Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610520 | AFK40215.1 | 100.000 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 2.49e-111 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610520 | sp|Q9MAS5|VA726_ARATH | 80.667 | 150 | 29 | 0 | 5 | 154 | 3 | 152 | 2.32e-91 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610520 | I3SIX3 | 100.000 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 1.19e-111 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095360 | Msa0610520 | 0.804744 | 1.864981e-49 | -8.615850e-47 |
| Msa0604290 | Msa0610520 | 0.812940 | 3.291369e-51 | -8.615850e-47 |
| Msa0610520 | Msa0610550 | 0.828041 | 1.120450e-54 | -8.615850e-47 |
| Msa0610520 | Msa0629240 | 0.812627 | 3.853821e-51 | -8.615850e-47 |
| Msa0610520 | Msa0672550 | 0.801608 | 8.310431e-49 | -8.615850e-47 |
| Msa0610520 | Msa0709120 | 0.805977 | 1.028699e-49 | -8.615850e-47 |
| Msa0610520 | Msa0746170 | 0.818822 | 1.603795e-52 | -8.615850e-47 |
| Msa0610520 | Msa0746210 | 0.827332 | 1.658507e-54 | -8.615850e-47 |
| Msa0610520 | Msa0816130 | 0.805069 | 1.594998e-49 | -8.615850e-47 |
| Msa0610520 | Msa1037520 | 0.806749 | 7.072184e-50 | -8.615850e-47 |
| Msa0610520 | Msa1128270 | 0.815646 | 8.310748e-52 | -8.615850e-47 |
| Msa0610520 | Msa1184690 | 0.812862 | 3.424637e-51 | -8.615850e-47 |
| Msa0610520 | Msa1234620 | 0.802256 | 6.114495e-49 | -8.615850e-47 |
| Msa0610520 | Msa1238600 | 0.805352 | 1.391324e-49 | -8.615850e-47 |
| Msa0610520 | Msa1271130 | 0.804581 | 2.016432e-49 | -8.615850e-47 |
| Msa0139670 | Msa0610520 | 0.807264 | 5.502580e-50 | -8.615850e-47 |
| Msa0202410 | Msa0610520 | 0.816825 | 4.529899e-52 | -8.615850e-47 |
| Msa0382370 | Msa0610520 | 0.801167 | 1.023079e-48 | -8.615850e-47 |
| Msa0385500 | Msa0610520 | 0.810115 | 1.352911e-50 | -8.615850e-47 |
| Msa0476680 | Msa0610520 | 0.800945 | 1.135596e-48 | -8.615850e-47 |
| Msa0241830 | Msa0610520 | 0.804881 | 1.745812e-49 | -8.615850e-47 |
| Msa0257490 | Msa0610520 | 0.809347 | 1.978996e-50 | -8.615850e-47 |
| Msa0296790 | Msa0610520 | 0.836383 | 9.665833e-57 | -8.615850e-47 |
| Msa0321690 | Msa0610520 | 0.822146 | 2.769185e-53 | -8.615850e-47 |
| Msa0491000 | Msa0610520 | 0.807143 | 5.836833e-50 | -8.615850e-47 |
| Msa0542560 | Msa0610520 | 0.803623 | 3.191352e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610520 | MtrunA17_Chr4g0043521 | 100.000 | 154 | 0 | 0 | 1 | 154 | 1 | 154 | 2.72e-115 | 325 |
| Msa0610520 | MtrunA17_Chr2g0291651 | 90.132 | 152 | 15 | 0 | 3 | 154 | 5 | 156 | 6.31e-105 | 299 |
| Msa0610520 | MtrunA17_Chr4g0010271 | 79.333 | 150 | 31 | 0 | 5 | 154 | 3 | 152 | 8.12e-93 | 268 |
| Msa0610520 | MtrunA17_Chr1g0169861 | 79.333 | 150 | 31 | 0 | 5 | 154 | 53 | 202 | 1.10e-91 | 267 |
| Msa0610520 | MtrunA17_Chr7g0237561 | 76.667 | 150 | 35 | 0 | 5 | 154 | 3 | 152 | 9.13e-88 | 255 |
| Msa0610520 | MtrunA17_Chr7g0237521 | 70.000 | 150 | 45 | 0 | 5 | 154 | 3 | 152 | 1.43e-80 | 237 |
| Msa0610520 | MtrunA17_Chr2g0296021 | 68.000 | 150 | 48 | 0 | 4 | 153 | 2 | 151 | 1.91e-78 | 232 |
| Msa0610520 | MtrunA17_Chr1g0210521 | 54.118 | 170 | 59 | 2 | 4 | 154 | 2 | 171 | 2.87e-68 | 207 |
| Msa0610520 | MtrunA17_Chr4g0010211 | 79.775 | 89 | 18 | 0 | 66 | 154 | 3 | 91 | 3.90e-49 | 154 |
| Msa0610520 | MtrunA17_Chr1g0169851 | 69.608 | 102 | 31 | 0 | 59 | 160 | 8 | 109 | 4.44e-49 | 155 |
| Msa0610520 | MtrunA17_Chr5g0441741 | 37.162 | 148 | 90 | 3 | 8 | 154 | 3 | 148 | 2.69e-29 | 107 |
| Msa0610520 | MtrunA17_Chr4g0026121 | 32.000 | 150 | 97 | 4 | 7 | 154 | 2 | 148 | 2.04e-27 | 102 |
| Msa0610520 | MtrunA17_Chr4g0064371 | 31.579 | 152 | 97 | 3 | 8 | 154 | 3 | 152 | 5.20e-23 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610520 | AT1G04760.2 | 80.667 | 150 | 29 | 0 | 5 | 154 | 3 | 152 | 2.36e-92 | 267 |
| Msa0610520 | AT1G04760.1 | 80.667 | 150 | 29 | 0 | 5 | 154 | 3 | 152 | 2.36e-92 | 267 |
| Msa0610520 | AT2G32670.1 | 80.000 | 150 | 30 | 0 | 5 | 154 | 68 | 217 | 2.91e-91 | 267 |
| Msa0610520 | AT2G33120.1 | 80.000 | 150 | 30 | 0 | 5 | 154 | 3 | 152 | 3.46e-91 | 265 |
| Msa0610520 | AT1G04750.1 | 78.667 | 150 | 32 | 0 | 5 | 154 | 3 | 152 | 2.56e-90 | 262 |
| Msa0610520 | AT2G33120.2 | 75.316 | 158 | 31 | 1 | 5 | 154 | 3 | 160 | 1.15e-87 | 256 |
| Msa0610520 | AT2G33110.2 | 70.000 | 150 | 45 | 0 | 5 | 154 | 3 | 152 | 1.13e-79 | 234 |
| Msa0610520 | AT2G33110.1 | 70.000 | 150 | 45 | 0 | 5 | 154 | 3 | 152 | 7.73e-79 | 233 |
| Msa0610520 | AT4G15780.1 | 69.333 | 150 | 45 | 1 | 5 | 153 | 3 | 152 | 4.05e-77 | 228 |
| Msa0610520 | AT3G54300.3 | 56.140 | 171 | 54 | 2 | 4 | 154 | 2 | 171 | 5.25e-68 | 206 |
| Msa0610520 | AT3G54300.2 | 56.140 | 171 | 54 | 2 | 4 | 154 | 2 | 171 | 5.25e-68 | 206 |
| Msa0610520 | AT3G54300.1 | 56.140 | 171 | 54 | 2 | 4 | 154 | 2 | 171 | 5.25e-68 | 206 |
| Msa0610520 | AT1G04750.2 | 82.432 | 74 | 13 | 0 | 81 | 154 | 1 | 74 | 3.64e-40 | 132 |
| Msa0610520 | AT1G04750.4 | 82.432 | 74 | 13 | 0 | 81 | 154 | 1 | 74 | 3.64e-40 | 132 |
| Msa0610520 | AT1G04750.3 | 82.432 | 74 | 13 | 0 | 81 | 154 | 1 | 74 | 3.64e-40 | 132 |
| Msa0610520 | AT4G32150.1 | 37.584 | 149 | 90 | 3 | 7 | 154 | 2 | 148 | 3.50e-30 | 109 |
| Msa0610520 | AT5G11150.1 | 38.000 | 150 | 89 | 3 | 7 | 154 | 2 | 149 | 5.51e-30 | 108 |
| Msa0610520 | AT5G11150.2 | 38.000 | 150 | 89 | 3 | 7 | 154 | 2 | 149 | 9.74e-30 | 108 |
| Msa0610520 | AT5G22360.1 | 34.437 | 151 | 93 | 4 | 7 | 154 | 2 | 149 | 2.76e-27 | 102 |
| Msa0610520 | AT2G25340.1 | 33.557 | 149 | 96 | 3 | 7 | 154 | 2 | 148 | 2.78e-25 | 97.1 |
Find 37 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATATGTTCCTTCAATTT+TGG | 0.127814 | 4_2:+58317333 | None:intergenic |
| AACAGCTTGAATAAGGAATT+TGG | 0.135464 | 4_2:-58317445 | Msa0610520:CDS |
| TTCAATTACCTCGTCGATAA+TGG | 0.314519 | 4_2:-58317869 | Msa0610520:CDS |
| TGCACCTAACAGCTTGAATA+AGG | 0.338054 | 4_2:-58317452 | Msa0610520:CDS |
| ACAGCTTGAATAAGGAATTT+GGG | 0.392757 | 4_2:-58317444 | Msa0610520:intron |
| GCAAGCTTACTCACCTCCTC+CGG | 0.394354 | 4_2:+58317294 | None:intergenic |
| GTTGAAGTTTCCGCTGAATT+CGG | 0.415620 | 4_2:+58317967 | None:intergenic |
| AATTCCTTATTCAAGCTGTT+AGG | 0.425518 | 4_2:+58317448 | None:intergenic |
| TTGTGGCAGGCCAAAATTGA+AGG | 0.466510 | 4_2:-58317343 | Msa0610520:intron |
| CATGATGGAGAATATTGAAA+AGG | 0.507884 | 4_2:-58317235 | Msa0610520:CDS |
| TTGTGTTGTTGCGGATGAAA+CGG | 0.512801 | 4_2:-58317560 | Msa0610520:CDS |
| GCTTGCTAAGGTGAAGGCTC+AGG | 0.546240 | 4_2:-58317277 | Msa0610520:CDS |
| CAAGCTTACTCACCTCCTCC+GGG | 0.549863 | 4_2:+58317295 | None:intergenic |
| GTGAATTTGTTGTTAGACGC+TGG | 0.551142 | 4_2:+58317914 | None:intergenic |
| AACGGTTGGAAGACAAGTGC+CGG | 0.560243 | 4_2:-58317542 | Msa0610520:CDS |
| TTTGTTGCGAAATATGGTGG+TGG | 0.569761 | 4_2:-58317490 | Msa0610520:CDS |
| CTGAAGGCATTGAAAAGCGA+TGG | 0.572755 | 4_2:+58317943 | None:intergenic |
| ATTATCGACGAGGTAATTGA+AGG | 0.574959 | 4_2:+58317871 | None:intergenic |
| CTCTTAGGTTAAAGTAGAAG+AGG | 0.575526 | 4_2:+58317209 | None:intergenic |
| AAATTCACTTACAATTGTGA+TGG | 0.582315 | 4_2:-58317899 | Msa0610520:CDS |
| TTGTGTTGATCACCCGGAGG+AGG | 0.583937 | 4_2:-58317307 | Msa0610520:CDS |
| GCAGTATTGTGTTGATCACC+CGG | 0.590880 | 4_2:-58317313 | Msa0610520:CDS |
| TAGACGCTGGAAGCTTCTGA+AGG | 0.592334 | 4_2:+58317927 | None:intergenic |
| GAGTAAGCTTGCTAAGGTGA+AGG | 0.597551 | 4_2:-58317283 | Msa0610520:CDS |
| TTGTTGCGAAATATGGTGGT+GGG | 0.599780 | 4_2:-58317489 | Msa0610520:CDS |
| TGAAGTGAAAGGTGTCATGA+TGG | 0.602006 | 4_2:-58317250 | Msa0610520:CDS |
| GGAGGTGAGTAAGCTTGCTA+AGG | 0.602293 | 4_2:-58317289 | Msa0610520:CDS |
| GTTGTTGCGGATGAAACGGT+TGG | 0.620353 | 4_2:-58317556 | Msa0610520:CDS |
| GCTCAGGTGTCTGAAGTGAA+AGG | 0.620623 | 4_2:-58317261 | Msa0610520:CDS |
| TGTAGCGTATTGTGTTGTTG+CGG | 0.643271 | 4_2:-58317569 | Msa0610520:intron |
| TGCGAAATATGGTGGTGGGA+AGG | 0.648574 | 4_2:-58317485 | Msa0610520:CDS |
| TCTGAATACACCGAATTCAG+CGG | 0.660683 | 4_2:-58317977 | Msa0610520:CDS |
| ATCTACGCTTTCGTTTCTCG+CGG | 0.661937 | 4_2:-58318013 | Msa0610520:CDS |
| GGTTGGAAGACAAGTGCCGG+TGG | 0.663656 | 4_2:-58317539 | Msa0610520:CDS |
| ACACGTTCCAGAAAAGCCAC+CGG | 0.669559 | 4_2:+58317523 | None:intergenic |
| AACTGTAGCCATTATCGACG+AGG | 0.726012 | 4_2:+58317861 | None:intergenic |
| GTATTGTGTTGATCACCCGG+AGG | 0.776651 | 4_2:-58317310 | Msa0610520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTAAAAGTGATTTT+AGG | - | chr4_2:58317553-58317572 | Msa0610520:CDS | 10.0% |
| !!! | TTATTATTAAAAGTGATTTT+AGG | - | chr4_2:58317553-58317572 | Msa0610520:CDS | 10.0% |
| !! | TACTGATATAACTAATTTCT+AGG | + | chr4_2:58317514-58317533 | None:intergenic | 20.0% |
| !!! | ATTAAAAGTGATTTTAGGTT+AGG | - | chr4_2:58317558-58317577 | Msa0610520:CDS | 20.0% |
| !!! | TTAAAAGTGATTTTAGGTTA+GGG | - | chr4_2:58317559-58317578 | Msa0610520:CDS | 20.0% |
| !! | TGTGATTTGATATTTAATTG+TGG | - | chr4_2:58317889-58317908 | Msa0610520:CDS | 20.0% |
| !! | TACTGATATAACTAATTTCT+AGG | + | chr4_2:58317514-58317533 | None:intergenic | 20.0% |
| !!! | ATTAAAAGTGATTTTAGGTT+AGG | - | chr4_2:58317558-58317577 | Msa0610520:CDS | 20.0% |
| !!! | TTAAAAGTGATTTTAGGTTA+GGG | - | chr4_2:58317559-58317578 | Msa0610520:CDS | 20.0% |
| !! | TGTGATTTGATATTTAATTG+TGG | - | chr4_2:58317889-58317908 | Msa0610520:CDS | 20.0% |
| ! | AAATTCACTTACAATTGTGA+TGG | - | chr4_2:58317350-58317369 | Msa0610520:intron | 25.0% |
| !! | TGAGTTTATGATGATGATTT+AGG | - | chr4_2:58317831-58317850 | Msa0610520:intron | 25.0% |
| !! | GAGTTTATGATGATGATTTA+GGG | - | chr4_2:58317832-58317851 | Msa0610520:intron | 25.0% |
| ! | ATTTGATATTTAATTGTGGC+AGG | - | chr4_2:58317893-58317912 | Msa0610520:CDS | 25.0% |
| ! | AAATTCACTTACAATTGTGA+TGG | - | chr4_2:58317350-58317369 | Msa0610520:intron | 25.0% |
| !! | TGAGTTTATGATGATGATTT+AGG | - | chr4_2:58317831-58317850 | Msa0610520:intron | 25.0% |
| !! | GAGTTTATGATGATGATTTA+GGG | - | chr4_2:58317832-58317851 | Msa0610520:intron | 25.0% |
| ! | ATTTGATATTTAATTGTGGC+AGG | - | chr4_2:58317893-58317912 | Msa0610520:CDS | 25.0% |
| ! | GATGATTTTGTTGCGAAATA+TGG | - | chr4_2:58317753-58317772 | Msa0610520:intron | 30.0% |
| AATTCCTTATTCAAGCTGTT+AGG | + | chr4_2:58317804-58317823 | None:intergenic | 30.0% | |
| AACAGCTTGAATAAGGAATT+TGG | - | chr4_2:58317804-58317823 | Msa0610520:intron | 30.0% | |
| ACAGCTTGAATAAGGAATTT+GGG | - | chr4_2:58317805-58317824 | Msa0610520:intron | 30.0% | |
| !!! | TTGCGATTTTTGTTGTTGAT+GGG | - | chr4_2:58317859-58317878 | Msa0610520:intron | 30.0% |
| ! | TGCATATGTTCCTTCAATTT+TGG | + | chr4_2:58317919-58317938 | None:intergenic | 30.0% |
| ! | CATGATGGAGAATATTGAAA+AGG | - | chr4_2:58318014-58318033 | Msa0610520:CDS | 30.0% |
| ! | GATGATTTTGTTGCGAAATA+TGG | - | chr4_2:58317753-58317772 | Msa0610520:intron | 30.0% |
| AATTCCTTATTCAAGCTGTT+AGG | + | chr4_2:58317804-58317823 | None:intergenic | 30.0% | |
| AACAGCTTGAATAAGGAATT+TGG | - | chr4_2:58317804-58317823 | Msa0610520:intron | 30.0% | |
| ACAGCTTGAATAAGGAATTT+GGG | - | chr4_2:58317805-58317824 | Msa0610520:intron | 30.0% | |
| !!! | TTGCGATTTTTGTTGTTGAT+GGG | - | chr4_2:58317859-58317878 | Msa0610520:intron | 30.0% |
| ! | TGCATATGTTCCTTCAATTT+TGG | + | chr4_2:58317919-58317938 | None:intergenic | 30.0% |
| ! | CATGATGGAGAATATTGAAA+AGG | - | chr4_2:58318014-58318033 | Msa0610520:CDS | 30.0% |
| ! | AAGCGTAGATCAGAGATTTT+TGG | + | chr4_2:58317226-58317245 | None:intergenic | 35.0% |
| ATTATCGACGAGGTAATTGA+AGG | + | chr4_2:58317381-58317400 | None:intergenic | 35.0% | |
| TTCAATTACCTCGTCGATAA+TGG | - | chr4_2:58317380-58317399 | Msa0610520:intron | 35.0% | |
| ! | GATTTTGTTGCGAAATATGG+TGG | - | chr4_2:58317756-58317775 | Msa0610520:intron | 35.0% |
| !!! | GTTGCGATTTTTGTTGTTGA+TGG | - | chr4_2:58317858-58317877 | Msa0610520:intron | 35.0% |
| ! | AAGCGTAGATCAGAGATTTT+TGG | + | chr4_2:58317226-58317245 | None:intergenic | 35.0% |
| ATTATCGACGAGGTAATTGA+AGG | + | chr4_2:58317381-58317400 | None:intergenic | 35.0% | |
| TTCAATTACCTCGTCGATAA+TGG | - | chr4_2:58317380-58317399 | Msa0610520:intron | 35.0% | |
| ! | GATTTTGTTGCGAAATATGG+TGG | - | chr4_2:58317756-58317775 | Msa0610520:intron | 35.0% |
| !!! | GTTGCGATTTTTGTTGTTGA+TGG | - | chr4_2:58317858-58317877 | Msa0610520:intron | 35.0% |
| TCTGAATACACCGAATTCAG+CGG | - | chr4_2:58317272-58317291 | Msa0610520:CDS | 40.0% | |
| GTTGAAGTTTCCGCTGAATT+CGG | + | chr4_2:58317285-58317304 | None:intergenic | 40.0% | |
| !! | GTGAATTTGTTGTTAGACGC+TGG | + | chr4_2:58317338-58317357 | None:intergenic | 40.0% |
| GAACTACGATTACGCTAGAT+CGG | + | chr4_2:58317462-58317481 | None:intergenic | 40.0% | |
| ! | TGTAGCGTATTGTGTTGTTG+CGG | - | chr4_2:58317680-58317699 | Msa0610520:intron | 40.0% |
| ! | TTGTGTTGTTGCGGATGAAA+CGG | - | chr4_2:58317689-58317708 | Msa0610520:intron | 40.0% |
| TTTGTTGCGAAATATGGTGG+TGG | - | chr4_2:58317759-58317778 | Msa0610520:intron | 40.0% | |
| TTGTTGCGAAATATGGTGGT+GGG | - | chr4_2:58317760-58317779 | Msa0610520:intron | 40.0% | |
| TGCACCTAACAGCTTGAATA+AGG | - | chr4_2:58317797-58317816 | Msa0610520:intron | 40.0% | |
| !! | TGAAGTGAAAGGTGTCATGA+TGG | - | chr4_2:58317999-58318018 | Msa0610520:CDS | 40.0% |
| TCTGAATACACCGAATTCAG+CGG | - | chr4_2:58317272-58317291 | Msa0610520:CDS | 40.0% | |
| GTTGAAGTTTCCGCTGAATT+CGG | + | chr4_2:58317285-58317304 | None:intergenic | 40.0% | |
| !! | GTGAATTTGTTGTTAGACGC+TGG | + | chr4_2:58317338-58317357 | None:intergenic | 40.0% |
| GAACTACGATTACGCTAGAT+CGG | + | chr4_2:58317462-58317481 | None:intergenic | 40.0% | |
| ! | TGTAGCGTATTGTGTTGTTG+CGG | - | chr4_2:58317680-58317699 | Msa0610520:intron | 40.0% |
| ! | TTGTGTTGTTGCGGATGAAA+CGG | - | chr4_2:58317689-58317708 | Msa0610520:intron | 40.0% |
| TTTGTTGCGAAATATGGTGG+TGG | - | chr4_2:58317759-58317778 | Msa0610520:intron | 40.0% | |
| TTGTTGCGAAATATGGTGGT+GGG | - | chr4_2:58317760-58317779 | Msa0610520:intron | 40.0% | |
| TGCACCTAACAGCTTGAATA+AGG | - | chr4_2:58317797-58317816 | Msa0610520:intron | 40.0% | |
| !! | TGAAGTGAAAGGTGTCATGA+TGG | - | chr4_2:58317999-58318018 | Msa0610520:CDS | 40.0% |
| ATCTACGCTTTCGTTTCTCG+CGG | - | chr4_2:58317236-58317255 | Msa0610520:CDS | 45.0% | |
| !! | CTGAAGGCATTGAAAAGCGA+TGG | + | chr4_2:58317309-58317328 | None:intergenic | 45.0% |
| AACTGTAGCCATTATCGACG+AGG | + | chr4_2:58317391-58317410 | None:intergenic | 45.0% | |
| TTGTGGCAGGCCAAAATTGA+AGG | - | chr4_2:58317906-58317925 | Msa0610520:CDS | 45.0% | |
| ! | GCAGTATTGTGTTGATCACC+CGG | - | chr4_2:58317936-58317955 | Msa0610520:CDS | 45.0% |
| !! | GAGTAAGCTTGCTAAGGTGA+AGG | - | chr4_2:58317966-58317985 | Msa0610520:CDS | 45.0% |
| ATCTACGCTTTCGTTTCTCG+CGG | - | chr4_2:58317236-58317255 | Msa0610520:CDS | 45.0% | |
| !! | CTGAAGGCATTGAAAAGCGA+TGG | + | chr4_2:58317309-58317328 | None:intergenic | 45.0% |
| AACTGTAGCCATTATCGACG+AGG | + | chr4_2:58317391-58317410 | None:intergenic | 45.0% | |
| TTGTGGCAGGCCAAAATTGA+AGG | - | chr4_2:58317906-58317925 | Msa0610520:CDS | 45.0% | |
| ! | GCAGTATTGTGTTGATCACC+CGG | - | chr4_2:58317936-58317955 | Msa0610520:CDS | 45.0% |
| !! | GAGTAAGCTTGCTAAGGTGA+AGG | - | chr4_2:58317966-58317985 | Msa0610520:CDS | 45.0% |
| TAGACGCTGGAAGCTTCTGA+AGG | + | chr4_2:58317325-58317344 | None:intergenic | 50.0% | |
| GTTGTTGCGGATGAAACGGT+TGG | - | chr4_2:58317693-58317712 | Msa0610520:intron | 50.0% | |
| AACGGTTGGAAGACAAGTGC+CGG | - | chr4_2:58317707-58317726 | Msa0610520:intron | 50.0% | |
| ACACGTTCCAGAAAAGCCAC+CGG | + | chr4_2:58317729-58317748 | None:intergenic | 50.0% | |
| !!! | GGCTTTTCTGGAACGTGTGA+AGG | - | chr4_2:58317731-58317750 | Msa0610520:intron | 50.0% |
| !! | TGCGAAATATGGTGGTGGGA+AGG | - | chr4_2:58317764-58317783 | Msa0610520:intron | 50.0% |
| ! | GTATTGTGTTGATCACCCGG+AGG | - | chr4_2:58317939-58317958 | Msa0610520:CDS | 50.0% |
| !! | GGAGGTGAGTAAGCTTGCTA+AGG | - | chr4_2:58317960-58317979 | Msa0610520:CDS | 50.0% |
| ! | GCTCAGGTGTCTGAAGTGAA+AGG | - | chr4_2:58317988-58318007 | Msa0610520:CDS | 50.0% |
| TAGACGCTGGAAGCTTCTGA+AGG | + | chr4_2:58317325-58317344 | None:intergenic | 50.0% | |
| GTTGTTGCGGATGAAACGGT+TGG | - | chr4_2:58317693-58317712 | Msa0610520:intron | 50.0% | |
| AACGGTTGGAAGACAAGTGC+CGG | - | chr4_2:58317707-58317726 | Msa0610520:intron | 50.0% | |
| ACACGTTCCAGAAAAGCCAC+CGG | + | chr4_2:58317729-58317748 | None:intergenic | 50.0% | |
| !!! | GGCTTTTCTGGAACGTGTGA+AGG | - | chr4_2:58317731-58317750 | Msa0610520:intron | 50.0% |
| !! | TGCGAAATATGGTGGTGGGA+AGG | - | chr4_2:58317764-58317783 | Msa0610520:intron | 50.0% |
| ! | GTATTGTGTTGATCACCCGG+AGG | - | chr4_2:58317939-58317958 | Msa0610520:CDS | 50.0% |
| !! | GGAGGTGAGTAAGCTTGCTA+AGG | - | chr4_2:58317960-58317979 | Msa0610520:CDS | 50.0% |
| ! | GCTCAGGTGTCTGAAGTGAA+AGG | - | chr4_2:58317988-58318007 | Msa0610520:CDS | 50.0% |
| !!! | ACAAGTGCCGGTGGCTTTTC+TGG | - | chr4_2:58317719-58317738 | Msa0610520:intron | 55.0% |
| ! | TTGTGTTGATCACCCGGAGG+AGG | - | chr4_2:58317942-58317961 | Msa0610520:CDS | 55.0% |
| CAAGCTTACTCACCTCCTCC+GGG | + | chr4_2:58317957-58317976 | None:intergenic | 55.0% | |
| GCAAGCTTACTCACCTCCTC+CGG | + | chr4_2:58317958-58317977 | None:intergenic | 55.0% | |
| ! | GCTTGCTAAGGTGAAGGCTC+AGG | - | chr4_2:58317972-58317991 | Msa0610520:CDS | 55.0% |
| !!! | ACAAGTGCCGGTGGCTTTTC+TGG | - | chr4_2:58317719-58317738 | Msa0610520:intron | 55.0% |
| ! | TTGTGTTGATCACCCGGAGG+AGG | - | chr4_2:58317942-58317961 | Msa0610520:CDS | 55.0% |
| CAAGCTTACTCACCTCCTCC+GGG | + | chr4_2:58317957-58317976 | None:intergenic | 55.0% | |
| GCAAGCTTACTCACCTCCTC+CGG | + | chr4_2:58317958-58317977 | None:intergenic | 55.0% | |
| ! | GCTTGCTAAGGTGAAGGCTC+AGG | - | chr4_2:58317972-58317991 | Msa0610520:CDS | 55.0% |
| !! | GGTTGGAAGACAAGTGCCGG+TGG | - | chr4_2:58317710-58317729 | Msa0610520:intron | 60.0% |
| !! | GGTTGGAAGACAAGTGCCGG+TGG | - | chr4_2:58317710-58317729 | Msa0610520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58317212 | 58318059 | 58317212 | ID=Msa0610520;Name=Msa0610520 |
| chr4_2 | mRNA | 58317212 | 58318059 | 58317212 | ID=Msa0610520-mRNA-1;Parent=Msa0610520;Name=Msa0610520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|160 |
| chr4_2 | exon | 58317864 | 58318059 | 58317864 | ID=Msa0610520-mRNA-1:exon:15294;Parent=Msa0610520-mRNA-1 |
| chr4_2 | exon | 58317445 | 58317586 | 58317445 | ID=Msa0610520-mRNA-1:exon:15293;Parent=Msa0610520-mRNA-1 |
| chr4_2 | exon | 58317212 | 58317356 | 58317212 | ID=Msa0610520-mRNA-1:exon:15292;Parent=Msa0610520-mRNA-1 |
| chr4_2 | CDS | 58317864 | 58318059 | 58317864 | ID=Msa0610520-mRNA-1:cds;Parent=Msa0610520-mRNA-1 |
| chr4_2 | CDS | 58317445 | 58317586 | 58317445 | ID=Msa0610520-mRNA-1:cds;Parent=Msa0610520-mRNA-1 |
| chr4_2 | CDS | 58317212 | 58317356 | 58317212 | ID=Msa0610520-mRNA-1:cds;Parent=Msa0610520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
