Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801860 | XP_024640978.1 | 97.393 | 537 | 14 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1069 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801860 | sp|F4I9E1|NFD4_ARATH | 31.481 | 540 | 335 | 13 | 12 | 528 | 42 | 569 | 9.79e-69 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801860 | G7JXI0 | 97.393 | 537 | 14 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1069 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059880 | Msa0801860 | 0.817201 | 3.728565e-52 | -8.615850e-47 |
| Msa0100200 | Msa0801860 | 0.804479 | 2.118019e-49 | -8.615850e-47 |
| Msa0609720 | Msa0801860 | 0.805836 | 1.101260e-49 | -8.615850e-47 |
| Msa0631700 | Msa0801860 | 0.822652 | 2.112522e-53 | -8.615850e-47 |
| Msa0650310 | Msa0801860 | 0.819880 | 9.207466e-53 | -8.615850e-47 |
| Msa0650440 | Msa0801860 | 0.812674 | 3.764981e-51 | -8.615850e-47 |
| Msa0652610 | Msa0801860 | 0.817846 | 2.668535e-52 | -8.615850e-47 |
| Msa0670360 | Msa0801860 | 0.811050 | 8.497022e-51 | -8.615850e-47 |
| Msa0671490 | Msa0801860 | 0.803470 | 3.433721e-49 | -8.615850e-47 |
| Msa0717610 | Msa0801860 | 0.969792 | 1.203619e-130 | -8.615850e-47 |
| Msa0727230 | Msa0801860 | 0.806494 | 8.006731e-50 | -8.615850e-47 |
| Msa0772350 | Msa0801860 | 0.807979 | 3.879126e-50 | -8.615850e-47 |
| Msa0801860 | Msa0826360 | 0.806237 | 9.068119e-50 | -8.615850e-47 |
| Msa0801860 | Msa0863840 | 0.805748 | 1.149185e-49 | -8.615850e-47 |
| Msa0801860 | Msa0945320 | 0.813144 | 2.969925e-51 | -8.615850e-47 |
| Msa0801860 | Msa1037360 | 0.803299 | 3.724582e-49 | -8.615850e-47 |
| Msa0801860 | Msa1123000 | 0.815988 | 6.969678e-52 | -8.615850e-47 |
| Msa0801860 | Msa1214960 | 0.804502 | 2.095092e-49 | -8.615850e-47 |
| Msa0801860 | Msa1355340 | 0.814387 | 1.581388e-51 | -8.615850e-47 |
| Msa0801860 | Msa1359520 | 0.803739 | 3.018955e-49 | -8.615850e-47 |
| Msa0801860 | Msa1395150 | 0.800562 | 1.359588e-48 | -8.615850e-47 |
| Msa0150910 | Msa0801860 | 0.808892 | 2.477512e-50 | -8.615850e-47 |
| Msa0210850 | Msa0801860 | 0.805221 | 1.482262e-49 | -8.615850e-47 |
| Msa0398770 | Msa0801860 | 0.813455 | 2.537852e-51 | -8.615850e-47 |
| Msa0464310 | Msa0801860 | 0.805960 | 1.036949e-49 | -8.615850e-47 |
| Msa0319830 | Msa0801860 | 0.807052 | 6.102545e-50 | -8.615850e-47 |
| Msa0535570 | Msa0801860 | 0.823222 | 1.555431e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801860 | MtrunA17_Chr5g0405621 | 97.393 | 537 | 14 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1069 |
| Msa0801860 | MtrunA17_Chr4g0037301 | 63.498 | 526 | 182 | 4 | 11 | 526 | 13 | 538 | 0.0 | 671 |
| Msa0801860 | MtrunA17_Chr2g0304561 | 36.563 | 547 | 309 | 6 | 14 | 525 | 13 | 556 | 4.94e-111 | 342 |
| Msa0801860 | MtrunA17_Chr4g0064981 | 34.539 | 553 | 319 | 7 | 14 | 525 | 12 | 562 | 4.30e-107 | 332 |
| Msa0801860 | MtrunA17_Chr7g0225191 | 33.741 | 572 | 316 | 6 | 12 | 525 | 14 | 580 | 1.61e-105 | 328 |
| Msa0801860 | MtrunA17_Chr3g0132161 | 34.705 | 559 | 315 | 12 | 7 | 525 | 9 | 557 | 2.10e-101 | 317 |
| Msa0801860 | MtrunA17_Chr5g0442481 | 34.717 | 530 | 324 | 8 | 12 | 528 | 10 | 530 | 1.19e-96 | 303 |
| Msa0801860 | MtrunA17_Chr2g0330551 | 32.486 | 551 | 325 | 11 | 8 | 528 | 2 | 535 | 3.18e-91 | 289 |
| Msa0801860 | MtrunA17_Chr1g0210274 | 32.965 | 543 | 330 | 8 | 8 | 522 | 21 | 557 | 2.23e-87 | 281 |
| Msa0801860 | MtrunA17_Chr1g0210284 | 32.413 | 543 | 333 | 9 | 8 | 522 | 21 | 557 | 2.34e-87 | 281 |
| Msa0801860 | MtrunA17_Chr1g0174101 | 30.824 | 558 | 343 | 9 | 13 | 535 | 24 | 573 | 6.11e-87 | 280 |
| Msa0801860 | MtrunA17_Chr1g0210291 | 33.393 | 557 | 325 | 11 | 13 | 536 | 25 | 568 | 6.62e-87 | 280 |
| Msa0801860 | MtrunA17_Chr7g0264861 | 31.365 | 542 | 339 | 7 | 13 | 522 | 29 | 569 | 1.08e-83 | 272 |
| Msa0801860 | MtrunA17_Chr1g0171591 | 30.642 | 545 | 339 | 7 | 13 | 522 | 24 | 564 | 4.58e-83 | 270 |
| Msa0801860 | MtrunA17_Chr7g0251871 | 31.866 | 568 | 336 | 17 | 11 | 536 | 5 | 563 | 2.95e-76 | 251 |
| Msa0801860 | MtrunA17_Chr5g0408921 | 31.469 | 572 | 337 | 15 | 11 | 534 | 5 | 569 | 1.27e-73 | 244 |
| Msa0801860 | MtrunA17_Chr8g0369621 | 30.769 | 572 | 343 | 13 | 11 | 535 | 46 | 611 | 2.16e-73 | 244 |
| Msa0801860 | MtrunA17_Chr3g0106801 | 30.989 | 526 | 334 | 11 | 13 | 525 | 7 | 516 | 2.82e-64 | 218 |
| Msa0801860 | MtrunA17_Chr3g0106821 | 31.383 | 376 | 246 | 6 | 13 | 382 | 7 | 376 | 2.32e-51 | 180 |
| Msa0801860 | MtrunA17_Chr2g0333371 | 28.963 | 328 | 172 | 8 | 236 | 537 | 12 | 304 | 1.53e-39 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0801860 | AT4G34950.1 | 62.295 | 549 | 181 | 4 | 11 | 533 | 14 | 562 | 0.0 | 705 |
| Msa0801860 | AT2G16660.1 | 64.436 | 523 | 179 | 2 | 10 | 525 | 11 | 533 | 0.0 | 684 |
| Msa0801860 | AT2G16660.2 | 62.368 | 380 | 136 | 2 | 10 | 382 | 11 | 390 | 4.56e-163 | 469 |
| Msa0801860 | AT1G80530.1 | 35.145 | 552 | 326 | 9 | 1 | 525 | 1 | 547 | 7.55e-110 | 338 |
| Msa0801860 | AT5G14120.1 | 36.861 | 567 | 306 | 6 | 8 | 525 | 11 | 574 | 7.45e-109 | 337 |
| Msa0801860 | AT3G01930.2 | 35.813 | 578 | 304 | 7 | 7 | 525 | 10 | 579 | 7.15e-108 | 334 |
| Msa0801860 | AT5G50630.1 | 35.350 | 529 | 318 | 8 | 12 | 525 | 15 | 534 | 2.13e-105 | 327 |
| Msa0801860 | AT5G50520.1 | 35.350 | 529 | 318 | 8 | 12 | 525 | 15 | 534 | 2.13e-105 | 327 |
| Msa0801860 | AT2G28120.1 | 35.294 | 544 | 315 | 8 | 8 | 522 | 12 | 547 | 3.57e-102 | 319 |
| Msa0801860 | AT2G39210.1 | 35.055 | 542 | 314 | 10 | 13 | 522 | 21 | 556 | 4.93e-99 | 312 |
| Msa0801860 | AT1G74780.1 | 32.963 | 540 | 321 | 9 | 13 | 528 | 7 | 529 | 1.49e-90 | 288 |
| Msa0801860 | AT2G34350.1 | 32.721 | 544 | 324 | 7 | 8 | 530 | 2 | 524 | 1.21e-87 | 280 |
| Msa0801860 | AT2G34350.2 | 32.721 | 544 | 324 | 7 | 8 | 530 | 2 | 524 | 1.21e-87 | 280 |
| Msa0801860 | AT1G18940.1 | 31.667 | 540 | 311 | 9 | 13 | 524 | 9 | 518 | 5.12e-86 | 276 |
| Msa0801860 | AT2G34355.1 | 31.707 | 533 | 332 | 7 | 13 | 530 | 7 | 522 | 4.60e-82 | 265 |
| Msa0801860 | AT3G01930.1 | 35.021 | 474 | 241 | 7 | 111 | 525 | 1 | 466 | 6.36e-78 | 253 |
| Msa0801860 | AT3G01630.1 | 30.147 | 544 | 338 | 12 | 12 | 528 | 22 | 550 | 5.33e-74 | 245 |
| Msa0801860 | AT3G01630.2 | 30.147 | 544 | 338 | 12 | 12 | 528 | 40 | 568 | 9.86e-74 | 244 |
| Msa0801860 | AT1G31470.1 | 31.481 | 540 | 335 | 13 | 12 | 528 | 42 | 569 | 9.95e-70 | 234 |
| Msa0801860 | AT4G19450.1 | 31.272 | 566 | 335 | 16 | 11 | 528 | 5 | 564 | 2.84e-68 | 230 |
| Msa0801860 | AT3G01930.3 | 33.641 | 434 | 228 | 6 | 7 | 388 | 10 | 435 | 2.93e-68 | 226 |
| Msa0801860 | AT5G45275.1 | 30.864 | 567 | 334 | 15 | 11 | 528 | 5 | 562 | 2.07e-67 | 228 |
| Msa0801860 | AT2G30300.1 | 30.561 | 517 | 326 | 9 | 14 | 523 | 8 | 498 | 4.44e-65 | 220 |
| Msa0801860 | AT4G19450.2 | 31.566 | 415 | 235 | 13 | 11 | 382 | 5 | 413 | 1.01e-54 | 190 |
| Msa0801860 | AT2G34355.2 | 29.639 | 388 | 249 | 6 | 150 | 530 | 2 | 372 | 2.45e-48 | 172 |
Find 107 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGGACGCATTCTTTC+TGG | 0.067041 | 5_3:+16019796 | Msa0801860:CDS |
| TCATTTCATTCATAAGTATT+TGG | 0.123881 | 5_3:+16019770 | Msa0801860:CDS |
| ACTTCTTGTTCCTTTATATT+TGG | 0.160234 | 5_3:+16019459 | Msa0801860:CDS |
| CATGCTTGTGTATGTGATTA+TGG | 0.186967 | 5_3:+16020897 | Msa0801860:CDS |
| GAATAGCCCCTCTTCCTTAT+TGG | 0.195967 | 5_3:+16018251 | Msa0801860:CDS |
| CATTTCATTCATAAGTATTT+GGG | 0.219467 | 5_3:+16019771 | Msa0801860:CDS |
| CCCTTTAGAATGCCGGAAAT+TGG | 0.239061 | 5_3:-16019124 | None:intergenic |
| ATGGCTTTCGCTTGTGTATT+GGG | 0.254616 | 5_3:+16020916 | Msa0801860:CDS |
| ATAAGTATTTGGGGTTTCTT+TGG | 0.277285 | 5_3:+16019781 | Msa0801860:CDS |
| AAAGATGTTGGTAAAGCTTT+TGG | 0.279837 | 5_3:+16018118 | Msa0801860:CDS |
| TCTCAGATTCTGATGTTCTT+TGG | 0.295006 | 5_3:+16020604 | Msa0801860:CDS |
| CTCATTCTTAACCTTCCTAT+TGG | 0.296648 | 5_3:+16020775 | Msa0801860:CDS |
| CTATTTGGTCTCAAATACTA+TGG | 0.305461 | 5_3:+16020736 | Msa0801860:CDS |
| GTTATGTTTACCAGCCAATA+AGG | 0.305623 | 5_3:-16018265 | None:intergenic |
| CAGGCATGCCAAGGTTAGTT+TGG | 0.310026 | 5_3:+16020572 | Msa0801860:CDS |
| ATTAAACGAAAACCAGTTAT+AGG | 0.318415 | 5_3:+16019598 | Msa0801860:CDS |
| CTCTTGGCATTTGATATCTC+TGG | 0.323684 | 5_3:+16019373 | Msa0801860:CDS |
| GCAGCAGCTTCAGAACTATT+TGG | 0.325560 | 5_3:+16020721 | Msa0801860:CDS |
| ATCATGGGATTCATTGGTTA+TGG | 0.327847 | 5_3:+16018202 | Msa0801860:CDS |
| TTACCAGGATCACTATATAT+TGG | 0.329554 | 5_3:+16020649 | Msa0801860:CDS |
| GTATGCTCTTCTCCTATAAC+TGG | 0.339891 | 5_3:-16019610 | None:intergenic |
| TATGGCTTTCGCTTGTGTAT+TGG | 0.340093 | 5_3:+16020915 | Msa0801860:CDS |
| ATTTCTGTCTATATGTATCT+TGG | 0.344487 | 5_3:-16020986 | None:intergenic |
| AAGGAAGAGGGGCTATTCTT+TGG | 0.346608 | 5_3:-16018246 | None:intergenic |
| TTTCTCTGTGGTGTTGGAAC+AGG | 0.349477 | 5_3:+16019682 | Msa0801860:CDS |
| CAAGAAGTGGCATAGCTAAT+AGG | 0.363471 | 5_3:-16019444 | None:intergenic |
| ACTTCAGTTATTCTGATGAT+TGG | 0.363972 | 5_3:+16018175 | Msa0801860:CDS |
| TATATTGGTTCAATCTTAGT+AGG | 0.367284 | 5_3:+16020664 | Msa0801860:CDS |
| GATGTGTATATTCTTGTGTA+TGG | 0.373027 | 5_3:+16019027 | Msa0801860:intron |
| TCATAAACATGTTATTTCAT+TGG | 0.374079 | 5_3:+16019399 | Msa0801860:CDS |
| TTGAATACGACCAAATATAA+AGG | 0.374709 | 5_3:-16019469 | None:intergenic |
| TCCAATTTCCGGCATTCTAA+AGG | 0.384971 | 5_3:+16019123 | Msa0801860:CDS |
| TGAACCTTTGTTGGCACAAA+AGG | 0.386700 | 5_3:+16019528 | Msa0801860:CDS |
| GGTGCTATCATGGGATTCAT+TGG | 0.388521 | 5_3:+16018196 | Msa0801860:CDS |
| GACAGTAGCTATTTATCTCT+TGG | 0.396797 | 5_3:+16019357 | Msa0801860:CDS |
| TTGTTCTAAATGCAAGAAAC+AGG | 0.408668 | 5_3:-16020951 | None:intergenic |
| ATCTTAGTAGGAATATGTTA+TGG | 0.410113 | 5_3:+16020676 | Msa0801860:CDS |
| ACATATTGCTTGTACCCATA+TGG | 0.411307 | 5_3:-16018005 | None:intergenic |
| AGCATTAATAGAAACTTAGA+TGG | 0.417468 | 5_3:-16019208 | None:intergenic |
| CCAATTTCCGGCATTCTAAA+GGG | 0.419855 | 5_3:+16019124 | Msa0801860:CDS |
| TTCAATATCATAAAGGTATC+CGG | 0.421548 | 5_3:-16020824 | None:intergenic |
| GTGTCATTTCTCTGTGGTGT+TGG | 0.422085 | 5_3:+16019676 | Msa0801860:CDS |
| ACAGGTTCATGAACCTTTGT+TGG | 0.424667 | 5_3:+16019519 | Msa0801860:CDS |
| GATGAATAACTTGGGACAAA+TGG | 0.427374 | 5_3:+16019714 | Msa0801860:CDS |
| AGATGTGTTAAAGTCTCTAA+TGG | 0.430909 | 5_3:+16018057 | Msa0801860:CDS |
| TCTGATGATTGGTGCTATCA+TGG | 0.440148 | 5_3:+16018186 | Msa0801860:CDS |
| GTGCAAGTGTTTCCGCCTCC+TGG | 0.444901 | 5_3:-16020859 | None:intergenic |
| TAGGATTTGTGACAGCCATA+TGG | 0.447435 | 5_3:+16017990 | Msa0801860:CDS |
| CAGGTCTTGTTTCTGATCGT+TGG | 0.448059 | 5_3:+16018149 | Msa0801860:CDS |
| GAAAAGATGAATGAACCAAT+AGG | 0.463266 | 5_3:-16020790 | None:intergenic |
| ATGAATAACTTGGGACAAAT+GGG | 0.466370 | 5_3:+16019715 | Msa0801860:CDS |
| TTCGCTTGTGTATTGGGGTG+TGG | 0.467433 | 5_3:+16020922 | Msa0801860:CDS |
| AGAGCATACTATCATTGAAA+TGG | 0.467872 | 5_3:+16019624 | Msa0801860:CDS |
| AGCCCCTCTTCCTTATTGGC+TGG | 0.481952 | 5_3:+16018255 | Msa0801860:CDS |
| ACAAAAGGTTTCAGAAGTAA+AGG | 0.484351 | 5_3:+16019543 | Msa0801860:CDS |
| TAGTGGCTTCAATATCATAA+AGG | 0.484536 | 5_3:-16020831 | None:intergenic |
| TGGTTACATTGCATTGGCAA+TGG | 0.486214 | 5_3:+16020624 | Msa0801860:CDS |
| CACTCTCTGAATACTACATC+AGG | 0.489900 | 5_3:+16019821 | Msa0801860:CDS |
| GCATTGGCAATGGCCTTACC+AGG | 0.490266 | 5_3:+16020634 | Msa0801860:CDS |
| GAACCAATATATAGTGATCC+TGG | 0.491333 | 5_3:-16020652 | None:intergenic |
| AATGAAATAACATGTTTATG+AGG | 0.496120 | 5_3:-16019397 | None:intergenic |
| ATCATCAGAATAACTGAAGT+TGG | 0.498832 | 5_3:-16018172 | None:intergenic |
| GGAGGCGGAAACACTTGCAC+TGG | 0.501570 | 5_3:+16020862 | Msa0801860:CDS |
| AATCTCAACTTCCTCTACCT+TGG | 0.507298 | 5_3:-16019578 | None:intergenic |
| TACATAGCCCTTTAGAATGC+CGG | 0.507305 | 5_3:-16019131 | None:intergenic |
| TCTTCTGTAGAAGTTGAAGC+TGG | 0.513323 | 5_3:-16019289 | None:intergenic |
| AGGATTTGTGACAGCCATAT+GGG | 0.515315 | 5_3:+16017991 | Msa0801860:CDS |
| GGACAAATGGGACAGGCACT+TGG | 0.515436 | 5_3:+16019727 | Msa0801860:CDS |
| TTGTGTATTGGGGTGTGGAT+TGG | 0.519733 | 5_3:+16020927 | Msa0801860:CDS |
| CTCTCTGTTGCTAAAGATGT+TGG | 0.521493 | 5_3:+16018106 | Msa0801860:CDS |
| GTTCTTTGGTTACATTGCAT+TGG | 0.523788 | 5_3:+16020618 | Msa0801860:CDS |
| TCATTGGTTATGGAGCTCAA+TGG | 0.539555 | 5_3:+16018212 | Msa0801860:CDS |
| AGAGATCTGTACCAAGGTAG+AGG | 0.540372 | 5_3:+16019567 | Msa0801860:CDS |
| AATATATAGTGATCCTGGTA+AGG | 0.541574 | 5_3:-16020647 | None:intergenic |
| ATGTGTATATTCTTGTGTAT+GGG | 0.545839 | 5_3:+16019028 | Msa0801860:CDS |
| CTGATGATTGGTGCTATCAT+GGG | 0.547328 | 5_3:+16018187 | Msa0801860:CDS |
| AATAGTTCTGAAGCTGCTGC+TGG | 0.557803 | 5_3:-16020718 | None:intergenic |
| AAATGAACAAAGAAACATCA+TGG | 0.557965 | 5_3:-16019753 | None:intergenic |
| GCAATGAGACAAATGATAGC+AGG | 0.561934 | 5_3:-16019241 | None:intergenic |
| CAATAGGAAGGTTAAGAATG+AGG | 0.565069 | 5_3:-16020774 | None:intergenic |
| ATTGAAGCCACTAGTGTACC+AGG | 0.566378 | 5_3:+16020841 | Msa0801860:CDS |
| TCTGTAGAAGTTGAAGCTGG+TGG | 0.571451 | 5_3:-16019286 | None:intergenic |
| GCCACTAGTGTACCAGGAGG+CGG | 0.573885 | 5_3:+16020847 | Msa0801860:CDS |
| TTTACCAGCCAATAAGGAAG+AGG | 0.577066 | 5_3:-16018259 | None:intergenic |
| GGCATTCTAAAGGGCTATGT+AGG | 0.579833 | 5_3:+16019133 | Msa0801860:CDS |
| AAGCTGGTGGAGTTTCATGA+AGG | 0.580336 | 5_3:-16019273 | None:intergenic |
| TCCGCCTCCTGGTACACTAG+TGG | 0.580549 | 5_3:-16020848 | None:intergenic |
| ATTTCATTCATAAGTATTTG+GGG | 0.583874 | 5_3:+16019772 | Msa0801860:CDS |
| AAATATAAAGGAACAAGAAG+TGG | 0.584319 | 5_3:-16019457 | None:intergenic |
| ATATGGGTACAAGCAATATG+TGG | 0.584975 | 5_3:+16018007 | Msa0801860:CDS |
| GCTGCGTTCCAAACTAACCT+TGG | 0.585421 | 5_3:-16020580 | None:intergenic |
| TGGCTTTCGCTTGTGTATTG+GGG | 0.591806 | 5_3:+16020917 | Msa0801860:CDS |
| TGTATATTCTTGTGTATGGG+TGG | 0.598397 | 5_3:+16019031 | Msa0801860:CDS |
| TAACTTGGGACAAATGGGAC+AGG | 0.599118 | 5_3:+16019720 | Msa0801860:CDS |
| TTACCAGCCAATAAGGAAGA+GGG | 0.606426 | 5_3:-16018258 | None:intergenic |
| TAGAAACTTAGATGGGTCTG+AGG | 0.614102 | 5_3:-16019200 | None:intergenic |
| GCAGAAAATCAGGCATGCCA+AGG | 0.615589 | 5_3:+16020563 | Msa0801860:intron |
| AGATGAATGAACCAATAGGA+AGG | 0.629288 | 5_3:-16020786 | None:intergenic |
| TTGTTTGTGTCATTTCTCTG+TGG | 0.636758 | 5_3:+16019670 | Msa0801860:CDS |
| AAAGGAAGAGATCTGTACCA+AGG | 0.647216 | 5_3:+16019561 | Msa0801860:CDS |
| GCATTAATAGAAACTTAGAT+GGG | 0.651110 | 5_3:-16019207 | None:intergenic |
| ACTATGTGTGATGAATAACT+TGG | 0.651334 | 5_3:+16019705 | Msa0801860:CDS |
| TACCAGCCAATAAGGAAGAG+GGG | 0.660022 | 5_3:-16018257 | None:intergenic |
| CTATGTGTGATGAATAACTT+GGG | 0.685471 | 5_3:+16019706 | Msa0801860:CDS |
| TGGGTGGAAACAGCACAACA+TGG | 0.685598 | 5_3:+16019047 | Msa0801860:CDS |
| GAATGCCGGAAATTGGACCG+CGG | 0.763852 | 5_3:-16019117 | None:intergenic |
| GAAGCCACTAGTGTACCAGG+AGG | 0.777264 | 5_3:+16020844 | Msa0801860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATATAAACATAGTTTTA+AGG | + | chr5_3:16019901-16019920 | Msa0801860:intron | 10.0% |
| !!! | TAAATTGTTTTTTTGAAAAC+TGG | + | chr5_3:16018409-16018428 | Msa0801860:intron | 15.0% |
| !! | TATAGAAATATCTATATACT+AGG | + | chr5_3:16018929-16018948 | Msa0801860:intron | 15.0% |
| !!! | ATAATCAAGATTTTAAAATG+TGG | - | chr5_3:16020456-16020475 | None:intergenic | 15.0% |
| !! | TTGATTATAAGTTTATAACT+AGG | + | chr5_3:16020468-16020487 | Msa0801860:intron | 15.0% |
| !! | CATATAAAATTAAACATTCA+AGG | - | chr5_3:16020543-16020562 | None:intergenic | 15.0% |
| !!! | CTTGAATGTTTAATTTTATA+TGG | + | chr5_3:16020541-16020560 | Msa0801860:intron | 15.0% |
| !! | TAGTTTCTTTACTTTATCTT+TGG | - | chr5_3:16018553-16018572 | None:intergenic | 20.0% |
| !! | ACCAATTTATTTGATTACTT+CGG | + | chr5_3:16018992-16019011 | Msa0801860:intron | 20.0% |
| !! | AATGAAATAACATGTTTATG+AGG | - | chr5_3:16019400-16019419 | None:intergenic | 20.0% |
| !!! | TCATAAACATGTTATTTCAT+TGG | + | chr5_3:16019399-16019418 | Msa0801860:CDS | 20.0% |
| !! | TCATTTCATTCATAAGTATT+TGG | + | chr5_3:16019770-16019789 | Msa0801860:CDS | 20.0% |
| !! | CATTTCATTCATAAGTATTT+GGG | + | chr5_3:16019771-16019790 | Msa0801860:CDS | 20.0% |
| !! | ATTTCATTCATAAGTATTTG+GGG | + | chr5_3:16019772-16019791 | Msa0801860:CDS | 20.0% |
| !! | AATCAAATAGTCATGTATAT+GGG | - | chr5_3:16019879-16019898 | None:intergenic | 20.0% |
| !! | AAATCAAATAGTCATGTATA+TGG | - | chr5_3:16019880-16019899 | None:intergenic | 20.0% |
| !!! | TAAACATAGTTTTAAGGAAA+AGG | + | chr5_3:16019907-16019926 | Msa0801860:intron | 20.0% |
| !! | ATTGATTATTTGCAATGTAA+AGG | + | chr5_3:16020008-16020027 | Msa0801860:intron | 20.0% |
| !! | GCTGTTATTAACATATAATT+AGG | + | chr5_3:16020236-16020255 | Msa0801860:intron | 20.0% |
| !!! | TTTTTCTTCTTCTTTCTATT+TGG | + | chr5_3:16020391-16020410 | Msa0801860:intron | 20.0% |
| !!! | ATTTGGTTAAGTTCTATTTT+TGG | + | chr5_3:16020408-16020427 | Msa0801860:intron | 20.0% |
| !! | TTATAAGTTTATAACTAGGA+AGG | + | chr5_3:16020472-16020491 | Msa0801860:intron | 20.0% |
| !! | TATAAGTTTATAACTAGGAA+GGG | + | chr5_3:16020473-16020492 | Msa0801860:intron | 20.0% |
| !! | ATAATTTTGCAGCTGAAAAA+TGG | + | chr5_3:16017966-16017985 | Msa0801860:CDS | 25.0% |
| !! | AAAGCTTTTGGTATTTTATC+AGG | + | chr5_3:16018130-16018149 | Msa0801860:CDS | 25.0% |
| ! | AATGAACTGAAAACAGATTA+TGG | - | chr5_3:16018786-16018805 | None:intergenic | 25.0% |
| ! | AAATATCTATATACTAGGAC+TGG | + | chr5_3:16018934-16018953 | Msa0801860:intron | 25.0% |
| ! | TCCGAAGTAATCAAATAAAT+TGG | - | chr5_3:16018996-16019015 | None:intergenic | 25.0% |
| ! | ATGTGTATATTCTTGTGTAT+GGG | + | chr5_3:16019028-16019047 | Msa0801860:CDS | 25.0% |
| ! | GCATTAATAGAAACTTAGAT+GGG | - | chr5_3:16019210-16019229 | None:intergenic | 25.0% |
| ! | AGCATTAATAGAAACTTAGA+TGG | - | chr5_3:16019211-16019230 | None:intergenic | 25.0% |
| ! | AAATATAAAGGAACAAGAAG+TGG | - | chr5_3:16019460-16019479 | None:intergenic | 25.0% |
| ! | ACTTCTTGTTCCTTTATATT+TGG | + | chr5_3:16019459-16019478 | Msa0801860:CDS | 25.0% |
| ! | TTGAATACGACCAAATATAA+AGG | - | chr5_3:16019472-16019491 | None:intergenic | 25.0% |
| ! | ATTAAACGAAAACCAGTTAT+AGG | + | chr5_3:16019598-16019617 | Msa0801860:CDS | 25.0% |
| ! | AAATGAACAAAGAAACATCA+TGG | - | chr5_3:16019756-16019775 | None:intergenic | 25.0% |
| ! | AAATCTTAACTCATAGATCA+GGG | - | chr5_3:16019941-16019960 | None:intergenic | 25.0% |
| ! | AAAATCTTAACTCATAGATC+AGG | - | chr5_3:16019942-16019961 | None:intergenic | 25.0% |
| ! | TAACATATAATTAGGTCAGT+TGG | + | chr5_3:16020244-16020263 | Msa0801860:intron | 25.0% |
| !!! | TTGGTTTTTTTAATAGTCCT+AGG | + | chr5_3:16020427-16020446 | Msa0801860:intron | 25.0% |
| !! | ATTTTATATGGCAGAAAATC+AGG | + | chr5_3:16020553-16020572 | Msa0801860:intron | 25.0% |
| !!! | TATATTGGTTCAATCTTAGT+AGG | + | chr5_3:16020664-16020683 | Msa0801860:CDS | 25.0% |
| ! | ATCTTAGTAGGAATATGTTA+TGG | + | chr5_3:16020676-16020695 | Msa0801860:CDS | 25.0% |
| !!! | TTCAATATCATAAAGGTATC+CGG | - | chr5_3:16020827-16020846 | None:intergenic | 25.0% |
| ! | ATTTCTGTCTATATGTATCT+TGG | - | chr5_3:16020989-16021008 | None:intergenic | 25.0% |
| AGATGTGTTAAAGTCTCTAA+TGG | + | chr5_3:16018057-16018076 | Msa0801860:CDS | 30.0% | |
| !! | AAAGATGTTGGTAAAGCTTT+TGG | + | chr5_3:16018118-16018137 | Msa0801860:CDS | 30.0% |
| ATCATCAGAATAACTGAAGT+TGG | - | chr5_3:16018175-16018194 | None:intergenic | 30.0% | |
| ACTTCAGTTATTCTGATGAT+TGG | + | chr5_3:16018175-16018194 | Msa0801860:CDS | 30.0% | |
| ! | TACACAACATGATTTGTGAA+TGG | - | chr5_3:16018385-16018404 | None:intergenic | 30.0% |
| !! | AACTACACATAGTTGACTTT+TGG | - | chr5_3:16018619-16018638 | None:intergenic | 30.0% |
| !!! | AGTTCTTTTTTGTAACTCTC+CGG | + | chr5_3:16018635-16018654 | Msa0801860:intron | 30.0% |
| AACAGACCTACAAATTATCA+GGG | - | chr5_3:16018678-16018697 | None:intergenic | 30.0% | |
| AAACAGACCTACAAATTATC+AGG | - | chr5_3:16018679-16018698 | None:intergenic | 30.0% | |
| ! | TGATAATTTGTAGGTCTGTT+TGG | + | chr5_3:16018678-16018697 | Msa0801860:intron | 30.0% |
| !! | GTTGTTTTCTTAAGCTATCT+TGG | - | chr5_3:16018821-16018840 | None:intergenic | 30.0% |
| GTTGGATGAATACAACATTT+CGG | + | chr5_3:16018959-16018978 | Msa0801860:intron | 30.0% | |
| TTGGATGAATACAACATTTC+GGG | + | chr5_3:16018960-16018979 | Msa0801860:intron | 30.0% | |
| GATGTGTATATTCTTGTGTA+TGG | + | chr5_3:16019027-16019046 | Msa0801860:intron | 30.0% | |
| !!! | ATTTCATTGGTTTTCACAGT+AGG | + | chr5_3:16019412-16019431 | Msa0801860:CDS | 30.0% |
| ! | TGTTTTTCTTTGTCAACACT+AGG | - | chr5_3:16019502-16019521 | None:intergenic | 30.0% |
| !! | TAGTGTTGACAAAGAAAAAC+AGG | + | chr5_3:16019501-16019520 | Msa0801860:CDS | 30.0% |
| ACAAAAGGTTTCAGAAGTAA+AGG | + | chr5_3:16019543-16019562 | Msa0801860:CDS | 30.0% | |
| AGAGCATACTATCATTGAAA+TGG | + | chr5_3:16019624-16019643 | Msa0801860:CDS | 30.0% | |
| !!! | TGGTGAAAACTGTTGATTTT+TGG | + | chr5_3:16019644-16019663 | Msa0801860:CDS | 30.0% |
| !!! | GGTGAAAACTGTTGATTTTT+GGG | + | chr5_3:16019645-16019664 | Msa0801860:CDS | 30.0% |
| ACTATGTGTGATGAATAACT+TGG | + | chr5_3:16019705-16019724 | Msa0801860:CDS | 30.0% | |
| CTATGTGTGATGAATAACTT+GGG | + | chr5_3:16019706-16019725 | Msa0801860:CDS | 30.0% | |
| ATGAATAACTTGGGACAAAT+GGG | + | chr5_3:16019715-16019734 | Msa0801860:CDS | 30.0% | |
| ! | ATAAGTATTTGGGGTTTCTT+TGG | + | chr5_3:16019781-16019800 | Msa0801860:CDS | 30.0% |
| TTAGTTCGATTCAGAACTAT+AGG | - | chr5_3:16020152-16020171 | None:intergenic | 30.0% | |
| AAAGAACCAAAAAACCAAAC+CGG | + | chr5_3:16020295-16020314 | Msa0801860:intron | 30.0% | |
| AATATATAGTGATCCTGGTA+AGG | - | chr5_3:16020650-16020669 | None:intergenic | 30.0% | |
| TTACCAGGATCACTATATAT+TGG | + | chr5_3:16020649-16020668 | Msa0801860:CDS | 30.0% | |
| CTATTTGGTCTCAAATACTA+TGG | + | chr5_3:16020736-16020755 | Msa0801860:CDS | 30.0% | |
| GAAAAGATGAATGAACCAAT+AGG | - | chr5_3:16020793-16020812 | None:intergenic | 30.0% | |
| !! | ATTGGTTCATTCATCTTTTC+TGG | + | chr5_3:16020793-16020812 | Msa0801860:CDS | 30.0% |
| TAGTGGCTTCAATATCATAA+AGG | - | chr5_3:16020834-16020853 | None:intergenic | 30.0% | |
| ! | TTGTTCTAAATGCAAGAAAC+AGG | - | chr5_3:16020954-16020973 | None:intergenic | 30.0% |
| ACATATTGCTTGTACCCATA+TGG | - | chr5_3:16018008-16018027 | None:intergenic | 35.0% | |
| ATATGGGTACAAGCAATATG+TGG | + | chr5_3:16018007-16018026 | Msa0801860:CDS | 35.0% | |
| ! | ATCATGGGATTCATTGGTTA+TGG | + | chr5_3:16018202-16018221 | Msa0801860:CDS | 35.0% |
| GTTATGTTTACCAGCCAATA+AGG | - | chr5_3:16018268-16018287 | None:intergenic | 35.0% | |
| ! | CAACATGATTTGTGAATGGA+AGG | - | chr5_3:16018381-16018400 | None:intergenic | 35.0% |
| CAAAAATCGACTAACCTGAA+GGG | + | chr5_3:16018441-16018460 | Msa0801860:intron | 35.0% | |
| TGTACACAGAACTTTGTTCT+GGG | - | chr5_3:16018511-16018530 | None:intergenic | 35.0% | |
| ! | AACGAACCCTGATAATTTGT+AGG | + | chr5_3:16018669-16018688 | Msa0801860:intron | 35.0% |
| TAAGAGCTTGTGAAACTGAT+TGG | + | chr5_3:16018730-16018749 | Msa0801860:intron | 35.0% | |
| AAGAGCTTGTGAAACTGATT+GGG | + | chr5_3:16018731-16018750 | Msa0801860:intron | 35.0% | |
| AAGCTATCTTGGAGAACTTA+TGG | - | chr5_3:16018810-16018829 | None:intergenic | 35.0% | |
| TATATACTAGGACTGGATGT+TGG | + | chr5_3:16018941-16018960 | Msa0801860:intron | 35.0% | |
| ATGAATACAACATTTCGGGA+AGG | + | chr5_3:16018964-16018983 | Msa0801860:intron | 35.0% | |
| TGTATATTCTTGTGTATGGG+TGG | + | chr5_3:16019031-16019050 | Msa0801860:CDS | 35.0% | |
| AGAAACTTTCCAAAAAACCG+CGG | + | chr5_3:16019100-16019119 | Msa0801860:CDS | 35.0% | |
| GACAGTAGCTATTTATCTCT+TGG | + | chr5_3:16019357-16019376 | Msa0801860:CDS | 35.0% | |
| !! | TTGTTTGTGTCATTTCTCTG+TGG | + | chr5_3:16019670-16019689 | Msa0801860:CDS | 35.0% |
| GATGAATAACTTGGGACAAA+TGG | + | chr5_3:16019714-16019733 | Msa0801860:CDS | 35.0% | |
| TGAACAAACAGCAATGACTA+GGG | - | chr5_3:16019853-16019872 | None:intergenic | 35.0% | |
| TTGAACAAACAGCAATGACT+AGG | - | chr5_3:16019854-16019873 | None:intergenic | 35.0% | |
| TGTCAATGCAATGACAGTTT+AGG | + | chr5_3:16019965-16019984 | Msa0801860:intron | 35.0% | |
| ! | CTGAACCTAACTTGTGTTAA+AGG | + | chr5_3:16020112-16020131 | Msa0801860:intron | 35.0% |
| CAGAACCTTTAACACAAGTT+AGG | - | chr5_3:16020120-16020139 | None:intergenic | 35.0% | |
| GAGTTCATGACAGTTCAATT+CGG | - | chr5_3:16020361-16020380 | None:intergenic | 35.0% | |
| ATTGAACTGTCATGAACTCT+CGG | + | chr5_3:16020362-16020381 | Msa0801860:intron | 35.0% | |
| !!! | ATTTTAAAATGTGGTCGCCT+AGG | - | chr5_3:16020447-16020466 | None:intergenic | 35.0% |
| TCTCAGATTCTGATGTTCTT+TGG | + | chr5_3:16020604-16020623 | Msa0801860:CDS | 35.0% | |
| GTTCTTTGGTTACATTGCAT+TGG | + | chr5_3:16020618-16020637 | Msa0801860:CDS | 35.0% | |
| GAACCAATATATAGTGATCC+TGG | - | chr5_3:16020655-16020674 | None:intergenic | 35.0% | |
| CAATAGGAAGGTTAAGAATG+AGG | - | chr5_3:16020777-16020796 | None:intergenic | 35.0% | |
| CTCATTCTTAACCTTCCTAT+TGG | + | chr5_3:16020775-16020794 | Msa0801860:CDS | 35.0% | |
| AGATGAATGAACCAATAGGA+AGG | - | chr5_3:16020789-16020808 | None:intergenic | 35.0% | |
| CATGCTTGTGTATGTGATTA+TGG | + | chr5_3:16020897-16020916 | Msa0801860:CDS | 35.0% | |
| TTTGCAGCTGAAAAATGGCT+AGG | + | chr5_3:16017971-16017990 | Msa0801860:CDS | 40.0% | |
| TAGGATTTGTGACAGCCATA+TGG | + | chr5_3:16017990-16018009 | Msa0801860:CDS | 40.0% | |
| AGGATTTGTGACAGCCATAT+GGG | + | chr5_3:16017991-16018010 | Msa0801860:CDS | 40.0% | |
| CTCTCTGTTGCTAAAGATGT+TGG | + | chr5_3:16018106-16018125 | Msa0801860:CDS | 40.0% | |
| !! | TCTGATGATTGGTGCTATCA+TGG | + | chr5_3:16018186-16018205 | Msa0801860:CDS | 40.0% |
| !! | CTGATGATTGGTGCTATCAT+GGG | + | chr5_3:16018187-16018206 | Msa0801860:CDS | 40.0% |
| ! | TCATTGGTTATGGAGCTCAA+TGG | + | chr5_3:16018212-16018231 | Msa0801860:CDS | 40.0% |
| TTACCAGCCAATAAGGAAGA+GGG | - | chr5_3:16018261-16018280 | None:intergenic | 40.0% | |
| TTTACCAGCCAATAAGGAAG+AGG | - | chr5_3:16018262-16018281 | None:intergenic | 40.0% | |
| !! | CCTTCAGGTTAGTCGATTTT+TGG | - | chr5_3:16018443-16018462 | None:intergenic | 40.0% |
| CCAAAAATCGACTAACCTGA+AGG | + | chr5_3:16018440-16018459 | Msa0801860:intron | 40.0% | |
| GTGTACACAGAACTTTGTTC+TGG | - | chr5_3:16018512-16018531 | None:intergenic | 40.0% | |
| ! | TATCAGGGTTCGTTTTCCTT+AGG | - | chr5_3:16018663-16018682 | None:intergenic | 40.0% |
| AAACTGATTGGGAGAGCTTA+GGG | + | chr5_3:16018742-16018761 | Msa0801860:intron | 40.0% | |
| TCCAATTTCCGGCATTCTAA+AGG | + | chr5_3:16019123-16019142 | Msa0801860:CDS | 40.0% | |
| CCAATTTCCGGCATTCTAAA+GGG | + | chr5_3:16019124-16019143 | Msa0801860:CDS | 40.0% | |
| !! | TACATAGCCCTTTAGAATGC+CGG | - | chr5_3:16019134-16019153 | None:intergenic | 40.0% |
| TAGAAACTTAGATGGGTCTG+AGG | - | chr5_3:16019203-16019222 | None:intergenic | 40.0% | |
| GCAATGAGACAAATGATAGC+AGG | - | chr5_3:16019244-16019263 | None:intergenic | 40.0% | |
| TCTTCTGTAGAAGTTGAAGC+TGG | - | chr5_3:16019292-16019311 | None:intergenic | 40.0% | |
| CTCTTGGCATTTGATATCTC+TGG | + | chr5_3:16019373-16019392 | Msa0801860:CDS | 40.0% | |
| CAAGAAGTGGCATAGCTAAT+AGG | - | chr5_3:16019447-16019466 | None:intergenic | 40.0% | |
| ACAGGTTCATGAACCTTTGT+TGG | + | chr5_3:16019519-16019538 | Msa0801860:CDS | 40.0% | |
| TGAACCTTTGTTGGCACAAA+AGG | + | chr5_3:16019528-16019547 | Msa0801860:CDS | 40.0% | |
| ! | GAAACCTTTTGTGCCAACAA+AGG | - | chr5_3:16019535-16019554 | None:intergenic | 40.0% |
| AAAGGAAGAGATCTGTACCA+AGG | + | chr5_3:16019561-16019580 | Msa0801860:CDS | 40.0% | |
| AATCTCAACTTCCTCTACCT+TGG | - | chr5_3:16019581-16019600 | None:intergenic | 40.0% | |
| GTATGCTCTTCTCCTATAAC+TGG | - | chr5_3:16019613-16019632 | None:intergenic | 40.0% | |
| TTCTTTGGACGCATTCTTTC+TGG | + | chr5_3:16019796-16019815 | Msa0801860:CDS | 40.0% | |
| CACTCTCTGAATACTACATC+AGG | + | chr5_3:16019821-16019840 | Msa0801860:CDS | 40.0% | |
| CACTAGGACTGTTTATGGTT+CGG | + | chr5_3:16020039-16020058 | Msa0801860:intron | 40.0% | |
| !! | GTTTATGGTTCGGTTCAAGA+AGG | + | chr5_3:16020049-16020068 | Msa0801860:intron | 40.0% |
| !!! | GTTCTTCCGGTTTGGTTTTT+TGG | - | chr5_3:16020304-16020323 | None:intergenic | 40.0% |
| ! | TGGTTACATTGCATTGGCAA+TGG | + | chr5_3:16020624-16020643 | Msa0801860:CDS | 40.0% |
| !! | ATCTTTTCTGGTCTCATTGC+CGG | + | chr5_3:16020805-16020824 | Msa0801860:CDS | 40.0% |
| TATGGCTTTCGCTTGTGTAT+TGG | + | chr5_3:16020915-16020934 | Msa0801860:CDS | 40.0% | |
| ATGGCTTTCGCTTGTGTATT+GGG | + | chr5_3:16020916-16020935 | Msa0801860:CDS | 40.0% | |
| !! | CAGGTCTTGTTTCTGATCGT+TGG | + | chr5_3:16018149-16018168 | Msa0801860:CDS | 45.0% |
| ! | GGTGCTATCATGGGATTCAT+TGG | + | chr5_3:16018196-16018215 | Msa0801860:CDS | 45.0% |
| AAGGAAGAGGGGCTATTCTT+TGG | - | chr5_3:16018249-16018268 | None:intergenic | 45.0% | |
| GAATAGCCCCTCTTCCTTAT+TGG | + | chr5_3:16018251-16018270 | Msa0801860:CDS | 45.0% | |
| TACCAGCCAATAAGGAAGAG+GGG | - | chr5_3:16018260-16018279 | None:intergenic | 45.0% | |
| !! | GTTCTGGGTCTGGCTTTAAA+TGG | - | chr5_3:16018496-16018515 | None:intergenic | 45.0% |
| ! | ACAGAACTTTGTTCTGGGTC+TGG | - | chr5_3:16018506-16018525 | None:intergenic | 45.0% |
| TTGTAACTCTCCGGTTCCTA+AGG | + | chr5_3:16018644-16018663 | Msa0801860:intron | 45.0% | |
| ! | GGTTCGTTTTCCTTAGGAAC+CGG | - | chr5_3:16018657-16018676 | None:intergenic | 45.0% |
| GAAACTGATTGGGAGAGCTT+AGG | + | chr5_3:16018741-16018760 | Msa0801860:intron | 45.0% | |
| !!! | GAAATTGGACCGCGGTTTTT+TGG | - | chr5_3:16019112-16019131 | None:intergenic | 45.0% |
| AAAAACCGCGGTCCAATTTC+CGG | + | chr5_3:16019112-16019131 | Msa0801860:CDS | 45.0% | |
| !! | CCCTTTAGAATGCCGGAAAT+TGG | - | chr5_3:16019127-16019146 | None:intergenic | 45.0% |
| ! | GGCATTCTAAAGGGCTATGT+AGG | + | chr5_3:16019133-16019152 | Msa0801860:CDS | 45.0% |
| AAGCTGGTGGAGTTTCATGA+AGG | - | chr5_3:16019276-16019295 | None:intergenic | 45.0% | |
| TCTGTAGAAGTTGAAGCTGG+TGG | - | chr5_3:16019289-16019308 | None:intergenic | 45.0% | |
| AGAGATCTGTACCAAGGTAG+AGG | + | chr5_3:16019567-16019586 | Msa0801860:CDS | 45.0% | |
| !! | GTGTCATTTCTCTGTGGTGT+TGG | + | chr5_3:16019676-16019695 | Msa0801860:CDS | 45.0% |
| ! | TTTCTCTGTGGTGTTGGAAC+AGG | + | chr5_3:16019682-16019701 | Msa0801860:CDS | 45.0% |
| TAACTTGGGACAAATGGGAC+AGG | + | chr5_3:16019720-16019739 | Msa0801860:CDS | 45.0% | |
| CGAACCATAAACAGTCCTAG+TGG | - | chr5_3:16020041-16020060 | None:intergenic | 45.0% | |
| !! | ACAGTTTGGTTCTTCCGGTT+TGG | - | chr5_3:16020312-16020331 | None:intergenic | 45.0% |
| GTGAACTATCCGTCACAGTT+TGG | - | chr5_3:16020326-16020345 | None:intergenic | 45.0% | |
| !! | AATAGTTCTGAAGCTGCTGC+TGG | - | chr5_3:16020721-16020740 | None:intergenic | 45.0% |
| GCAGCAGCTTCAGAACTATT+TGG | + | chr5_3:16020721-16020740 | Msa0801860:CDS | 45.0% | |
| ATTGAAGCCACTAGTGTACC+AGG | + | chr5_3:16020841-16020860 | Msa0801860:CDS | 45.0% | |
| TGGCTTTCGCTTGTGTATTG+GGG | + | chr5_3:16020917-16020936 | Msa0801860:CDS | 45.0% | |
| TTGTGTATTGGGGTGTGGAT+TGG | + | chr5_3:16020927-16020946 | Msa0801860:CDS | 45.0% | |
| CAATCACACCGCTCACTTGT+GGG | + | chr5_3:16018466-16018485 | Msa0801860:intron | 50.0% | |
| AATCACACCGCTCACTTGTG+GGG | + | chr5_3:16018467-16018486 | Msa0801860:intron | 50.0% | |
| TGGGTGGAAACAGCACAACA+TGG | + | chr5_3:16019047-16019066 | Msa0801860:CDS | 50.0% | |
| TGTAAAGGATCGCGACCACT+AGG | + | chr5_3:16020023-16020042 | Msa0801860:intron | 50.0% | |
| GCGACCACTAGGACTGTTTA+TGG | + | chr5_3:16020034-16020053 | Msa0801860:intron | 50.0% | |
| !! | CCGTCACAGTTTGGTTCTTC+CGG | - | chr5_3:16020317-16020336 | None:intergenic | 50.0% |
| CCGGAAGAACCAAACTGTGA+CGG | + | chr5_3:16020314-16020333 | Msa0801860:intron | 50.0% | |
| GCAGAAAATCAGGCATGCCA+AGG | + | chr5_3:16020563-16020582 | Msa0801860:intron | 50.0% | |
| ! | CAGGCATGCCAAGGTTAGTT+TGG | + | chr5_3:16020572-16020591 | Msa0801860:CDS | 50.0% |
| GCTGCGTTCCAAACTAACCT+TGG | - | chr5_3:16020583-16020602 | None:intergenic | 50.0% | |
| TTCGCTTGTGTATTGGGGTG+TGG | + | chr5_3:16020922-16020941 | Msa0801860:CDS | 50.0% | |
| AGCCCCTCTTCCTTATTGGC+TGG | + | chr5_3:16018255-16018274 | Msa0801860:CDS | 55.0% | |
| CCACAAGTGAGCGGTGTGAT+TGG | - | chr5_3:16018468-16018487 | None:intergenic | 55.0% | |
| CCAATCACACCGCTCACTTG+TGG | + | chr5_3:16018465-16018484 | Msa0801860:intron | 55.0% | |
| ATCACACCGCTCACTTGTGG+GGG | + | chr5_3:16018468-16018487 | Msa0801860:intron | 55.0% | |
| GAATGCCGGAAATTGGACCG+CGG | - | chr5_3:16019120-16019139 | None:intergenic | 55.0% | |
| GGACAAATGGGACAGGCACT+TGG | + | chr5_3:16019727-16019746 | Msa0801860:CDS | 55.0% | |
| ! | GCATTGGCAATGGCCTTACC+AGG | + | chr5_3:16020634-16020653 | Msa0801860:CDS | 55.0% |
| GAAGCCACTAGTGTACCAGG+AGG | + | chr5_3:16020844-16020863 | Msa0801860:CDS | 55.0% | |
| ! | GCGGTGTGATTGGTCCCTTC+AGG | - | chr5_3:16018458-16018477 | None:intergenic | 60.0% |
| ATGGAGCCCCCACAAGTGAG+CGG | - | chr5_3:16018477-16018496 | None:intergenic | 60.0% | |
| GCCACTAGTGTACCAGGAGG+CGG | + | chr5_3:16020847-16020866 | Msa0801860:CDS | 60.0% | |
| TCCGCCTCCTGGTACACTAG+TGG | - | chr5_3:16020851-16020870 | None:intergenic | 60.0% | |
| GTGCAAGTGTTTCCGCCTCC+TGG | - | chr5_3:16020862-16020881 | None:intergenic | 60.0% | |
| GGAGGCGGAAACACTTGCAC+TGG | + | chr5_3:16020862-16020881 | Msa0801860:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 16017947 | 16021035 | 16017947 | ID=Msa0801860;Name=Msa0801860 |
| chr5_3 | mRNA | 16017947 | 16021035 | 16017947 | ID=Msa0801860-mRNA-1;Parent=Msa0801860;Name=Msa0801860-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|537 |
| chr5_3 | exon | 16017947 | 16018276 | 16017947 | ID=Msa0801860-mRNA-1:exon:6694;Parent=Msa0801860-mRNA-1 |
| chr5_3 | exon | 16019028 | 16019842 | 16019028 | ID=Msa0801860-mRNA-1:exon:6695;Parent=Msa0801860-mRNA-1 |
| chr5_3 | exon | 16020567 | 16021035 | 16020567 | ID=Msa0801860-mRNA-1:exon:6696;Parent=Msa0801860-mRNA-1 |
| chr5_3 | CDS | 16017947 | 16018276 | 16017947 | ID=Msa0801860-mRNA-1:cds;Parent=Msa0801860-mRNA-1 |
| chr5_3 | CDS | 16019028 | 16019842 | 16019028 | ID=Msa0801860-mRNA-1:cds;Parent=Msa0801860-mRNA-1 |
| chr5_3 | CDS | 16020567 | 16021035 | 16020567 | ID=Msa0801860-mRNA-1:cds;Parent=Msa0801860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
