50.0% | |
GTTGTGGACCGCAACCTAAA+GGG | - | chr4_2:14489336-14489355 | Msa0590780:intron | 50.0% | |
! | GGTTTTTGCAATCCCCGCAA+TGG | - | chr4_2:14489357-14489376 | Msa0590780:intron | 50.0% |
TTGACGGCAACTGCAATTGC+CGG | - | chr4_2:14489417-14489436 | Msa0590780:intron | 50.0% | |
TGGATCCCACAAAAGTGGTG+GGG | - | chr4_2:14489897-14489916 | Msa0590780:intron | 50.0% | |
ATCACTCAGAGGAGACTTGG+AGG | + | chr4_2:14490350-14490369 | None:intergenic | 50.0% | |
CTGATCCAACAGGAGTTGTG+AGG | + | chr4_2:14490549-14490568 | None:intergenic | 50.0% | |
ACTTGTAAGATCTGCGGGGA+GGG | - | chr4_2:14488903-14488922 | Msa0590780:CDS | 50.0% | |
!! | AGTTGCTGAAGAGTGTTCCC+AGG | + | chr4_2:14489086-14489105 | None:intergenic | 50.0% |
AGTTGTGGACCGCAACCTAA+AGG | - | chr4_2:14489335-14489354 | Msa0590780:intron | 50.0% | |
GTTGTGGACCGCAACCTAAA+GGG | - | chr4_2:14489336-14489355 | Msa0590780:intron | 50.0% | |
! | GGTTTTTGCAATCCCCGCAA+TGG | - | chr4_2:14489357-14489376 | Msa0590780:intron | 50.0% |
TTGACGGCAACTGCAATTGC+CGG | - | chr4_2:14489417-14489436 | Msa0590780:intron | 50.0% | |
TGGATCCCACAAAAGTGGTG+GGG | - | chr4_2:14489897-14489916 | Msa0590780:intron | 50.0% | |
ATCACTCAGAGGAGACTTGG+AGG | + | chr4_2:14490350-14490369 | None:intergenic | 50.0% | |
CTGATCCAACAGGAGTTGTG+AGG | + | chr4_2:14490549-14490568 | None:intergenic | 50.0% | |
CACTTGTAAGATCTGCGGGG+AGG | - | chr4_2:14488902-14488921 | Msa0590780:CDS | 55.0% | |
! | ATGTGGAGAAGTGGGGTGTC+CGG | - | chr4_2:14490059-14490078 | Msa0590780:intron | 55.0% |
CACTTGTAAGATCTGCGGGG+AGG | - | chr4_2:14488902-14488921 | Msa0590780:CDS | 55.0% | |
! | ATGTGGAGAAGTGGGGTGTC+CGG | - | chr4_2:14490059-14490078 | Msa0590780:intron | 55.0% |
ACGGCAACTGCAATTGCCGG+TGG | - | chr4_2:14489420-14489439 | Msa0590780:intron | 60.0% | |
! | TGTGGAGAAGTGGGGTGTCC+GGG | - | chr4_2:14490060-14490079 | Msa0590780:intron | 60.0% |
ATGGGTCGGGGTTCAAACCC+CGG | + | chr4_2:14490081-14490100 | None:intergenic | 60.0% | |
ACGGCAACTGCAATTGCCGG+TGG | - | chr4_2:14489420-14489439 | Msa0590780:intron | 60.0% | |
! | TGTGGAGAAGTGGGGTGTCC+GGG | - | chr4_2:14490060-14490079 | Msa0590780:intron | 60.0% |
ATGGGTCGGGGTTCAAACCC+CGG | + | chr4_2:14490081-14490100 | None:intergenic | 60.0% | |
! | GTGGAGAAGTGGGGTGTCCG+GGG | - | chr4_2:14490061-14490080 | Msa0590780:intron | 65.0% |
! | GTGGAGAAGTGGGGTGTCCG+GGG | - | chr4_2:14490061-14490080 | Msa0590780:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 14488540 | 14490855 | 14488540 | ID=Msa0590780;Name=Msa0590780 |
chr4_2 | mRNA | 14488540 | 14490855 | 14488540 | ID=Msa0590780-mRNA-1;Parent=Msa0590780;Name=Msa0590780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|0|0.5|2|0|418 |
chr4_2 | exon | 14490139 | 14490855 | 14490139 | ID=Msa0590780-mRNA-1:exon:4188;Parent=Msa0590780-mRNA-1 |
chr4_2 | exon | 14488540 | 14489076 | 14488540 | ID=Msa0590780-mRNA-1:exon:4187;Parent=Msa0590780-mRNA-1 |
chr4_2 | CDS | 14490139 | 14490855 | 14490139 | ID=Msa0590780-mRNA-1:cds;Parent=Msa0590780-mRNA-1 |
chr4_2 | CDS | 14488540 | 14489076 | 14488540 | ID=Msa0590780-mRNA-1:cds;Parent=Msa0590780-mRNA-1 |
Gene Sequence |
Protein sequence |