AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603090 MtrunA17_Chr4g0031081 96.958 263 8 0 1 263 1 263 0.0 508
Msa0603090 MtrunA17_Chr3g0110401 67.391 92 30 0 90 181 25 116 3.54e-39 135
Msa0603090 MtrunA17_Chr7g0223041 40.659 182 87 3 1 181 1 162 3.74e-34 125
Msa0603090 MtrunA17_Chr5g0438421 61.017 59 23 0 123 181 9 67 2.53e-16 73.2
Msa0603090 MtrunA17_Chr3g0145881 70.455 44 13 0 129 172 5 48 1.54e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603090 AT5G59950.5 52.985 268 98 6 1 263 1 245 2.42e-74 227
Msa0603090 AT5G59950.1 54.851 268 92 6 1 263 1 244 1.06e-73 225
Msa0603090 AT5G59950.3 54.104 268 92 7 1 263 1 242 1.92e-70 217
Msa0603090 AT5G59950.4 59.596 198 63 5 1 193 1 186 6.32e-69 212
Msa0603090 AT5G02530.2 60.096 208 66 5 1 192 1 207 4.30e-66 207
Msa0603090 AT5G02530.1 60.096 208 66 5 1 192 1 207 5.20e-66 207
Msa0603090 AT5G59950.2 63.793 174 50 2 90 263 18 178 1.49e-54 174
Msa0603090 AT5G37720.1 38.532 218 80 6 1 191 1 191 9.89e-37 132
Msa0603090 AT5G37720.2 38.532 218 80 6 1 191 1 191 1.04e-36 131
Msa0603090 AT1G66260.2 37.674 215 87 6 1 185 1 198 2.36e-36 131
Msa0603090 AT1G66260.1 37.674 215 87 6 1 185 1 198 2.36e-36 131

Find 172 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACATATATTTATGTATT+TGG 0.107533 4_2:+47232965 Msa0603090:three_prime_UTR
CAAGCTCTATATTTCTAATT+TGG 0.115469 4_2:+47229675 Msa0603090:CDS
AGATAAAATATTACTGCTTT+TGG 0.178915 4_2:-47233356 None:intergenic
GAGATGTTCATACTTGTTAT+AGG 0.231805 4_2:+47233434 Msa0603090:three_prime_UTR
TCTTTCCTGACTGGTAATTT+TGG 0.259701 4_2:+47233465 Msa0603090:three_prime_UTR
TGTTTCCAATGATGATATTA+AGG 0.267927 4_2:+47229705 Msa0603090:CDS
GATTGTGCTGGTCAAGATTC+AGG 0.279416 4_2:+47233545 Msa0603090:three_prime_UTR
TCCGGAAGCGGGTGCGGGTC+TGG 0.288742 4_2:-47229376 None:intergenic
AGATGTTCATACTTGTTATA+GGG 0.301430 4_2:+47233435 Msa0603090:three_prime_UTR
TACAACAATGTTCAACTAGA+TGG 0.304919 4_2:+47231929 Msa0603090:CDS
GCGTGGCTGTTAAAATTTAC+AGG 0.305113 4_2:+47233837 Msa0603090:three_prime_UTR
GTGTATCCTTTCCCACAAAT+AGG 0.305192 4_2:-47233876 None:intergenic
GTGAAAACTGTTGCTTGATA+TGG 0.317573 4_2:+47233021 Msa0603090:three_prime_UTR
CCAACAATCTCTATCTTCAT+TGG 0.329913 4_2:-47231956 None:intergenic
TACAGTGGAATCTTCAAATA+AGG 0.334507 4_2:+47233301 Msa0603090:three_prime_UTR
CTGTTGCTTGATATGGAGTT+TGG 0.336982 4_2:+47233028 Msa0603090:three_prime_UTR
TCCAGACCCGCACCCGCTTC+CGG 0.343394 4_2:+47229375 Msa0603090:CDS
TCTAAAATATTCGTATTCCT+TGG 0.345815 4_2:+47233061 Msa0603090:three_prime_UTR
TATATTTCTAATTTGGATTA+CGG 0.346613 4_2:+47229682 Msa0603090:CDS
ATATATATAATCTTATAATA+AGG 0.348035 4_2:+47233400 Msa0603090:three_prime_UTR
TCCAGGTCCGGAAGCGGGTG+CGG 0.349785 4_2:-47229382 None:intergenic
CTCATCTAGTTTCTCTATGT+TGG 0.351048 4_2:+47233654 Msa0603090:three_prime_UTR
TGCACTTCTCAACTGTGGTT+GGG 0.352733 4_2:+47233713 Msa0603090:three_prime_UTR
GAGCGATTAACGGCACGGTT+AGG 0.365394 4_2:-47229420 None:intergenic
CTAAAATATTCGTATTCCTT+GGG 0.365680 4_2:+47233062 Msa0603090:three_prime_UTR
CGTGCTCCTTCTATTGAAAC+TGG 0.375300 4_2:+47229649 Msa0603090:CDS
AACTCCAATGGTAGACCATT+TGG 0.376901 4_2:-47233604 None:intergenic
TTATCTTGTTATTTCTATGC+TGG 0.379219 4_2:+47233373 Msa0603090:three_prime_UTR
TCCTCTAGGGTTACCGGATC+CGG 0.383733 4_2:-47229346 None:intergenic
TCATCTAGTTTCTCTATGTT+GGG 0.392614 4_2:+47233655 Msa0603090:three_prime_UTR
GGTCTGGAACGGCCTCCTCT+AGG 0.397215 4_2:-47229360 None:intergenic
TGTTGCTTGATATGGAGTTT+GGG 0.404819 4_2:+47233029 Msa0603090:three_prime_UTR
CCAGGTCCGGAAGCGGGTGC+GGG 0.406344 4_2:-47229381 None:intergenic
TAGGGTTGTGGTAGGAGTGG+CGG 0.408293 4_2:-47233331 None:intergenic
CTGCACTTCTCAACTGTGGT+TGG 0.412896 4_2:+47233712 Msa0603090:three_prime_UTR
TAATACCTTAATATCATCAT+TGG 0.413189 4_2:-47229710 None:intergenic
CTGAAGTTGGTGACTTGAAA+CGG 0.414517 4_2:+47231726 Msa0603090:CDS
CCCGCACCCGCTTCCGGACC+TGG 0.416330 4_2:+47229381 Msa0603090:CDS
CCCCACACAATATAACTCTA+AGG 0.417342 4_2:-47233774 None:intergenic
CCAATGGCTGCATTTACAAC+AGG 0.420547 4_2:-47232007 None:intergenic
ACGGCCTCCTCTAGGGTTAC+CGG 0.420816 4_2:-47229352 None:intergenic
TGTATCCTTTCCCACAAATA+GGG 0.422072 4_2:-47233875 None:intergenic
ACCTTAGAGTTATATTGTGT+GGG 0.427402 4_2:+47233773 Msa0603090:three_prime_UTR
TTGGTTCCAGTTTCAATAGA+AGG 0.437733 4_2:-47229655 None:intergenic
TGGATTAATGAAGTGGGAGG+TGG 0.437745 4_2:+47233178 Msa0603090:three_prime_UTR
TGAGAGAGAAGAAGAGAAGA+AGG 0.438435 4_2:-47229177 None:intergenic
GTCTGGAACGGCCTCCTCTA+GGG 0.439936 4_2:-47229359 None:intergenic
GGTATATGCCTCCCTATTTG+TGG 0.442285 4_2:+47233864 Msa0603090:three_prime_UTR
AGCAGTGGGCAAGGCAGAGT+TGG 0.442400 4_2:+47232681 Msa0603090:intron
AGTTGGAGAATTTCGAGGGC+TGG 0.446718 4_2:+47232698 Msa0603090:CDS
GCATATATTATTTAGCAAGA+TGG 0.448475 4_2:+47233487 Msa0603090:three_prime_UTR
GGTGGTCGCGGTGGAGGTCG+TGG 0.448479 4_2:+47232786 Msa0603090:CDS
CGCGGTGGAGGTCGTGGTAG+AGG 0.452743 4_2:+47232792 Msa0603090:CDS
AGCGGGTCCAGGTCCGGAAG+CGG 0.454438 4_2:-47229388 None:intergenic
CGTGGTGGTGGTCGCGGTGG+AGG 0.456461 4_2:+47232780 Msa0603090:CDS
GGACCCCGTGGTGGTGGTCG+CGG 0.459565 4_2:+47232774 Msa0603090:CDS
ACGACGAGCGGGTCCAGGTC+CGG 0.461789 4_2:-47229394 None:intergenic
GTTGGAGAATTTCGAGGGCT+GGG 0.462387 4_2:+47232699 Msa0603090:CDS
GGATTAATGAAGTGGGAGGT+GGG 0.466689 4_2:+47233179 Msa0603090:three_prime_UTR
AAGCGGGTGCGGGTCTGGAA+CGG 0.467470 4_2:-47229371 None:intergenic
CAAATTAGAAATATAGAGCT+TGG 0.472207 4_2:-47229674 None:intergenic
CAGAAATAGCATTCCCAGCT+CGG 0.474255 4_2:+47233576 Msa0603090:three_prime_UTR
AGGGTTGTGGTAGGAGTGGC+GGG 0.475221 4_2:-47233330 None:intergenic
TACCTTAGAGTTATATTGTG+TGG 0.476393 4_2:+47233772 Msa0603090:three_prime_UTR
AGCGATTAACGGCACGGTTA+GGG 0.477079 4_2:-47229419 None:intergenic
AGAAATCGAGGACGTGGAAG+AGG 0.478286 4_2:+47232744 Msa0603090:CDS
AGCGGTGGACCCCGTGGTGG+TGG 0.478579 4_2:+47232768 Msa0603090:CDS
TTGTAATGTGCATGCACTCT+AGG 0.479490 4_2:+47233117 Msa0603090:three_prime_UTR
GTTACCTTAGCGGCGGAGTA+AGG 0.480948 4_2:-47229447 None:intergenic
AAATATTTGGCTGCAAAATG+TGG 0.482285 4_2:+47233232 Msa0603090:three_prime_UTR
GCACGACCACCTTGAGCTGC+TGG 0.485097 4_2:-47229631 None:intergenic
CAAGCCAGTGAATACCTTTG+AGG 0.485617 4_2:-47232046 None:intergenic
CCAATGAAGATAGAGATTGT+TGG 0.485750 4_2:+47231956 Msa0603090:CDS
GCGGGTCCAGGTCCGGAAGC+GGG 0.486070 4_2:-47229387 None:intergenic
TTTCCCTTCCCTAAAACATA+GGG 0.487158 4_2:-47232990 None:intergenic
TCATGCTGCCATGTCGTCTC+CGG 0.491863 4_2:-47229571 None:intergenic
ACTCCTTCAGTTTATTTGCA+TGG 0.493496 4_2:-47232877 None:intergenic
TTTCGAGGGCTGGGAGGAAG+AGG 0.493981 4_2:+47232708 Msa0603090:CDS
GTAAGGTGCGGAGCGATTAA+CGG 0.494184 4_2:-47229430 None:intergenic
CTGTTAAAATTTACAGGCGT+CGG 0.495963 4_2:+47233843 Msa0603090:three_prime_UTR
TGCCTCCCTATTTGTGGGAA+AGG 0.497409 4_2:+47233870 Msa0603090:three_prime_UTR
GTTCAACGAGATGGAGGAAG+AGG 0.502361 4_2:-47229252 None:intergenic
GCACTTCTCAACTGTGGTTG+GGG 0.505341 4_2:+47233714 Msa0603090:three_prime_UTR
ATATGCCAAAATTACCAGTC+AGG 0.510724 4_2:-47233470 None:intergenic
GTATATGCCTCCCTATTTGT+GGG 0.512196 4_2:+47233865 Msa0603090:three_prime_UTR
GGGATACGACGAGCGGGTCC+AGG 0.515614 4_2:-47229399 None:intergenic
TCCACCGCGACCACCACCAC+GGG 0.516036 4_2:-47232778 None:intergenic
CAACAAGTGGATTAATGAAG+TGG 0.519371 4_2:+47233171 Msa0603090:three_prime_UTR
GCTGGGAATGCTATTTCTGT+TGG 0.520047 4_2:-47233572 None:intergenic
TTATGATTAAACTGTTACAG+TGG 0.524352 4_2:+47233286 Msa0603090:three_prime_UTR
ACCATTTGGAATTCCCGAGC+TGG 0.525603 4_2:-47233590 None:intergenic
TCCGCGGACTCTGATTGTGC+TGG 0.527797 4_2:+47233533 Msa0603090:three_prime_UTR
GATGTTCATACTTGTTATAG+GGG 0.529174 4_2:+47233436 Msa0603090:three_prime_UTR
TTAATTTGTTTATCAACAAG+TGG 0.529927 4_2:+47233158 Msa0603090:three_prime_UTR
AGAAATAGCATTCCCAGCTC+GGG 0.531784 4_2:+47233577 Msa0603090:three_prime_UTR
AATTCCAAATGGTCTACCAT+TGG 0.535393 4_2:+47233600 Msa0603090:three_prime_UTR
AGAAGATCTTGATGCTGAGC+TGG 0.536011 4_2:+47232836 Msa0603090:CDS
CCCAGCTCGGGAATTCCAAA+TGG 0.537101 4_2:+47233589 Msa0603090:three_prime_UTR
CATATCGAGTGCTGCAGACA+TGG 0.539710 4_2:-47229289 None:intergenic
CCCCGTGGTGGTGGTCGCGG+TGG 0.540272 4_2:+47232777 Msa0603090:CDS
CCTGTTGTAAATGCAGCCAT+TGG 0.541269 4_2:+47232007 Msa0603090:CDS
AATTCCATTAAAATTTCCAA+TGG 0.541998 4_2:-47232023 None:intergenic
CCTTAGAGTTATATTGTGTG+GGG 0.548713 4_2:+47233774 Msa0603090:three_prime_UTR
ACAACAATGTTCAACTAGAT+GGG 0.548777 4_2:+47231930 Msa0603090:CDS
GGGCTGGGAGGAAGAGGTCA+AGG 0.549335 4_2:+47232714 Msa0603090:CDS
CCATTTGGAATTCCCGAGCT+GGG 0.554414 4_2:-47233589 None:intergenic
TGCACCAGGTGTAGATATGT+TGG 0.555986 4_2:-47231981 None:intergenic
TGGTAGAGGCCGCGACGAGA+AGG 0.558157 4_2:+47232806 Msa0603090:CDS
GGGAGTACGTCTTTCCTGAC+TGG 0.558277 4_2:+47233456 Msa0603090:three_prime_UTR
GGCAGAGTTGGAGAATTTCG+AGG 0.560672 4_2:+47232693 Msa0603090:CDS
CGCACCTTACTCCGCCGCTA+AGG 0.560963 4_2:+47229443 Msa0603090:CDS
AAAAGTTAGGGTTTCGTCGA+GGG 0.561491 4_2:-47229212 None:intergenic
AATTTGAGAGTTCAACGAGA+TGG 0.566696 4_2:-47229261 None:intergenic
AAAGTTAGGGTTTCGTCGAG+GGG 0.568717 4_2:-47229211 None:intergenic
GGCACGGCGTTCATTATGAC+AGG 0.569685 4_2:+47231747 Msa0603090:CDS
TCTGTCTTGAGCAGTGGGCA+AGG 0.569840 4_2:+47232672 Msa0603090:intron
CGAGGACGTGGAAGAGGTAG+CGG 0.572748 4_2:+47232750 Msa0603090:CDS
GCGGCGTATCCAGCAGCTCA+AGG 0.574647 4_2:+47229622 Msa0603090:CDS
GGATAGGGTTGTGGTAGGAG+TGG 0.575544 4_2:-47233334 None:intergenic
TTATTAGGTGCGCATTGTGA+TGG 0.577088 4_2:+47232939 Msa0603090:three_prime_UTR
TTTAGGCTCCGGAGACGACA+TGG 0.580892 4_2:+47229563 Msa0603090:intron
TTAACTGCACTTCTCAACTG+TGG 0.583484 4_2:+47233708 Msa0603090:three_prime_UTR
ATGGAGGAAGAGGAAGAAGA+AGG 0.586395 4_2:-47229242 None:intergenic
GTGGAATCTTCAAATAAGGT+AGG 0.588153 4_2:+47233305 Msa0603090:three_prime_UTR
TTGAGAGTTCAACGAGATGG+AGG 0.589166 4_2:-47229258 None:intergenic
AACAAGTGGATTAATGAAGT+GGG 0.589845 4_2:+47233172 Msa0603090:three_prime_UTR
AAGCAAGCTAGTTACCTTAG+CGG 0.593524 4_2:-47229457 None:intergenic
TACTTGGTTACAACGTGGCG+TGG 0.595162 4_2:+47233820 Msa0603090:three_prime_UTR
GTTTAATCATAACAAGGCAG+TGG 0.602935 4_2:-47233275 None:intergenic
GTTCTTGATGATGTCGTCGA+GGG 0.603597 4_2:-47229313 None:intergenic
TTTACAACAGGAGCTGCACC+AGG 0.606543 4_2:-47231995 None:intergenic
CTCCACCGCGACCACCACCA+CGG 0.607073 4_2:-47232779 None:intergenic
TGTCACGGTGTTAACTCCAA+TGG 0.613178 4_2:-47233616 None:intergenic
GCAGAGTTGGAGAATTTCGA+GGG 0.613892 4_2:+47232694 Msa0603090:CDS
TGACAGGAGTGGCAGATCGA+AGG 0.615589 4_2:+47231763 Msa0603090:CDS
TGCAGATCAGCATGTAGCTG+CGG 0.622127 4_2:+47229600 Msa0603090:CDS
AGGCCATGCAAATAAACTGA+AGG 0.625121 4_2:+47232874 Msa0603090:CDS
CCGCAGAAGTAGTCTTCTCA+CGG 0.626643 4_2:+47231876 Msa0603090:CDS
ATTCGAAGAAATCGAGGACG+TGG 0.626806 4_2:+47232738 Msa0603090:CDS
GGAACCAACATATCTACACC+TGG 0.632548 4_2:+47231977 Msa0603090:CDS
AATATTTGGCTGCAAAATGT+GGG 0.635559 4_2:+47233233 Msa0603090:three_prime_UTR
TCAAAGTTCATACATTCCCA+AGG 0.637524 4_2:-47233078 None:intergenic
ACCAGCACAATCAGAGTCCG+CGG 0.639869 4_2:-47233534 None:intergenic
AGAGGTAGCGGTGGACCCCG+TGG 0.642185 4_2:+47232762 Msa0603090:CDS
GGACGTGGAAGAGGTAGCGG+TGG 0.645696 4_2:+47232753 Msa0603090:CDS
GGTAGCGGTGGACCCCGTGG+TGG 0.648727 4_2:+47232765 Msa0603090:CDS
CCGTGAGAAGACTACTTCTG+CGG 0.658109 4_2:-47231876 None:intergenic
GTTGGTGACTTGAAACGGCA+CGG 0.661190 4_2:+47231731 Msa0603090:CDS
CAAGGCATTCGAAGAAATCG+AGG 0.662681 4_2:+47232732 Msa0603090:CDS
TCCGGATCCGGTAACCCTAG+AGG 0.663283 4_2:+47229345 Msa0603090:CDS
CGGTTAGGGATACGACGAGC+GGG 0.665248 4_2:-47229405 None:intergenic
TGCATTGATAGATGAGAGCG+CGG 0.667133 4_2:-47233204 None:intergenic
GGCGTTCATTATGACAGGAG+TGG 0.667636 4_2:+47231752 Msa0603090:CDS
ATCCTTTCCCACAAATAGGG+AGG 0.669613 4_2:-47233872 None:intergenic
TGTTCTTGATGATGTCGTCG+AGG 0.671065 4_2:-47229314 None:intergenic
GGAGAATTTCGAGGGCTGGG+AGG 0.677900 4_2:+47232702 Msa0603090:CDS
GGATCCGGTAACCCTAGAGG+AGG 0.679060 4_2:+47229348 Msa0603090:CDS
CTTTATGAAATAATGTGTCA+CGG 0.682889 4_2:-47233631 None:intergenic
AAGTGGATTAATGAAGTGGG+AGG 0.684223 4_2:+47233175 Msa0603090:three_prime_UTR
GTGCGGAGCGATTAACGGCA+CGG 0.684912 4_2:-47229425 None:intergenic
CATCTGTTCTGCTTGCTCCG+CGG 0.686279 4_2:+47233517 Msa0603090:three_prime_UTR
CAAGCTAGTTACCTTAGCGG+CGG 0.686896 4_2:-47229454 None:intergenic
AGATCAGCATGTAGCTGCGG+CGG 0.689959 4_2:+47229603 Msa0603090:CDS
ATGTTGGGATTCGAAATGCA+CGG 0.691997 4_2:+47233670 Msa0603090:three_prime_UTR
GCTGGAGAAGTATCATGCGG+AGG 0.695135 4_2:+47232854 Msa0603090:CDS
ACGGTTAGGGATACGACGAG+CGG 0.695701 4_2:-47229406 None:intergenic
GCGTATCCAGCAGCTCAAGG+TGG 0.706772 4_2:+47229625 Msa0603090:CDS
GTAACAGTTTAATCATAACA+AGG 0.708487 4_2:-47233281 None:intergenic
CTTAGCGGCGGAGTAAGGTG+CGG 0.710964 4_2:-47229442 None:intergenic
TGAGCTGGAGAAGTATCATG+CGG 0.732375 4_2:+47232851 Msa0603090:CDS
CTGCAGATACCTTCTCGTCG+CGG 0.732387 4_2:-47232815 None:intergenic
CCACCGCGACCACCACCACG+GGG 0.756993 4_2:-47232777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr4_2:47231578-47231597 Msa0603090:intron 0.0%
!!! TAAAAATAAAGTTTTCATTT+TGG - chr4_2:47229901-47229920 None:intergenic 10.0%
!! GTATTTAGAAAAATTATTTA+AGG + chr4_2:47230108-47230127 Msa0603090:intron 10.0%
!! AAAATCATAAATATAAGTTA+AGG + chr4_2:47230145-47230164 Msa0603090:intron 10.0%
!! NNNNNNNNNTGATTTCTAAT+TGG + chr4_2:47230716-47230735 Msa0603090:intron 10.0%
!!! TGAATTTTAAACTTTATAAT+TGG + chr4_2:47230935-47230954 Msa0603090:intron 10.0%
!! TAATTTATCCTAAATATTAA+AGG + chr4_2:47231203-47231222 Msa0603090:intron 10.0%
!!! ATATATATATTCACATATTT+TGG - chr4_2:47231568-47231587 None:intergenic 10.0%
!!! ATTTGATTTGTTTTGATTTT+AGG + chr4_2:47229546-47229565 Msa0603090:intron 15.0%
!!! TATATTTCTAATTTGGATTA+CGG + chr4_2:47229682-47229701 Msa0603090:CDS 15.0%
!! TTTAAACTTTATAATTGGTA+AGG + chr4_2:47230940-47230959 Msa0603090:intron 15.0%
!! AAAATGAACCTTTAATATTT+AGG - chr4_2:47231214-47231233 None:intergenic 15.0%
!!! TTTACTTTTTTATTTGTGAA+GGG + chr4_2:47231510-47231529 Msa0603090:intron 15.0%
!! TAAACATTAATTGTAAAACA+AGG - chr4_2:47231672-47231691 None:intergenic 15.0%
!!! AAAAAAAAACTCTTTTTCAT+AGG + chr4_2:47231850-47231869 Msa0603090:intron 15.0%
!!! AAAAAAAACTCTTTTTCATA+GGG + chr4_2:47231851-47231870 Msa0603090:intron 15.0%
!!! GAATATTTTTTTTGACATAT+AGG + chr4_2:47232554-47232573 Msa0603090:intron 15.0%
!! ACTACATATATTTATGTATT+TGG + chr4_2:47232965-47232984 Msa0603090:three_prime_UTR 15.0%
!! TAATACCTTAATATCATCAT+TGG - chr4_2:47229713-47229732 None:intergenic 20.0%
!!! ATACCTTTTACATAAAAAGT+CGG - chr4_2:47230092-47230111 None:intergenic 20.0%
!! TTTAAATTAGGCTAATTCTA+TGG + chr4_2:47230320-47230339 Msa0603090:intron 20.0%
!!! AAAAGTTCAGATTGATTTAA+AGG - chr4_2:47230495-47230514 None:intergenic 20.0%
!!! AATTTTGAACTTCTTTTGTA+AGG - chr4_2:47231106-47231125 None:intergenic 20.0%
!!! CTTTACTTTTTTATTTGTGA+AGG + chr4_2:47231509-47231528 Msa0603090:intron 20.0%
!! ATGCAAAATTACAATCTAAT+AGG - chr4_2:47231541-47231560 None:intergenic 20.0%
!!! ATTCAATTTTTACATTATGC+AGG + chr4_2:47231694-47231713 Msa0603090:intron 20.0%
!! AATTCCATTAAAATTTCCAA+TGG - chr4_2:47232026-47232045 None:intergenic 20.0%
!! GTTTGACTGTATTATTAATT+TGG + chr4_2:47232608-47232627 Msa0603090:intron 20.0%
!!! TTAATTTGTTTATCAACAAG+TGG + chr4_2:47233158-47233177 Msa0603090:three_prime_UTR 20.0%
!!! GATAAAATATTACTGCTTTT+GGG - chr4_2:47233358-47233377 None:intergenic 20.0%
!!! AGATAAAATATTACTGCTTT+TGG - chr4_2:47233359-47233378 None:intergenic 20.0%
! ATCAAGAACAACAAAAAATC+CGG + chr4_2:47229327-47229346 Msa0603090:CDS 25.0%
!! GATTTGTAAACCCTAAATTT+TGG + chr4_2:47229518-47229537 Msa0603090:intron 25.0%
! CAAATCCAAACCAAAATTTA+GGG - chr4_2:47229531-47229550 None:intergenic 25.0%
! TCAAATCCAAACCAAAATTT+AGG - chr4_2:47229532-47229551 None:intergenic 25.0%
! CAAATTAGAAATATAGAGCT+TGG - chr4_2:47229677-47229696 None:intergenic 25.0%
!! CAAGCTCTATATTTCTAATT+TGG + chr4_2:47229675-47229694 Msa0603090:CDS 25.0%
! TGTTTCCAATGATGATATTA+AGG + chr4_2:47229705-47229724 Msa0603090:CDS 25.0%
!!! ATAAGTTGATTATCCAAACA+GGG - chr4_2:47229851-47229870 None:intergenic 25.0%
!! TTTTACATAAAAAGTCGGTT+TGG - chr4_2:47230087-47230106 None:intergenic 25.0%
!!! AAACCGACTTTTTATGTAAA+AGG + chr4_2:47230086-47230105 Msa0603090:intron 25.0%
! TTAAATCATACTGAAGAAGA+GGG - chr4_2:47230179-47230198 None:intergenic 25.0%
! ATTAAATCATACTGAAGAAG+AGG - chr4_2:47230180-47230199 None:intergenic 25.0%
!! TAGTATCTGGAAATTTGTTT+GGG + chr4_2:47230220-47230239 Msa0603090:intron 25.0%
!!! TAAATGTTGATTTAAAGCCA+CGG - chr4_2:47230563-47230582 None:intergenic 25.0%
! TAGCTTATATTCATGATTAC+TGG + chr4_2:47230778-47230797 Msa0603090:intron 25.0%
!!! TTGGATTAGCTTTTAACATA+CGG - chr4_2:47230968-47230987 None:intergenic 25.0%
!! TGTTTTACTGTTGTGATAAA+TGG + chr4_2:47231359-47231378 Msa0603090:intron 25.0%
! CAAAATTACAATCTAATAGG+TGG - chr4_2:47231538-47231557 None:intergenic 25.0%
!!! ATTTTAATGGAATTCCTCAA+AGG + chr4_2:47232032-47232051 Msa0603090:CDS 25.0%
! GTATTAAGAACAAAGAAACA+TGG - chr4_2:47232493-47232512 None:intergenic 25.0%
!! TTAATACTGTGTTCCATTTT+TGG + chr4_2:47232506-47232525 Msa0603090:intron 25.0%
!! CTTTTACATCTATGGTTATT+AGG + chr4_2:47232924-47232943 Msa0603090:three_prime_UTR 25.0%
!! TCTAAAATATTCGTATTCCT+TGG + chr4_2:47233061-47233080 Msa0603090:three_prime_UTR 25.0%
! CTAAAATATTCGTATTCCTT+GGG + chr4_2:47233062-47233081 Msa0603090:three_prime_UTR 25.0%
! TCAATGCACAGAAAAATATT+TGG + chr4_2:47233219-47233238 Msa0603090:three_prime_UTR 25.0%
! GTAACAGTTTAATCATAACA+AGG - chr4_2:47233284-47233303 None:intergenic 25.0%
! TTATGATTAAACTGTTACAG+TGG + chr4_2:47233286-47233305 Msa0603090:three_prime_UTR 25.0%
!!! TTATCTTGTTATTTCTATGC+TGG + chr4_2:47233373-47233392 Msa0603090:three_prime_UTR 25.0%
!!! AGATGTTCATACTTGTTATA+GGG + chr4_2:47233435-47233454 Msa0603090:three_prime_UTR 25.0%
! GCATATATTATTTAGCAAGA+TGG + chr4_2:47233487-47233506 Msa0603090:three_prime_UTR 25.0%
! CTTTATGAAATAATGTGTCA+CGG - chr4_2:47233634-47233653 None:intergenic 25.0%
!!! GTAAACCCTAAATTTTGGTT+TGG + chr4_2:47229523-47229542 Msa0603090:intron 30.0%
!!! TTTGTTTTGATTTTAGGCTC+CGG + chr4_2:47229552-47229571 Msa0603090:intron 30.0%
!! GATTCAGAGATCCATTTTTA+TGG + chr4_2:47229825-47229844 Msa0603090:intron 30.0%
!! GATAAGTTGATTATCCAAAC+AGG - chr4_2:47229852-47229871 None:intergenic 30.0%
! GATGTTTTCAAAAGCAATCT+TGG + chr4_2:47229967-47229986 Msa0603090:intron 30.0%
! GTAGTATCTGGAAATTTGTT+TGG + chr4_2:47230219-47230238 Msa0603090:intron 30.0%
!!! GATTTTGGTTTTTGAGTTGA+AGG + chr4_2:47230291-47230310 Msa0603090:intron 30.0%
!!! TGAAGGTTGGGTTTTAAATT+AGG + chr4_2:47230308-47230327 Msa0603090:intron 30.0%
!!! GCACAATTTTTTTCAACCAT+TGG + chr4_2:47230370-47230389 Msa0603090:intron 30.0%
!! TAAAGGCTAGTTTAGTTCTA+TGG - chr4_2:47230478-47230497 None:intergenic 30.0%
!! AAATGTTGATTTAAAGCCAC+GGG - chr4_2:47230562-47230581 None:intergenic 30.0%
!! ATGATTACTGGCTTCTATTA+GGG + chr4_2:47230790-47230809 Msa0603090:intron 30.0%
!!! TGGATTAGCTTTTAACATAC+GGG - chr4_2:47230967-47230986 None:intergenic 30.0%
TGTTAAAAGCTAATCCAAAC+AGG + chr4_2:47230970-47230989 Msa0603090:intron 30.0%
GTTAAAAGCTAATCCAAACA+GGG + chr4_2:47230971-47230990 Msa0603090:intron 30.0%
TAATGTATTAGTGTGCTTCA+CGG + chr4_2:47231009-47231028 Msa0603090:intron 30.0%
ACTAATCTATGATGCTAAAC+GGG - chr4_2:47231311-47231330 None:intergenic 30.0%
CACTAATCTATGATGCTAAA+CGG - chr4_2:47231312-47231331 None:intergenic 30.0%
AGATTAGTGACCAAGTTATA+TGG + chr4_2:47231323-47231342 Msa0603090:intron 30.0%
TAAACCTAAGCCATATAACT+TGG - chr4_2:47231336-47231355 None:intergenic 30.0%
ACATCTTGAATGCACTATAA+AGG + chr4_2:47231392-47231411 Msa0603090:intron 30.0%
!!! GCATATTGAGTTTTAGTTCT+GGG - chr4_2:47231486-47231505 None:intergenic 30.0%
!!! AGCATATTGAGTTTTAGTTC+TGG - chr4_2:47231487-47231506 None:intergenic 30.0%
ACAGAAAGAATTGATCAGAA+CGG - chr4_2:47231815-47231834 None:intergenic 30.0%
TACAACAATGTTCAACTAGA+TGG + chr4_2:47231929-47231948 Msa0603090:CDS 30.0%
ACAACAATGTTCAACTAGAT+GGG + chr4_2:47231930-47231949 Msa0603090:CDS 30.0%
CTAATTATTGGATGCTCAAA+TGG + chr4_2:47232140-47232159 Msa0603090:intron 30.0%
ATTGAAAATTCCTCGTAACA+AGG - chr4_2:47232278-47232297 None:intergenic 30.0%
!! CTTTTCATCCTTTGACTTAT+TGG + chr4_2:47232352-47232371 Msa0603090:intron 30.0%
TGCAGCAATTTACTGATATA+GGG - chr4_2:47232413-47232432 None:intergenic 30.0%
TTGCAGCAATTTACTGATAT+AGG - chr4_2:47232414-47232433 None:intergenic 30.0%
AAATTGCTGCAAACAAATTC+TGG + chr4_2:47232422-47232441 Msa0603090:intron 30.0%
TTCTAAATACCCTGTGTATA+TGG + chr4_2:47232456-47232475 Msa0603090:intron 30.0%
CAAAAAACGAGATCCAAAAA+TGG - chr4_2:47232522-47232541 None:intergenic 30.0%
TTCTTTGTTAACAGTATCAG+TGG - chr4_2:47232583-47232602 None:intergenic 30.0%
!! TCTTCTTGCTTTTACATCTA+TGG + chr4_2:47232916-47232935 Msa0603090:three_prime_UTR 30.0%
!! AACAAGTGGATTAATGAAGT+GGG + chr4_2:47233172-47233191 Msa0603090:three_prime_UTR 30.0%
AAATATTTGGCTGCAAAATG+TGG + chr4_2:47233232-47233251 Msa0603090:three_prime_UTR 30.0%
AATATTTGGCTGCAAAATGT+GGG + chr4_2:47233233-47233252 Msa0603090:three_prime_UTR 30.0%
TACAGTGGAATCTTCAAATA+AGG + chr4_2:47233301-47233320 Msa0603090:three_prime_UTR 30.0%
!!! ATATTACTGCTTTTGGGATA+GGG - chr4_2:47233352-47233371 None:intergenic 30.0%
!!! AATATTACTGCTTTTGGGAT+AGG - chr4_2:47233353-47233372 None:intergenic 30.0%
!! GAGATGTTCATACTTGTTAT+AGG + chr4_2:47233434-47233453 Msa0603090:three_prime_UTR 30.0%
!! GATGTTCATACTTGTTATAG+GGG + chr4_2:47233436-47233455 Msa0603090:three_prime_UTR 30.0%
! TCATCTAGTTTCTCTATGTT+GGG + chr4_2:47233655-47233674 Msa0603090:three_prime_UTR 30.0%
TACCTTAGAGTTATATTGTG+TGG + chr4_2:47233772-47233791 Msa0603090:three_prime_UTR 30.0%
ACCTTAGAGTTATATTGTGT+GGG + chr4_2:47233773-47233792 Msa0603090:three_prime_UTR 30.0%
!!! ATTGAAGTGCTTGTTTTACT+TGG + chr4_2:47233804-47233823 Msa0603090:three_prime_UTR 30.0%
GAAGGATCGTGAAAAAGTTA+GGG - chr4_2:47229227-47229246 None:intergenic 35.0%
AGAAGGATCGTGAAAAAGTT+AGG - chr4_2:47229228-47229247 None:intergenic 35.0%
AATTTGAGAGTTCAACGAGA+TGG - chr4_2:47229264-47229283 None:intergenic 35.0%
AACAACAAAAAATCCGGATC+CGG + chr4_2:47229333-47229352 Msa0603090:CDS 35.0%
TTGGTTCCAGTTTCAATAGA+AGG - chr4_2:47229658-47229677 None:intergenic 35.0%
!! CATAAAAAGTCGGTTTGGAT+TGG - chr4_2:47230082-47230101 None:intergenic 35.0%
GTGATTAGTGAAGTAGTATC+TGG + chr4_2:47230207-47230226 Msa0603090:intron 35.0%
!!! TTGGTTTTTGAGTTGAAGGT+TGG + chr4_2:47230295-47230314 Msa0603090:intron 35.0%
!!! TGGTTTTTGAGTTGAAGGTT+GGG + chr4_2:47230296-47230315 Msa0603090:intron 35.0%
TTTCTTATGCACTCAAGATG+TGG + chr4_2:47230536-47230555 Msa0603090:intron 35.0%
!! CATGATTACTGGCTTCTATT+AGG + chr4_2:47230789-47230808 Msa0603090:intron 35.0%
TTCTTTGTATAAGCCCTGTT+TGG - chr4_2:47230987-47231006 None:intergenic 35.0%
CTCTTACATTGCAGCATTAT+CGG + chr4_2:47231051-47231070 Msa0603090:intron 35.0%
TCTTACATTGCAGCATTATC+GGG + chr4_2:47231052-47231071 Msa0603090:intron 35.0%
! TATCGGGGTTTAAAATCTTG+AGG + chr4_2:47231068-47231087 Msa0603090:intron 35.0%
CTAATCTATGATGCTAAACG+GGG - chr4_2:47231310-47231329 None:intergenic 35.0%
ATAGTGCATTCAAGATGTGA+CGG - chr4_2:47231390-47231409 None:intergenic 35.0%
!!! CAGGAATTGTTTTCTGAAGT+TGG + chr4_2:47231713-47231732 Msa0603090:intron 35.0%
CCAACAATCTCTATCTTCAT+TGG - chr4_2:47231959-47231978 None:intergenic 35.0%
CCAATGAAGATAGAGATTGT+TGG + chr4_2:47231956-47231975 Msa0603090:CDS 35.0%
! GCAGCCATTGGAAATTTTAA+TGG + chr4_2:47232019-47232038 Msa0603090:CDS 35.0%
!! AATTCCTCAAAGGTATTCAC+TGG + chr4_2:47232042-47232061 Msa0603090:intron 35.0%
ATTCTACATGCTTCCTGTAT+TGG + chr4_2:47232116-47232135 Msa0603090:intron 35.0%
TTCTACATGCTTCCTGTATT+GGG + chr4_2:47232117-47232136 Msa0603090:intron 35.0%
TCCTGTATTGGGCTAATTAT+TGG + chr4_2:47232128-47232147 Msa0603090:intron 35.0%
TCCAATAATTAGCCCAATAC+AGG - chr4_2:47232132-47232151 None:intergenic 35.0%
! GATGCTCAAATGGTGATTTT+GGG + chr4_2:47232150-47232169 Msa0603090:intron 35.0%
GTTAATCAAGTATAGCAGCA+AGG - chr4_2:47232208-47232227 None:intergenic 35.0%
!! TATTTGTTGTCCTTGTTACG+AGG + chr4_2:47232265-47232284 Msa0603090:intron 35.0%
!! TTTCCCATTCGTTGACTTAT+TGG + chr4_2:47232315-47232334 Msa0603090:intron 35.0%
TGAGACTTCCAATAAGTCAA+AGG - chr4_2:47232363-47232382 None:intergenic 35.0%
ACTCCTTCAGTTTATTTGCA+TGG - chr4_2:47232880-47232899 None:intergenic 35.0%
!! TATTTGGAGCCCTATGTTTT+AGG + chr4_2:47232981-47233000 Msa0603090:three_prime_UTR 35.0%
!! ATTTGGAGCCCTATGTTTTA+GGG + chr4_2:47232982-47233001 Msa0603090:three_prime_UTR 35.0%
TTTCCCTTCCCTAAAACATA+GGG - chr4_2:47232993-47233012 None:intergenic 35.0%
! TTTTCCCTTCCCTAAAACAT+AGG - chr4_2:47232994-47233013 None:intergenic 35.0%
! GTGAAAACTGTTGCTTGATA+TGG + chr4_2:47233021-47233040 Msa0603090:three_prime_UTR 35.0%
! TGTTGCTTGATATGGAGTTT+GGG + chr4_2:47233029-47233048 Msa0603090:three_prime_UTR 35.0%
TCAAAGTTCATACATTCCCA+AGG - chr4_2:47233081-47233100 None:intergenic 35.0%
!! CAACAAGTGGATTAATGAAG+TGG + chr4_2:47233171-47233190 Msa0603090:three_prime_UTR 35.0%
GTTTAATCATAACAAGGCAG+TGG - chr4_2:47233278-47233297 None:intergenic 35.0%
GTGGAATCTTCAAATAAGGT+AGG + chr4_2:47233305-47233324 Msa0603090:three_prime_UTR 35.0%
! TCTTTCCTGACTGGTAATTT+TGG + chr4_2:47233465-47233484 Msa0603090:three_prime_UTR 35.0%
ATATGCCAAAATTACCAGTC+AGG - chr4_2:47233473-47233492 None:intergenic 35.0%
AATTCCAAATGGTCTACCAT+TGG + chr4_2:47233600-47233619 Msa0603090:three_prime_UTR 35.0%
! CTCATCTAGTTTCTCTATGT+TGG + chr4_2:47233654-47233673 Msa0603090:three_prime_UTR 35.0%
CCTTAGAGTTATATTGTGTG+GGG + chr4_2:47233774-47233793 Msa0603090:three_prime_UTR 35.0%
! TGTTTTACTTGGTTACAACG+TGG + chr4_2:47233815-47233834 Msa0603090:three_prime_UTR 35.0%
CTGTTAAAATTTACAGGCGT+CGG + chr4_2:47233843-47233862 Msa0603090:three_prime_UTR 35.0%
TGTATCCTTTCCCACAAATA+GGG - chr4_2:47233878-47233897 None:intergenic 35.0%
TGAGAGAGAAGAAGAGAAGA+AGG - chr4_2:47229180-47229199 None:intergenic 40.0%
AAAAGTTAGGGTTTCGTCGA+GGG - chr4_2:47229215-47229234 None:intergenic 40.0%
AAAAAGTTAGGGTTTCGTCG+AGG - chr4_2:47229216-47229235 None:intergenic 40.0%
AAGCAAGCTAGTTACCTTAG+CGG - chr4_2:47229460-47229479 None:intergenic 40.0%
!! TCCATTTTTATGGCCCTGTT+TGG + chr4_2:47229835-47229854 Msa0603090:intron 40.0%
TCCAAACAGGGCCATAAAAA+TGG - chr4_2:47229839-47229858 None:intergenic 40.0%
TTGGATCAAGTTAGATGTGG+CGG - chr4_2:47230407-47230426 None:intergenic 40.0%
CCATTGGATCAAGTTAGATG+TGG - chr4_2:47230410-47230429 None:intergenic 40.0%
CCACATCTAACTTGATCCAA+TGG + chr4_2:47230407-47230426 Msa0603090:intron 40.0%
CATCTAACTTGATCCAATGG+TGG + chr4_2:47230410-47230429 Msa0603090:intron 40.0%
AGCATGTTTGTTTCCACCAT+TGG - chr4_2:47230426-47230445 None:intergenic 40.0%
GGTGGAAACAAACATGCTTA+TGG + chr4_2:47230428-47230447 Msa0603090:intron 40.0%
!! TACTGGCTTCTATTAGGGTT+TGG + chr4_2:47230795-47230814 Msa0603090:intron 40.0%
! ACTGGCTTCTATTAGGGTTT+GGG + chr4_2:47230796-47230815 Msa0603090:intron 40.0%
CTTACATTGCAGCATTATCG+GGG + chr4_2:47231053-47231072 Msa0603090:intron 40.0%
! GAACTTCTTTTGTAAGGACC+TGG - chr4_2:47231100-47231119 None:intergenic 40.0%
CTCGCAAGCATCTTATGAAT+TGG - chr4_2:47231238-47231257 None:intergenic 40.0%
GTGACCAAGTTATATGGCTT+AGG + chr4_2:47231329-47231348 Msa0603090:intron 40.0%
!! GCACTATAAAGGCACTCTTA+AGG + chr4_2:47231403-47231422 Msa0603090:intron 40.0%
!! TTTAGTTCTGGGTAGAAGGA+AGG - chr4_2:47231475-47231494 None:intergenic 40.0%
!!! GAGTTTTAGTTCTGGGTAGA+AGG - chr4_2:47231479-47231498 None:intergenic 40.0%
!! CTGAAGTTGGTGACTTGAAA+CGG + chr4_2:47231726-47231745 Msa0603090:CDS 40.0%
! CTTGTCCAGTTGGCTTAATT+TGG + chr4_2:47231789-47231808 Msa0603090:intron 40.0%
! GGATGCTCAAATGGTGATTT+TGG + chr4_2:47232149-47232168 Msa0603090:intron 40.0%
CGTCCAATAAGTCAACGAAT+GGG - chr4_2:47232321-47232340 None:intergenic 40.0%
ACGTCCAATAAGTCAACGAA+TGG - chr4_2:47232322-47232341 None:intergenic 40.0%
TGATATAGGGTCACAACAAG+GGG - chr4_2:47232400-47232419 None:intergenic 40.0%
CTGATATAGGGTCACAACAA+GGG - chr4_2:47232401-47232420 None:intergenic 40.0%
ACTGATATAGGGTCACAACA+AGG - chr4_2:47232402-47232421 None:intergenic 40.0%
TACTTATCTGTCTTGAGCAG+TGG + chr4_2:47232666-47232685 Msa0603090:intron 40.0%
ACTTATCTGTCTTGAGCAGT+GGG + chr4_2:47232667-47232686 Msa0603090:intron 40.0%
AGGCCATGCAAATAAACTGA+AGG + chr4_2:47232874-47232893 Msa0603090:CDS 40.0%
TTATTAGGTGCGCATTGTGA+TGG + chr4_2:47232939-47232958 Msa0603090:three_prime_UTR 40.0%
! CTGTTGCTTGATATGGAGTT+TGG + chr4_2:47233028-47233047 Msa0603090:three_prime_UTR 40.0%
TTGTAATGTGCATGCACTCT+AGG + chr4_2:47233117-47233136 Msa0603090:three_prime_UTR 40.0%
!! AAGTGGATTAATGAAGTGGG+AGG + chr4_2:47233175-47233194 Msa0603090:three_prime_UTR 40.0%
AACTCCAATGGTAGACCATT+TGG - chr4_2:47233607-47233626 None:intergenic 40.0%
ATGTTGGGATTCGAAATGCA+CGG + chr4_2:47233670-47233689 Msa0603090:three_prime_UTR 40.0%
TTAACTGCACTTCTCAACTG+TGG + chr4_2:47233708-47233727 Msa0603090:three_prime_UTR 40.0%
CCCCACACAATATAACTCTA+AGG - chr4_2:47233777-47233796 None:intergenic 40.0%
GCGTGGCTGTTAAAATTTAC+AGG + chr4_2:47233837-47233856 Msa0603090:three_prime_UTR 40.0%
GTATATGCCTCCCTATTTGT+GGG + chr4_2:47233865-47233884 Msa0603090:three_prime_UTR 40.0%
GTGTATCCTTTCCCACAAAT+AGG - chr4_2:47233879-47233898 None:intergenic 40.0%
AAAGTTAGGGTTTCGTCGAG+GGG - chr4_2:47229214-47229233 None:intergenic 45.0%
ATGGAGGAAGAGGAAGAAGA+AGG - chr4_2:47229245-47229264 None:intergenic 45.0%
TTGAGAGTTCAACGAGATGG+AGG - chr4_2:47229261-47229280 None:intergenic 45.0%
!! GTTCTTGATGATGTCGTCGA+GGG - chr4_2:47229316-47229335 None:intergenic 45.0%
!! TGTTCTTGATGATGTCGTCG+AGG - chr4_2:47229317-47229336 None:intergenic 45.0%
CGTGCTCCTTCTATTGAAAC+TGG + chr4_2:47229649-47229668 Msa0603090:CDS 45.0%
GGCGGGACTTATTAATCCAA+TGG - chr4_2:47230389-47230408 None:intergenic 45.0%
TGGATCAAGTTAGATGTGGC+GGG - chr4_2:47230406-47230425 None:intergenic 45.0%
AGTTCTATGGTGCGCAAATG+AGG - chr4_2:47230465-47230484 None:intergenic 45.0%
TGTAGCGTTGTTCATGCATC+TGG + chr4_2:47230598-47230617 Msa0603090:intron 45.0%
! AAAATCTTGAGGTGCTAGCC+AGG + chr4_2:47231079-47231098 Msa0603090:intron 45.0%
AGGCAGAACAGTGTAGTTGA+AGG - chr4_2:47231455-47231474 None:intergenic 45.0%
!! TCGAAGGTATCTTGTCCAGT+TGG + chr4_2:47231779-47231798 Msa0603090:intron 45.0%
AACGGCCAAATTAAGCCAAC+TGG - chr4_2:47231797-47231816 None:intergenic 45.0%
GGAACCAACATATCTACACC+TGG + chr4_2:47231977-47231996 Msa0603090:CDS 45.0%
TGCACCAGGTGTAGATATGT+TGG - chr4_2:47231984-47232003 None:intergenic 45.0%
CCAATGGCTGCATTTACAAC+AGG - chr4_2:47232010-47232029 None:intergenic 45.0%
CCTGTTGTAAATGCAGCCAT+TGG + chr4_2:47232007-47232026 Msa0603090:CDS 45.0%
CAAGCCAGTGAATACCTTTG+AGG - chr4_2:47232049-47232068 None:intergenic 45.0%
TGCAAACAAATTCTGGTCGC+TGG + chr4_2:47232429-47232448 Msa0603090:intron 45.0%
CACTCGCATCCATATACACA+GGG - chr4_2:47232468-47232487 None:intergenic 45.0%
ACACTCGCATCCATATACAC+AGG - chr4_2:47232469-47232488 None:intergenic 45.0%
GCAGAGTTGGAGAATTTCGA+GGG + chr4_2:47232694-47232713 Msa0603090:CDS 45.0%
! CAAGGCATTCGAAGAAATCG+AGG + chr4_2:47232732-47232751 Msa0603090:CDS 45.0%
ATTCGAAGAAATCGAGGACG+TGG + chr4_2:47232738-47232757 Msa0603090:CDS 45.0%
AGAAGATCTTGATGCTGAGC+TGG + chr4_2:47232836-47232855 Msa0603090:CDS 45.0%
!! TGAGCTGGAGAAGTATCATG+CGG + chr4_2:47232851-47232870 Msa0603090:CDS 45.0%
!!! GAGCCCTATGTTTTAGGGAA+GGG + chr4_2:47232987-47233006 Msa0603090:three_prime_UTR 45.0%
TGGATTAATGAAGTGGGAGG+TGG + chr4_2:47233178-47233197 Msa0603090:three_prime_UTR 45.0%
GGATTAATGAAGTGGGAGGT+GGG + chr4_2:47233179-47233198 Msa0603090:three_prime_UTR 45.0%
! TGCATTGATAGATGAGAGCG+CGG - chr4_2:47233207-47233226 None:intergenic 45.0%
!!! TTTTGGGATAGGGTTGTGGT+AGG - chr4_2:47233342-47233361 None:intergenic 45.0%
! GATTGTGCTGGTCAAGATTC+AGG + chr4_2:47233545-47233564 Msa0603090:three_prime_UTR 45.0%
!! GCTGGGAATGCTATTTCTGT+TGG - chr4_2:47233575-47233594 None:intergenic 45.0%
CAGAAATAGCATTCCCAGCT+CGG + chr4_2:47233576-47233595 Msa0603090:three_prime_UTR 45.0%
AGAAATAGCATTCCCAGCTC+GGG + chr4_2:47233577-47233596 Msa0603090:three_prime_UTR 45.0%
! TGTCACGGTGTTAACTCCAA+TGG - chr4_2:47233619-47233638 None:intergenic 45.0%
TGCACTTCTCAACTGTGGTT+GGG + chr4_2:47233713-47233732 Msa0603090:three_prime_UTR 45.0%
GGTATATGCCTCCCTATTTG+TGG + chr4_2:47233864-47233883 Msa0603090:three_prime_UTR 45.0%
ATCCTTTCCCACAAATAGGG+AGG - chr4_2:47233875-47233894 None:intergenic 45.0%
!! ATATATATAATCTTATAATA+AGG + chr4_2:47233400-47233419 Msa0603090:three_prime_UTR 5.0%
GTTCAACGAGATGGAGGAAG+AGG - chr4_2:47229255-47229274 None:intergenic 50.0%
! CATATCGAGTGCTGCAGACA+TGG - chr4_2:47229292-47229311 None:intergenic 50.0%
AGCGATTAACGGCACGGTTA+GGG - chr4_2:47229422-47229441 None:intergenic 50.0%
GTAAGGTGCGGAGCGATTAA+CGG - chr4_2:47229433-47229452 None:intergenic 50.0%
CAAGCTAGTTACCTTAGCGG+CGG - chr4_2:47229457-47229476 None:intergenic 50.0%
TGCAGATCAGCATGTAGCTG+CGG + chr4_2:47229600-47229619 Msa0603090:CDS 50.0%
GCACTATGAGACAGCAAGAC+AGG - chr4_2:47230248-47230267 None:intergenic 50.0%
! ATAGTGCGTGAGAGTATGCG+AGG + chr4_2:47230261-47230280 Msa0603090:intron 50.0%
! TGAGAGTATGCGAGGAGAGT+GGG + chr4_2:47230269-47230288 Msa0603090:intron 50.0%
! ATGCGAGGAGAGTGGGATTT+TGG + chr4_2:47230276-47230295 Msa0603090:intron 50.0%
CTATGGTGCGCAAATGAGGT+AGG - chr4_2:47230461-47230480 None:intergenic 50.0%
TGTAGTTGAAGGCCTGCCTA+AGG - chr4_2:47231444-47231463 None:intergenic 50.0%
!! GTTGGTGACTTGAAACGGCA+CGG + chr4_2:47231731-47231750 Msa0603090:CDS 50.0%
GGCGTTCATTATGACAGGAG+TGG + chr4_2:47231752-47231771 Msa0603090:CDS 50.0%
CCGTGAGAAGACTACTTCTG+CGG - chr4_2:47231879-47231898 None:intergenic 50.0%
CCGCAGAAGTAGTCTTCTCA+CGG + chr4_2:47231876-47231895 Msa0603090:CDS 50.0%
TTTACAACAGGAGCTGCACC+AGG - chr4_2:47231998-47232017 None:intergenic 50.0%
GGCAGAGTTGGAGAATTTCG+AGG + chr4_2:47232693-47232712 Msa0603090:CDS 50.0%
AGTTGGAGAATTTCGAGGGC+TGG + chr4_2:47232698-47232717 Msa0603090:CDS 50.0%
GTTGGAGAATTTCGAGGGCT+GGG + chr4_2:47232699-47232718 Msa0603090:CDS 50.0%
AGAAATCGAGGACGTGGAAG+AGG + chr4_2:47232744-47232763 Msa0603090:CDS 50.0%
!!! GGAGCCCTATGTTTTAGGGA+AGG + chr4_2:47232986-47233005 Msa0603090:three_prime_UTR 50.0%
!!! CTGCTTTTGGGATAGGGTTG+TGG - chr4_2:47233346-47233365 None:intergenic 50.0%
! CCATTTGGAATTCCCGAGCT+GGG - chr4_2:47233592-47233611 None:intergenic 50.0%
! ACCATTTGGAATTCCCGAGC+TGG - chr4_2:47233593-47233612 None:intergenic 50.0%
CTGCACTTCTCAACTGTGGT+TGG + chr4_2:47233712-47233731 Msa0603090:three_prime_UTR 50.0%
GCACTTCTCAACTGTGGTTG+GGG + chr4_2:47233714-47233733 Msa0603090:three_prime_UTR 50.0%
TACTTGGTTACAACGTGGCG+TGG + chr4_2:47233820-47233839 Msa0603090:three_prime_UTR 50.0%
TGCCTCCCTATTTGTGGGAA+AGG + chr4_2:47233870-47233889 Msa0603090:three_prime_UTR 50.0%
!! TCCTCTAGGGTTACCGGATC+CGG - chr4_2:47229349-47229368 None:intergenic 55.0%
ACGGTTAGGGATACGACGAG+CGG - chr4_2:47229409-47229428 None:intergenic 55.0%
GAGCGATTAACGGCACGGTT+AGG - chr4_2:47229423-47229442 None:intergenic 55.0%
GTTACCTTAGCGGCGGAGTA+AGG - chr4_2:47229450-47229469 None:intergenic 55.0%
TTTAGGCTCCGGAGACGACA+TGG + chr4_2:47229563-47229582 Msa0603090:intron 55.0%
TCATGCTGCCATGTCGTCTC+CGG - chr4_2:47229574-47229593 None:intergenic 55.0%
AGATCAGCATGTAGCTGCGG+CGG + chr4_2:47229603-47229622 Msa0603090:CDS 55.0%
! GTGAGAGTATGCGAGGAGAG+TGG + chr4_2:47230268-47230287 Msa0603090:intron 55.0%
GGCACGGCGTTCATTATGAC+AGG + chr4_2:47231747-47231766 Msa0603090:CDS 55.0%
TGACAGGAGTGGCAGATCGA+AGG + chr4_2:47231763-47231782 Msa0603090:CDS 55.0%
TCTGTCTTGAGCAGTGGGCA+AGG + chr4_2:47232672-47232691 Msa0603090:intron 55.0%
CTGCAGATACCTTCTCGTCG+CGG - chr4_2:47232818-47232837 None:intergenic 55.0%
!! GCTGGAGAAGTATCATGCGG+AGG + chr4_2:47232854-47232873 Msa0603090:CDS 55.0%
TAGGGTTGTGGTAGGAGTGG+CGG - chr4_2:47233334-47233353 None:intergenic 55.0%
GGATAGGGTTGTGGTAGGAG+TGG - chr4_2:47233337-47233356 None:intergenic 55.0%
! GGGAGTACGTCTTTCCTGAC+TGG + chr4_2:47233456-47233475 Msa0603090:three_prime_UTR 55.0%
CATCTGTTCTGCTTGCTCCG+CGG + chr4_2:47233517-47233536 Msa0603090:three_prime_UTR 55.0%
ACCAGCACAATCAGAGTCCG+CGG - chr4_2:47233537-47233556 None:intergenic 55.0%
CCCAGCTCGGGAATTCCAAA+TGG + chr4_2:47233589-47233608 Msa0603090:three_prime_UTR 55.0%
TCCGGATCCGGTAACCCTAG+AGG + chr4_2:47229345-47229364 Msa0603090:CDS 60.0%
GGATCCGGTAACCCTAGAGG+AGG + chr4_2:47229348-47229367 Msa0603090:CDS 60.0%
!! ACGGCCTCCTCTAGGGTTAC+CGG - chr4_2:47229355-47229374 None:intergenic 60.0%
! GTCTGGAACGGCCTCCTCTA+GGG - chr4_2:47229362-47229381 None:intergenic 60.0%
CGGTTAGGGATACGACGAGC+GGG - chr4_2:47229408-47229427 None:intergenic 60.0%
GTGCGGAGCGATTAACGGCA+CGG - chr4_2:47229428-47229447 None:intergenic 60.0%
CTTAGCGGCGGAGTAAGGTG+CGG - chr4_2:47229445-47229464 None:intergenic 60.0%
GCGTATCCAGCAGCTCAAGG+TGG + chr4_2:47229625-47229644 Msa0603090:CDS 60.0%
TGCACTCAAGATGTGGCCCG+TGG + chr4_2:47230543-47230562 Msa0603090:intron 60.0%
GCACCTAGCCTGTGTGCCTT+AGG + chr4_2:47231425-47231444 Msa0603090:intron 60.0%
CTGCCTAAGGCACACAGGCT+AGG - chr4_2:47231431-47231450 None:intergenic 60.0%
CTAGCCTGTGTGCCTTAGGC+AGG + chr4_2:47231429-47231448 Msa0603090:intron 60.0%
AAGGCCTGCCTAAGGCACAC+AGG - chr4_2:47231436-47231455 None:intergenic 60.0%
AGCAGTGGGCAAGGCAGAGT+TGG + chr4_2:47232681-47232700 Msa0603090:intron 60.0%
GGAGAATTTCGAGGGCTGGG+AGG + chr4_2:47232702-47232721 Msa0603090:CDS 60.0%
TTTCGAGGGCTGGGAGGAAG+AGG + chr4_2:47232708-47232727 Msa0603090:CDS 60.0%
CGAGGACGTGGAAGAGGTAG+CGG + chr4_2:47232750-47232769 Msa0603090:CDS 60.0%
AGGGTTGTGGTAGGAGTGGC+GGG - chr4_2:47233333-47233352 None:intergenic 60.0%
TCCGCGGACTCTGATTGTGC+TGG + chr4_2:47233533-47233552 Msa0603090:three_prime_UTR 60.0%
! GGTCTGGAACGGCCTCCTCT+AGG - chr4_2:47229363-47229382 None:intergenic 65.0%
AAGCGGGTGCGGGTCTGGAA+CGG - chr4_2:47229374-47229393 None:intergenic 65.0%
CGCACCTTACTCCGCCGCTA+AGG + chr4_2:47229443-47229462 Msa0603090:CDS 65.0%
GCGGCGTATCCAGCAGCTCA+AGG + chr4_2:47229622-47229641 Msa0603090:CDS 65.0%
GCACGACCACCTTGAGCTGC+TGG - chr4_2:47229634-47229653 None:intergenic 65.0%
GGGCTGGGAGGAAGAGGTCA+AGG + chr4_2:47232714-47232733 Msa0603090:CDS 65.0%
! GGACGTGGAAGAGGTAGCGG+TGG + chr4_2:47232753-47232772 Msa0603090:CDS 65.0%
TGGTAGAGGCCGCGACGAGA+AGG + chr4_2:47232806-47232825 Msa0603090:CDS 65.0%
TCCAGACCCGCACCCGCTTC+CGG + chr4_2:47229375-47229394 Msa0603090:CDS 70.0%
TCCAGGTCCGGAAGCGGGTG+CGG - chr4_2:47229385-47229404 None:intergenic 70.0%
AGCGGGTCCAGGTCCGGAAG+CGG - chr4_2:47229391-47229410 None:intergenic 70.0%
ACGACGAGCGGGTCCAGGTC+CGG - chr4_2:47229397-47229416 None:intergenic 70.0%
GGGATACGACGAGCGGGTCC+AGG - chr4_2:47229402-47229421 None:intergenic 70.0%
! AGAGGTAGCGGTGGACCCCG+TGG + chr4_2:47232762-47232781 Msa0603090:CDS 70.0%
TCCACCGCGACCACCACCAC+GGG - chr4_2:47232781-47232800 None:intergenic 70.0%
CTCCACCGCGACCACCACCA+CGG - chr4_2:47232782-47232801 None:intergenic 70.0%
CGCGGTGGAGGTCGTGGTAG+AGG + chr4_2:47232792-47232811 Msa0603090:CDS 70.0%
TCCGGAAGCGGGTGCGGGTC+TGG - chr4_2:47229379-47229398 None:intergenic 75.0%
CCAGGTCCGGAAGCGGGTGC+GGG - chr4_2:47229384-47229403 None:intergenic 75.0%
GCGGGTCCAGGTCCGGAAGC+GGG - chr4_2:47229390-47229409 None:intergenic 75.0%
! GGTAGCGGTGGACCCCGTGG+TGG + chr4_2:47232765-47232784 Msa0603090:CDS 75.0%
AGCGGTGGACCCCGTGGTGG+TGG + chr4_2:47232768-47232787 Msa0603090:CDS 75.0%
!! GGACCCCGTGGTGGTGGTCG+CGG + chr4_2:47232774-47232793 Msa0603090:CDS 75.0%
CCACCGCGACCACCACCACG+GGG - chr4_2:47232780-47232799 None:intergenic 75.0%
!! CGTGGTGGTGGTCGCGGTGG+AGG + chr4_2:47232780-47232799 Msa0603090:CDS 75.0%
GGTGGTCGCGGTGGAGGTCG+TGG + chr4_2:47232786-47232805 Msa0603090:CDS 75.0%
! CCCGCACCCGCTTCCGGACC+TGG + chr4_2:47229381-47229400 Msa0603090:CDS 80.0%
!!! CCCCGTGGTGGTGGTCGCGG+TGG + chr4_2:47232777-47232796 Msa0603090:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 47229159 47233926 47229159 ID=Msa0603090;Name=Msa0603090
chr4_2 mRNA 47229159 47233926 47229159 ID=Msa0603090-mRNA-1;Parent=Msa0603090;Name=Msa0603090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|5|1033|263
chr4_2 exon 47229159 47229464 47229159 ID=Msa0603090-mRNA-1:exon:10765;Parent=Msa0603090-mRNA-1
chr4_2 exon 47229568 47229726 47229568 ID=Msa0603090-mRNA-1:exon:10766;Parent=Msa0603090-mRNA-1
chr4_2 exon 47231716 47231784 47231716 ID=Msa0603090-mRNA-1:exon:10767;Parent=Msa0603090-mRNA-1
chr4_2 exon 47231872 47232053 47231872 ID=Msa0603090-mRNA-1:exon:10768;Parent=Msa0603090-mRNA-1
chr4_2 exon 47232686 47233926 47232686 ID=Msa0603090-mRNA-1:exon:10769;Parent=Msa0603090-mRNA-1
chr4_2 five_prime_UTR 47229159 47229290 47229159 ID=Msa0603090-mRNA-1:five_prime_utr;Parent=Msa0603090-mRNA-1
chr4_2 CDS 47229291 47229464 47229291 ID=Msa0603090-mRNA-1:cds;Parent=Msa0603090-mRNA-1
chr4_2 CDS 47229568 47229726 47229568 ID=Msa0603090-mRNA-1:cds;Parent=Msa0603090-mRNA-1
chr4_2 CDS 47231716 47231784 47231716 ID=Msa0603090-mRNA-1:cds;Parent=Msa0603090-mRNA-1
chr4_2 CDS 47231872 47232053 47231872 ID=Msa0603090-mRNA-1:cds;Parent=Msa0603090-mRNA-1
chr4_2 CDS 47232686 47232893 47232686 ID=Msa0603090-mRNA-1:cds;Parent=Msa0603090-mRNA-1
chr4_2 three_prime_UTR 47232894 47233926 47232894 ID=Msa0603090-mRNA-1:three_prime_utr;Parent=Msa0603090-mRNA-1
Gene Sequence

>Msa0603090

ATGTCTGCAGCACTCGATATGACCCTCGACGACATCATCAAGAACAACAAAAAATCCGGATCCGGTAACCCTAGAGGAGGCCGTTCCAGACCCGCACCCGCTTCCGGACCTGGACCCGCTCGTCGTATCCCTAACCGTGCCGTTAATCGCTCCGCACCTTACTCCGCCGCTAAGGCTCCGGAGACGACATGGCAGCATGATTTGTATGCAGATCAGCATGTAGCTGCGGCGGCGTATCCAGCAGCTCAAGGTGGTCGTGCTCCTTCTATTGAAACTGGAACCAAGCTCTATATTTCTAATTTGGATTACGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCACGGCGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACCGCAGAAGTAGTCTTCTCACGGAGACAAGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAGCCAATGAAGATAGAGATTGTTGGAACCAACATATCTACACCTGGTGCAGCTCCTGTTGTAAATGCAGCCATTGGAAATTTTAATGGAATTCCTCAAAGTGGGCAAGGCAGAGTTGGAGAATTTCGAGGGCTGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGACCCCGTGGTGGTGGTCGCGGTGGAGGTCGTGGTAGAGGCCGCGACGAGAAGGTATCTGCAGAAGATCTTGATGCTGAGCTGGAGAAGTATCATGCGGAGGCCATGCAAATAAACTGA
Protein sequence

>Msa0603090

MSAALDMTLDDIIKNNKKSGSGNPRGGRSRPAPASGPGPARRIPNRAVNRSAPYSAAKAPETTWQHDLYADQHVAAAAYPAAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNAAIGNFNGIPQSGQGRVGEFRGLGGRGQGIRRNRGRGRGSGGPRGGGRGGGRGRGRDEKVSAEDLDAELEKYHAEAMQIN*