AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629240 MtrunA17_Chr4g0005561 99.412 170 1 0 1 170 1 170 1.42e-123 345
Msa0629240 MtrunA17_Chr7g0243261 84.706 170 26 0 1 170 1 170 2.01e-104 296
Msa0629240 MtrunA17_Chr5g0418311 51.205 166 78 1 8 170 15 180 2.03e-59 182
Msa0629240 MtrunA17_Chr4g0061181 46.552 174 89 1 1 170 1 174 1.53e-55 172
Msa0629240 MtrunA17_Chr7g0269431 41.772 79 44 2 56 133 33 110 8.44e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629240 AT3G08890.1 77.059 170 39 0 1 170 1 170 2.14e-99 284
Msa0629240 AT3G08890.2 77.059 170 39 0 1 170 1 170 2.14e-99 284
Msa0629240 AT5G37070.1 78.235 170 37 0 1 170 1 170 2.55e-98 281
Msa0629240 AT5G01610.2 75.294 170 42 0 1 170 1 170 6.13e-96 275
Msa0629240 AT5G01610.1 75.294 170 42 0 1 170 1 170 6.13e-96 275
Msa0629240 AT2G03350.1 49.390 164 80 1 7 167 12 175 7.04e-53 166
Msa0629240 AT1G02816.1 25.217 115 83 2 57 168 35 149 1.23e-12 62.8
Msa0629240 AT4G02370.1 27.368 95 68 1 56 149 34 128 1.34e-11 60.1
Msa0629240 AT4G02360.1 29.358 109 74 3 51 157 25 132 1.68e-11 59.7

Find 86 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTCTTCACCACTGTTAC+TGG 0.210400 4_3:+10112184 Msa0629240:CDS
CACCACTGTTACTGGTTATC+TGG 0.249379 4_3:+10112192 Msa0629240:CDS
AATTAGTAAATATGTATTTC+AGG 0.258967 4_3:+10112491 Msa0629240:three_prime_UTR
TGAAGACAAAAGTTATTATC+TGG 0.261455 4_3:+10112245 Msa0629240:CDS
AGGGGAAGGGAGGGGAGGGG+AGG 0.293137 4_3:+10112593 Msa0629240:three_prime_UTR
CTTCGATCCCTCGGAGAAAA+TGG 0.294455 4_3:-10112281 None:intergenic
GCCATTACCAGAGTTGTTAA+AGG 0.295014 4_3:+10112033 Msa0629240:CDS
GAAATGTGGAAAGTCTCTTT+AGG 0.299589 4_3:+10112546 Msa0629240:three_prime_UTR
TGGTTGGTCAACAAAGTAAA+AGG 0.300821 4_3:+10110767 Msa0629240:CDS
AGGGTTTAGGAGGGGAAGGG+AGG 0.315962 4_3:+10112583 Msa0629240:three_prime_UTR
TACTTTGTTGACCAACCATT+TGG 0.339849 4_3:-10110762 None:intergenic
AAGTCTCTTTAGGGTGTGTT+TGG 0.351605 4_3:+10112556 Msa0629240:three_prime_UTR
GGTACTGATCCTTGGACCTT+GGG 0.351627 4_3:+10112512 Msa0629240:three_prime_UTR
GGTTTAGGAGGGGAAGGGAG+GGG 0.354576 4_3:+10112585 Msa0629240:three_prime_UTR
TGTGTTTGGGAAGAGGGTTT+AGG 0.355055 4_3:+10112570 Msa0629240:three_prime_UTR
TTAGGAGGGGAAGGGAAGGG+AGG 0.360482 4_3:-10112771 None:intergenic
TTAGGAGGGGAAGGGAGGGG+AGG 0.369796 4_3:+10112588 Msa0629240:three_prime_UTR
GACAGAATTAAGCTCCTTGC+TGG 0.374345 4_3:-10109610 None:intergenic
ATTGTAGAAAGAAGGAGAAA+TGG 0.390997 4_3:+10109542 Msa0629240:exon
GGGGAAGGGAGGGGAGGGGA+GGG 0.397739 4_3:+10112594 Msa0629240:three_prime_UTR
GAGTTTAGGAGGGGAAGGGA+AGG 0.400445 4_3:-10112775 None:intergenic
TCAACAAGGTTGGATCCTAT+TGG 0.402846 4_3:+10109574 Msa0629240:CDS
TAGGAGGGGAAGGGAGGGGA+GGG 0.407805 4_3:+10112589 Msa0629240:three_prime_UTR
AGGTACTGATCCTTGGACCT+TGG 0.412100 4_3:+10112511 Msa0629240:three_prime_UTR
TCCTTTAACAACTCTGGTAA+TGG 0.418016 4_3:-10112034 None:intergenic
AGGAGGGGAAGGGAGGGGAG+GGG 0.421315 4_3:+10112590 Msa0629240:three_prime_UTR
GGCTTTCTGATTGAACCAAT+AGG 0.431334 4_3:-10109589 None:intergenic
GGGTTTAGGAGGGGAAGGGA+GGG 0.431828 4_3:+10112584 Msa0629240:three_prime_UTR
GGTCTGCGAAGTAGGCTATA+AGG 0.432562 4_3:+10112147 Msa0629240:CDS
AAATGTGGAAAGTCTCTTTA+GGG 0.433500 4_3:+10112547 Msa0629240:three_prime_UTR
TTAGGGTGTGTTTGGGAAGA+GGG 0.437533 4_3:+10112564 Msa0629240:three_prime_UTR
TTTAGGGTGTGTTTGGGAAG+AGG 0.438087 4_3:+10112563 Msa0629240:three_prime_UTR
TCATACAAGAAGACTCAAAA+TGG 0.439169 4_3:-10112452 None:intergenic
AAGGAGTATGATCTACCAAT+AGG 0.443273 4_3:+10112052 Msa0629240:CDS
TCTTTCTGATTGTAGAAAGA+AGG 0.444898 4_3:+10109534 Msa0629240:five_prime_UTR
AGGAAAGCTAGCAGACATAG+AGG 0.449690 4_3:+10112219 Msa0629240:CDS
AGTCTCTTTAGGGTGTGTTT+GGG 0.455690 4_3:+10112557 Msa0629240:three_prime_UTR
GTATTTCAGGTACTGATCCT+TGG 0.456774 4_3:+10112504 Msa0629240:three_prime_UTR
ATTCCTCAGGTCTGCGAAGT+AGG 0.457321 4_3:+10112139 Msa0629240:CDS
TTTGAGTCTTCTTGTATGAT+GGG 0.457461 4_3:+10112456 Msa0629240:three_prime_UTR
GAAGAGAGTTTAGGAGGGGA+AGG 0.462158 4_3:-10112780 None:intergenic
AAAAGTCCTTGCGAAGAAGC+AGG 0.464853 4_3:+10109448 Msa0629240:five_prime_UTR
CACATAGAGCTTCGATCCCT+CGG 0.465720 4_3:-10112290 None:intergenic
TCACGAGGAAAGATTCCTAT+TGG 0.469668 4_3:-10112067 None:intergenic
GAAGAGGGTTTAGGAGGGGA+AGG 0.471788 4_3:+10112579 Msa0629240:three_prime_UTR
AGTTTAGGAGGGGAAGGGAA+GGG 0.476045 4_3:-10112774 None:intergenic
GCTTGAAGTCTTCATTCCTC+AGG 0.483186 4_3:+10112126 Msa0629240:CDS
GATCAAGTATTCAACAAGGT+TGG 0.497292 4_3:+10109564 Msa0629240:CDS
CGTAACATCATATGCTTCCC+TGG 0.503981 4_3:-10112338 None:intergenic
TTTGGGAAGAGGGTTTAGGA+GGG 0.508165 4_3:+10112574 Msa0629240:three_prime_UTR
GAAGACAAAAGTTATTATCT+GGG 0.508796 4_3:+10112246 Msa0629240:CDS
AGTTGCCCTGCTTCTTCGCA+AGG 0.518540 4_3:-10109454 None:intergenic
TCGAAGCTCTATGTGACTGC+TGG 0.534882 4_3:+10112298 Msa0629240:CDS
GTATCGAAGGCGGAACCAAA+TGG 0.539035 4_3:+10110747 Msa0629240:CDS
GTTACTGGTTATCTGGAGAA+AGG 0.540770 4_3:+10112199 Msa0629240:CDS
AGTCTTCTTGTATGATGGGG+TGG 0.541748 4_3:+10112460 Msa0629240:three_prime_UTR
GTTTGGGAAGAGGGTTTAGG+AGG 0.542211 4_3:+10112573 Msa0629240:three_prime_UTR
GCATATGATGTTACGAGAGA+TGG 0.542619 4_3:+10112346 Msa0629240:CDS
TAGGAGGGGAAGGGAAGGGA+GGG 0.546633 4_3:-10112770 None:intergenic
AAGAGAGTTTAGGAGGGGAA+GGG 0.547206 4_3:-10112779 None:intergenic
TCATACTCCTTTAACAACTC+TGG 0.548889 4_3:-10112040 None:intergenic
AAGAGGGTTTAGGAGGGGAA+GGG 0.556837 4_3:+10112580 Msa0629240:three_prime_UTR
AACAGAGATGAATGTGATGA+TGG 0.557115 4_3:-10109489 None:intergenic
TACGAATTTAACGAAGAGAC+GGG 0.578620 4_3:+10112100 Msa0629240:CDS
CTACGAATTTAACGAAGAGA+CGG 0.579413 4_3:+10112099 Msa0629240:CDS
GCATGAAGAAAACAAGAACC+AGG 0.584014 4_3:+10112320 Msa0629240:CDS
TCGTAGTTTGTTGCATCACG+AGG 0.584895 4_3:-10112082 None:intergenic
AAATCACAACCCAAGGTCCA+AGG 0.587281 4_3:-10112521 None:intergenic
AAAGTCCTTGCGAAGAAGCA+GGG 0.590586 4_3:+10109449 Msa0629240:five_prime_UTR
AGCAAGGAGCTTAATTCTGT+CGG 0.592969 4_3:+10109612 Msa0629240:CDS
TGCGAAGAAGCAGGGCAACT+CGG 0.596582 4_3:+10109457 Msa0629240:five_prime_UTR
TTGAGTCTTCTTGTATGATG+GGG 0.600947 4_3:+10112457 Msa0629240:three_prime_UTR
GGAAAGCTAGCAGACATAGA+GGG 0.604204 4_3:+10112220 Msa0629240:CDS
TTGGGAAGAGGGTTTAGGAG+GGG 0.620347 4_3:+10112575 Msa0629240:three_prime_UTR
CGAAGGCGGAACCAAATGGT+TGG 0.621013 4_3:+10110751 Msa0629240:CDS
GTTCAATCAGAAAGCCAGCA+AGG 0.622010 4_3:+10109596 Msa0629240:CDS
ATTTCTCAAATCACAACCCA+AGG 0.635629 4_3:-10112528 None:intergenic
GGGTTGTGATTTGAGAAATG+TGG 0.644526 4_3:+10112532 Msa0629240:three_prime_UTR
AATGGTCTATAAAACAACAA+AGG 0.654920 4_3:-10112434 None:intergenic
TCACTGTCGAACAGTATCGA+AGG 0.655695 4_3:+10110734 Msa0629240:CDS
TAGCCTACTTCGCAGACCTG+AGG 0.660590 4_3:-10112142 None:intergenic
CTCCAGATAACCAGTAACAG+TGG 0.669904 4_3:-10112194 None:intergenic
CATGAAGAAAACAAGAACCA+GGG 0.684808 4_3:+10112321 Msa0629240:CDS
AGTGGTGAAGAAACGCAAGA+CGG 0.697268 4_3:-10112176 None:intergenic
AATGGATCAAGTATTCAACA+AGG 0.730089 4_3:+10109560 Msa0629240:exon
CTGTCGAACAGTATCGAAGG+CGG 0.747673 4_3:+10110737 Msa0629240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCCAAAATTATTAATTTT+TGG + chr4_3:10109708-10109727 Msa0629240:intron 10.0%
!!! TATCCAAAAATTAATAATTT+TGG - chr4_3:10109714-10109733 None:intergenic 10.0%
!! TAATGTCTTTAAATTAAAAA+AGG - chr4_3:10112628-10112647 None:intergenic 10.0%
!! AAAATAATTTAACAGTGAAA+AGG + chr4_3:10111524-10111543 Msa0629240:intron 15.0%
!! TCTATTAACAAAATTATAGA+AGG - chr4_3:10111655-10111674 None:intergenic 15.0%
!! AATTAGTAAATATGTATTTC+AGG + chr4_3:10112491-10112510 Msa0629240:three_prime_UTR 15.0%
!! AAAAACTGGAAAATTGAAAA+GGG - chr4_3:10109666-10109685 None:intergenic 20.0%
!! AAAAAACTGGAAAATTGAAA+AGG - chr4_3:10109667-10109686 None:intergenic 20.0%
!! AGATGATGAATATAAAAAAC+TGG - chr4_3:10109680-10109699 None:intergenic 20.0%
!! ATATCTCAATTTCTTCTAAA+TGG + chr4_3:10109828-10109847 Msa0629240:intron 20.0%
!! TATTTAATTCTGATTAAGCA+AGG + chr4_3:10110487-10110506 Msa0629240:intron 20.0%
!! ATTTAATTCTGATTAAGCAA+GGG + chr4_3:10110488-10110507 Msa0629240:intron 20.0%
!! TTCTATCAATTTCTCAATTT+GGG - chr4_3:10110904-10110923 None:intergenic 20.0%
!! TTTCTATCAATTTCTCAATT+TGG - chr4_3:10110905-10110924 None:intergenic 20.0%
!!! TCACTTATAAATACATTTTC+AGG - chr4_3:10111138-10111157 None:intergenic 20.0%
!! TTAATATACACCTTAGTAAT+TGG + chr4_3:10111281-10111300 Msa0629240:intron 20.0%
!! AAATACATAAGTGTATTTGT+TGG + chr4_3:10111870-10111889 Msa0629240:intron 20.0%
!! AGAATAGATTTCTATATTGA+AGG + chr4_3:10111973-10111992 Msa0629240:intron 20.0%
!! GAATAGATTTCTATATTGAA+GGG + chr4_3:10111974-10111993 Msa0629240:intron 20.0%
! AAAACTGGAAAATTGAAAAG+GGG - chr4_3:10109665-10109684 None:intergenic 25.0%
!! TTTTGGATAATTAAACCTCA+TGG + chr4_3:10109725-10109744 Msa0629240:intron 25.0%
! TAATTAAACCTCATGGAAAT+TGG + chr4_3:10109732-10109751 Msa0629240:intron 25.0%
! TCAATTGAATTGAATTGATG+CGG + chr4_3:10109775-10109794 Msa0629240:intron 25.0%
! TCCAAAATGTTTATGTTTGT+TGG + chr4_3:10109863-10109882 Msa0629240:intron 25.0%
!! ACCAACAAACATAAACATTT+TGG - chr4_3:10109867-10109886 None:intergenic 25.0%
!! AAATGTTTATGTTTGTTGGT+AGG + chr4_3:10109867-10109886 Msa0629240:intron 25.0%
!!! TTTTAGGTGATTTTAAGTAC+TGG + chr4_3:10110186-10110205 Msa0629240:intron 25.0%
! TTAATGAGATGATTCTGTTA+CGG + chr4_3:10110377-10110396 Msa0629240:intron 25.0%
!! AAAGATGAATTTTCATTGCT+TGG + chr4_3:10110672-10110691 Msa0629240:intron 25.0%
! ATAAATGTTTGAGCAACATA+TGG - chr4_3:10110809-10110828 None:intergenic 25.0%
! TTGAGAAATTGATAGAAAAC+TGG + chr4_3:10110907-10110926 Msa0629240:intron 25.0%
!! AATTTACAAGCCTATTTTGT+AGG + chr4_3:10111170-10111189 Msa0629240:intron 25.0%
!! ATTTACAAGCCTATTTTGTA+GGG + chr4_3:10111171-10111190 Msa0629240:intron 25.0%
! TTGGAAGGAAAAATTGAATT+GGG - chr4_3:10111207-10111226 None:intergenic 25.0%
! ATTGGAAGGAAAAATTGAAT+TGG - chr4_3:10111208-10111227 None:intergenic 25.0%
! TTGATGTAATTACATGCAAT+GGG - chr4_3:10111232-10111251 None:intergenic 25.0%
! AAATTTAGTACTTTGAACCA+TGG + chr4_3:10111380-10111399 Msa0629240:intron 25.0%
!! GGTCTGTTTATAAGTTATTT+TGG + chr4_3:10111404-10111423 Msa0629240:intron 25.0%
!! CAAAAGACTTCTAAAAATTG+AGG - chr4_3:10111610-10111629 None:intergenic 25.0%
!!! CAATTTTTAGAAGTCTTTTG+AGG + chr4_3:10111610-10111629 Msa0629240:intron 25.0%
! ATAATAGACAATTCATGAAG+TGG - chr4_3:10111744-10111763 None:intergenic 25.0%
! TGAATTGTCTATTATCCAAA+AGG + chr4_3:10111749-10111768 Msa0629240:intron 25.0%
! AATAAGTATGAACATCATGA+AGG + chr4_3:10111784-10111803 Msa0629240:intron 25.0%
! ATAAGTATGAACATCATGAA+GGG + chr4_3:10111785-10111804 Msa0629240:intron 25.0%
!!! TATCTCTAAAACTGTAGTAA+TGG - chr4_3:10111849-10111868 None:intergenic 25.0%
! TCTATTTGACATAGCAATAA+TGG + chr4_3:10111934-10111953 Msa0629240:intron 25.0%
! ACTTAATTATATCACTTTGC+AGG + chr4_3:10111998-10112017 Msa0629240:intron 25.0%
! TGAAGACAAAAGTTATTATC+TGG + chr4_3:10112245-10112264 Msa0629240:CDS 25.0%
! GAAGACAAAAGTTATTATCT+GGG + chr4_3:10112246-10112265 Msa0629240:CDS 25.0%
!!! AAGTTTTAGAACTTATCTAC+AGG - chr4_3:10112376-10112395 None:intergenic 25.0%
! AATGGTCTATAAAACAACAA+AGG - chr4_3:10112437-10112456 None:intergenic 25.0%
TCTTTCTGATTGTAGAAAGA+AGG + chr4_3:10109534-10109553 Msa0629240:five_prime_UTR 30.0%
ATTGTAGAAAGAAGGAGAAA+TGG + chr4_3:10109542-10109561 Msa0629240:exon 30.0%
AATGGATCAAGTATTCAACA+AGG + chr4_3:10109560-10109579 Msa0629240:exon 30.0%
CTTTCAAAAGTAGAAGTTCA+CGG + chr4_3:10109950-10109969 Msa0629240:intron 30.0%
!!! TTTCCTTGTTTTTGTTGAAC+TGG - chr4_3:10110017-10110036 None:intergenic 30.0%
! TTATCGGTTAGACAAAAACA+AGG - chr4_3:10110083-10110102 None:intergenic 30.0%
! TTGCTTGTCGTTAGAATTTT+AGG + chr4_3:10110170-10110189 Msa0629240:intron 30.0%
ATTCATCAAAAACTAAGAGC+TGG - chr4_3:10110258-10110277 None:intergenic 30.0%
TGATGAATAAGTCATGACAT+CGG + chr4_3:10110270-10110289 Msa0629240:intron 30.0%
CCACATCTACAAGTAAAATT+AGG - chr4_3:10110318-10110337 None:intergenic 30.0%
! CCTAATTTTACTTGTAGATG+TGG + chr4_3:10110315-10110334 Msa0629240:intron 30.0%
TTATCTCTAACAGGAAGATA+AGG - chr4_3:10110585-10110604 None:intergenic 30.0%
CATTACTCATTATCTCTAAC+AGG - chr4_3:10110594-10110613 None:intergenic 30.0%
TTTGAGCAACATATGGAAAT+AGG - chr4_3:10110802-10110821 None:intergenic 30.0%
!!! ACATTTATCTTTTCAAGTCC+TGG + chr4_3:10110821-10110840 Msa0629240:intron 30.0%
TGAAATCTTAAATGTTGCAC+AGG - chr4_3:10110863-10110882 None:intergenic 30.0%
! TTTCTCAATTTGGGATTACA+AGG - chr4_3:10110895-10110914 None:intergenic 30.0%
CAGAAAGGTAAGGAAAAAAT+TGG - chr4_3:10111029-10111048 None:intergenic 30.0%
TGATGTAATTACATGCAATG+GGG - chr4_3:10111231-10111250 None:intergenic 30.0%
GTTGATGTAATTACATGCAA+TGG - chr4_3:10111233-10111252 None:intergenic 30.0%
! TTACTGACTAACAGTTCATA+CGG - chr4_3:10111558-10111577 None:intergenic 30.0%
ATGTTCATACTTATTGCTTG+AGG - chr4_3:10111779-10111798 None:intergenic 30.0%
TAAGTATGAACATCATGAAG+GGG + chr4_3:10111786-10111805 Msa0629240:intron 30.0%
GAAATGGAGAGAATAAACAA+TGG - chr4_3:10111824-10111843 None:intergenic 30.0%
! AACTGTAGTAATGGAAGAAA+TGG - chr4_3:10111840-10111859 None:intergenic 30.0%
AACTGTGATTTCAAATCATG+TGG - chr4_3:10111915-10111934 None:intergenic 30.0%
TCATACAAGAAGACTCAAAA+TGG - chr4_3:10112455-10112474 None:intergenic 30.0%
!! TTTTGAGTCTTCTTGTATGA+TGG + chr4_3:10112455-10112474 Msa0629240:three_prime_UTR 30.0%
TTTGAGTCTTCTTGTATGAT+GGG + chr4_3:10112456-10112475 Msa0629240:three_prime_UTR 30.0%
AAATGTGGAAAGTCTCTTTA+GGG + chr4_3:10112547-10112566 Msa0629240:three_prime_UTR 30.0%
AACAGAGATGAATGTGATGA+TGG - chr4_3:10109492-10109511 None:intergenic 35.0%
GATCAAGTATTCAACAAGGT+TGG + chr4_3:10109564-10109583 Msa0629240:CDS 35.0%
!! CGATTTTAAGTATCAGACCA+CGG - chr4_3:10109917-10109936 None:intergenic 35.0%
!! CGTGAACTTCTACTTTTGAA+AGG - chr4_3:10109952-10109971 None:intergenic 35.0%
GTACCAGTTCAACAAAAACA+AGG + chr4_3:10110011-10110030 Msa0629240:intron 35.0%
CAAGGAAAAATGAATACGTG+TGG + chr4_3:10110029-10110048 Msa0629240:intron 35.0%
TGTGGATGAGATATAGACAT+TGG + chr4_3:10110333-10110352 Msa0629240:intron 35.0%
AGTGATGCTGTATGAGAAAT+AGG + chr4_3:10110409-10110428 Msa0629240:intron 35.0%
GTTTGTAACAAAGCTAATGC+TGG - chr4_3:10110563-10110582 None:intergenic 35.0%
TCAAAACTGAACATGTGAGA+AGG - chr4_3:10110618-10110637 None:intergenic 35.0%
GACTGCATATCAAAAGAAGA+AGG - chr4_3:10110716-10110735 None:intergenic 35.0%
TACTTTGTTGACCAACCATT+TGG - chr4_3:10110765-10110784 None:intergenic 35.0%
! TGGTTGGTCAACAAAGTAAA+AGG + chr4_3:10110767-10110786 Msa0629240:CDS 35.0%
GAAAAAATTGGACATGAGAG+GGG - chr4_3:10111017-10111036 None:intergenic 35.0%
GGAAAAAATTGGACATGAGA+GGG - chr4_3:10111018-10111037 None:intergenic 35.0%
AGGAAAAAATTGGACATGAG+AGG - chr4_3:10111019-10111038 None:intergenic 35.0%
CTAACTCATCCCTACAAAAT+AGG - chr4_3:10111183-10111202 None:intergenic 35.0%
! CTATTTTGTAGGGATGAGTT+AGG + chr4_3:10111181-10111200 Msa0629240:intron 35.0%
TAATTACATGCAATGGGGAT+TGG - chr4_3:10111226-10111245 None:intergenic 35.0%
AACCATGTTTAGATGCTTTG+CGG + chr4_3:10111250-10111269 Msa0629240:intron 35.0%
TCGAAAGTCACCAATTACTA+AGG - chr4_3:10111294-10111313 None:intergenic 35.0%
! GTAATTGGTGACTTTCGAAA+CGG + chr4_3:10111296-10111315 Msa0629240:intron 35.0%
TATGTGCCCTAATCTTACAA+TGG + chr4_3:10111320-10111339 Msa0629240:intron 35.0%
GGAGATCCATTGTAAGATTA+GGG - chr4_3:10111329-10111348 None:intergenic 35.0%
TGGAGATCCATTGTAAGATT+AGG - chr4_3:10111330-10111349 None:intergenic 35.0%
TTTAGTACTTTGAACCATGG+AGG + chr4_3:10111383-10111402 Msa0629240:intron 35.0%
AACTTATAAACAGACCTCCA+TGG - chr4_3:10111400-10111419 None:intergenic 35.0%
AAATAAAGCAGAACCATTGG+TGG - chr4_3:10111719-10111738 None:intergenic 35.0%
GAGAAATAAAGCAGAACCAT+TGG - chr4_3:10111722-10111741 None:intergenic 35.0%
! ATTGCTTGAGGAAAACCTTT+TGG - chr4_3:10111767-10111786 None:intergenic 35.0%
GATTTCAAATCATGTGGCAA+AGG - chr4_3:10111909-10111928 None:intergenic 35.0%
TCCTTTAACAACTCTGGTAA+TGG - chr4_3:10112037-10112056 None:intergenic 35.0%
TCATACTCCTTTAACAACTC+TGG - chr4_3:10112043-10112062 None:intergenic 35.0%
! AAGGAGTATGATCTACCAAT+AGG + chr4_3:10112052-10112071 Msa0629240:CDS 35.0%
CTACGAATTTAACGAAGAGA+CGG + chr4_3:10112099-10112118 Msa0629240:CDS 35.0%
TACGAATTTAACGAAGAGAC+GGG + chr4_3:10112100-10112119 Msa0629240:CDS 35.0%
CATGAAGAAAACAAGAACCA+GGG + chr4_3:10112321-10112340 Msa0629240:CDS 35.0%
TTGAGTCTTCTTGTATGATG+GGG + chr4_3:10112457-10112476 Msa0629240:three_prime_UTR 35.0%
ATTTCTCAAATCACAACCCA+AGG - chr4_3:10112531-10112550 None:intergenic 35.0%
GAAATGTGGAAAGTCTCTTT+AGG + chr4_3:10112546-10112565 Msa0629240:three_prime_UTR 35.0%
TCAACAAGGTTGGATCCTAT+TGG + chr4_3:10109574-10109593 Msa0629240:CDS 40.0%
GGCTTTCTGATTGAACCAAT+AGG - chr4_3:10109592-10109611 None:intergenic 40.0%
AGCAAGGAGCTTAATTCTGT+CGG + chr4_3:10109612-10109631 Msa0629240:CDS 40.0%
! TTGTTGGTAGGCAGATTCTA+TGG + chr4_3:10109879-10109898 Msa0629240:intron 40.0%
!! TTTTAAGTATCAGACCACGG+TGG - chr4_3:10109914-10109933 None:intergenic 40.0%
TTGTCTAACCGATAACGATC+AGG + chr4_3:10110088-10110107 Msa0629240:intron 40.0%
ACCGTTAACTCTTACTTCAG+AGG + chr4_3:10110140-10110159 Msa0629240:intron 40.0%
!! GCCTCTGAAGTAAGAGTTAA+CGG - chr4_3:10110144-10110163 None:intergenic 40.0%
!!! TTTTAAGTACTGGTCCACTG+TGG + chr4_3:10110196-10110215 Msa0629240:intron 40.0%
TGGTAAATGCAACACCAACA+GGG - chr4_3:10110238-10110257 None:intergenic 40.0%
AATAAGTCATGACATCGGTG+AGG + chr4_3:10110275-10110294 Msa0629240:intron 40.0%
ATAAGTCATGACATCGGTGA+GGG + chr4_3:10110276-10110295 Msa0629240:intron 40.0%
AGATGATTCTGTTACGGTGA+GGG + chr4_3:10110383-10110402 Msa0629240:intron 40.0%
ATGTAGTTTGAGTGCGATGT+AGG + chr4_3:10110462-10110481 Msa0629240:intron 40.0%
GCTAATGCTGGATTATGACA+CGG - chr4_3:10110551-10110570 None:intergenic 40.0%
GGATCAAAATACTCGCAGTT+AGG + chr4_3:10110928-10110947 Msa0629240:intron 40.0%
! TTTTTCTGTGCATCAGCGTA+GGG + chr4_3:10110968-10110987 Msa0629240:intron 40.0%
TCAATGCGAGACTCAACAAA+GGG - chr4_3:10111104-10111123 None:intergenic 40.0%
TTCAATGCGAGACTCAACAA+AGG - chr4_3:10111105-10111124 None:intergenic 40.0%
! AACCGCAAAGCATCTAAACA+TGG - chr4_3:10111255-10111274 None:intergenic 40.0%
CTAAACCAGTTTGACACTAG+TGG + chr4_3:10111681-10111700 Msa0629240:intron 40.0%
TCATACCACTAGTGTCAAAC+TGG - chr4_3:10111689-10111708 None:intergenic 40.0%
ATGAACATCATGAAGGGGTT+AGG + chr4_3:10111791-10111810 Msa0629240:intron 40.0%
GGAGAGAATAAACAATGGAG+AGG - chr4_3:10111819-10111838 None:intergenic 40.0%
GCCATTACCAGAGTTGTTAA+AGG + chr4_3:10112033-10112052 Msa0629240:CDS 40.0%
TCACGAGGAAAGATTCCTAT+TGG - chr4_3:10112070-10112089 None:intergenic 40.0%
! GTTACTGGTTATCTGGAGAA+AGG + chr4_3:10112199-10112218 Msa0629240:CDS 40.0%
GCATGAAGAAAACAAGAACC+AGG + chr4_3:10112320-10112339 Msa0629240:CDS 40.0%
GCATATGATGTTACGAGAGA+TGG + chr4_3:10112346-10112365 Msa0629240:CDS 40.0%
!! GTATTTCAGGTACTGATCCT+TGG + chr4_3:10112504-10112523 Msa0629240:three_prime_UTR 40.0%
GGGTTGTGATTTGAGAAATG+TGG + chr4_3:10112532-10112551 Msa0629240:three_prime_UTR 40.0%
!! AAGTCTCTTTAGGGTGTGTT+TGG + chr4_3:10112556-10112575 Msa0629240:three_prime_UTR 40.0%
!! AGTCTCTTTAGGGTGTGTTT+GGG + chr4_3:10112557-10112576 Msa0629240:three_prime_UTR 40.0%
AAAAGTCCTTGCGAAGAAGC+AGG + chr4_3:10109448-10109467 Msa0629240:five_prime_UTR 45.0%
AAAGTCCTTGCGAAGAAGCA+GGG + chr4_3:10109449-10109468 Msa0629240:five_prime_UTR 45.0%
GTTCAATCAGAAAGCCAGCA+AGG + chr4_3:10109596-10109615 Msa0629240:CDS 45.0%
GACAGAATTAAGCTCCTTGC+TGG - chr4_3:10109613-10109632 None:intergenic 45.0%
GCGTGTTTCCAATTTCCATG+AGG - chr4_3:10109743-10109762 None:intergenic 45.0%
AGGCAGATTCTATGGTTACG+TGG + chr4_3:10109887-10109906 Msa0629240:intron 45.0%
GACAGTGACCTGATCGTTAT+CGG - chr4_3:10110099-10110118 None:intergenic 45.0%
! TCTTAGCCATGATGACGAGT+AGG + chr4_3:10110117-10110136 Msa0629240:intron 45.0%
TAAATGCAACACCAACAGGG+TGG - chr4_3:10110235-10110254 None:intergenic 45.0%
CTGGTAAATGCAACACCAAC+AGG - chr4_3:10110239-10110258 None:intergenic 45.0%
TAAGTCATGACATCGGTGAG+GGG + chr4_3:10110277-10110296 Msa0629240:intron 45.0%
GAGATGATTCTGTTACGGTG+AGG + chr4_3:10110382-10110401 Msa0629240:intron 45.0%
! TCACTGTCGAACAGTATCGA+AGG + chr4_3:10110734-10110753 Msa0629240:CDS 45.0%
! GTTTTTCTGTGCATCAGCGT+AGG + chr4_3:10110967-10110986 Msa0629240:intron 45.0%
ATGAGAGGGGTGAGAATACA+GGG - chr4_3:10111004-10111023 None:intergenic 45.0%
CGAGAGAAGACAGAAAGGTA+AGG - chr4_3:10111039-10111058 None:intergenic 45.0%
AGAGACGAGAGAAGACAGAA+AGG - chr4_3:10111044-10111063 None:intergenic 45.0%
TACATGCAATGGGGATTGGA+AGG - chr4_3:10111222-10111241 None:intergenic 45.0%
ATGGATCTCCACAGTTAGTG+TGG + chr4_3:10111339-10111358 Msa0629240:intron 45.0%
GTATGAAGCCAAACCACCAA+TGG + chr4_3:10111703-10111722 Msa0629240:intron 45.0%
! AAGCAGAACCATTGGTGGTT+TGG - chr4_3:10111714-10111733 None:intergenic 45.0%
!! TCGTAGTTTGTTGCATCACG+AGG - chr4_3:10112085-10112104 None:intergenic 45.0%
GCTTGAAGTCTTCATTCCTC+AGG + chr4_3:10112126-10112145 Msa0629240:CDS 45.0%
AGTGGTGAAGAAACGCAAGA+CGG - chr4_3:10112179-10112198 None:intergenic 45.0%
CGTTTCTTCACCACTGTTAC+TGG + chr4_3:10112184-10112203 Msa0629240:CDS 45.0%
! CACCACTGTTACTGGTTATC+TGG + chr4_3:10112192-10112211 Msa0629240:CDS 45.0%
CTCCAGATAACCAGTAACAG+TGG - chr4_3:10112197-10112216 None:intergenic 45.0%
AGGAAAGCTAGCAGACATAG+AGG + chr4_3:10112219-10112238 Msa0629240:CDS 45.0%
GGAAAGCTAGCAGACATAGA+GGG + chr4_3:10112220-10112239 Msa0629240:CDS 45.0%
! AGTGACAACCATTTTCTCCG+AGG + chr4_3:10112273-10112292 Msa0629240:CDS 45.0%
! GTGACAACCATTTTCTCCGA+GGG + chr4_3:10112274-10112293 Msa0629240:CDS 45.0%
CGTAACATCATATGCTTCCC+TGG - chr4_3:10112341-10112360 None:intergenic 45.0%
! AGTCTTCTTGTATGATGGGG+TGG + chr4_3:10112460-10112479 Msa0629240:three_prime_UTR 45.0%
AAATCACAACCCAAGGTCCA+AGG - chr4_3:10112524-10112543 None:intergenic 45.0%
! TTTAGGGTGTGTTTGGGAAG+AGG + chr4_3:10112563-10112582 Msa0629240:three_prime_UTR 45.0%
TTAGGGTGTGTTTGGGAAGA+GGG + chr4_3:10112564-10112583 Msa0629240:three_prime_UTR 45.0%
TGTGTTTGGGAAGAGGGTTT+AGG + chr4_3:10112570-10112589 Msa0629240:three_prime_UTR 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG + chr4_3:10112574-10112593 Msa0629240:three_prime_UTR 45.0%
AACGGTCCTACTCGTCATCA+TGG - chr4_3:10110126-10110145 None:intergenic 50.0%
GATTCTATGGTGGTCCACAG+TGG - chr4_3:10110213-10110232 None:intergenic 50.0%
! CAACAGGGTGGATTCTATGG+TGG - chr4_3:10110223-10110242 None:intergenic 50.0%
CACCATAGAATCCACCCTGT+TGG + chr4_3:10110221-10110240 Msa0629240:intron 50.0%
! CACCAACAGGGTGGATTCTA+TGG - chr4_3:10110226-10110245 None:intergenic 50.0%
TTAAGCAAGGGAAAGACGCG+AGG + chr4_3:10110500-10110519 Msa0629240:intron 50.0%
! CTGTCGAACAGTATCGAAGG+CGG + chr4_3:10110737-10110756 Msa0629240:CDS 50.0%
GTATCGAAGGCGGAACCAAA+TGG + chr4_3:10110747-10110766 Msa0629240:CDS 50.0%
!!! CTTTTCAAGTCCTGGACTCC+TGG + chr4_3:10110829-10110848 Msa0629240:intron 50.0%
GTTGCACAGGTTTCATAGCC+AGG - chr4_3:10110850-10110869 None:intergenic 50.0%
CATGAGAGGGGTGAGAATAC+AGG - chr4_3:10111005-10111024 None:intergenic 50.0%
TGCTCAGTCCACACTAACTG+TGG - chr4_3:10111350-10111369 None:intergenic 50.0%
ATTCCTCAGGTCTGCGAAGT+AGG + chr4_3:10112139-10112158 Msa0629240:CDS 50.0%
GGTCTGCGAAGTAGGCTATA+AGG + chr4_3:10112147-10112166 Msa0629240:CDS 50.0%
CTTCGATCCCTCGGAGAAAA+TGG - chr4_3:10112284-10112303 None:intergenic 50.0%
CACATAGAGCTTCGATCCCT+CGG - chr4_3:10112293-10112312 None:intergenic 50.0%
TCGAAGCTCTATGTGACTGC+TGG + chr4_3:10112298-10112317 Msa0629240:CDS 50.0%
!! AGGTACTGATCCTTGGACCT+TGG + chr4_3:10112511-10112530 Msa0629240:three_prime_UTR 50.0%
!! GGTACTGATCCTTGGACCTT+GGG + chr4_3:10112512-10112531 Msa0629240:three_prime_UTR 50.0%
GTTTGGGAAGAGGGTTTAGG+AGG + chr4_3:10112573-10112592 Msa0629240:three_prime_UTR 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG + chr4_3:10112575-10112594 Msa0629240:three_prime_UTR 50.0%
AAGAGGGTTTAGGAGGGGAA+GGG + chr4_3:10112580-10112599 Msa0629240:three_prime_UTR 50.0%
AGTTGCCCTGCTTCTTCGCA+AGG - chr4_3:10109457-10109476 None:intergenic 55.0%
TGCGAAGAAGCAGGGCAACT+CGG + chr4_3:10109457-10109476 Msa0629240:five_prime_UTR 55.0%
TATGGTTACGTGGTCCACCG+TGG + chr4_3:10109897-10109916 Msa0629240:intron 55.0%
TCCTCCTTGTCCTTGCAGCT+GGG + chr4_3:10109973-10109992 Msa0629240:intron 55.0%
AGCTGGGACGGTGACTTGAT+CGG + chr4_3:10109989-10110008 Msa0629240:intron 55.0%
GACATCGGTGAGGGGAAATG+TGG + chr4_3:10110285-10110304 Msa0629240:intron 55.0%
GACGCGAGGATCTGCAACTT+AGG + chr4_3:10110514-10110533 Msa0629240:intron 55.0%
CGAAGGCGGAACCAAATGGT+TGG + chr4_3:10110751-10110770 Msa0629240:CDS 55.0%
GGTTTCATAGCCAGGAGTCC+AGG - chr4_3:10110842-10110861 None:intergenic 55.0%
TAGCCTACTTCGCAGACCTG+AGG - chr4_3:10112145-10112164 None:intergenic 55.0%
GAAGAGGGTTTAGGAGGGGA+AGG + chr4_3:10112579-10112598 Msa0629240:three_prime_UTR 55.0%
GTCCTCCTTGTCCTTGCAGC+TGG + chr4_3:10109972-10109991 Msa0629240:intron 60.0%
TCCCAGCTGCAAGGACAAGG+AGG - chr4_3:10109977-10109996 None:intergenic 60.0%
CCTTGTCCTTGCAGCTGGGA+CGG + chr4_3:10109977-10109996 Msa0629240:intron 60.0%
AAGTCACCGTCCCAGCTGCA+AGG - chr4_3:10109986-10110005 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr4_3:10112583-10112602 Msa0629240:three_prime_UTR 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr4_3:10112584-10112603 Msa0629240:three_prime_UTR 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr4_3:10112585-10112604 Msa0629240:three_prime_UTR 60.0%
CCGTCCCAGCTGCAAGGACA+AGG - chr4_3:10109980-10109999 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr4_3:10112588-10112607 Msa0629240:three_prime_UTR 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr4_3:10112589-10112608 Msa0629240:three_prime_UTR 65.0%
AGGAGGGGAAGGGAGGGGAG+GGG + chr4_3:10112590-10112609 Msa0629240:three_prime_UTR 70.0%
AGGGGAAGGGAGGGGAGGGG+AGG + chr4_3:10112593-10112612 Msa0629240:three_prime_UTR 75.0%
GGGGAAGGGAGGGGAGGGGA+GGG + chr4_3:10112594-10112613 Msa0629240:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10109439 10112787 10109439 ID=Msa0629240;Name=Msa0629240
chr4_3 mRNA 10109439 10112787 10109439 ID=Msa0629240-mRNA-1;Parent=Msa0629240;Name=Msa0629240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=122|1|1|1|1|1|3|397|170
chr4_3 exon 10109439 10109647 10109439 ID=Msa0629240-mRNA-1:exon:3040;Parent=Msa0629240-mRNA-1
chr4_3 exon 10110734 10110788 10110734 ID=Msa0629240-mRNA-1:exon:3041;Parent=Msa0629240-mRNA-1
chr4_3 exon 10112020 10112787 10112020 ID=Msa0629240-mRNA-1:exon:3042;Parent=Msa0629240-mRNA-1
chr4_3 five_prime_UTR 10109439 10109560 10109439 ID=Msa0629240-mRNA-1:five_prime_utr;Parent=Msa0629240-mRNA-1
chr4_3 CDS 10109561 10109647 10109561 ID=Msa0629240-mRNA-1:cds;Parent=Msa0629240-mRNA-1
chr4_3 CDS 10110734 10110788 10110734 ID=Msa0629240-mRNA-1:cds;Parent=Msa0629240-mRNA-1
chr4_3 CDS 10112020 10112390 10112020 ID=Msa0629240-mRNA-1:cds;Parent=Msa0629240-mRNA-1
chr4_3 three_prime_UTR 10112391 10112787 10112391 ID=Msa0629240-mRNA-1:three_prime_utr;Parent=Msa0629240-mRNA-1
Gene Sequence

>Msa0629240

ATGGATCAAGTATTCAACAAGGTTGGATCCTATTGGTTCAATCAGAAAGCCAGCAAGGAGCTTAATTCTGTCGGTGATGAAATCAATTCACTGTCGAACAGTATCGAAGGCGGAACCAAATGGTTGGTCAACAAAGTAAAAGGAAAAATGCAGAAGCCATTACCAGAGTTGTTAAAGGAGTATGATCTACCAATAGGAATCTTTCCTCGTGATGCAACAAACTACGAATTTAACGAAGAGACGGGAAAGCTTGAAGTCTTCATTCCTCAGGTCTGCGAAGTAGGCTATAAGGATTCATCCGTCTTGCGTTTCTTCACCACTGTTACTGGTTATCTGGAGAAAGGAAAGCTAGCAGACATAGAGGGAATGAAGACAAAAGTTATTATCTGGGTAAAAGTGACAACCATTTTCTCCGAGGGATCGAAGCTCTATGTGACTGCTGGCATGAAGAAAACAAGAACCAGGGAAGCATATGATGTTACGAGAGATGGCGTACCTGTAGATAAGTTCTAA

Protein sequence

>Msa0629240

MDQVFNKVGSYWFNQKASKELNSVGDEINSLSNSIEGGTKWLVNKVKGKMQKPLPELLKEYDLPIGIFPRDATNYEFNEETGKLEVFIPQVCEVGYKDSSVLRFFTTVTGYLEKGKLADIEGMKTKVIIWVKVTTIFSEGSKLYVTAGMKKTRTREAYDVTRDGVPVDKF*