AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1403940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403940 MtrunA17_Chr3g0127451 98.851 87 1 0 1 87 1 87 3.12e-61 183
Msa1403940 MtrunA17_Chr8g0346311 68.539 89 28 0 1 89 1 89 2.90e-43 138
Msa1403940 MtrunA17_Chr4g0010061 65.116 86 30 0 1 86 14 99 6.07e-40 129
Msa1403940 MtrunA17_Chr7g0276081 64.706 85 30 0 2 86 3 87 1.66e-39 128
Msa1403940 MtrunA17_Chr5g0419651 63.415 82 29 1 7 88 7 87 6.58e-35 116
Msa1403940 MtrunA17_Chr3g0134591 43.373 83 47 0 3 85 2 84 9.38e-25 91.3
Msa1403940 MtrunA17_Chr3g0115151 39.394 99 58 2 1 99 457 553 1.12e-18 79.7
Msa1403940 MtrunA17_Chr3g0115131 45.333 75 40 1 6 80 517 590 2.62e-17 75.9
Msa1403940 MtrunA17_Chr5g0424491 40.000 80 47 1 1 80 513 591 2.33e-16 73.2
Msa1403940 MtrunA17_Chr6g0486891 42.857 70 39 1 12 81 50 118 2.91e-16 68.6
Msa1403940 MtrunA17_Chr4g0019781 34.568 81 53 0 3 83 137 217 8.18e-14 64.3
Msa1403940 MtrunA17_Chr8g0361931 38.356 73 44 1 6 78 7 78 6.16e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403940 AT5G53560.1 82.558 86 15 0 1 86 1 86 1.38e-50 156
Msa1403940 AT2G32720.1 66.279 86 29 0 1 86 1 86 3.78e-43 137
Msa1403940 AT5G48810.1 60.674 89 35 0 1 89 1 89 4.41e-40 130
Msa1403940 AT1G26340.1 58.025 81 34 0 6 86 6 86 4.42e-35 117
Msa1403940 AT2G46650.1 58.537 82 34 0 7 88 4 85 8.64e-33 111
Msa1403940 AT2G32720.2 72.308 65 18 0 22 86 22 86 8.39e-32 108
Msa1403940 AT1G37130.1 42.500 80 45 1 1 80 538 616 9.27e-19 80.5
Msa1403940 AT1G60660.1 43.421 76 42 1 5 80 46 120 5.43e-18 73.6
Msa1403940 AT1G77760.1 40.000 80 47 1 1 80 541 619 4.89e-17 75.5
Msa1403940 AT3G61580.1 38.158 76 46 1 3 78 5 79 4.87e-13 63.9
Msa1403940 AT5G09680.3 31.818 88 60 0 3 90 170 257 7.73e-12 60.1
Msa1403940 AT5G09680.1 31.818 88 60 0 3 90 124 211 1.38e-11 58.9
Msa1403940 AT5G09680.2 31.818 88 60 0 3 90 124 211 1.38e-11 58.9
Msa1403940 AT2G46210.1 38.571 70 42 1 9 78 11 79 2.98e-11 58.9

Find 61 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCACAATCCAACATTATT+AGG 0.187332 tig0022984:+87099 None:intergenic
TCAAATCTCTTCTTCACTTT+GGG 0.187989 tig0022984:+89774 None:intergenic
CCGGGATGATCCTCCATAAA+AGG 0.201719 tig0022984:+87659 None:intergenic
CCCCATAAACAGGAAAATTA+AGG 0.220364 tig0022984:+86972 None:intergenic
CCTGGTGCCTCTCCTGATAT+TGG 0.232035 tig0022984:-87332 Msa1403940:three_prime_UTR
GACAGTGTTTAGTTTCTTCT+TGG 0.292754 tig0022984:-87199 Msa1403940:three_prime_UTR
CTGGTGCCTCTCCTGATATT+GGG 0.297310 tig0022984:-87331 Msa1403940:three_prime_UTR
AAGAAGGAACTACTCTTTCT+TGG 0.318516 tig0022984:+87282 None:intergenic
GAGAATAAGCCAGCAATCTT+TGG 0.319930 tig0022984:+89383 None:intergenic
GTTTAGCATCTTTGTTTCAT+TGG 0.320261 tig0022984:-87063 Msa1403940:three_prime_UTR
GTCAAATCTCTTCTTCACTT+TGG 0.341887 tig0022984:+89773 None:intergenic
GTGGAACGTAGGTGCGCTTA+AGG 0.375400 tig0022984:+87416 None:intergenic
CACTTTGCATCCCCATAAAC+AGG 0.379042 tig0022984:+86962 None:intergenic
GATTGCTGGCTTATTCTCTC+TGG 0.386144 tig0022984:-89378 Msa1403940:CDS
CAACTTTCTGGTAATGGTAC+TGG 0.390866 tig0022984:-87141 Msa1403940:three_prime_UTR
TCCCACATCTTCAAAATCAT+TGG 0.392408 tig0022984:+87506 None:intergenic
GGTGTCTTGAGCATTGAAAC+TGG 0.406699 tig0022984:-87178 Msa1403940:three_prime_UTR
TCATCGAAAGTGTGAAGCTT+TGG 0.412470 tig0022984:+89426 None:intergenic
CAAAGGCTAAGCCCAATATC+AGG 0.426178 tig0022984:+87320 None:intergenic
GGTCTGTTAGCTATTTATAG+AGG 0.431918 tig0022984:-87233 Msa1403940:three_prime_UTR
CCCATAAACAGGAAAATTAA+GGG 0.432212 tig0022984:+86973 None:intergenic
TCTCTTCTTCACTTTGGGGT+TGG 0.435970 tig0022984:+89779 None:intergenic
CAAATCTCTTCTTCACTTTG+GGG 0.437199 tig0022984:+89775 None:intergenic
AATTACCACTTCCGGTCCTT+GGG 0.440955 tig0022984:+89719 None:intergenic
GAATTACCACTTCCGGTCCT+TGG 0.443825 tig0022984:+89718 None:intergenic
CGGGATGATCCTCCATAAAA+GGG 0.446544 tig0022984:+87660 None:intergenic
GAGGTTCTGTTGTCTGCAAC+AGG 0.466883 tig0022984:-87629 Msa1403940:intron
ACAACAAGACCAAAGATTGC+TGG 0.472357 tig0022984:-89392 Msa1403940:CDS
ACAAATTCCGAAGTCTTGTC+CGG 0.476643 tig0022984:+87373 None:intergenic
CAAGAGGGAATTACCACTTC+CGG 0.485709 tig0022984:+89711 None:intergenic
ATCATATTGCACCCTTGTGA+GGG 0.492456 tig0022984:-87255 Msa1403940:three_prime_UTR
TGATTCTGCTAGAGAAATGA+TGG 0.506307 tig0022984:-87478 Msa1403940:CDS
CAACAGAACCTCATCACCTC+CGG 0.513023 tig0022984:+87640 None:intergenic
GCGCTTAAGGGAACAGTGGA+TGG 0.513300 tig0022984:+87429 None:intergenic
TGGAACGTAGGTGCGCTTAA+GGG 0.517766 tig0022984:+87417 None:intergenic
CTGGCTTATTCTCTCTGGAA+AGG 0.542076 tig0022984:-89373 Msa1403940:intron
CATCATATTGCACCCTTGTG+AGG 0.542934 tig0022984:-87256 Msa1403940:three_prime_UTR
AATCTCCCAAGGACCGGAAG+TGG 0.548565 tig0022984:-89724 Msa1403940:intron
CCAATATCAGGAGAGGCACC+AGG 0.552438 tig0022984:+87332 None:intergenic
TGCAACTAGATTATTGTCCC+AGG 0.555593 tig0022984:-86929 None:intergenic
GTGCAATATGATGATAAAGA+AGG 0.560027 tig0022984:+87266 None:intergenic
ATTTATAGAGGGTCATTCAA+AGG 0.568496 tig0022984:-87221 Msa1403940:three_prime_UTR
ACTCAGAATCTCCCAAGGAC+CGG 0.572963 tig0022984:-89730 Msa1403940:five_prime_UTR
GTCTGTTAGCTATTTATAGA+GGG 0.573849 tig0022984:-87232 Msa1403940:three_prime_UTR
GGATCATCCCGGAGGTGATG+AGG 0.581222 tig0022984:-87648 Msa1403940:CDS
AACAGAACCTCATCACCTCC+GGG 0.588122 tig0022984:+87641 None:intergenic
GTACAATCCGGACAAGACTT+CGG 0.598055 tig0022984:-87380 Msa1403940:CDS
TCAGCAATCTCAGTACAATC+CGG 0.604833 tig0022984:-87392 Msa1403940:CDS
ATGATGGACAAATACTACAT+TGG 0.610366 tig0022984:-87462 Msa1403940:CDS
TAGCTAACAGACCCCTCACA+AGG 0.620015 tig0022984:+87243 None:intergenic
TTGTACTGAGATTGCTGAGG+TGG 0.630347 tig0022984:+87397 None:intergenic
GGTGTAGTTTCTGACAACAA+AGG 0.643712 tig0022984:+87303 None:intergenic
TCATATTGCACCCTTGTGAG+GGG 0.653808 tig0022984:-87254 Msa1403940:three_prime_UTR
TCATCACTCAGAATCTCCCA+AGG 0.658723 tig0022984:-89735 Msa1403940:five_prime_UTR
GCTAAGCCCAATATCAGGAG+AGG 0.665710 tig0022984:+87325 None:intergenic
GGGATGATCCTCCATAAAAG+GGG 0.676795 tig0022984:+87661 None:intergenic
AGCTAACAGACCCCTCACAA+GGG 0.690074 tig0022984:+87244 None:intergenic
AGGTGCGCTTAAGGGAACAG+TGG 0.703214 tig0022984:+87425 None:intergenic
GGATTGTACTGAGATTGCTG+AGG 0.741733 tig0022984:+87394 None:intergenic
TTTATGGAGGATCATCCCGG+AGG 0.751420 tig0022984:-87656 Msa1403940:CDS
AGATTGCTGAGGTGGAACGT+AGG 0.774863 tig0022984:+87405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTAGAAAAATTTATATT+TGG + tig0022984:88948-88967 None:intergenic 10.0%
!! ATCTAAAGAATCAATAAAAA+GGG + tig0022984:87166-87185 None:intergenic 15.0%
!!! ATTCAGATAAAATTAATTTG+TGG - tig0022984:87198-87217 Msa1403940:three_prime_UTR 15.0%
!!! TTCAGATAAAATTAATTTGT+GGG - tig0022984:87199-87218 Msa1403940:three_prime_UTR 15.0%
!! AGTTAAAATATTAGTACATA+TGG + tig0022984:88170-88189 None:intergenic 15.0%
!!! TATATTACATTTGTATTTTG+TGG - tig0022984:88340-88359 Msa1403940:intron 15.0%
!!! ATATTACATTTGTATTTTGT+GGG - tig0022984:88341-88360 Msa1403940:intron 15.0%
!! ATAAATTAATAACCCATTAT+AGG + tig0022984:88568-88587 None:intergenic 15.0%
!! ATAGTACAATATAATCAATA+TGG + tig0022984:89158-89177 None:intergenic 15.0%
!! TCTAAAGAATCAATAAAAAG+GGG + tig0022984:87165-87184 None:intergenic 20.0%
!! GATCTAAAGAATCAATAAAA+AGG + tig0022984:87167-87186 None:intergenic 20.0%
!! ACTACAAATGAATTACAATT+AGG + tig0022984:87572-87591 None:intergenic 20.0%
!! CAACATTCAATCTTAAAATT+AGG + tig0022984:87643-87662 None:intergenic 20.0%
!! TTGAATTATTCAAATCTGAA+CGG - tig0022984:87929-87948 Msa1403940:intron 20.0%
!! GAATAAGAAGAATGAATATT+AGG - tig0022984:88289-88308 Msa1403940:intron 20.0%
!!! TATTACATTTGTATTTTGTG+GGG - tig0022984:88342-88361 Msa1403940:intron 20.0%
!!! TTATTGGTATCCTTTTAAAA+TGG - tig0022984:88496-88515 Msa1403940:intron 20.0%
!!! TATAATGTTTTACAACTTTC+TGG - tig0022984:89559-89578 Msa1403940:intron 20.0%
!!! AGTGATCCTTTAAAAAAAAA+AGG + tig0022984:89687-89706 None:intergenic 20.0%
! TTCCATGATTGATTATTCTT+CGG - tig0022984:87387-87406 Msa1403940:CDS 25.0%
!!! AAGATGAAGTTCAAGTTTTT+GGG - tig0022984:87490-87509 Msa1403940:CDS 25.0%
!! TTTAAGATTGAATGTTGTTG+AGG - tig0022984:87646-87665 Msa1403940:CDS 25.0%
!!! GTAGACAGATTACATTTTTT+AGG - tig0022984:87733-87752 Msa1403940:intron 25.0%
! TACAATAAGATCCAAACTTA+AGG + tig0022984:87904-87923 None:intergenic 25.0%
!! CGATGACTCATTTTATTATT+TGG + tig0022984:88001-88020 None:intergenic 25.0%
! TTTAACTGTCACGTAAAATA+TGG - tig0022984:88183-88202 Msa1403940:intron 25.0%
! TAAGTTAATCTACCTCTTAT+TGG - tig0022984:88480-88499 Msa1403940:intron 25.0%
! TTTAAAAGGATACCAATAAG+AGG + tig0022984:88495-88514 None:intergenic 25.0%
! AAGCATCTAAGCTATATAAA+AGG + tig0022984:88728-88747 None:intergenic 25.0%
!! AACGTTTAAAATAGTGAAAG+TGG + tig0022984:88833-88852 None:intergenic 25.0%
! AAGAACAAATTATCGTTAAG+AGG + tig0022984:89006-89025 None:intergenic 25.0%
! ATTTGTTCTTCAATCATGTT+AGG - tig0022984:89016-89035 Msa1403940:intron 25.0%
! TATGCTTATATCATTCGAAA+AGG - tig0022984:89106-89125 Msa1403940:intron 25.0%
! ATGCTTATATCATTCGAAAA+GGG - tig0022984:89107-89126 Msa1403940:intron 25.0%
! TACTATACTGTATCAATTAC+AGG - tig0022984:89172-89191 Msa1403940:intron 25.0%
! ACTATACTGTATCAATTACA+GGG - tig0022984:89173-89192 Msa1403940:intron 25.0%
! ACTGAAAAACCTAATAATGT+TGG - tig0022984:89604-89623 Msa1403940:intron 25.0%
! ATTCACAATCCAACATTATT+AGG + tig0022984:89616-89635 None:intergenic 25.0%
!!! CTCAAGCCTTTTTTTTTTAA+AGG - tig0022984:89678-89697 Msa1403940:intron 25.0%
TCAAATCTCTTCTTCACTTT+GGG + tig0022984:86941-86960 None:intergenic 30.0%
TTTGAAGGGAAAAAACAAGA+GGG + tig0022984:87019-87038 None:intergenic 30.0%
ATTTGAAGGGAAAAAACAAG+AGG + tig0022984:87020-87039 None:intergenic 30.0%
GGAAAAGAGAAGAATTTGAA+GGG + tig0022984:87033-87052 None:intergenic 30.0%
TAGAAAAGAATCGATGCAAA+GGG + tig0022984:87054-87073 None:intergenic 30.0%
TTAGAAAAGAATCGATGCAA+AGG + tig0022984:87055-87074 None:intergenic 30.0%
!!! GGTTTGACTTGAATTTTTCT+GGG - tig0022984:87220-87239 Msa1403940:three_prime_UTR 30.0%
TGGCAGTGAAAGAAAAAAAA+TGG - tig0022984:87255-87274 Msa1403940:three_prime_UTR 30.0%
TTCCGAAGAATAATCAATCA+TGG + tig0022984:87392-87411 None:intergenic 30.0%
!! GAAGATGAAGTTCAAGTTTT+TGG - tig0022984:87489-87508 Msa1403940:CDS 30.0%
TGCATGTTACATATATTTCC+TGG - tig0022984:87517-87536 Msa1403940:CDS 30.0%
TCAGTGTGGTTAACAAATTA+TGG - tig0022984:87691-87710 Msa1403940:intron 30.0%
AATAAGATCCAAACTTAAGG+TGG + tig0022984:87901-87920 None:intergenic 30.0%
ATTCATTCTTCTTACACGTT+CGG + tig0022984:88273-88292 None:intergenic 30.0%
!!! TTGGTATCCTTTTAAAATGG+AGG - tig0022984:88499-88518 Msa1403940:intron 30.0%
!!! TGGTATCCTTTTAAAATGGA+GGG - tig0022984:88500-88519 Msa1403940:intron 30.0%
AATAACCCATTATAGGAAGA+CGG + tig0022984:88561-88580 None:intergenic 30.0%
TAAAGAATCAAACTGTGGAA+AGG + tig0022984:88604-88623 None:intergenic 30.0%
AAGGATAAAGAATCAAACTG+TGG + tig0022984:88609-88628 None:intergenic 30.0%
GCTATATAAAAGGAAGATTG+AGG + tig0022984:88718-88737 None:intergenic 30.0%
TATAGCTTAGATGCTTTCAT+TGG - tig0022984:88732-88751 Msa1403940:intron 30.0%
TCTTATAGGAAGATAGGTTA+GGG + tig0022984:88777-88796 None:intergenic 30.0%
CTAATGTCTTATAGGAAGAT+AGG + tig0022984:88783-88802 None:intergenic 30.0%
AATTAGAATAGCCTCACAAT+TGG + tig0022984:88873-88892 None:intergenic 30.0%
!! AACCAATGATTTTGAAGATG+TGG - tig0022984:89204-89223 Msa1403940:intron 30.0%
!! ACCAATGATTTTGAAGATGT+GGG - tig0022984:89205-89224 Msa1403940:intron 30.0%
!! ATGATGGACAAATACTACAT+TGG - tig0022984:89250-89269 Msa1403940:intron 30.0%
GTGCAATATGATGATAAAGA+AGG + tig0022984:89449-89468 None:intergenic 30.0%
GTCTGTTAGCTATTTATAGA+GGG - tig0022984:89480-89499 Msa1403940:intron 30.0%
ATTTATAGAGGGTCATTCAA+AGG - tig0022984:89491-89510 Msa1403940:intron 30.0%
!! GTTTTACAACTTTCTGGTAA+TGG - tig0022984:89565-89584 Msa1403940:intron 30.0%
! GTTTAGCATCTTTGTTTCAT+TGG - tig0022984:89649-89668 Msa1403940:intron 30.0%
! ACCCTTAATTTTCCTGTTTA+TGG - tig0022984:89738-89757 Msa1403940:five_prime_UTR 30.0%
CCCATAAACAGGAAAATTAA+GGG + tig0022984:89742-89761 None:intergenic 30.0%
! CCCTTAATTTTCCTGTTTAT+GGG - tig0022984:89739-89758 Msa1403940:five_prime_UTR 30.0%
! CCTTAATTTTCCTGTTTATG+GGG - tig0022984:89740-89759 Msa1403940:five_prime_UTR 30.0%
CAAATCTCTTCTTCACTTTG+GGG + tig0022984:86940-86959 None:intergenic 35.0%
GTCAAATCTCTTCTTCACTT+TGG + tig0022984:86942-86961 None:intergenic 35.0%
GGGAAAAGAGAAGAATTTGA+AGG + tig0022984:87034-87053 None:intergenic 35.0%
!!! GGGTTTGACTTGAATTTTTC+TGG - tig0022984:87219-87238 Msa1403940:three_prime_UTR 35.0%
!! TTTCTGGGTCTTTGATTTTG+TGG - tig0022984:87235-87254 Msa1403940:three_prime_UTR 35.0%
TTTGGTCATCTATGAGTAAG+AGG + tig0022984:87983-88002 None:intergenic 35.0%
CATGCAAAATTACTGGTGTT+AGG + tig0022984:88043-88062 None:intergenic 35.0%
TCTCTAGCATGCAAAATTAC+TGG + tig0022984:88050-88069 None:intergenic 35.0%
! TAATTTTGCATGCTAGAGAG+TGG - tig0022984:88051-88070 Msa1403940:intron 35.0%
GAGTAGAAGAATATAGCATC+TGG - tig0022984:88076-88095 Msa1403940:intron 35.0%
ACGACTAGTAATGCACATAA+AGG + tig0022984:88133-88152 None:intergenic 35.0%
TTCATTCTTCTTACACGTTC+GGG + tig0022984:88272-88291 None:intergenic 35.0%
!!! TATCCTTTTAAAATGGAGGG+AGG - tig0022984:88503-88522 Msa1403940:intron 35.0%
! TTTCCTCCCTCCATTTTAAA+AGG + tig0022984:88509-88528 None:intergenic 35.0%
AAAATGGAGGGAGGAAAAAA+AGG - tig0022984:88512-88531 Msa1403940:intron 35.0%
ATAAACCCGTCTTCCTATAA+TGG - tig0022984:88552-88571 Msa1403940:intron 35.0%
TAAACCCGTCTTCCTATAAT+GGG - tig0022984:88553-88572 Msa1403940:intron 35.0%
ATAACCCATTATAGGAAGAC+GGG + tig0022984:88560-88579 None:intergenic 35.0%
! TTAGTCAAATATGCTCTGAG+AGG - tig0022984:88685-88704 Msa1403940:intron 35.0%
CTTATAGGAAGATAGGTTAG+GGG + tig0022984:88776-88795 None:intergenic 35.0%
GTCTTATAGGAAGATAGGTT+AGG + tig0022984:88778-88797 None:intergenic 35.0%
! TCGACTAGCTAATGTCTTAT+AGG + tig0022984:88791-88810 None:intergenic 35.0%
TCCCACATCTTCAAAATCAT+TGG + tig0022984:89209-89228 None:intergenic 35.0%
TGATTCTGCTAGAGAAATGA+TGG - tig0022984:89234-89253 Msa1403940:intron 35.0%
AAGAAGGAACTACTCTTTCT+TGG + tig0022984:89433-89452 None:intergenic 35.0%
GGTCTGTTAGCTATTTATAG+AGG - tig0022984:89479-89498 Msa1403940:intron 35.0%
! GACAGTGTTTAGTTTCTTCT+TGG - tig0022984:89513-89532 Msa1403940:intron 35.0%
CCCCATAAACAGGAAAATTA+AGG + tig0022984:89743-89762 None:intergenic 35.0%
! TCATCGAAAGTGTGAAGCTT+TGG + tig0022984:87289-87308 None:intergenic 40.0%
ACAACAAGACCAAAGATTGC+TGG - tig0022984:87320-87339 Msa1403940:three_prime_UTR 40.0%
GAGAATAAGCCAGCAATCTT+TGG + tig0022984:87332-87351 None:intergenic 40.0%
ATGCTATGTCTAGATCAGTG+TGG - tig0022984:87677-87696 Msa1403940:CDS 40.0%
GTCTACAAGTACAGAAGAAC+AGG + tig0022984:87719-87738 None:intergenic 40.0%
ACAAACGAAGCATGTCATGT+AGG + tig0022984:87872-87891 None:intergenic 40.0%
AAGATCCAAACTTAAGGTGG+TGG + tig0022984:87898-87917 None:intergenic 40.0%
AGATAGATCTCAAGATCTGC+AGG + tig0022984:88422-88441 None:intergenic 40.0%
ATCTGATGTTTGATGCCATG+TGG - tig0022984:88438-88457 Msa1403940:intron 40.0%
TCTGATGTTTGATGCCATGT+GGG - tig0022984:88439-88458 Msa1403940:intron 40.0%
! ATAGGAAGACGGGTTTATGA+AGG + tig0022984:88550-88569 None:intergenic 40.0%
AACTGTGGAAAGGAAGAGTA+TGG + tig0022984:88594-88613 None:intergenic 40.0%
CTAGTCGAAAATCTAGCAGA+AGG - tig0022984:88803-88822 Msa1403940:intron 40.0%
! ATGGTGCTCTGCATTTTTCA+GGG + tig0022984:88896-88915 None:intergenic 40.0%
! ATGCAGAGCACCATGTATAT+TGG - tig0022984:88902-88921 Msa1403940:intron 40.0%
! ACCATGTATATTGGCCTGAA+TGG - tig0022984:88911-88930 Msa1403940:intron 40.0%
ACCATTCAGGCCAATATACA+TGG + tig0022984:88915-88934 None:intergenic 40.0%
TCAGCAATCTCAGTACAATC+CGG - tig0022984:89320-89339 Msa1403940:intron 40.0%
! ACAAATTCCGAAGTCTTGTC+CGG + tig0022984:89342-89361 None:intergenic 40.0%
! GATCAAGATTTTGCAGTTCC+TGG - tig0022984:89362-89381 Msa1403940:intron 40.0%
GGTGTAGTTTCTGACAACAA+AGG + tig0022984:89412-89431 None:intergenic 40.0%
ATCATATTGCACCCTTGTGA+GGG - tig0022984:89457-89476 Msa1403940:intron 40.0%
!! CAACTTTCTGGTAATGGTAC+TGG - tig0022984:89571-89590 Msa1403940:intron 40.0%
!! TCTCTTCTTCACTTTGGGGT+TGG + tig0022984:86936-86955 None:intergenic 45.0%
TCATCACTCAGAATCTCCCA+AGG - tig0022984:86977-86996 Msa1403940:three_prime_UTR 45.0%
AATTACCACTTCCGGTCCTT+GGG + tig0022984:86996-87015 None:intergenic 45.0%
CAAGAGGGAATTACCACTTC+CGG + tig0022984:87004-87023 None:intergenic 45.0%
!! GATTGCTGGCTTATTCTCTC+TGG - tig0022984:87334-87353 Msa1403940:three_prime_UTR 45.0%
! CTGGCTTATTCTCTCTGGAA+AGG - tig0022984:87339-87358 Msa1403940:three_prime_UTR 45.0%
ACATGCAATGCACAAGATCC+AGG + tig0022984:87538-87557 None:intergenic 45.0%
GTCAACCACCACCTTAAGTT+TGG - tig0022984:87890-87909 Msa1403940:intron 45.0%
GTGCATTACTAGTCGTGTAC+TGG - tig0022984:88137-88156 Msa1403940:intron 45.0%
CTGCTCGCTTATGAAAGGTA+TGG + tig0022984:88220-88239 None:intergenic 45.0%
CGATACTGCTCGCTTATGAA+AGG + tig0022984:88225-88244 None:intergenic 45.0%
TTTGATGCCATGTGGGACTT+GGG - tig0022984:88446-88465 Msa1403940:intron 45.0%
CATTGTGTTTCGACGTCACA+GGG + tig0022984:88637-88656 None:intergenic 45.0%
CTGTGACGTCGAAACACAAT+GGG - tig0022984:88636-88655 Msa1403940:intron 45.0%
TGTGACGTCGAAACACAATG+GGG - tig0022984:88637-88656 Msa1403940:intron 45.0%
! AAACACAATGGGGAGAGTGT+TGG - tig0022984:88647-88666 Msa1403940:intron 45.0%
!! GTCAAATATGCTCTGAGAGG+TGG - tig0022984:88688-88707 Msa1403940:intron 45.0%
TAGGAAGATAGGTTAGGGGA+AGG + tig0022984:88772-88791 None:intergenic 45.0%
AACGTTGCCTGATATTGCGA+TGG - tig0022984:88847-88866 Msa1403940:intron 45.0%
CAATTGGCCATCGCAATATC+AGG + tig0022984:88857-88876 None:intergenic 45.0%
TATTGCGATGGCCAATTGTG+AGG - tig0022984:88859-88878 Msa1403940:intron 45.0%
! CATGGTGCTCTGCATTTTTC+AGG + tig0022984:88897-88916 None:intergenic 45.0%
TTGGCCTGAATGGTCACTAT+TGG - tig0022984:88921-88940 Msa1403940:intron 45.0%
TGGCCTGAATGGTCACTATT+GGG - tig0022984:88922-88941 Msa1403940:intron 45.0%
! GTACGATGTCACCCCTTTTA+TGG - tig0022984:89040-89059 Msa1403940:intron 45.0%
GGGATGATCCTCCATAAAAG+GGG + tig0022984:89054-89073 None:intergenic 45.0%
CGGGATGATCCTCCATAAAA+GGG + tig0022984:89055-89074 None:intergenic 45.0%
! CCTTTTATGGAGGATCATCC+CGG - tig0022984:89053-89072 Msa1403940:intron 45.0%
!! GGTATGCTACTAAAGCACTG+AGG - tig0022984:89128-89147 Msa1403940:intron 45.0%
TTGTACTGAGATTGCTGAGG+TGG + tig0022984:89318-89337 None:intergenic 45.0%
GGATTGTACTGAGATTGCTG+AGG + tig0022984:89321-89340 None:intergenic 45.0%
GTACAATCCGGACAAGACTT+CGG - tig0022984:89332-89351 Msa1403940:intron 45.0%
CAAAGGCTAAGCCCAATATC+AGG + tig0022984:89395-89414 None:intergenic 45.0%
CATCATATTGCACCCTTGTG+AGG - tig0022984:89456-89475 Msa1403940:intron 45.0%
TCATATTGCACCCTTGTGAG+GGG - tig0022984:89458-89477 Msa1403940:intron 45.0%
!! GGTGTCTTGAGCATTGAAAC+TGG - tig0022984:89534-89553 Msa1403940:intron 45.0%
CACTTTGCATCCCCATAAAC+AGG + tig0022984:89753-89772 None:intergenic 45.0%
ACTCAGAATCTCCCAAGGAC+CGG - tig0022984:86982-87001 Msa1403940:three_prime_UTR 50.0%
GAATTACCACTTCCGGTCCT+TGG + tig0022984:86997-87016 None:intergenic 50.0%
GTTTGATGCCATGTGGGACT+TGG - tig0022984:88445-88464 Msa1403940:intron 50.0%
CCATTGTGTTTCGACGTCAC+AGG + tig0022984:88638-88657 None:intergenic 50.0%
CCTGTGACGTCGAAACACAA+TGG - tig0022984:88635-88654 Msa1403940:intron 50.0%
TGGCCCAATAGTGACCATTC+AGG + tig0022984:88928-88947 None:intergenic 50.0%
! CGATGTCACCCCTTTTATGG+AGG - tig0022984:89043-89062 Msa1403940:intron 50.0%
CCGGGATGATCCTCCATAAA+AGG + tig0022984:89056-89075 None:intergenic 50.0%
TTTATGGAGGATCATCCCGG+AGG - tig0022984:89056-89075 Msa1403940:intron 50.0%
AACAGAACCTCATCACCTCC+GGG + tig0022984:89074-89093 None:intergenic 50.0%
CAACAGAACCTCATCACCTC+CGG + tig0022984:89075-89094 None:intergenic 50.0%
GAGGTTCTGTTGTCTGCAAC+AGG - tig0022984:89083-89102 Msa1403940:intron 50.0%
TGGAACGTAGGTGCGCTTAA+GGG + tig0022984:89298-89317 None:intergenic 50.0%
AGATTGCTGAGGTGGAACGT+AGG + tig0022984:89310-89329 None:intergenic 50.0%
CTGGTGCCTCTCCTGATATT+GGG - tig0022984:89381-89400 Msa1403940:CDS 50.0%
GCTAAGCCCAATATCAGGAG+AGG + tig0022984:89390-89409 None:intergenic 50.0%
AGCTAACAGACCCCTCACAA+GGG + tig0022984:89471-89490 None:intergenic 50.0%
TAGCTAACAGACCCCTCACA+AGG + tig0022984:89472-89491 None:intergenic 50.0%
AATCTCCCAAGGACCGGAAG+TGG - tig0022984:86988-87007 Msa1403940:three_prime_UTR 55.0%
ATGCCATGTGGGACTTGGGA+AGG - tig0022984:88450-88469 Msa1403940:intron 55.0%
TGCCATGTGGGACTTGGGAA+GGG - tig0022984:88451-88470 Msa1403940:intron 55.0%
TTCCCTTCCCAAGTCCCACA+TGG + tig0022984:88456-88475 None:intergenic 55.0%
TCGACGTCACAGGGAACAGA+AGG + tig0022984:88628-88647 None:intergenic 55.0%
GCGCTTAAGGGAACAGTGGA+TGG + tig0022984:89286-89305 None:intergenic 55.0%
AGGTGCGCTTAAGGGAACAG+TGG + tig0022984:89290-89309 None:intergenic 55.0%
GTGGAACGTAGGTGCGCTTA+AGG + tig0022984:89299-89318 None:intergenic 55.0%
!! CCAATATCAGGAGAGGCACC+AGG + tig0022984:89383-89402 None:intergenic 55.0%
CCTGGTGCCTCTCCTGATAT+TGG - tig0022984:89380-89399 Msa1403940:CDS 55.0%
GGATCATCCCGGAGGTGATG+AGG - tig0022984:89064-89083 Msa1403940:intron 60.0%
Chromosome Type Strat End Strand Name
tig0022984 gene 86932 89802 86932 ID=Msa1403940;Name=Msa1403940
tig0022984 mRNA 86932 89802 86932 ID=Msa1403940-mRNA-1;Parent=Msa1403940;Name=Msa1403940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=91|1|1|1|0.66|0.5|4|439|107
tig0022984 exon 86932 87540 86932 ID=Msa1403940-mRNA-1:exon:19525;Parent=Msa1403940-mRNA-1
tig0022984 exon 87630 87696 87630 ID=Msa1403940-mRNA-1:exon:19524;Parent=Msa1403940-mRNA-1
tig0022984 exon 89374 89473 89374 ID=Msa1403940-mRNA-1:exon:19523;Parent=Msa1403940-mRNA-1
tig0022984 exon 89725 89802 89725 ID=Msa1403940-mRNA-1:exon:19522;Parent=Msa1403940-mRNA-1
tig0022984 five_prime_UTR 89725 89802 89725 ID=Msa1403940-mRNA-1:five_prime_utr;Parent=Msa1403940-mRNA-1
tig0022984 five_prime_UTR 89461 89473 89461 ID=Msa1403940-mRNA-1:five_prime_utr;Parent=Msa1403940-mRNA-1
tig0022984 CDS 89374 89460 89374 ID=Msa1403940-mRNA-1:cds;Parent=Msa1403940-mRNA-1
tig0022984 CDS 87630 87696 87630 ID=Msa1403940-mRNA-1:cds;Parent=Msa1403940-mRNA-1
tig0022984 CDS 87371 87540 87371 ID=Msa1403940-mRNA-1:cds;Parent=Msa1403940-mRNA-1
tig0022984 three_prime_UTR 86932 87370 86932 ID=Msa1403940-mRNA-1:three_prime_utr;Parent=Msa1403940-mRNA-1
Gene Sequence

>Msa1403940

ATGGCTTCAGATCCAAAGCTTCACACTTTCGATGATGTGTCAAAGCACAACAAGACCAAAGATTGCTGGCTTATTCTCTCTGGAAAGGTGTACGATGTCACCCCTTTTATGGAGGATCATCCCGGAGGTGATGAGGTTCTGTTGTCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTGGGACACAGTGATTCTGCTAGAGAAATGATGGACAAATACTACATTGGTGAGATTGATCCATCCACTGTTCCCTTAAGCGCACCTACGTTCCACCTCAGCAATCTCAGTACAATCCGGACAAGACTTCGGAATTTGTGA
Protein sequence

>Msa1403940

MASDPKLHTFDDVSKHNKTKDCWLILSGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLSAPTFHLSNLSTIRTRLRNL*