Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024290 | sp|P0DI40|CASP1_VIGUN | 75.000 | 168 | 20 | 2 | 1 | 148 | 1 | 166 | 8.14e-78 | 236 |
| Msa0024290 | sp|P0DI40|CASP1_VIGUN | 81.818 | 55 | 10 | 0 | 214 | 268 | 138 | 192 | 2.87e-16 | 78.2 |
| Msa0024290 | sp|P0DI40|CASP1_VIGUN | 77.273 | 44 | 7 | 1 | 170 | 213 | 15 | 55 | 6.26e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0024290 | 0.821925 | 3.115793e-53 | -8.615850e-47 |
| Msa0024280 | Msa0024290 | 0.830464 | 2.893411e-55 | -8.615850e-47 |
| Msa0024290 | Msa0048950 | 0.842469 | 2.537082e-58 | -8.615850e-47 |
| Msa0024290 | Msa0059880 | 0.834632 | 2.678469e-56 | -8.615850e-47 |
| Msa0024290 | Msa0069480 | 0.828539 | 8.497553e-55 | -8.615850e-47 |
| Msa0024290 | Msa0072030 | 0.911919 | 3.523569e-83 | -8.615850e-47 |
| Msa0024290 | Msa0102930 | 0.804019 | 2.641260e-49 | -8.615850e-47 |
| Msa0024290 | Msa0120050 | 0.802406 | 5.696542e-49 | -8.615850e-47 |
| Msa0024290 | Msa0120070 | 0.885432 | 8.173990e-72 | -8.615850e-47 |
| Msa0024290 | Msa0143710 | 0.802228 | 6.198128e-49 | -8.615850e-47 |
| Msa0024290 | Msa0147670 | 0.833552 | 4.994788e-56 | -8.615850e-47 |
| Msa0024290 | Msa0150910 | 0.814636 | 1.393129e-51 | -8.615850e-47 |
| Msa0024290 | Msa0163340 | 0.834080 | 3.684474e-56 | -8.615850e-47 |
| Msa0024290 | Msa0163370 | 0.903042 | 5.219431e-79 | -8.615850e-47 |
| Msa0024290 | Msa0177260 | 0.801743 | 7.796887e-49 | -8.615850e-47 |
| Msa0024290 | Msa0210790 | 0.815571 | 8.633549e-52 | -8.615850e-47 |
| Msa0024290 | Msa0210850 | 0.818994 | 1.465650e-52 | -8.615850e-47 |
| Msa0024290 | Msa0219210 | 0.808910 | 2.455797e-50 | -8.615850e-47 |
| Msa0024290 | Msa0223880 | 0.819620 | 1.055378e-52 | -8.615850e-47 |
| Msa0024290 | Msa0251120 | 0.809623 | 1.727054e-50 | -8.615850e-47 |
| Msa0024290 | Msa0265060 | 0.815795 | 7.696540e-52 | -8.615850e-47 |
| Msa0024290 | Msa0269720 | 0.811748 | 5.993515e-51 | -8.615850e-47 |
| Msa0024290 | Msa0298270 | 0.810167 | 1.318450e-50 | -8.615850e-47 |
| Msa0024290 | Msa0327890 | 0.811965 | 5.376341e-51 | -8.615850e-47 |
| Msa0024290 | Msa0336630 | 0.815881 | 7.365151e-52 | -8.615850e-47 |
| Msa0024290 | Msa0340650 | 0.816102 | 6.573888e-52 | -8.615850e-47 |
| Msa0024290 | Msa0425950 | 0.822466 | 2.333930e-53 | -8.615850e-47 |
| Msa0024290 | Msa0426030 | 0.818102 | 2.335876e-52 | -8.615850e-47 |
| Msa0024290 | Msa0426170 | 0.811603 | 6.444613e-51 | -8.615850e-47 |
| Msa0024290 | Msa0491770 | 0.807075 | 6.032928e-50 | -8.615850e-47 |
| Msa0024290 | Msa0515260 | 0.807366 | 5.235228e-50 | -8.615850e-47 |
| Msa0024290 | Msa0535570 | 0.809745 | 1.625554e-50 | -8.615850e-47 |
| Msa0024290 | Msa0537210 | 0.819058 | 1.417698e-52 | -8.615850e-47 |
| Msa0024290 | Msa0543740 | 0.804864 | 1.760465e-49 | -8.615850e-47 |
| Msa0024290 | Msa0548970 | 0.826849 | 2.164365e-54 | -8.615850e-47 |
| Msa0024290 | Msa0599600 | 0.825222 | 5.273806e-54 | -8.615850e-47 |
| Msa0024290 | Msa0603950 | 0.805453 | 1.325172e-49 | -8.615850e-47 |
| Msa0024290 | Msa0605470 | 0.844982 | 5.394013e-59 | -8.615850e-47 |
| Msa0024290 | Msa0609720 | 0.800008 | 1.763165e-48 | -8.615850e-47 |
| Msa0024290 | Msa0629030 | 0.802883 | 4.540526e-49 | -8.615850e-47 |
| Msa0024290 | Msa0640290 | 0.807267 | 5.494349e-50 | -8.615850e-47 |
| Msa0024290 | Msa0643840 | 0.803046 | 4.202384e-49 | -8.615850e-47 |
| Msa0024290 | Msa0650310 | 0.826001 | 3.447516e-54 | -8.615850e-47 |
| Msa0024290 | Msa0650440 | 0.828111 | 1.078098e-54 | -8.615850e-47 |
| Msa0024290 | Msa0655430 | 0.813568 | 2.396088e-51 | -8.615850e-47 |
| Msa0024290 | Msa0666580 | 0.809050 | 2.291159e-50 | -8.615850e-47 |
| Msa0024290 | Msa0672090 | 0.804924 | 1.710556e-49 | -8.615850e-47 |
| Msa0024290 | Msa0678620 | 0.833225 | 6.027868e-56 | -8.615850e-47 |
| Msa0024290 | Msa0684720 | 0.825843 | 3.758318e-54 | -8.615850e-47 |
| Msa0024290 | Msa0716700 | 0.804896 | 1.732976e-49 | -8.615850e-47 |
| Msa0024290 | Msa0727480 | 0.830031 | 3.691922e-55 | -8.615850e-47 |
| Msa0024290 | Msa0735280 | 0.810111 | 1.355993e-50 | -8.615850e-47 |
| Msa0024290 | Msa0768670 | 0.815985 | 6.982204e-52 | -8.615850e-47 |
| Msa0024290 | Msa0768720 | 0.835413 | 1.702246e-56 | -8.615850e-47 |
| Msa0024290 | Msa0772420 | 0.811649 | 6.300091e-51 | -8.615850e-47 |
| Msa0024290 | Msa0777250 | 0.841953 | 3.474855e-58 | -8.615850e-47 |
| Msa0024290 | Msa0814230 | 0.825372 | 4.859766e-54 | -8.615850e-47 |
| Msa0024290 | Msa0883640 | 0.845393 | 4.176684e-59 | -8.615850e-47 |
| Msa0024290 | Msa0893840 | 0.809941 | 1.474977e-50 | -8.615850e-47 |
| Msa0024290 | Msa0896920 | 0.810244 | 1.269495e-50 | -8.615850e-47 |
| Msa0024290 | Msa0902340 | 0.801019 | 1.096684e-48 | -8.615850e-47 |
| Msa0024290 | Msa0910830 | 0.851582 | 8.080776e-61 | -8.615850e-47 |
| Msa0024290 | Msa0913550 | 0.817028 | 4.078203e-52 | -8.615850e-47 |
| Msa0024290 | Msa0960090 | 0.845948 | 2.952724e-59 | -8.615850e-47 |
| Msa0024290 | Msa0985700 | 0.845131 | 4.918169e-59 | -8.615850e-47 |
| Msa0024290 | Msa0987640 | 0.819192 | 1.321147e-52 | -8.615850e-47 |
| Msa0024290 | Msa1021620 | 0.825772 | 3.905831e-54 | -8.615850e-47 |
| Msa0024290 | Msa1024350 | 0.812315 | 4.509551e-51 | -8.615850e-47 |
| Msa0024290 | Msa1026050 | 0.811975 | 5.348576e-51 | -8.615850e-47 |
| Msa0024290 | Msa1037350 | 0.811342 | 7.343535e-51 | -8.615850e-47 |
| Msa0024290 | Msa1061670 | 0.834166 | 3.507311e-56 | -8.615850e-47 |
| Msa0024290 | Msa1076830 | 0.825898 | 3.646257e-54 | -8.615850e-47 |
| Msa0024290 | Msa1104960 | 0.815863 | 7.434529e-52 | -8.615850e-47 |
| Msa0024290 | Msa1106680 | 0.805258 | 1.456142e-49 | -8.615850e-47 |
| Msa0024290 | Msa1106960 | 0.826561 | 2.536250e-54 | -8.615850e-47 |
| Msa0024290 | Msa1109890 | 0.830505 | 2.827591e-55 | -8.615850e-47 |
| Msa0024290 | Msa1123010 | 0.807255 | 5.528173e-50 | -8.615850e-47 |
| Msa0024290 | Msa1149020 | 0.807350 | 5.276807e-50 | -8.615850e-47 |
| Msa0024290 | Msa1164240 | 0.805336 | 1.402040e-49 | -8.615850e-47 |
| Msa0024290 | Msa1166530 | 0.800152 | 1.647842e-48 | -8.615850e-47 |
| Msa0024290 | Msa1214960 | 0.810053 | 1.395796e-50 | -8.615850e-47 |
| Msa0024290 | Msa1269050 | 0.822687 | 2.073063e-53 | -8.615850e-47 |
| Msa0024290 | Msa1300610 | 0.808060 | 3.727912e-50 | -8.615850e-47 |
| Msa0024290 | Msa1323030 | 0.832272 | 1.039094e-55 | -8.615850e-47 |
| Msa0024290 | Msa1323120 | 0.813569 | 2.395433e-51 | -8.615850e-47 |
| Msa0024290 | Msa1329740 | 0.803396 | 3.556937e-49 | -8.615850e-47 |
| Msa0024290 | Msa1357860 | 0.809349 | 1.976875e-50 | -8.615850e-47 |
| Msa0024290 | Msa1376070 | 0.827574 | 1.451303e-54 | -8.615850e-47 |
| Msa0024290 | Msa1377520 | 0.810574 | 1.077120e-50 | -8.615850e-47 |
| Msa0024290 | Msa1407670 | 0.831552 | 1.564787e-55 | -8.615850e-47 |
| Msa0024290 | Msa1420020 | 0.819191 | 1.321750e-52 | -8.615850e-47 |
| Msa0024290 | Msa1445900 | 0.834210 | 3.420162e-56 | -8.615850e-47 |
| Msa0024290 | Msa1449770 | 0.828303 | 9.687956e-55 | -8.615850e-47 |
| Msa0024290 | Msa1459610 | 0.829279 | 5.625627e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024290 | MtrunA17_Chr1g0178191 | 86.631 | 187 | 5 | 1 | 1 | 167 | 1 | 187 | 2.58e-109 | 313 |
| Msa0024290 | MtrunA17_Chr1g0178191 | 98.182 | 55 | 1 | 0 | 214 | 268 | 140 | 194 | 2.10e-25 | 99.4 |
| Msa0024290 | MtrunA17_Chr1g0178191 | 86.364 | 44 | 5 | 1 | 170 | 213 | 15 | 57 | 4.91e-11 | 60.5 |
| Msa0024290 | MtrunA17_Chr1g0178161 | 68.539 | 178 | 34 | 2 | 1 | 156 | 1 | 178 | 7.20e-76 | 229 |
| Msa0024290 | MtrunA17_Chr1g0178161 | 89.091 | 55 | 6 | 0 | 214 | 268 | 142 | 196 | 3.47e-22 | 90.9 |
| Msa0024290 | MtrunA17_Chr1g0178161 | 78.571 | 42 | 9 | 0 | 172 | 213 | 18 | 59 | 3.40e-15 | 72.0 |
| Msa0024290 | MtrunA17_Chr1g0178181 | 76.271 | 177 | 21 | 2 | 1 | 156 | 1 | 177 | 1.35e-73 | 223 |
| Msa0024290 | MtrunA17_Chr1g0178181 | 94.545 | 55 | 3 | 0 | 214 | 268 | 141 | 195 | 6.14e-25 | 98.2 |
| Msa0024290 | MtrunA17_Chr1g0178181 | 100.000 | 47 | 0 | 0 | 167 | 213 | 12 | 58 | 9.41e-18 | 79.3 |
| Msa0024290 | MtrunA17_Chr7g0217691 | 41.714 | 175 | 78 | 2 | 12 | 166 | 8 | 178 | 1.00e-42 | 144 |
| Msa0024290 | MtrunA17_Chr7g0217691 | 41.026 | 78 | 43 | 2 | 191 | 268 | 112 | 186 | 2.60e-15 | 72.4 |
| Msa0024290 | MtrunA17_Chr2g0321671 | 51.829 | 164 | 59 | 1 | 23 | 166 | 49 | 212 | 3.87e-40 | 138 |
| Msa0024290 | MtrunA17_Chr2g0321671 | 60.377 | 53 | 21 | 0 | 215 | 267 | 167 | 219 | 1.07e-13 | 68.6 |
| Msa0024290 | MtrunA17_Chr4g0042551 | 41.573 | 178 | 79 | 4 | 9 | 166 | 37 | 209 | 7.59e-37 | 130 |
| Msa0024290 | MtrunA17_Chr5g0417761 | 39.506 | 162 | 78 | 1 | 28 | 169 | 20 | 181 | 4.13e-32 | 116 |
| Msa0024290 | MtrunA17_Chr4g0021111 | 35.811 | 148 | 80 | 3 | 31 | 165 | 3 | 148 | 4.73e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024290 | AT2G36100.1 | 54.645 | 183 | 54 | 2 | 2 | 155 | 5 | 187 | 4.82e-53 | 171 |
| Msa0024290 | AT2G36100.1 | 59.259 | 54 | 22 | 0 | 215 | 268 | 153 | 206 | 1.17e-13 | 68.6 |
| Msa0024290 | AT5G06200.1 | 56.842 | 190 | 57 | 3 | 2 | 166 | 5 | 194 | 4.52e-52 | 169 |
| Msa0024290 | AT5G06200.1 | 59.259 | 54 | 22 | 0 | 214 | 267 | 148 | 201 | 4.36e-17 | 77.8 |
| Msa0024290 | AT3G11550.1 | 56.771 | 192 | 56 | 3 | 2 | 166 | 5 | 196 | 1.52e-46 | 155 |
| Msa0024290 | AT3G11550.1 | 61.111 | 54 | 21 | 0 | 215 | 268 | 151 | 204 | 2.00e-13 | 67.8 |
| Msa0024290 | AT2G27370.1 | 52.795 | 161 | 56 | 2 | 26 | 166 | 52 | 212 | 2.94e-44 | 149 |
| Msa0024290 | AT2G27370.1 | 58.730 | 63 | 26 | 0 | 205 | 267 | 157 | 219 | 9.78e-20 | 85.5 |
| Msa0024290 | AT5G15290.1 | 43.333 | 150 | 65 | 1 | 25 | 154 | 17 | 166 | 3.19e-36 | 127 |
| Msa0024290 | AT5G15290.1 | 49.020 | 51 | 24 | 1 | 198 | 248 | 118 | 166 | 4.10e-11 | 61.2 |
| Msa0024290 | AT1G14160.1 | 37.179 | 156 | 78 | 1 | 30 | 165 | 45 | 200 | 2.21e-29 | 110 |
| Msa0024290 | AT1G14160.1 | 45.161 | 62 | 34 | 0 | 207 | 268 | 148 | 209 | 1.77e-14 | 70.9 |
| Msa0024290 | AT1G03700.1 | 35.714 | 140 | 75 | 4 | 39 | 165 | 12 | 149 | 1.30e-15 | 72.8 |
| Msa0024290 | AT4G03540.1 | 35.088 | 114 | 59 | 3 | 55 | 155 | 28 | 139 | 1.97e-12 | 64.3 |
Find 59 sgRNAs with CRISPR-Local
Find 423 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTAATGTTGCTTGATTC+TGG | 0.072454 | 1_1:+46732083 | None:intergenic |
| TTCCATCCTCCTGGCCTTGC+AGG | 0.176057 | 1_1:+46726353 | None:intergenic |
| CTTGCCATTTGCAACCAATT+TGG | 0.187527 | 1_1:-46725300 | Msa0024290:CDS |
| CTTGCCATTTGCAACCAATT+TGG | 0.187527 | 1_1:-46731392 | Msa0024290:CDS |
| GTGATGTCTGCCTTGGCTAT+TGG | 0.255520 | 1_1:-46725204 | Msa0024290:CDS |
| TGATGTCTGCCTTGGCTATT+GGG | 0.286725 | 1_1:-46725203 | Msa0024290:CDS |
| CCTTAAAATGAAATCCATTA+TGG | 0.301071 | 1_1:+46726319 | None:intergenic |
| AAGGCCTGGAGGATGGAAAA+AGG | 0.302153 | 1_1:-46732033 | Msa0024290:CDS |
| CCTTAGAATGAAATCCATTA+TGG | 0.309686 | 1_1:+46732004 | None:intergenic |
| CCATAATGGATTTCATTCTA+AGG | 0.312115 | 1_1:-46732004 | Msa0024290:CDS |
| TACCAAAGGAAAAGCTGTTT+TGG | 0.315492 | 1_1:-46726384 | Msa0024290:CDS |
| TTCCATCCTCCAGGCCTTGT+AGG | 0.319831 | 1_1:+46732038 | None:intergenic |
| AAGGCCAGGAGGATGGAAAA+AGG | 0.353235 | 1_1:-46726348 | Msa0024290:CDS |
| TATTGCCGCTGCCGCCTCAA+TGG | 0.357738 | 1_1:-46731961 | Msa0024290:CDS |
| ATTGCCGCTGCCGCCTCAAT+GGG | 0.364904 | 1_1:-46731960 | Msa0024290:CDS |
| TGTTAATGTTGCTTGATTCT+GGG | 0.378773 | 1_1:+46732084 | None:intergenic |
| ATGGATTTCATTCTAAGGTT+AGG | 0.379588 | 1_1:-46731999 | Msa0024290:CDS |
| TCTTGCCGCTGCCGCCTCGA+TGG | 0.384071 | 1_1:-46726276 | Msa0024290:CDS |
| AGCTGCTTCCATAGTTTACT+TGG | 0.385601 | 1_1:-46725352 | Msa0024290:intron |
| AGCTGCTTCCATAGTTTACT+TGG | 0.387801 | 1_1:-46731444 | Msa0024290:CDS |
| CTTGCCGCTGCCGCCTCGAT+GGG | 0.402133 | 1_1:-46726275 | Msa0024290:CDS |
| GTGCACAGAAATCTCCAAAT+TGG | 0.409853 | 1_1:+46731378 | None:intergenic |
| AGCTGCAGCAGCACTTGAAG+TGG | 0.421850 | 1_1:+46731463 | None:intergenic |
| ATGGAAATCAAGACACAAAC+TGG | 0.422312 | 1_1:-46725323 | Msa0024290:CDS |
| ATGGAAATCAAGACACAAAC+TGG | 0.422312 | 1_1:-46731415 | Msa0024290:CDS |
| AGCGGCAAGAGCTGCTGCTA+TGG | 0.432197 | 1_1:+46726289 | None:intergenic |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.439108 | 1_1:+46725296 | None:intergenic |
| AGCGGCAATAGCCGCTGCTA+TGG | 0.444367 | 1_1:+46731974 | None:intergenic |
| GTTGGTTGTGATGTCTGCCT+TGG | 0.449789 | 1_1:-46725211 | Msa0024290:CDS |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.456502 | 1_1:+46731388 | None:intergenic |
| GTTGCAGCACCTGCAAGGCC+AGG | 0.457764 | 1_1:-46726362 | Msa0024290:CDS |
| TGGTAGGGATAGAACTAAGT+AGG | 0.473587 | 1_1:+46731746 | None:intergenic |
| CACCTGCAAGGCCAGGAGGA+TGG | 0.475215 | 1_1:-46726355 | Msa0024290:CDS |
| TGTTCCCATTGAGGCGGCAG+CGG | 0.482406 | 1_1:+46731956 | None:intergenic |
| CTAGTTGCACCTACAAGGCC+TGG | 0.489392 | 1_1:-46732047 | Msa0024290:CDS |
| ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1_1:+46731436 | None:intergenic |
| GCTTGATTCTGGGACATCAA+TGG | 0.503870 | 1_1:+46732094 | None:intergenic |
| TGGCTACGACAGAGAATGGT+AGG | 0.504458 | 1_1:+46731730 | None:intergenic |
| CAATTCTAGTTGCACCTACA+AGG | 0.507515 | 1_1:-46732052 | Msa0024290:CDS |
| CACCTACAAGGCCTGGAGGA+TGG | 0.513895 | 1_1:-46732040 | Msa0024290:CDS |
| TGTTCCCATCGAGGCGGCAG+CGG | 0.517932 | 1_1:+46726271 | None:intergenic |
| ATGATGGCTACGACAGAGAA+TGG | 0.518145 | 1_1:+46731726 | None:intergenic |
| CTGATCACTTGTTCCCATTG+AGG | 0.525536 | 1_1:+46731947 | None:intergenic |
| ACAGACAAGTGGAGCAGTTG+TGG | 0.555649 | 1_1:-46725265 | Msa0024290:CDS |
| ATCACTTGTTCCCATTGAGG+CGG | 0.575884 | 1_1:+46731950 | None:intergenic |
| AGTTGCATCATTTATTACTG+TGG | 0.594258 | 1_1:-46731339 | Msa0024290:CDS |
| GATTTCTGTGCACAGACAAG+TGG | 0.595748 | 1_1:-46731368 | Msa0024290:CDS |
| TGTGGCATCATTTATTACTG+TGG | 0.599611 | 1_1:-46725247 | Msa0024290:CDS |
| TCAATGCTTCCCAATAGCCA+AGG | 0.611842 | 1_1:+46725194 | None:intergenic |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1_1:-46725342 | Msa0024290:intron |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1_1:-46731434 | Msa0024290:CDS |
| GCAGCACCTGCAAGGCCAGG+AGG | 0.636977 | 1_1:-46726359 | Msa0024290:CDS |
| AGAATCAAGCAACATTAACA+AGG | 0.641758 | 1_1:-46732081 | Msa0024290:CDS |
| GAATCAAGCAAAGATACCAA+AGG | 0.648211 | 1_1:-46726398 | Msa0024290:intron |
| ATCACTTGTTCCCATCGAGG+CGG | 0.653937 | 1_1:+46726265 | None:intergenic |
| AAGGTTAGGTGCCATAGCAG+CGG | 0.656083 | 1_1:-46731985 | Msa0024290:CDS |
| TTGATCACTTGTTCCCATCG+AGG | 0.661241 | 1_1:+46726262 | None:intergenic |
| GGCTACGACAGAGAATGGTA+GGG | 0.661247 | 1_1:+46731731 | None:intergenic |
| GTTGCACCTACAAGGCCTGG+AGG | 0.707990 | 1_1:-46732044 | Msa0024290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTAATAAAAATATGATA+AGG | - | chr1_1:46725694-46725713 | Msa0024290:intron | 10.0% |
| !! | TGTTAATAAAAATATGATAA+GGG | - | chr1_1:46725695-46725714 | Msa0024290:intron | 10.0% |
| !! | GAATTTATCATTAAAAAATA+AGG | + | chr1_1:46726748-46726767 | None:intergenic | 10.0% |
| !! | TAACTTCTTAAAAAAAAATT+AGG | - | chr1_1:46731820-46731839 | Msa0024290:intron | 10.0% |
| !!! | GTATTAGCTTATTATAATTA+TGG | + | chr1_1:46725486-46725505 | None:intergenic | 15.0% |
| !! | GTTAATAAAAATATGATAAG+GGG | - | chr1_1:46725696-46725715 | Msa0024290:intron | 15.0% |
| !! | ATTAAATTGTATACATCAAT+CGG | + | chr1_1:46725734-46725753 | None:intergenic | 15.0% |
| !!! | TGATTAATGTTTTTGATATT+TGG | - | chr1_1:46726171-46726190 | Msa0024290:intron | 15.0% |
| !!! | TTTCTTTTTTGTTTCTTTAA+CGG | - | chr1_1:46726693-46726712 | Msa0024290:intron | 15.0% |
| !!! | TTTTTAATGATAAATTCTTC+CGG | - | chr1_1:46726751-46726770 | Msa0024290:intron | 15.0% |
| !! | AAGAATTTCAATAAGTAAAA+AGG | - | chr1_1:46726824-46726843 | Msa0024290:intron | 15.0% |
| !! | TTCATTAAATAATTAGATGA+TGG | - | chr1_1:46726977-46726996 | Msa0024290:intron | 15.0% |
| !!! | TGAAACTATAGATATTTTTA+AGG | + | chr1_1:46727050-46727069 | None:intergenic | 15.0% |
| !!! | AAAAGCTAATATTTTTCAAA+TGG | - | chr1_1:46727140-46727159 | Msa0024290:intron | 15.0% |
| !!! | TTTTTATTTTTCATTCCTTT+TGG | + | chr1_1:46727401-46727420 | None:intergenic | 15.0% |
| !! | AGTTGTGATAAAATTAAATA+CGG | - | chr1_1:46727961-46727980 | Msa0024290:intron | 15.0% |
| !! | GGATAAAATATTAATATTTG+AGG | - | chr1_1:46727982-46728001 | Msa0024290:intron | 15.0% |
| !! | GTGATATTAAAATAAGATTT+AGG | - | chr1_1:46728939-46728958 | Msa0024290:intron | 15.0% |
| !!! | TTGAAAAATGATTTTCTTAA+AGG | + | chr1_1:46729053-46729072 | None:intergenic | 15.0% |
| !!! | ATTTTAAAACCTTCAAAATT+TGG | + | chr1_1:46729731-46729750 | None:intergenic | 15.0% |
| !! | TATATGTATATTTGATTCTA+AGG | - | chr1_1:46729945-46729964 | Msa0024290:intron | 15.0% |
| !! | ATATGTATATTTGATTCTAA+GGG | - | chr1_1:46729946-46729965 | Msa0024290:intron | 15.0% |
| !! | TTAGATAGAAATAGAATATA+AGG | - | chr1_1:46730084-46730103 | Msa0024290:intron | 15.0% |
| !! | TAGATAGAAATAGAATATAA+GGG | - | chr1_1:46730085-46730104 | Msa0024290:intron | 15.0% |
| !!! | AGTTGATTTTATTTTTCTTA+AGG | + | chr1_1:46730256-46730275 | None:intergenic | 15.0% |
| !! | TTCTTAAAAAAAAATTAGGT+GGG | - | chr1_1:46731824-46731843 | Msa0024290:intron | 15.0% |
| !!! | TTACGATATCTAAGATAATA+AGG | + | chr1_1:46725628-46725647 | None:intergenic | 20.0% |
| !!! | AACTGTGTTTATGAAATTTT+AGG | - | chr1_1:46725797-46725816 | Msa0024290:intron | 20.0% |
| !! | AACAATTAAATAGGTAACTT+AGG | + | chr1_1:46726066-46726085 | None:intergenic | 20.0% |
| !!! | TTGATTTCTTGAATTGATTT+TGG | - | chr1_1:46726121-46726140 | Msa0024290:intron | 20.0% |
| !!! | TGATTTCTTGAATTGATTTT+GGG | - | chr1_1:46726122-46726141 | Msa0024290:intron | 20.0% |
| !! | TGAAAATTAAAACTAGAGAA+TGG | + | chr1_1:46726232-46726251 | None:intergenic | 20.0% |
| !! | TATTGATACTATACATTCTT+AGG | + | chr1_1:46726377-46726396 | None:intergenic | 20.0% |
| !! | ATTTCAATAAGTAAAAAGGT+AGG | - | chr1_1:46726828-46726847 | Msa0024290:intron | 20.0% |
| !! | AATTCTTATGTACTGAAATT+TGG | - | chr1_1:46726875-46726894 | Msa0024290:intron | 20.0% |
| !! | CTTTCAAAACAAAAACAAAA+TGG | + | chr1_1:46727556-46727575 | None:intergenic | 20.0% |
| !!! | ACATTTCTAAATTTTAGAAC+AGG | - | chr1_1:46727760-46727779 | Msa0024290:intron | 20.0% |
| !!! | ACTTTAAAAGAACTCATATT+AGG | + | chr1_1:46728021-46728040 | None:intergenic | 20.0% |
| !! | TATAAGAATGTCAAAATACA+GGG | - | chr1_1:46728179-46728198 | Msa0024290:intron | 20.0% |
| !!! | GATTTTCTTAAAGGTTAAAA+TGG | + | chr1_1:46729044-46729063 | None:intergenic | 20.0% |
| !!! | TAAAACTTTTCATGTCATTT+AGG | - | chr1_1:46729081-46729100 | Msa0024290:intron | 20.0% |
| !!! | ATTCAGTTAAAATTGATTCA+TGG | - | chr1_1:46729226-46729245 | Msa0024290:intron | 20.0% |
| !! | TGAGTAAATGAGATTTATAT+AGG | + | chr1_1:46729360-46729379 | None:intergenic | 20.0% |
| !!! | CAAAGGATAAAAAAAGTTTT+CGG | + | chr1_1:46729439-46729458 | None:intergenic | 20.0% |
| !!! | TTTGAAGGTTTTAAAATTTG+TGG | - | chr1_1:46729734-46729753 | Msa0024290:intron | 20.0% |
| !! | AATCTGTAACAAAACAAATT+TGG | + | chr1_1:46729914-46729933 | None:intergenic | 20.0% |
| !! | TATGTATATTTGATTCTAAG+GGG | - | chr1_1:46729947-46729966 | Msa0024290:intron | 20.0% |
| !!! | TTTTCAAGATAGTTAAAGTA+AGG | + | chr1_1:46730318-46730337 | None:intergenic | 20.0% |
| !!! | TACTTGTCATTTCTAAAAAA+TGG | - | chr1_1:46730500-46730519 | Msa0024290:intron | 20.0% |
| !! | TAATAATAAGTGAAGTTGTT+TGG | + | chr1_1:46730714-46730733 | None:intergenic | 20.0% |
| !!! | TCAATTTTAGTTGACATTTT+TGG | + | chr1_1:46730873-46730892 | None:intergenic | 20.0% |
| !! | CTCAAATATAAGTAAAAGTT+AGG | - | chr1_1:46731472-46731491 | Msa0024290:CDS | 20.0% |
| !!! | GATGTATTTAATTCAACTTT+TGG | + | chr1_1:46731522-46731541 | None:intergenic | 20.0% |
| !!! | TTAGTTATGATTTTTCTTTG+TGG | - | chr1_1:46731776-46731795 | Msa0024290:CDS | 20.0% |
| !! | CTTCTTAAAAAAAAATTAGG+TGG | - | chr1_1:46731823-46731842 | Msa0024290:intron | 20.0% |
| !!! | TTAGTTATGATTTTTCTTTG+TGG | - | chr1_1:46731776-46731795 | Msa0024290:CDS | 20.0% |
| !!! | CAGGTTTTTTGTTATTTCAA+TGG | - | chr1_1:46725517-46725536 | Msa0024290:intron | 25.0% |
| !!! | GAAGCATTGAAAATTAAGAT+TGG | - | chr1_1:46726025-46726044 | Msa0024290:intron | 25.0% |
| ! | TTACCTATTTAATTGTTGTC+AGG | - | chr1_1:46726069-46726088 | Msa0024290:intron | 25.0% |
| ! | AAACCTGACAACAATTAAAT+AGG | + | chr1_1:46726075-46726094 | None:intergenic | 25.0% |
| !!! | ATTTTGGGAAATTGTTGTTA+TGG | - | chr1_1:46726137-46726156 | Msa0024290:intron | 25.0% |
| ! | GGACAAAGTTATATTCATAT+TGG | + | chr1_1:46726211-46726230 | None:intergenic | 25.0% |
| ! | AAATTTCCCTCATGTTATTA+AGG | - | chr1_1:46726251-46726270 | Msa0024290:intron | 25.0% |
| ! | AATTTCCCTCATGTTATTAA+GGG | - | chr1_1:46726252-46726271 | Msa0024290:intron | 25.0% |
| !! | TTCTTAGGAGATATGAATTT+TGG | + | chr1_1:46726362-46726381 | None:intergenic | 25.0% |
| !! | ACACTTTATCTTCTTTCTTT+TGG | - | chr1_1:46726512-46726531 | Msa0024290:intron | 25.0% |
| ! | TTATGTACTGAAATTTGGTT+GGG | - | chr1_1:46726880-46726899 | Msa0024290:intron | 25.0% |
| !!! | TATTTTTAAGGTAAACACAC+CGG | + | chr1_1:46727038-46727057 | None:intergenic | 25.0% |
| ! | ATTCGTCTAAATTTCATATG+TGG | + | chr1_1:46727354-46727373 | None:intergenic | 25.0% |
| !!! | TTATTTTTCATTCCTTTTGG+TGG | + | chr1_1:46727398-46727417 | None:intergenic | 25.0% |
| ! | TTTAGCGACATTACAAAAAT+CGG | - | chr1_1:46727487-46727506 | Msa0024290:intron | 25.0% |
| !!! | GGGTTATTTTGCAATAATTT+TGG | - | chr1_1:46727651-46727670 | Msa0024290:intron | 25.0% |
| !! | TAATATTTGAGGTAAAAGTG+TGG | - | chr1_1:46727993-46728012 | Msa0024290:intron | 25.0% |
| !! | AATATTTGAGGTAAAAGTGT+GGG | - | chr1_1:46727994-46728013 | Msa0024290:intron | 25.0% |
| !! | TCTCTCAATTGATATTTTGT+GGG | + | chr1_1:46728100-46728119 | None:intergenic | 25.0% |
| !! | TATAGCATATCTTGTGTTTT+GGG | + | chr1_1:46728163-46728182 | None:intergenic | 25.0% |
| !! | TTATAGCATATCTTGTGTTT+TGG | + | chr1_1:46728164-46728183 | None:intergenic | 25.0% |
| ! | CTATAAGAATGTCAAAATAC+AGG | - | chr1_1:46728178-46728197 | Msa0024290:intron | 25.0% |
| ! | TTGAGTTTATTTATCCGTTT+CGG | + | chr1_1:46728274-46728293 | None:intergenic | 25.0% |
| !! | TTTTTGTCTTGATTTTGTCT+AGG | + | chr1_1:46728322-46728341 | None:intergenic | 25.0% |
| !!! | GCTTTTTTACTATTTCACTT+TGG | + | chr1_1:46728369-46728388 | None:intergenic | 25.0% |
| ! | TTGATTCTTCTATACATGAA+AGG | - | chr1_1:46728614-46728633 | Msa0024290:intron | 25.0% |
| !! | ATAAATGGATTTCTTTGTCA+GGG | + | chr1_1:46728750-46728769 | None:intergenic | 25.0% |
| !! | AATAAATGGATTTCTTTGTC+AGG | + | chr1_1:46728751-46728770 | None:intergenic | 25.0% |
| ! | ACCATGCTTAAAAAAAATGT+CGG | - | chr1_1:46728809-46728828 | Msa0024290:intron | 25.0% |
| !!! | GTGATTTTAGTTATGTTGAA+GGG | - | chr1_1:46729109-46729128 | Msa0024290:intron | 25.0% |
| ! | TGATTTGAATCATATGTTGA+AGG | - | chr1_1:46729152-46729171 | Msa0024290:intron | 25.0% |
| ! | GATTTGAATCATATGTTGAA+GGG | - | chr1_1:46729153-46729172 | Msa0024290:intron | 25.0% |
| !!! | ACTTTTTTTATCCTTTGATG+TGG | - | chr1_1:46729442-46729461 | Msa0024290:intron | 25.0% |
| !!! | CTTTTTTTATCCTTTGATGT+GGG | - | chr1_1:46729443-46729462 | Msa0024290:intron | 25.0% |
| ! | TCTAGATTTGATTAGATTGA+AGG | - | chr1_1:46729516-46729535 | Msa0024290:intron | 25.0% |
| !! | TTCAATTGTATATAGGTTGA+AGG | - | chr1_1:46729541-46729560 | Msa0024290:intron | 25.0% |
| !! | AATCAATTTCTTTTCACCTT+AGG | - | chr1_1:46729569-46729588 | Msa0024290:intron | 25.0% |
| !!! | TGTGAATTTTTAGGGTTTTT+AGG | - | chr1_1:46729593-46729612 | Msa0024290:intron | 25.0% |
| !! | ATAACAAGACCAAATTTTGA+AGG | - | chr1_1:46729719-46729738 | Msa0024290:intron | 25.0% |
| !! | ATGTATATTTGATTCTAAGG+GGG | - | chr1_1:46729948-46729967 | Msa0024290:intron | 25.0% |
| ! | AGTTTAACCCAAAAGTTATA+GGG | + | chr1_1:46729988-46730007 | None:intergenic | 25.0% |
| !!! | TATAACTTTTGGGTTAAACT+CGG | - | chr1_1:46729988-46730007 | Msa0024290:intron | 25.0% |
| ! | ACTAAGAAGAAAAAGTAAAC+CGG | - | chr1_1:46730281-46730300 | Msa0024290:intron | 25.0% |
| !! | TTTGTGACATTTTATGTTGT+AGG | + | chr1_1:46730389-46730408 | None:intergenic | 25.0% |
| !! | ATGACAAGTATTGTTGATAT+TGG | + | chr1_1:46730490-46730509 | None:intergenic | 25.0% |
| ! | AGCTTATATATAGAGATTAG+AGG | + | chr1_1:46730759-46730778 | None:intergenic | 25.0% |
| ! | CATTAATACATTTGCATCAT+TGG | - | chr1_1:46730784-46730803 | Msa0024290:intron | 25.0% |
| ! | CCTTAAAATGAAATCCATTA+TGG | + | chr1_1:46730982-46731001 | None:intergenic | 25.0% |
| !!! | CCATAATGGATTTCATTTTA+AGG | - | chr1_1:46730979-46730998 | Msa0024290:intron | 25.0% |
| !!! | ATGGATTTCATTTTAAGGTT+AGG | - | chr1_1:46730984-46731003 | Msa0024290:intron | 25.0% |
| ! | TTCTAAGTCACATATAAGAT+CGG | - | chr1_1:46731158-46731177 | Msa0024290:intron | 25.0% |
| !! | TTACTTATATTTGAGACTGT+AGG | + | chr1_1:46731467-46731486 | None:intergenic | 25.0% |
| !!! | TTATGATTTTTCAATCCACT+TGG | - | chr1_1:46731639-46731658 | Msa0024290:intron | 25.0% |
| ! | TGTTAATGTTGCTTGATTCT+GGG | + | chr1_1:46725217-46725236 | None:intergenic | 30.0% |
| ! | TTGTTAATGTTGCTTGATTC+TGG | + | chr1_1:46725218-46725237 | None:intergenic | 30.0% |
| AGAATCAAGCAACATTAACA+AGG | - | chr1_1:46725217-46725236 | Msa0024290:CDS | 30.0% | |
| CCTTAGAATGAAATCCATTA+TGG | + | chr1_1:46725297-46725316 | None:intergenic | 30.0% | |
| !! | CCATAATGGATTTCATTCTA+AGG | - | chr1_1:46725294-46725313 | Msa0024290:CDS | 30.0% |
| !! | ATGGATTTCATTCTAAGGTT+AGG | - | chr1_1:46725299-46725318 | Msa0024290:CDS | 30.0% |
| GAAAGAACTGAGTGAAAAAA+GGG | + | chr1_1:46725382-46725401 | None:intergenic | 30.0% | |
| TGAAAGAACTGAGTGAAAAA+AGG | + | chr1_1:46725383-46725402 | None:intergenic | 30.0% | |
| !!! | AAGTTTTGAGTGTTACATAC+TGG | + | chr1_1:46725439-46725458 | None:intergenic | 30.0% |
| AAGATAATAAGGAAAAGCCT+TGG | + | chr1_1:46725617-46725636 | None:intergenic | 30.0% | |
| TAAAAATATGATAAGGGGTG+CGG | - | chr1_1:46725701-46725720 | Msa0024290:intron | 30.0% | |
| !! | ATTTTAGGTGTTTCTTACTC+TGG | - | chr1_1:46725812-46725831 | Msa0024290:intron | 30.0% |
| AGTTGCATCATTTATTACTG+TGG | - | chr1_1:46725959-46725978 | Msa0024290:intron | 30.0% | |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1_1:46725977-46725996 | Msa0024290:intron | 30.0% |
| ACATGACAACTTTACATGAA+AGG | - | chr1_1:46726416-46726435 | Msa0024290:intron | 30.0% | |
| GTAGAATGAAGAAGAAATGA+TGG | + | chr1_1:46726494-46726513 | None:intergenic | 30.0% | |
| ! | TCTTTCTTTTGGTAGAAGTT+TGG | - | chr1_1:46726523-46726542 | Msa0024290:intron | 30.0% |
| ! | AAGTTTGGAGTTAGTATTAG+TGG | - | chr1_1:46726538-46726557 | Msa0024290:intron | 30.0% |
| TTAATGATAAATTCTTCCGG+TGG | - | chr1_1:46726754-46726773 | Msa0024290:intron | 30.0% | |
| TAATGATAAATTCTTCCGGT+GGG | - | chr1_1:46726755-46726774 | Msa0024290:intron | 30.0% | |
| CTTATGTACTGAAATTTGGT+TGG | - | chr1_1:46726879-46726898 | Msa0024290:intron | 30.0% | |
| AGTTTCAATTTAGCTATGCT+TGG | - | chr1_1:46727063-46727082 | Msa0024290:intron | 30.0% | |
| ATATATCTCACAAATTCCGA+CGG | - | chr1_1:46727104-46727123 | Msa0024290:intron | 30.0% | |
| ! | TTTTCAAATGGCGATTTTGT+TGG | - | chr1_1:46727152-46727171 | Msa0024290:intron | 30.0% |
| ! | GCTATGTTTGAAGTAGTATA+TGG | - | chr1_1:46727202-46727221 | Msa0024290:intron | 30.0% |
| AAGTAGTATATGGTCTACAT+AGG | - | chr1_1:46727212-46727231 | Msa0024290:intron | 30.0% | |
| ! | CATAGGTTTTTATTGTGAGA+AGG | - | chr1_1:46727229-46727248 | Msa0024290:intron | 30.0% |
| ! | GTTGATATTTTCGTTCGAAA+GGG | + | chr1_1:46727428-46727447 | None:intergenic | 30.0% |
| !! | AGTTGATATTTTCGTTCGAA+AGG | + | chr1_1:46727429-46727448 | None:intergenic | 30.0% |
| CTGATAACACATATAGTGAT+CGG | - | chr1_1:46727521-46727540 | Msa0024290:intron | 30.0% | |
| !!! | GCAATAATTTTGGTTGAAGT+TGG | - | chr1_1:46727661-46727680 | Msa0024290:intron | 30.0% |
| !!! | TTCTGAAGTAACTGTTGTTT+TGG | - | chr1_1:46727706-46727725 | Msa0024290:intron | 30.0% |
| !! | TGAGTTGCTTTAAAATGATG+TGG | - | chr1_1:46728064-46728083 | Msa0024290:intron | 30.0% |
| ! | CTCTCTCAATTGATATTTTG+TGG | + | chr1_1:46728101-46728120 | None:intergenic | 30.0% |
| !!! | TTGTTGTTTTTTGTGCTAAG+GGG | + | chr1_1:46728233-46728252 | None:intergenic | 30.0% |
| !!! | GTTGTTGTTTTTTGTGCTAA+GGG | + | chr1_1:46728234-46728253 | None:intergenic | 30.0% |
| !!! | TGTTGTTGTTTTTTGTGCTA+AGG | + | chr1_1:46728235-46728254 | None:intergenic | 30.0% |
| TAGCACAAAAAACAACAACA+AGG | - | chr1_1:46728235-46728254 | Msa0024290:intron | 30.0% | |
| !! | AAAATTTTAACGCCAAAGAG+TGG | - | chr1_1:46728338-46728357 | Msa0024290:intron | 30.0% |
| !! | AAATTTTAACGCCAAAGAGT+GGG | - | chr1_1:46728339-46728358 | Msa0024290:intron | 30.0% |
| GATGTTTCTTGGATTGTTTA+CGG | + | chr1_1:46728501-46728520 | None:intergenic | 30.0% | |
| TCGCATATTAAGAGATTTCT+TGG | + | chr1_1:46728568-46728587 | None:intergenic | 30.0% | |
| TGATTAAGAAATACAAGTCG+TGG | + | chr1_1:46728644-46728663 | None:intergenic | 30.0% | |
| !!! | TCCGACATTTTTTTTAAGCA+TGG | + | chr1_1:46728813-46728832 | None:intergenic | 30.0% |
| AACAAACTAAATCCTACACT+AGG | + | chr1_1:46728916-46728935 | None:intergenic | 30.0% | |
| TGAGTATTTCTCAATGTCTT+AGG | - | chr1_1:46728967-46728986 | Msa0024290:intron | 30.0% | |
| !!! | CGTGATTTTAGTTATGTTGA+AGG | - | chr1_1:46729108-46729127 | Msa0024290:intron | 30.0% |
| AATGAGATTTATATAGGACG+AGG | + | chr1_1:46729354-46729373 | None:intergenic | 30.0% | |
| TCTCATTTACTCATTCACTA+AGG | - | chr1_1:46729367-46729386 | Msa0024290:intron | 30.0% | |
| !! | GAAGGTGTTCAATTGTATAT+AGG | - | chr1_1:46729534-46729553 | Msa0024290:intron | 30.0% |
| ! | ACCTTAGGATGTGAATTTTT+AGG | - | chr1_1:46729584-46729603 | Msa0024290:intron | 30.0% |
| ! | CCTTAGGATGTGAATTTTTA+GGG | - | chr1_1:46729585-46729604 | Msa0024290:intron | 30.0% |
| GAGGTCTTAAAGTTGTAAAA+TGG | - | chr1_1:46729620-46729639 | Msa0024290:intron | 30.0% | |
| TGTAAAATGGCTAAATTGAC+CGG | - | chr1_1:46729633-46729652 | Msa0024290:intron | 30.0% | |
| CTAATCTTCAATTCAATTCC+CGG | + | chr1_1:46729655-46729674 | None:intergenic | 30.0% | |
| GGAATTGAATTGAAGATTAG+AGG | - | chr1_1:46729655-46729674 | Msa0024290:intron | 30.0% | |
| TTGATTGCGACAAATATTGA+TGG | - | chr1_1:46729762-46729781 | Msa0024290:intron | 30.0% | |
| !! | GCATTGATTCATAATGAGTT+AGG | - | chr1_1:46729784-46729803 | Msa0024290:intron | 30.0% |
| TTCATAATGAGTTAGGATCA+TGG | - | chr1_1:46729791-46729810 | Msa0024290:intron | 30.0% | |
| GAGTTTAACCCAAAAGTTAT+AGG | + | chr1_1:46729989-46730008 | None:intergenic | 30.0% | |
| !!! | ATAACTTTTGGGTTAAACTC+GGG | - | chr1_1:46729989-46730008 | Msa0024290:intron | 30.0% |
| !! | TTCTATTTCTATCTAACCCT+TGG | + | chr1_1:46730080-46730099 | None:intergenic | 30.0% |
| AATTTGCAAAGTCTCATCTA+GGG | + | chr1_1:46730156-46730175 | None:intergenic | 30.0% | |
| ! | TAATTTGCAAAGTCTCATCT+AGG | + | chr1_1:46730157-46730176 | None:intergenic | 30.0% |
| CTAAGAAGAAAAAGTAAACC+GGG | - | chr1_1:46730282-46730301 | Msa0024290:intron | 30.0% | |
| ! | TTCTAAAAAATGGTACCACA+AGG | - | chr1_1:46730510-46730529 | Msa0024290:intron | 30.0% |
| !! | GACTAAAATTGATTTTCCCT+CGG | - | chr1_1:46730543-46730562 | Msa0024290:intron | 30.0% |
| !! | ACTAAAATTGATTTTCCCTC+GGG | - | chr1_1:46730544-46730563 | Msa0024290:intron | 30.0% |
| !! | CATTAGAGTGTAATGGATTA+GGG | - | chr1_1:46730579-46730598 | Msa0024290:intron | 30.0% |
| TATATAGAGATTAGAGGACA+GGG | + | chr1_1:46730753-46730772 | None:intergenic | 30.0% | |
| ATATATAGAGATTAGAGGAC+AGG | + | chr1_1:46730754-46730773 | None:intergenic | 30.0% | |
| !!! | GAGTTTTGAATGTTACATAC+TGG | + | chr1_1:46731124-46731143 | None:intergenic | 30.0% |
| ACTTAATGCTTGAAAAATGC+AGG | - | chr1_1:46731259-46731278 | Msa0024290:intron | 30.0% | |
| !!! | CAGGTTTTTTCTTATTGCAA+TGG | - | chr1_1:46731278-46731297 | Msa0024290:intron | 30.0% |
| ATGATGGCTACTATAGAAAA+AGG | + | chr1_1:46731336-46731355 | None:intergenic | 30.0% | |
| GTTAGAAAATAGAGAGCTTA+CGG | + | chr1_1:46731406-46731425 | None:intergenic | 30.0% | |
| CTAACTCTTGATCATTTCTT+TGG | - | chr1_1:46731421-46731440 | Msa0024290:CDS | 30.0% | |
| !! | ATTTTTCAATCCACTTGGAT+TGG | - | chr1_1:46731644-46731663 | Msa0024290:intron | 30.0% |
| ! | TTTTCTTTGTGGTGCTTATT+AGG | - | chr1_1:46731787-46731806 | Msa0024290:intron | 30.0% |
| TAAAAAAAAATTAGGTGGGC+TGG | - | chr1_1:46731828-46731847 | Msa0024290:intron | 30.0% | |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1_1:46725977-46725996 | Msa0024290:intron | 30.0% |
| TTTGAGTGTTACATACTGGA+AGG | + | chr1_1:46725435-46725454 | None:intergenic | 35.0% | |
| GCTAATACTTGAAACAATGC+AGG | - | chr1_1:46725498-46725517 | Msa0024290:intron | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1_1:46725865-46725884 | None:intergenic | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1_1:46725864-46725883 | Msa0024290:intron | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1_1:46725883-46725902 | Msa0024290:intron | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1_1:46725913-46725932 | None:intergenic | 35.0% | |
| TCAAGCCCTTAATAACATGA+GGG | + | chr1_1:46726260-46726279 | None:intergenic | 35.0% | |
| ATCAAGCCCTTAATAACATG+AGG | + | chr1_1:46726261-46726280 | None:intergenic | 35.0% | |
| TCATGTTATTAAGGGCTTGA+TGG | - | chr1_1:46726260-46726279 | Msa0024290:intron | 35.0% | |
| TGATGGAAGTTTATCCATCA+TGG | - | chr1_1:46726277-46726296 | Msa0024290:CDS | 35.0% | |
| ATAGTGTCTTTCAACCATGA+TGG | + | chr1_1:46726294-46726313 | None:intergenic | 35.0% | |
| ! | GAAGAAGAAATGATGGAATG+AGG | + | chr1_1:46726487-46726506 | None:intergenic | 35.0% |
| GATCAATGAGCAACCTTTAA+GGG | + | chr1_1:46726572-46726591 | None:intergenic | 35.0% | |
| AGATCAATGAGCAACCTTTA+AGG | + | chr1_1:46726573-46726592 | None:intergenic | 35.0% | |
| AATGATAAATTCTTCCGGTG+GGG | - | chr1_1:46726756-46726775 | Msa0024290:intron | 35.0% | |
| AATACTCAACCAAACTTCAG+AGG | - | chr1_1:46727003-46727022 | Msa0024290:intron | 35.0% | |
| TATATCTCACAAATTCCGAC+GGG | - | chr1_1:46727105-46727124 | Msa0024290:intron | 35.0% | |
| ! | TTTTATTGTGAGAAGGATGC+AGG | - | chr1_1:46727236-46727255 | Msa0024290:intron | 35.0% |
| !! | AGAGTATTGGGAACTAGAAA+TGG | - | chr1_1:46727260-46727279 | Msa0024290:intron | 35.0% |
| CGTCTAAATTTCATATGTGG+TGG | + | chr1_1:46727351-46727370 | None:intergenic | 35.0% | |
| TGTAGTCTTTATCCACCAAA+AGG | - | chr1_1:46727383-46727402 | Msa0024290:intron | 35.0% | |
| TTGCTAACATTAATGACCAG+TGG | - | chr1_1:46727464-46727483 | Msa0024290:intron | 35.0% | |
| ATTTATTAGAGCAACTCCAG+CGG | - | chr1_1:46727586-46727605 | Msa0024290:intron | 35.0% | |
| !!! | GTTCTTTTAAAGTTCACCGT+TGG | - | chr1_1:46728028-46728047 | Msa0024290:intron | 35.0% |
| !!! | TCACTTATTTTGCACTCCAA+CGG | + | chr1_1:46728047-46728066 | None:intergenic | 35.0% |
| TTGAGAGAGTTCATCATTTG+AGG | - | chr1_1:46728112-46728131 | Msa0024290:intron | 35.0% | |
| !!! | TGTTGTTTTTTGTGCTAAGG+GGG | + | chr1_1:46728232-46728251 | None:intergenic | 35.0% |
| TTATCCGTTTCGGAGTTATT+TGG | + | chr1_1:46728264-46728283 | None:intergenic | 35.0% | |
| ! | TTGTCTTGATTTTGTCTAGG+TGG | + | chr1_1:46728319-46728338 | None:intergenic | 35.0% |
| TTGATCAATAAAGTGCGCTT+TGG | + | chr1_1:46728402-46728421 | None:intergenic | 35.0% | |
| AAGAACAAGTGACTGAAGAT+CGG | - | chr1_1:46728420-46728439 | Msa0024290:intron | 35.0% | |
| ! | GAGTAGTAGTTGATGTTTCT+TGG | + | chr1_1:46728512-46728531 | None:intergenic | 35.0% |
| TCTCAAAATCCTAGTCTGTT+TGG | + | chr1_1:46728540-46728559 | None:intergenic | 35.0% | |
| GCTCTTTAGTTGTGTGTTAT+CGG | + | chr1_1:46728592-46728611 | None:intergenic | 35.0% | |
| GACATATTTGAGCTGATCTA+AGG | + | chr1_1:46728675-46728694 | None:intergenic | 35.0% | |
| AGCTTCAAGAGTGGAAATAT+TGG | + | chr1_1:46728720-46728739 | None:intergenic | 35.0% | |
| TCGTCATAGCGATCAATAAA+TGG | + | chr1_1:46728765-46728784 | None:intergenic | 35.0% | |
| TGTTAGTATGAATCCAGAAG+TGG | + | chr1_1:46728837-46728856 | None:intergenic | 35.0% | |
| TGGATTCATACTAACAACCA+AGG | - | chr1_1:46728841-46728860 | Msa0024290:intron | 35.0% | |
| AGTTATGTTGAAGGGTGATT+TGG | - | chr1_1:46729117-46729136 | Msa0024290:intron | 35.0% | |
| ATTCAAATCGCATCTCTTTG+CGG | + | chr1_1:46729256-46729275 | None:intergenic | 35.0% | |
| ! | TTTTTATCCTTTGATGTGGG+TGG | - | chr1_1:46729446-46729465 | Msa0024290:intron | 35.0% |
| CCCTAAAAATTCACATCCTA+AGG | + | chr1_1:46729588-46729607 | None:intergenic | 35.0% | |
| GTAAAATGGCTAAATTGACC+GGG | - | chr1_1:46729634-46729653 | Msa0024290:intron | 35.0% | |
| AATTGAAGATTAGAGGTCGA+AGG | - | chr1_1:46729662-46729681 | Msa0024290:intron | 35.0% | |
| ! | AAGTAAGGATTAAGTTGTCC+CGG | + | chr1_1:46730303-46730322 | None:intergenic | 35.0% |
| AAGCATCCATTAGAGTGTAA+TGG | - | chr1_1:46730572-46730591 | Msa0024290:intron | 35.0% | |
| CCTAATCCATTACACTCTAA+TGG | + | chr1_1:46730581-46730600 | None:intergenic | 35.0% | |
| !! | CCATTAGAGTGTAATGGATT+AGG | - | chr1_1:46730578-46730597 | Msa0024290:intron | 35.0% |
| TGGTATCTTTGCTTGATTCT+TGG | + | chr1_1:46730899-46730918 | None:intergenic | 35.0% | |
| GAATCAAGCAAAGATACCAA+AGG | - | chr1_1:46730900-46730919 | Msa0024290:intron | 35.0% | |
| ! | TACCAAAGGAAAAGCTGTTT+TGG | - | chr1_1:46730914-46730933 | Msa0024290:intron | 35.0% |
| ! | AACCAAAACAGCTTTTCCTT+TGG | + | chr1_1:46730919-46730938 | None:intergenic | 35.0% |
| AATGTTACATACTGGAATGC+AGG | + | chr1_1:46731116-46731135 | None:intergenic | 35.0% | |
| TCTTATTGCAATGGCAATAG+TGG | - | chr1_1:46731287-46731306 | Msa0024290:intron | 35.0% | |
| ! | CTTATATTTGAGACTGTAGG+TGG | + | chr1_1:46731464-46731483 | None:intergenic | 35.0% |
| TAGATGTTTACTACTCGCTT+CGG | + | chr1_1:46731581-46731600 | None:intergenic | 35.0% | |
| TTTGTGGTGCTTATAATTGC+AGG | - | chr1_1:46731889-46731908 | Msa0024290:CDS | 35.0% | |
| ATTGCAGGTATTTCTTACTC+TGG | - | chr1_1:46731904-46731923 | Msa0024290:CDS | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1_1:46725865-46725884 | None:intergenic | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1_1:46725864-46725883 | Msa0024290:intron | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1_1:46725883-46725902 | Msa0024290:intron | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1_1:46725913-46725932 | None:intergenic | 35.0% | |
| GTGCACAAAAATCTCCAAAT+TGG | + | chr1_1:46732015-46732034 | None:intergenic | 35.0% | |
| TGTGGCATCATTTATTACTG+TGG | - | chr1_1:46732051-46732070 | Msa0024290:CDS | 35.0% | |
| ! | CAATTCTAGTTGCACCTACA+AGG | - | chr1_1:46725246-46725265 | Msa0024290:CDS | 40.0% |
| GAAAAAGGGAACAGCCATAA+TGG | - | chr1_1:46725280-46725299 | Msa0024290:CDS | 40.0% | |
| TGGTAGGGATAGAACTAAGT+AGG | + | chr1_1:46725555-46725574 | None:intergenic | 40.0% | |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1_1:46725854-46725873 | Msa0024290:intron | 40.0% | |
| ! | CTTGCCATTTGCAACCAATT+TGG | - | chr1_1:46725906-46725925 | Msa0024290:intron | 40.0% |
| GTGCACAGAAATCTCCAAAT+TGG | + | chr1_1:46725923-46725942 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTCATCGTGTTGTG+AGG | + | chr1_1:46726345-46726364 | None:intergenic | 40.0% |
| !! | AGTGGATTATCCACCCTTAA+AGG | - | chr1_1:46726556-46726575 | Msa0024290:intron | 40.0% |
| ATGCTAACTTAATGTCCCTG+GGG | + | chr1_1:46726722-46726741 | None:intergenic | 40.0% | |
| CATGCTAACTTAATGTCCCT+GGG | + | chr1_1:46726723-46726742 | None:intergenic | 40.0% | |
| TCATGCTAACTTAATGTCCC+TGG | + | chr1_1:46726724-46726743 | None:intergenic | 40.0% | |
| !! | TAAGCGATACCTCTGAAGTT+TGG | + | chr1_1:46727015-46727034 | None:intergenic | 40.0% |
| TTTAATAACCAGATGCCCGT+CGG | + | chr1_1:46727123-46727142 | None:intergenic | 40.0% | |
| ! | AAGGATGCAGGTAGAGTATT+GGG | - | chr1_1:46727248-46727267 | Msa0024290:intron | 40.0% |
| TTGTAATGTCGCTAAACCAC+TGG | + | chr1_1:46727483-46727502 | None:intergenic | 40.0% | |
| CACGTGGAGATTGAAAAAGT+GGG | - | chr1_1:46727631-46727650 | Msa0024290:intron | 40.0% | |
| GATGCCAAATAACTCCGAAA+CGG | - | chr1_1:46728257-46728276 | Msa0024290:intron | 40.0% | |
| GTGGTGTTTAGTTGTTCTCT+TGG | + | chr1_1:46728300-46728319 | None:intergenic | 40.0% | |
| ATCAATAAAGTGCGCTTTGG+TGG | + | chr1_1:46728399-46728418 | None:intergenic | 40.0% | |
| TTCAAATCGCATCTCTTTGC+GGG | + | chr1_1:46729255-46729274 | None:intergenic | 40.0% | |
| ACAATTACCACCCACATCAA+AGG | + | chr1_1:46729456-46729475 | None:intergenic | 40.0% | |
| !!! | TTTAGGGTTTTTAGGTCGTG+AGG | - | chr1_1:46729601-46729620 | Msa0024290:intron | 40.0% |
| ! | AGTTAGGATCATGGTACTGA+AGG | - | chr1_1:46729800-46729819 | Msa0024290:intron | 40.0% |
| GGTCCACTTATAACATCAGT+GGG | - | chr1_1:46730010-46730029 | Msa0024290:intron | 40.0% | |
| CAACCCACTGATGTTATAAG+TGG | + | chr1_1:46730016-46730035 | None:intergenic | 40.0% | |
| !! | ATAACATCAGTGGGTTGAGT+AGG | - | chr1_1:46730019-46730038 | Msa0024290:intron | 40.0% |
| !! | AGACTACGTGGATTAGTTCA+TGG | - | chr1_1:46730602-46730621 | Msa0024290:intron | 40.0% |
| ! | GAAAAAGGGCATAGCCATAA+TGG | - | chr1_1:46730965-46730984 | Msa0024290:intron | 40.0% |
| AGGATGATGAGAAAAAGCCT+TGG | + | chr1_1:46731378-46731397 | None:intergenic | 40.0% | |
| TTATGCTAATACTAGCGTGC+AGG | + | chr1_1:46731615-46731634 | None:intergenic | 40.0% | |
| !! | GTGGTATTGACTTGTGATCT+GGG | - | chr1_1:46731671-46731690 | Msa0024290:intron | 40.0% |
| ATTCTCTCCAGTGCCAATTT+AGG | - | chr1_1:46731724-46731743 | Msa0024290:intron | 40.0% | |
| TTAAACCAGCCCACCTAAAT+TGG | + | chr1_1:46731740-46731759 | None:intergenic | 40.0% | |
| TCTTTGTGGTGCTTATTAGG+TGG | - | chr1_1:46731790-46731809 | Msa0024290:intron | 40.0% | |
| CTTTGTGGTGCTTATTAGGT+GGG | - | chr1_1:46731791-46731810 | Msa0024290:intron | 40.0% | |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1_1:46725854-46725873 | Msa0024290:intron | 40.0% | |
| ! | CTTGCCATTTGCAACCAATT+TGG | - | chr1_1:46725906-46725925 | Msa0024290:intron | 40.0% |
| ! | GATTTTTGTGCACAGACAAG+TGG | - | chr1_1:46732022-46732041 | Msa0024290:CDS | 40.0% |
| !! | GCTTGATTCTGGGACATCAA+TGG | + | chr1_1:46725207-46725226 | None:intergenic | 45.0% |
| ATCACTTGTTCCCATTGAGG+CGG | + | chr1_1:46725351-46725370 | None:intergenic | 45.0% | |
| CTGATCACTTGTTCCCATTG+AGG | + | chr1_1:46725354-46725373 | None:intergenic | 45.0% | |
| ATGATGGCTACGACAGAGAA+TGG | + | chr1_1:46725575-46725594 | None:intergenic | 45.0% | |
| ATAAGGAAAAGCCTTGGTCC+AGG | + | chr1_1:46725611-46725630 | None:intergenic | 45.0% | |
| GATTTCTGTGCACAGACAAG+TGG | - | chr1_1:46725930-46725949 | Msa0024290:intron | 45.0% | |
| GTTGGTTGTGATGTCTGCTT+TGG | - | chr1_1:46725995-46726014 | Msa0024290:intron | 45.0% | |
| !! | TGATGTCTGCTTTGGCTCTT+GGG | - | chr1_1:46726003-46726022 | Msa0024290:intron | 45.0% |
| ! | CAATGAGCAACCTTTAAGGG+TGG | + | chr1_1:46726569-46726588 | None:intergenic | 45.0% |
| ! | TTTCTTTAACGGATGCCCCA+GGG | - | chr1_1:46726704-46726723 | Msa0024290:intron | 45.0% |
| AGATGAAGGGCTAATGCAAG+TGG | - | chr1_1:46726780-46726799 | Msa0024290:intron | 45.0% | |
| GATGAAGGGCTAATGCAAGT+GGG | - | chr1_1:46726781-46726800 | Msa0024290:intron | 45.0% | |
| !! | ACTTCAGAGGTATCGCTTAC+CGG | - | chr1_1:46727016-46727035 | Msa0024290:intron | 45.0% |
| GAAGGATGCAGGTAGAGTAT+TGG | - | chr1_1:46727247-46727266 | Msa0024290:intron | 45.0% | |
| CCGTTTGTTTGTCTGAGCAT+CGG | + | chr1_1:46727322-46727341 | None:intergenic | 45.0% | |
| CCGATGCTCAGACAAACAAA+CGG | - | chr1_1:46727319-46727338 | Msa0024290:intron | 45.0% | |
| CATTGAAAACTTGAGACCGC+TGG | + | chr1_1:46727605-46727624 | None:intergenic | 45.0% | |
| ! | CAGCGGTCTCAAGTTTTCAA+TGG | - | chr1_1:46727603-46727622 | Msa0024290:intron | 45.0% |
| !!! | CTTTTTCAATCTCCACGTGG+CGG | + | chr1_1:46727630-46727649 | None:intergenic | 45.0% |
| !!! | CCACTTTTTCAATCTCCACG+TGG | + | chr1_1:46727633-46727652 | None:intergenic | 45.0% |
| CCACGTGGAGATTGAAAAAG+TGG | - | chr1_1:46727630-46727649 | Msa0024290:intron | 45.0% | |
| GGCAAGATCAAAGATTGCAG+AGG | - | chr1_1:46728200-46728219 | Msa0024290:intron | 45.0% | |
| ! | TTTTAACGCCAAAGAGTGGG+AGG | - | chr1_1:46728342-46728361 | Msa0024290:intron | 45.0% |
| CGGAAAGAAAGAGACACCTT+AGG | - | chr1_1:46728440-46728459 | Msa0024290:intron | 45.0% | |
| ! | AATCCTAGTCTGTTTGGCTC+TGG | + | chr1_1:46728534-46728553 | None:intergenic | 45.0% |
| GAGTGGAAATATTGGCAGCA+AGG | + | chr1_1:46728712-46728731 | None:intergenic | 45.0% | |
| AAAAATGTCGGAGCCACTTC+TGG | - | chr1_1:46728821-46728840 | Msa0024290:intron | 45.0% | |
| ATCCTACACTAGGAGAGACA+TGG | + | chr1_1:46728906-46728925 | None:intergenic | 45.0% | |
| ! | AGGGTGATTTGGATCATGCT+CGG | - | chr1_1:46729128-46729147 | Msa0024290:intron | 45.0% |
| ! | GTCGCAGCCCTATAACTTTT+GGG | - | chr1_1:46729978-46729997 | Msa0024290:intron | 45.0% |
| GGGTCCACTTATAACATCAG+TGG | - | chr1_1:46730009-46730028 | Msa0024290:intron | 45.0% | |
| !! | AGCTGGTCAAGTTGGAGAAA+AGG | + | chr1_1:46730056-46730075 | None:intergenic | 45.0% |
| TCTATCTAACCCTTGGAAGC+TGG | + | chr1_1:46730073-46730092 | None:intergenic | 45.0% | |
| !! | AATGGATTAGGGAGACTACG+TGG | - | chr1_1:46730590-46730609 | Msa0024290:intron | 45.0% |
| TTGATCACTTGTTCCCATCG+AGG | + | chr1_1:46731039-46731058 | None:intergenic | 45.0% | |
| ATTGCAATGGCAATAGTGGC+TGG | - | chr1_1:46731291-46731310 | Msa0024290:intron | 45.0% | |
| ATAGAGAGCTTACGGTGTCT+AGG | + | chr1_1:46731398-46731417 | None:intergenic | 45.0% | |
| GATCACAAGTCAATACCACC+AGG | + | chr1_1:46731670-46731689 | None:intergenic | 45.0% | |
| !! | GGTGGTATTGACTTGTGATC+TGG | - | chr1_1:46731670-46731689 | Msa0024290:intron | 45.0% |
| TCTCCAGTGCCAATTTAGGT+GGG | - | chr1_1:46731728-46731747 | Msa0024290:intron | 45.0% | |
| TGATGTCTGCCTTGGCTATT+GGG | - | chr1_1:46732095-46732114 | Msa0024290:CDS | 45.0% | |
| TCAATGCTTCCCAATAGCCA+AGG | + | chr1_1:46732107-46732126 | None:intergenic | 45.0% | |
| !! | AATTTATCATTAAAAAATAA+GGG | + | chr1_1:46726747-46726766 | None:intergenic | 5.0% |
| AAGGCCTGGAGGATGGAAAA+AGG | - | chr1_1:46725265-46725284 | Msa0024290:CDS | 50.0% | |
| AGGCCTGGAGGATGGAAAAA+GGG | - | chr1_1:46725266-46725285 | Msa0024290:CDS | 50.0% | |
| ! | GTTCCCTTTTTCCATCCTCC+AGG | + | chr1_1:46725272-46725291 | None:intergenic | 50.0% |
| ! | AAGGTTAGGTGCCATAGCAG+CGG | - | chr1_1:46725313-46725332 | Msa0024290:CDS | 50.0% |
| GGCTACGACAGAGAATGGTA+GGG | + | chr1_1:46725570-46725589 | None:intergenic | 50.0% | |
| TGGCTACGACAGAGAATGGT+AGG | + | chr1_1:46725571-46725590 | None:intergenic | 50.0% | |
| !! | GTGATGTCTGCTTTGGCTCT+TGG | - | chr1_1:46726002-46726021 | Msa0024290:intron | 50.0% |
| ! | GTTTCTTTAACGGATGCCCC+AGG | - | chr1_1:46726703-46726722 | Msa0024290:intron | 50.0% |
| ACTTTGGACCTCCCACTCTT+TGG | + | chr1_1:46728353-46728372 | None:intergenic | 50.0% | |
| TGGCTTGAAGCGAGATCCTA+AGG | + | chr1_1:46728459-46728478 | None:intergenic | 50.0% | |
| AGCCACTAACGAGCTACTGA+AGG | - | chr1_1:46728474-46728493 | Msa0024290:intron | 50.0% | |
| GTCCTTCAGTAGCTCGTTAG+TGG | + | chr1_1:46728479-46728498 | None:intergenic | 50.0% | |
| ACTCCAGAGCCAAACAGACT+AGG | - | chr1_1:46728528-46728547 | Msa0024290:intron | 50.0% | |
| !! | CAGCAAGGTGCATCGATTTG+AGG | + | chr1_1:46728697-46728716 | None:intergenic | 50.0% |
| ! | GGCAGCTTTAGCTTCAAGAG+TGG | + | chr1_1:46728729-46728748 | None:intergenic | 50.0% |
| CTAACAACCAAGGACACACG+TGG | - | chr1_1:46728851-46728870 | Msa0024290:intron | 50.0% | |
| GTCCATGTCTCTCCTAGTGT+AGG | - | chr1_1:46728901-46728920 | Msa0024290:intron | 50.0% | |
| ! | GGGTGATTTGGATCATGCTC+GGG | - | chr1_1:46729129-46729148 | Msa0024290:intron | 50.0% |
| GAGGTCGAAGGCTTCAAGAT+TGG | - | chr1_1:46729674-46729693 | Msa0024290:intron | 50.0% | |
| ! | TTGATTCTAAGGGGGAGTGC+AGG | - | chr1_1:46729956-46729975 | Msa0024290:intron | 50.0% |
| ! | GGTCGCAGCCCTATAACTTT+TGG | - | chr1_1:46729977-46729996 | Msa0024290:intron | 50.0% |
| TCCAACTTGACCAGCTTCCA+AGG | - | chr1_1:46730060-46730079 | Msa0024290:intron | 50.0% | |
| CCAACTTGACCAGCTTCCAA+GGG | - | chr1_1:46730061-46730080 | Msa0024290:intron | 50.0% | |
| ATGGTACCACAAGGAGCTTG+TGG | - | chr1_1:46730519-46730538 | Msa0024290:intron | 50.0% | |
| TAGTCTCCACAAGCTCCTTG+TGG | + | chr1_1:46730528-46730547 | None:intergenic | 50.0% | |
| ATGGATGCTTTGTCACCCGA+GGG | + | chr1_1:46730562-46730581 | None:intergenic | 50.0% | |
| AATGGATGCTTTGTCACCCG+AGG | + | chr1_1:46730563-46730582 | None:intergenic | 50.0% | |
| !! | TTTTGGTTGCAGCACCTGCA+AGG | - | chr1_1:46730931-46730950 | Msa0024290:intron | 50.0% |
| AAGGCCAGGAGGATGGAAAA+AGG | - | chr1_1:46730950-46730969 | Msa0024290:intron | 50.0% | |
| AGGCCAGGAGGATGGAAAAA+GGG | - | chr1_1:46730951-46730970 | Msa0024290:intron | 50.0% | |
| ! | ATGCCCTTTTTCCATCCTCC+TGG | + | chr1_1:46730957-46730976 | None:intergenic | 50.0% |
| ATCACTTGTTCCCATCGAGG+CGG | + | chr1_1:46731036-46731055 | None:intergenic | 50.0% | |
| ! | GGCAATAGTGGCTGGCTATT+TGG | - | chr1_1:46731299-46731318 | Msa0024290:intron | 50.0% |
| AGTTGCATGGGGACGTATGA+TGG | + | chr1_1:46731352-46731371 | None:intergenic | 50.0% | |
| ATCATACGTCCCCATGCAAC+TGG | - | chr1_1:46731351-46731370 | Msa0024290:CDS | 50.0% | |
| AAGCCTTGGTCCAGTTGCAT+GGG | + | chr1_1:46731364-46731383 | None:intergenic | 50.0% | |
| AAAGCCTTGGTCCAGTTGCA+TGG | + | chr1_1:46731365-46731384 | None:intergenic | 50.0% | |
| !! | TCAATCCACTTGGATTGGCC+TGG | - | chr1_1:46731649-46731668 | Msa0024290:intron | 50.0% |
| CTCTCCAGTGCCAATTTAGG+TGG | - | chr1_1:46731727-46731746 | Msa0024290:intron | 50.0% | |
| ACAGACAAGTGGAGCAGTTG+TGG | - | chr1_1:46732033-46732052 | Msa0024290:CDS | 50.0% | |
| GTTGGTTGTGATGTCTGCCT+TGG | - | chr1_1:46732087-46732106 | Msa0024290:CDS | 50.0% | |
| GTGATGTCTGCCTTGGCTAT+TGG | - | chr1_1:46732094-46732113 | Msa0024290:CDS | 50.0% | |
| CTAGTTGCACCTACAAGGCC+TGG | - | chr1_1:46725251-46725270 | Msa0024290:CDS | 55.0% | |
| ! | TTCCATCCTCCAGGCCTTGT+AGG | + | chr1_1:46725263-46725282 | None:intergenic | 55.0% |
| AGCTGCAGCAGCACTTGAAG+TGG | + | chr1_1:46725838-46725857 | None:intergenic | 55.0% | |
| TCTTCCGGTGGGGTAGATGA+AGG | - | chr1_1:46726766-46726785 | Msa0024290:intron | 55.0% | |
| CTTCCGGTGGGGTAGATGAA+GGG | - | chr1_1:46726767-46726786 | Msa0024290:intron | 55.0% | |
| TAGCCCTTCATCTACCCCAC+CGG | + | chr1_1:46726773-46726792 | None:intergenic | 55.0% | |
| CACAAATTCCGACGGGCATC+TGG | - | chr1_1:46727112-46727131 | Msa0024290:intron | 55.0% | |
| ! | GTTTTCAATGGTCCGCCACG+TGG | - | chr1_1:46727615-46727634 | Msa0024290:intron | 55.0% |
| ACAACCAAGGACACACGTGG+TGG | - | chr1_1:46728854-46728873 | Msa0024290:intron | 55.0% | |
| ACATCCACCACGTGTGTCCT+TGG | + | chr1_1:46728861-46728880 | None:intergenic | 55.0% | |
| !! | GACACACGTGGTGGATGTGT+TGG | - | chr1_1:46728863-46728882 | Msa0024290:intron | 55.0% |
| !! | CGTGGTGGATGTGTTGGTAG+AGG | - | chr1_1:46728869-46728888 | Msa0024290:intron | 55.0% |
| CCCTTGGAAGCTGGTCAAGT+TGG | + | chr1_1:46730064-46730083 | None:intergenic | 55.0% | |
| AGCCTTGGTCCAGTTGCATG+GGG | + | chr1_1:46731363-46731382 | None:intergenic | 55.0% | |
| !! | ATCCACTTGGATTGGCCTGG+TGG | - | chr1_1:46731652-46731671 | Msa0024290:intron | 55.0% |
| TACCACCAGGCCAATCCAAG+TGG | + | chr1_1:46731657-46731676 | None:intergenic | 55.0% | |
| GAATCGAACCTGAGACCTCG+AGG | + | chr1_1:46731708-46731727 | None:intergenic | 55.0% | |
| CAGCCCACCTAAATTGGCAC+TGG | + | chr1_1:46731734-46731753 | None:intergenic | 55.0% | |
| CAGTGCCAATTTAGGTGGGC+TGG | - | chr1_1:46731732-46731751 | Msa0024290:intron | 55.0% | |
| GTGGTGCTTATTAGGTGGGC+TGG | - | chr1_1:46731795-46731814 | Msa0024290:intron | 55.0% | |
| GTTGCACCTACAAGGCCTGG+AGG | - | chr1_1:46725254-46725273 | Msa0024290:CDS | 60.0% | |
| CACCTACAAGGCCTGGAGGA+TGG | - | chr1_1:46725258-46725277 | Msa0024290:CDS | 60.0% | |
| AGCGGCAATAGCCGCTGCTA+TGG | + | chr1_1:46725327-46725346 | None:intergenic | 60.0% | |
| TATTGCCGCTGCCGCCTCAA+TGG | - | chr1_1:46725337-46725356 | Msa0024290:CDS | 60.0% | |
| ATTGCCGCTGCCGCCTCAAT+GGG | - | chr1_1:46725338-46725357 | Msa0024290:CDS | 60.0% | |
| TGTTCCCATTGAGGCGGCAG+CGG | + | chr1_1:46725345-46725364 | None:intergenic | 60.0% | |
| AAGCCTTGGTCCAGGCGCAT+GGG | + | chr1_1:46725603-46725622 | None:intergenic | 60.0% | |
| AAAGCCTTGGTCCAGGCGCA+TGG | + | chr1_1:46725604-46725623 | None:intergenic | 60.0% | |
| !! | TTCCATCCTCCTGGCCTTGC+AGG | + | chr1_1:46730948-46730967 | None:intergenic | 60.0% |
| AGCGGCAAGAGCTGCTGCTA+TGG | + | chr1_1:46731012-46731031 | None:intergenic | 60.0% | |
| GTCCCCATGCAACTGGACCA+AGG | - | chr1_1:46731358-46731377 | Msa0024290:CDS | 60.0% | |
| TCGAACCTGAGACCTCGAGG+AGG | + | chr1_1:46731705-46731724 | None:intergenic | 60.0% | |
| AGGCGCATGGGGGCGAATGA+TGG | + | chr1_1:46725591-46725610 | None:intergenic | 65.0% | |
| ATCATTCGCCCCCATGCGCC+TGG | - | chr1_1:46725590-46725609 | Msa0024290:intron | 65.0% | |
| AGCCTTGGTCCAGGCGCATG+GGG | + | chr1_1:46725602-46725621 | None:intergenic | 65.0% | |
| GTTGCAGCACCTGCAAGGCC+AGG | - | chr1_1:46730936-46730955 | Msa0024290:intron | 65.0% | |
| CACCTGCAAGGCCAGGAGGA+TGG | - | chr1_1:46730943-46730962 | Msa0024290:intron | 65.0% | |
| TGTTCCCATCGAGGCGGCAG+CGG | + | chr1_1:46731030-46731049 | None:intergenic | 65.0% | |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | - | chr1_1:46731690-46731709 | Msa0024290:intron | 65.0% |
| GTGCTCCTCCTCGAGGTCTC+AGG | - | chr1_1:46731697-46731716 | Msa0024290:intron | 65.0% | |
| GCCTTGGTCCAGGCGCATGG+GGG | + | chr1_1:46725601-46725620 | None:intergenic | 70.0% | |
| GCAGCACCTGCAAGGCCAGG+AGG | - | chr1_1:46730939-46730958 | Msa0024290:intron | 70.0% | |
| TCTTGCCGCTGCCGCCTCGA+TGG | - | chr1_1:46731022-46731041 | Msa0024290:intron | 70.0% | |
| CTTGCCGCTGCCGCCTCGAT+GGG | - | chr1_1:46731023-46731042 | Msa0024290:intron | 70.0% | |
| GCCCCCATGCGCCTGGACCA+AGG | - | chr1_1:46725597-46725616 | Msa0024290:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46725194 | 46732126 | 46725194 | ID=Msa0024290;Name=Msa0024290 |
| chr1_1 | mRNA | 46725194 | 46732126 | 46725194 | ID=Msa0024290-mRNA-1;Parent=Msa0024290;Name=Msa0024290-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.25|0.2|5|0|268 |
| chr1_1 | exon | 46731882 | 46732126 | 46731882 | ID=Msa0024290-mRNA-1:exon:13318;Parent=Msa0024290-mRNA-1 |
| chr1_1 | exon | 46731737 | 46731800 | 46731737 | ID=Msa0024290-mRNA-1:exon:13317;Parent=Msa0024290-mRNA-1 |
| chr1_1 | exon | 46731314 | 46731501 | 46731314 | ID=Msa0024290-mRNA-1:exon:13316;Parent=Msa0024290-mRNA-1 |
| chr1_1 | exon | 46726270 | 46726412 | 46726270 | ID=Msa0024290-mRNA-1:exon:13315;Parent=Msa0024290-mRNA-1 |
| chr1_1 | exon | 46725194 | 46725360 | 46725194 | ID=Msa0024290-mRNA-1:exon:13314;Parent=Msa0024290-mRNA-1 |
| chr1_1 | CDS | 46731882 | 46732126 | 46731882 | ID=Msa0024290-mRNA-1:cds;Parent=Msa0024290-mRNA-1 |
| chr1_1 | CDS | 46731737 | 46731800 | 46731737 | ID=Msa0024290-mRNA-1:cds;Parent=Msa0024290-mRNA-1 |
| chr1_1 | CDS | 46731314 | 46731501 | 46731314 | ID=Msa0024290-mRNA-1:cds;Parent=Msa0024290-mRNA-1 |
| chr1_1 | CDS | 46726270 | 46726412 | 46726270 | ID=Msa0024290-mRNA-1:cds;Parent=Msa0024290-mRNA-1 |
| chr1_1 | CDS | 46725194 | 46725360 | 46725194 | ID=Msa0024290-mRNA-1:cds;Parent=Msa0024290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
