Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634300 | RHN59424.1 | 90.051 | 583 | 29 | 2 | 1 | 583 | 66 | 619 | 0.0 | 965 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634300 | sp|F4ISY0|Y2837_ARATH | 44.103 | 585 | 227 | 17 | 2 | 569 | 3 | 504 | 7.68e-110 | 342 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634300 | A0A396I5C4 | 90.051 | 583 | 29 | 2 | 1 | 583 | 66 | 619 | 0.0 | 965 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0626490 | Msa0634300 | 0.801641 | 8.179396e-49 | -8.615850e-47 |
Msa0634300 | Msa0643300 | 0.816401 | 5.637775e-52 | -8.615850e-47 |
Msa0634300 | Msa0664600 | 0.800173 | 1.632177e-48 | -8.615850e-47 |
Msa0634300 | Msa0683570 | 0.819761 | 9.800939e-53 | -8.615850e-47 |
Msa0634300 | Msa0724910 | 0.801514 | 8.688763e-49 | -8.615850e-47 |
Msa0634300 | Msa0770720 | 0.802933 | 4.435035e-49 | -8.615850e-47 |
Msa0634300 | Msa0861510 | 0.814094 | 1.835024e-51 | -8.615850e-47 |
Msa0634300 | Msa0861530 | 0.805788 | 1.127217e-49 | -8.615850e-47 |
Msa0634300 | Msa0861600 | 0.814764 | 1.304513e-51 | -8.615850e-47 |
Msa0634300 | Msa1045140 | 0.803783 | 2.956439e-49 | -8.615850e-47 |
Msa0634300 | Msa1157870 | 0.806125 | 9.575915e-50 | -8.615850e-47 |
Msa0634300 | Msa1182860 | 0.809123 | 2.210173e-50 | -8.615850e-47 |
Msa0634300 | Msa1276660 | 0.808419 | 3.126328e-50 | -8.615850e-47 |
Msa0634300 | Msa1369150 | 0.825350 | 4.918565e-54 | -8.615850e-47 |
Msa0634300 | Msa1422420 | 0.801232 | 9.923797e-49 | -8.615850e-47 |
Msa0136650 | Msa0634300 | 0.815982 | 6.991346e-52 | -8.615850e-47 |
Msa0174450 | Msa0634300 | 0.802941 | 4.417823e-49 | -8.615850e-47 |
Msa0378720 | Msa0634300 | 0.809213 | 2.115030e-50 | -8.615850e-47 |
Msa0422850 | Msa0634300 | 0.814188 | 1.749467e-51 | -8.615850e-47 |
Msa0422930 | Msa0634300 | 0.817156 | 3.815742e-52 | -8.615850e-47 |
Msa0430260 | Msa0634300 | 0.805912 | 1.061436e-49 | -8.615850e-47 |
Msa0450720 | Msa0634300 | 0.804770 | 1.842066e-49 | -8.615850e-47 |
Msa0263080 | Msa0634300 | 0.809016 | 2.330441e-50 | -8.615850e-47 |
Msa0292400 | Msa0634300 | 0.852503 | 4.422633e-61 | -8.615850e-47 |
Msa0300690 | Msa0634300 | 0.818775 | 1.644096e-52 | -8.615850e-47 |
Msa0594310 | Msa0634300 | 0.926643 | 3.535263e-91 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634300 | MtrunA17_Chr4g0013151 | 90.051 | 583 | 29 | 2 | 1 | 583 | 66 | 619 | 0.0 | 965 |
Msa0634300 | MtrunA17_Chr7g0244501 | 61.977 | 597 | 161 | 14 | 13 | 583 | 14 | 570 | 0.0 | 632 |
Msa0634300 | MtrunA17_Chr3g0114551 | 36.495 | 622 | 293 | 13 | 13 | 571 | 14 | 596 | 9.23e-81 | 265 |
Msa0634300 | MtrunA17_Chr5g0438111 | 35.911 | 582 | 283 | 16 | 18 | 576 | 20 | 534 | 1.16e-65 | 223 |
Msa0634300 | MtrunA17_Chr3g0133891 | 31.143 | 350 | 226 | 4 | 113 | 452 | 512 | 856 | 1.11e-32 | 134 |
Msa0634300 | MtrunA17_Chr1g0153431 | 32.453 | 265 | 173 | 2 | 193 | 452 | 575 | 838 | 4.39e-26 | 113 |
Msa0634300 | MtrunA17_Chr8g0369191 | 30.822 | 292 | 179 | 4 | 193 | 462 | 284 | 574 | 2.83e-18 | 88.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0634300 | AT2G38370.2 | 44.103 | 585 | 227 | 17 | 2 | 569 | 20 | 521 | 6.48e-111 | 342 |
Msa0634300 | AT2G38370.1 | 44.103 | 585 | 227 | 17 | 2 | 569 | 3 | 504 | 7.81e-111 | 342 |
Msa0634300 | AT2G40480.1 | 36.317 | 581 | 256 | 17 | 5 | 576 | 40 | 515 | 1.00e-68 | 231 |
Msa0634300 | AT3G51720.1 | 34.111 | 557 | 188 | 14 | 18 | 569 | 6 | 388 | 8.32e-65 | 218 |
Msa0634300 | AT3G56270.1 | 32.720 | 489 | 222 | 12 | 16 | 501 | 36 | 420 | 5.01e-40 | 152 |
Msa0634300 | AT2G26570.1 | 33.133 | 332 | 208 | 5 | 125 | 452 | 408 | 729 | 1.17e-33 | 137 |
Msa0634300 | AT2G26570.2 | 33.133 | 332 | 208 | 5 | 125 | 452 | 408 | 729 | 1.17e-33 | 137 |
Msa0634300 | AT4G33390.1 | 35.897 | 273 | 170 | 2 | 193 | 461 | 459 | 730 | 4.18e-27 | 117 |
Msa0634300 | AT5G42880.1 | 30.970 | 268 | 156 | 4 | 193 | 453 | 423 | 668 | 6.34e-21 | 97.8 |
Msa0634300 | AT1G45545.1 | 29.572 | 257 | 173 | 4 | 201 | 451 | 424 | 678 | 5.53e-17 | 85.1 |
Msa0634300 | AT1G45545.2 | 29.572 | 257 | 173 | 4 | 201 | 451 | 425 | 679 | 5.54e-17 | 85.1 |
Find 112 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCGGTTATTTGACATAAA+TGG | 0.131409 | 4_3:+21253530 | Msa0634300:CDS |
CTAGATTCTTGTTTGTTATT+TGG | 0.134413 | 4_3:+21253975 | Msa0634300:three_prime_UTR |
GGCAGAACATTTCAAGAAAA+TGG | 0.171368 | 4_3:+21252983 | Msa0634300:CDS |
TAGATTCTTGTTTGTTATTT+GGG | 0.206714 | 4_3:+21253976 | Msa0634300:three_prime_UTR |
GGTTCGGTGGTGTTGGTTAT+TGG | 0.246121 | 4_3:+21251326 | Msa0634300:CDS |
CGAAGCAAATGTATCGAAAA+TGG | 0.273101 | 4_3:+21253304 | Msa0634300:CDS |
TCTCTGGCATCATCAGTTTC+CGG | 0.279858 | 4_3:-21253622 | None:intergenic |
TTGAAGAGGCTTTAAGAAAA+TGG | 0.291438 | 4_3:+21253435 | Msa0634300:CDS |
TCTGCTAAGAGAAAGAAATT+TGG | 0.309514 | 4_3:+21253785 | Msa0634300:CDS |
AGAGCTTGATGCTGGAAAAT+TGG | 0.325183 | 4_3:+21252419 | Msa0634300:CDS |
TGTTGTGTTGTGAAGTGTTT+AGG | 0.329213 | 4_3:-21251138 | None:intergenic |
ACAACTCTTGGCCAGACTTC+TGG | 0.332192 | 4_3:-21251828 | None:intergenic |
AAGAAGACAAGAAAATAAAA+AGG | 0.352466 | 4_3:-21251167 | None:intergenic |
AAGAGAAAGAAATTTGGTTT+TGG | 0.353841 | 4_3:+21253791 | Msa0634300:CDS |
CCTGCAGTTTAAGTCTTGTT+TGG | 0.360526 | 4_3:-21252881 | None:intergenic |
CGGTTCACCACCACCATATC+AGG | 0.360784 | 4_3:-21251217 | None:intergenic |
TTCAATGGAAACTCCTGATA+TGG | 0.361446 | 4_3:+21251204 | Msa0634300:exon |
GAAGGCTCTTGAAGAAGCTT+TGG | 0.361979 | 4_3:+21253376 | Msa0634300:CDS |
CTCGGTTATTTGACATAAAT+GGG | 0.367655 | 4_3:+21253531 | Msa0634300:CDS |
TAAACCTGGATTCGCCGAAT+TGG | 0.369316 | 4_3:-21252673 | None:intergenic |
TTGAAGCTCTTTCGTAATAT+CGG | 0.374582 | 4_3:-21252946 | None:intergenic |
CTCGGCAAGTGCAGCTGCTT+CGG | 0.385931 | 4_3:-21253129 | None:intergenic |
GTGTTTACCCTCTAGTTCCT+GGG | 0.386687 | 4_3:+21251775 | Msa0634300:intron |
TGCCTATCAAATTCAAAAGA+TGG | 0.395264 | 4_3:-21253731 | None:intergenic |
GGAAGTAGATTATAGTAATC+TGG | 0.399737 | 4_3:+21251798 | Msa0634300:CDS |
GGAGGAACAAGCAGTGGAAT+TGG | 0.401433 | 4_3:+21252440 | Msa0634300:CDS |
AGTCGGCTTTAGAACTGGTT+TGG | 0.412171 | 4_3:-21253576 | None:intergenic |
AGCAGCAACTAATCTAAATT+CGG | 0.412648 | 4_3:-21253078 | None:intergenic |
CTGGAGTTCGGCCAGAAGTC+TGG | 0.417320 | 4_3:+21251817 | Msa0634300:CDS |
CCTTCGAACCCGGTTCAATC+CGG | 0.418671 | 4_3:-21251237 | None:intergenic |
GGTGGTGAACCGGATTGAAC+CGG | 0.421354 | 4_3:+21251228 | Msa0634300:CDS |
CCTTCCAATTCGGCGAATCC+AGG | 0.426962 | 4_3:+21252669 | Msa0634300:CDS |
ATTCTGAGTTAAACTCTCTC+TGG | 0.432246 | 4_3:-21252823 | None:intergenic |
CAGCGATATCGTTTGTAGTT+CGG | 0.432690 | 4_3:-21252734 | None:intergenic |
AGAATAAAACGAATTACATA+TGG | 0.437327 | 4_3:-21254111 | None:intergenic |
CTATTATTATGATTATGAAC+AGG | 0.443762 | 4_3:-21251352 | None:intergenic |
AAAGAAGCTGTTACTCGGTT+CGG | 0.446194 | 4_3:+21251310 | Msa0634300:CDS |
GATAGAGTCGGCTTTAGAAC+TGG | 0.446529 | 4_3:-21253581 | None:intergenic |
GCAGAACATTTCAAGAAAAT+GGG | 0.446538 | 4_3:+21252984 | Msa0634300:CDS |
GTTGAATTTATGTGAAGCTA+AGG | 0.460946 | 4_3:+21252596 | Msa0634300:CDS |
ACGAAAGAATCTCGATGAAA+AGG | 0.462368 | 4_3:+21253666 | Msa0634300:CDS |
AAGAGCTTATCGTTAAAGAA+AGG | 0.463956 | 4_3:+21252466 | Msa0634300:CDS |
CATCACCTCAAGTTCAAAGT+TGG | 0.465116 | 4_3:-21253857 | None:intergenic |
CTGATATGGTGGTGGTGAAC+CGG | 0.466041 | 4_3:+21251218 | Msa0634300:CDS |
ATCCCACCTTCAAACTTCTC+TGG | 0.472004 | 4_3:-21253638 | None:intergenic |
GTTACTCGGTTCGGTGGTGT+TGG | 0.473117 | 4_3:+21251319 | Msa0634300:CDS |
TTCTACGTGTGAACAACTCT+TGG | 0.475377 | 4_3:-21251840 | None:intergenic |
AGAGTAGAGGCTGCAAATAG+AGG | 0.481776 | 4_3:+21253401 | Msa0634300:CDS |
AAACCGTTCTCCTTCGAACC+CGG | 0.483931 | 4_3:-21251247 | None:intergenic |
GATTATAGTAATCTGGAGTT+CGG | 0.487372 | 4_3:+21251805 | Msa0634300:CDS |
AGGGAAGTTAGTAGTTGAAG+AGG | 0.491762 | 4_3:+21253421 | Msa0634300:CDS |
ACAATTGTATAACTCTTGTA+AGG | 0.495615 | 4_3:+21254074 | Msa0634300:three_prime_UTR |
TATTAACCTCATTATTCCTC+AGG | 0.502714 | 4_3:+21251381 | Msa0634300:CDS |
AGTTCCCTTAAAATTAAACC+TGG | 0.508559 | 4_3:-21252687 | None:intergenic |
AACACAGAAGAGCTTGATGC+TGG | 0.508566 | 4_3:+21252411 | Msa0634300:CDS |
GATGAAAAGGAAAGTGTCGT+TGG | 0.508711 | 4_3:+21253679 | Msa0634300:CDS |
TAGTCGTGTTCCTTCCAATT+CGG | 0.511368 | 4_3:+21252659 | Msa0634300:CDS |
CCGGATTGAACCGGGTTCGA+AGG | 0.514162 | 4_3:+21251237 | Msa0634300:CDS |
AGAGCTTATCGTTAAAGAAA+GGG | 0.516851 | 4_3:+21252467 | Msa0634300:CDS |
CGCTGATGTTCGAGTTTCTG+TGG | 0.525095 | 4_3:+21252752 | Msa0634300:CDS |
CTGTTAAAGAAGCTGTTACT+CGG | 0.535629 | 4_3:+21251305 | Msa0634300:CDS |
GGCAAGTGCAGCTGCTTCGG+CGG | 0.535980 | 4_3:-21253126 | None:intergenic |
ATGAAAAGGAAAGTGTCGTT+GGG | 0.538173 | 4_3:+21253680 | Msa0634300:CDS |
AGCTTCTTCGATAGTGAGAA+GGG | 0.538244 | 4_3:-21253508 | None:intergenic |
TTTCTTGAAATGTTCTGCCT+CGG | 0.538325 | 4_3:-21252979 | None:intergenic |
CGATAGGTCAAATATTGAGC+CGG | 0.541111 | 4_3:+21253603 | Msa0634300:CDS |
TATTAGCTTAATTCTTGTCA+AGG | 0.543213 | 4_3:+21254139 | Msa0634300:three_prime_UTR |
AAGAGTTGGAAAGTACCAAA+AGG | 0.544666 | 4_3:+21252508 | Msa0634300:CDS |
TGTTTACCCTCTAGTTCCTG+GGG | 0.544676 | 4_3:+21251776 | Msa0634300:intron |
GCTTGATGCTGGAAAATTGG+AGG | 0.546478 | 4_3:+21252422 | Msa0634300:CDS |
AGAAGCCAACTTTGAACTTG+AGG | 0.546691 | 4_3:+21253852 | Msa0634300:CDS |
GGCGATCCGAGGGTAACAAA+AGG | 0.547667 | 4_3:+21253456 | Msa0634300:CDS |
GAGTAGAGGCTGCAAATAGA+GGG | 0.556599 | 4_3:+21253402 | Msa0634300:CDS |
GCTTCTTTAACAGACTCAAA+CGG | 0.556975 | 4_3:-21251295 | None:intergenic |
AAAGCGTTATCTTATTATGA+CGG | 0.559732 | 4_3:+21253155 | Msa0634300:CDS |
GTGTCGTTGGGTCAGATGCT+TGG | 0.562470 | 4_3:+21253692 | Msa0634300:CDS |
TAGAGCATTATACTCTTCAA+AGG | 0.563624 | 4_3:-21253213 | None:intergenic |
AGCTCTTTCGTAATATCGGA+AGG | 0.563753 | 4_3:-21252942 | None:intergenic |
CGAAGTTAAAACAAGCAAGA+AGG | 0.565482 | 4_3:+21253358 | Msa0634300:CDS |
GAGCTTCTTCGATAGTGAGA+AGG | 0.567321 | 4_3:-21253509 | None:intergenic |
CCTGGATTCGCCGAATTGGA+AGG | 0.568328 | 4_3:-21252669 | None:intergenic |
TAAATACCTGAGGAATAATG+AGG | 0.573109 | 4_3:-21251387 | None:intergenic |
AGAAGCTTTGGAAAGAGTAG+AGG | 0.581826 | 4_3:+21253388 | Msa0634300:CDS |
GAACCGGGTTCGAAGGAGAA+CGG | 0.591915 | 4_3:+21251244 | Msa0634300:CDS |
GTGGTGAACCGGATTGAACC+GGG | 0.592369 | 4_3:+21251229 | Msa0634300:CDS |
GTATTGTGATTGAATTTGCT+AGG | 0.594210 | 4_3:+21253952 | Msa0634300:three_prime_UTR |
CTCACTATCGAAGAAGCTCT+CGG | 0.599628 | 4_3:+21253513 | Msa0634300:CDS |
ATGCCAGAGAAGTTTGAAGG+TGG | 0.600167 | 4_3:+21253635 | Msa0634300:CDS |
ATTTGACCTATCGATAGAGT+CGG | 0.604595 | 4_3:-21253593 | None:intergenic |
CCAAACAAGACTTAAACTGC+AGG | 0.604751 | 4_3:+21252881 | Msa0634300:CDS |
GACTGTGTGCAAAACTGTGA+TGG | 0.605971 | 4_3:+21253179 | Msa0634300:CDS |
CTAAAGCCGACTCTATCGAT+AGG | 0.608619 | 4_3:+21253587 | Msa0634300:CDS |
AAAATTGGAGGAACAAGCAG+TGG | 0.610904 | 4_3:+21252434 | Msa0634300:CDS |
AAGTGAAAGTGAAAGTGTAA+CGG | 0.616017 | 4_3:-21251107 | None:intergenic |
TTTAAGAAAATGGCGATCCG+AGG | 0.618775 | 4_3:+21253445 | Msa0634300:CDS |
ATGATGCCAGAGAAGTTTGA+AGG | 0.619171 | 4_3:+21253632 | Msa0634300:CDS |
GAAGCTGTTACTCGGTTCGG+TGG | 0.622084 | 4_3:+21251313 | Msa0634300:CDS |
TTAAGAAAATGGCGATCCGA+GGG | 0.633233 | 4_3:+21253446 | Msa0634300:CDS |
TCTAACATGCAAAGCTCGAG+AGG | 0.633623 | 4_3:+21253232 | Msa0634300:CDS |
CACACGTAGAAATTCAACTC+GGG | 0.639397 | 4_3:+21251852 | Msa0634300:CDS |
AACAAGACTTAAACTGCAGG+TGG | 0.640787 | 4_3:+21252884 | Msa0634300:CDS |
TGGAAGGAACACGACTACCA+TGG | 0.644594 | 4_3:-21252653 | None:intergenic |
TCACACGTAGAAATTCAACT+CGG | 0.645415 | 4_3:+21251851 | Msa0634300:CDS |
GGAAACTCCTGATATGGTGG+TGG | 0.647078 | 4_3:+21251210 | Msa0634300:CDS |
GATGAAGAAAAGGAAAACCA+TGG | 0.649184 | 4_3:+21252636 | Msa0634300:CDS |
ACTCAACAAGAAACTTCAGA+AGG | 0.651200 | 4_3:+21252779 | Msa0634300:CDS |
AAAGAAGCTGAAATTGAATG+TGG | 0.654834 | 4_3:+21252909 | Msa0634300:CDS |
GTTTACCCTCTAGTTCCTGG+GGG | 0.665655 | 4_3:+21251777 | Msa0634300:intron |
GAAGGAGAACGGTTTAAGAG+CGG | 0.672078 | 4_3:+21251255 | Msa0634300:CDS |
GCTTCAACGATTGAGTTCCG+AGG | 0.676528 | 4_3:+21252962 | Msa0634300:CDS |
AATGGAAACTCCTGATATGG+TGG | 0.681888 | 4_3:+21251207 | Msa0634300:exon |
TGCCAGAGAAGTTTGAAGGT+GGG | 0.696821 | 4_3:+21253636 | Msa0634300:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGTATTTTTCTAATTTT+AGG | + | chr4_3:21251567-21251586 | Msa0634300:intron | 10.0% |
!!! | TTTGTATTTTTCTAATTTTA+GGG | + | chr4_3:21251568-21251587 | Msa0634300:intron | 10.0% |
!! | ATACATTCATTGAAAAAATA+GGG | - | chr4_3:21252122-21252141 | None:intergenic | 15.0% |
!!! | ATGAACATAGTTTTAAATTA+CGG | - | chr4_3:21252242-21252261 | None:intergenic | 15.0% |
!!! | TAATTTAAAACTATGTTCAT+AGG | + | chr4_3:21252242-21252261 | Msa0634300:intron | 15.0% |
!!! | AAAACCTTATGTTTTTTTTT+TGG | + | chr4_3:21252269-21252288 | Msa0634300:intron | 15.0% |
!! | AAATCCAAAAAAAAAACATA+AGG | - | chr4_3:21252276-21252295 | None:intergenic | 15.0% |
!! | AAGAAGACAAGAAAATAAAA+AGG | - | chr4_3:21251170-21251189 | None:intergenic | 20.0% |
!! | CTATTATTATGATTATGAAC+AGG | - | chr4_3:21251355-21251374 | None:intergenic | 20.0% |
!! | AACATAAAAATAAATACCTG+AGG | - | chr4_3:21251400-21251419 | None:intergenic | 20.0% |
!! | TTCTACAAAAATGTAAACTT+TGG | - | chr4_3:21251474-21251493 | None:intergenic | 20.0% |
!!! | TTTTCTAACTAAGACTTAAT+TGG | - | chr4_3:21251916-21251935 | None:intergenic | 20.0% |
!! | CATACATTCATTGAAAAAAT+AGG | - | chr4_3:21252123-21252142 | None:intergenic | 20.0% |
!!! | GAAAATGGATGTTTTAAAAA+GGG | + | chr4_3:21253319-21253338 | Msa0634300:CDS | 20.0% |
!!! | TAGATTCTTGTTTGTTATTT+GGG | + | chr4_3:21253976-21253995 | Msa0634300:three_prime_UTR | 20.0% |
!! | AGAATAAAACGAATTACATA+TGG | - | chr4_3:21254114-21254133 | None:intergenic | 20.0% |
!!! | TTTTTTCACTACTCTTTCAA+TGG | + | chr4_3:21251189-21251208 | Msa0634300:exon | 25.0% |
! | TATGAATTATGAATGCTCTT+TGG | + | chr4_3:21251936-21251955 | Msa0634300:intron | 25.0% |
!! | TTTTACCATGATTATTACAG+TGG | + | chr4_3:21252094-21252113 | Msa0634300:intron | 25.0% |
! | CAACAATATAAACATCTTAG+AGG | - | chr4_3:21252215-21252234 | None:intergenic | 25.0% |
!! | TTTTGGATTTCATACGTTTT+TGG | + | chr4_3:21252286-21252305 | Msa0634300:intron | 25.0% |
!! | TTTGGATTTCATACGTTTTT+GGG | + | chr4_3:21252287-21252306 | Msa0634300:intron | 25.0% |
! | GAAAAAAGAAGATGAAGAAA+AGG | + | chr4_3:21252626-21252645 | Msa0634300:CDS | 25.0% |
!!! | GAATCCAGGTTTAATTTTAA+GGG | + | chr4_3:21252683-21252702 | Msa0634300:CDS | 25.0% |
! | TTCAAAAATAACTTCACTAG+AGG | + | chr4_3:21252848-21252867 | Msa0634300:CDS | 25.0% |
!! | ATAAGATAACGCTTTTATCT+CGG | - | chr4_3:21253150-21253169 | None:intergenic | 25.0% |
!! | AAAGCGTTATCTTATTATGA+CGG | + | chr4_3:21253155-21253174 | Msa0634300:CDS | 25.0% |
!!! | CGAAAATGGATGTTTTAAAA+AGG | + | chr4_3:21253318-21253337 | Msa0634300:CDS | 25.0% |
!! | ATCCATCTTTTGAATTTGAT+AGG | + | chr4_3:21253729-21253748 | Msa0634300:CDS | 25.0% |
!!! | AAGAGAAAGAAATTTGGTTT+TGG | + | chr4_3:21253791-21253810 | Msa0634300:CDS | 25.0% |
! | CTGATAAGATTACAAAAATG+AGG | + | chr4_3:21253920-21253939 | Msa0634300:three_prime_UTR | 25.0% |
! | TACAAAAATGAGGATCTAAA+TGG | + | chr4_3:21253930-21253949 | Msa0634300:three_prime_UTR | 25.0% |
!!! | CTAGATTCTTGTTTGTTATT+TGG | + | chr4_3:21253975-21253994 | Msa0634300:three_prime_UTR | 25.0% |
! | ACAATTGTATAACTCTTGTA+AGG | + | chr4_3:21254074-21254093 | Msa0634300:three_prime_UTR | 25.0% |
!! | TATTAGCTTAATTCTTGTCA+AGG | + | chr4_3:21254139-21254158 | Msa0634300:three_prime_UTR | 25.0% |
! | AAGTGAAAGTGAAAGTGTAA+CGG | - | chr4_3:21251110-21251129 | None:intergenic | 30.0% |
TATTAACCTCATTATTCCTC+AGG | + | chr4_3:21251381-21251400 | Msa0634300:CDS | 30.0% | |
TAAATACCTGAGGAATAATG+AGG | - | chr4_3:21251390-21251409 | None:intergenic | 30.0% | |
TTGGTGAATGTTTGTGATTT+AGG | + | chr4_3:21251533-21251552 | Msa0634300:intron | 30.0% | |
TGGTGAATGTTTGTGATTTA+GGG | + | chr4_3:21251534-21251553 | Msa0634300:intron | 30.0% | |
!! | TTTCTAATTTTAGGGAGAGT+TGG | + | chr4_3:21251576-21251595 | Msa0634300:intron | 30.0% |
GGAAGTAGATTATAGTAATC+TGG | + | chr4_3:21251798-21251817 | Msa0634300:CDS | 30.0% | |
! | GATTATAGTAATCTGGAGTT+CGG | + | chr4_3:21251805-21251824 | Msa0634300:CDS | 30.0% |
AATTGCAGTCAAAATGTGAT+CGG | + | chr4_3:21252161-21252180 | Msa0634300:intron | 30.0% | |
! | TTTTCACAAAACCAAAACTG+CGG | - | chr4_3:21252192-21252211 | None:intergenic | 30.0% |
! | TTGGATTTCATACGTTTTTG+GGG | + | chr4_3:21252288-21252307 | Msa0634300:intron | 30.0% |
!!! | TTTTGGGGGTATTTTCTTTT+TGG | + | chr4_3:21252303-21252322 | Msa0634300:intron | 30.0% |
AAGAGCTTATCGTTAAAGAA+AGG | + | chr4_3:21252466-21252485 | Msa0634300:CDS | 30.0% | |
AGAGCTTATCGTTAAAGAAA+GGG | + | chr4_3:21252467-21252486 | Msa0634300:CDS | 30.0% | |
!!! | TCTCGATGTTTTAAAAGAGT+TGG | + | chr4_3:21252494-21252513 | Msa0634300:CDS | 30.0% |
GTTGAATTTATGTGAAGCTA+AGG | + | chr4_3:21252596-21252615 | Msa0634300:CDS | 30.0% | |
!! | CGAATCCAGGTTTAATTTTA+AGG | + | chr4_3:21252682-21252701 | Msa0634300:CDS | 30.0% |
AGTTCCCTTAAAATTAAACC+TGG | - | chr4_3:21252690-21252709 | None:intergenic | 30.0% | |
AAAGAAGCTGAAATTGAATG+TGG | + | chr4_3:21252909-21252928 | Msa0634300:CDS | 30.0% | |
TTGAAGCTCTTTCGTAATAT+CGG | - | chr4_3:21252949-21252968 | None:intergenic | 30.0% | |
GCAGAACATTTCAAGAAAAT+GGG | + | chr4_3:21252984-21253003 | Msa0634300:CDS | 30.0% | |
AGCAGCAACTAATCTAAATT+CGG | - | chr4_3:21253081-21253100 | None:intergenic | 30.0% | |
! | TAGAGCATTATACTCTTCAA+AGG | - | chr4_3:21253216-21253235 | None:intergenic | 30.0% |
!! | TTGAAGAGGCTTTAAGAAAA+TGG | + | chr4_3:21253435-21253454 | Msa0634300:CDS | 30.0% |
TCTCGGTTATTTGACATAAA+TGG | + | chr4_3:21253530-21253549 | Msa0634300:CDS | 30.0% | |
CTCGGTTATTTGACATAAAT+GGG | + | chr4_3:21253531-21253550 | Msa0634300:CDS | 30.0% | |
TGCCTATCAAATTCAAAAGA+TGG | - | chr4_3:21253734-21253753 | None:intergenic | 30.0% | |
TCTGCTAAGAGAAAGAAATT+TGG | + | chr4_3:21253785-21253804 | Msa0634300:CDS | 30.0% | |
! | GTATTGTGATTGAATTTGCT+AGG | + | chr4_3:21253952-21253971 | Msa0634300:three_prime_UTR | 30.0% |
! | TTGCTGTACTATTTTGTAGA+GGG | + | chr4_3:21254040-21254059 | Msa0634300:three_prime_UTR | 30.0% |
! | TGTTGTGTTGTGAAGTGTTT+AGG | - | chr4_3:21251141-21251160 | None:intergenic | 35.0% |
TTCAATGGAAACTCCTGATA+TGG | + | chr4_3:21251204-21251223 | Msa0634300:exon | 35.0% | |
GCTTCTTTAACAGACTCAAA+CGG | - | chr4_3:21251298-21251317 | None:intergenic | 35.0% | |
CTGTTAAAGAAGCTGTTACT+CGG | + | chr4_3:21251305-21251324 | Msa0634300:CDS | 35.0% | |
TCACACGTAGAAATTCAACT+CGG | + | chr4_3:21251851-21251870 | Msa0634300:CDS | 35.0% | |
! | ACATCAAAGGAGTTCTAACT+AGG | - | chr4_3:21251966-21251985 | None:intergenic | 35.0% |
TTGACTGCAATTTCGAATCA+CGG | - | chr4_3:21252153-21252172 | None:intergenic | 35.0% | |
!! | TGGATTTCATACGTTTTTGG+GGG | + | chr4_3:21252289-21252308 | Msa0634300:intron | 35.0% |
!! | AAGAGTTGGAAAGTACCAAA+AGG | + | chr4_3:21252508-21252527 | Msa0634300:CDS | 35.0% |
! | CAGATTTTCAACAAGCCTTT+TGG | - | chr4_3:21252526-21252545 | None:intergenic | 35.0% |
GATGAAGAAAAGGAAAACCA+TGG | + | chr4_3:21252636-21252655 | Msa0634300:CDS | 35.0% | |
ACTCAACAAGAAACTTCAGA+AGG | + | chr4_3:21252779-21252798 | Msa0634300:CDS | 35.0% | |
ATTCTGAGTTAAACTCTCTC+TGG | - | chr4_3:21252826-21252845 | None:intergenic | 35.0% | |
TTTCTTGAAATGTTCTGCCT+CGG | - | chr4_3:21252982-21253001 | None:intergenic | 35.0% | |
GGCAGAACATTTCAAGAAAA+TGG | + | chr4_3:21252983-21253002 | Msa0634300:CDS | 35.0% | |
AAAAATGAAGGAAGCTGCTA+GGG | + | chr4_3:21253103-21253122 | Msa0634300:CDS | 35.0% | |
CGAAGCAAATGTATCGAAAA+TGG | + | chr4_3:21253304-21253323 | Msa0634300:CDS | 35.0% | |
!!! | GGATGTTTTAAAAAGGGTTG+AGG | + | chr4_3:21253325-21253344 | Msa0634300:CDS | 35.0% |
CGAAGTTAAAACAAGCAAGA+AGG | + | chr4_3:21253358-21253377 | Msa0634300:CDS | 35.0% | |
ATTTGACCTATCGATAGAGT+CGG | - | chr4_3:21253596-21253615 | None:intergenic | 35.0% | |
ACGAAAGAATCTCGATGAAA+AGG | + | chr4_3:21253666-21253685 | Msa0634300:CDS | 35.0% | |
!! | ATGAAAAGGAAAGTGTCGTT+GGG | + | chr4_3:21253680-21253699 | Msa0634300:CDS | 35.0% |
!! | CTTGCTGTACTATTTTGTAG+AGG | + | chr4_3:21254039-21254058 | Msa0634300:three_prime_UTR | 35.0% |
AATGGAAACTCCTGATATGG+TGG | + | chr4_3:21251207-21251226 | Msa0634300:exon | 40.0% | |
AAAGAAGCTGTTACTCGGTT+CGG | + | chr4_3:21251310-21251329 | Msa0634300:CDS | 40.0% | |
TACTATAATCTACTTCCCCC+AGG | - | chr4_3:21251795-21251814 | None:intergenic | 40.0% | |
TTCTACGTGTGAACAACTCT+TGG | - | chr4_3:21251843-21251862 | None:intergenic | 40.0% | |
CACACGTAGAAATTCAACTC+GGG | + | chr4_3:21251852-21251871 | Msa0634300:CDS | 40.0% | |
! | TCAAAGGAGTTCTAACTAGG+AGG | - | chr4_3:21251963-21251982 | None:intergenic | 40.0% |
ACCAACCAAGTTGTCAGTTT+GGG | + | chr4_3:21251996-21252015 | Msa0634300:intron | 40.0% | |
TTCATCCCAAACTGACAACT+TGG | - | chr4_3:21252004-21252023 | None:intergenic | 40.0% | |
AGAGCTTGATGCTGGAAAAT+TGG | + | chr4_3:21252419-21252438 | Msa0634300:CDS | 40.0% | |
AAAATTGGAGGAACAAGCAG+TGG | + | chr4_3:21252434-21252453 | Msa0634300:CDS | 40.0% | |
TAGTCGTGTTCCTTCCAATT+CGG | + | chr4_3:21252659-21252678 | Msa0634300:CDS | 40.0% | |
CAGCGATATCGTTTGTAGTT+CGG | - | chr4_3:21252737-21252756 | None:intergenic | 40.0% | |
!! | CCTGCAGTTTAAGTCTTGTT+TGG | - | chr4_3:21252884-21252903 | None:intergenic | 40.0% |
CCAAACAAGACTTAAACTGC+AGG | + | chr4_3:21252881-21252900 | Msa0634300:CDS | 40.0% | |
AACAAGACTTAAACTGCAGG+TGG | + | chr4_3:21252884-21252903 | Msa0634300:CDS | 40.0% | |
AGCTCTTTCGTAATATCGGA+AGG | - | chr4_3:21252945-21252964 | None:intergenic | 40.0% | |
AGTTGCTGCTCGAAAAATGA+AGG | + | chr4_3:21253091-21253110 | Msa0634300:CDS | 40.0% | |
GAAAAATGAAGGAAGCTGCT+AGG | + | chr4_3:21253102-21253121 | Msa0634300:CDS | 40.0% | |
!! | AGAAGCTTTGGAAAGAGTAG+AGG | + | chr4_3:21253388-21253407 | Msa0634300:CDS | 40.0% |
AGGGAAGTTAGTAGTTGAAG+AGG | + | chr4_3:21253421-21253440 | Msa0634300:CDS | 40.0% | |
TTTAAGAAAATGGCGATCCG+AGG | + | chr4_3:21253445-21253464 | Msa0634300:CDS | 40.0% | |
TTAAGAAAATGGCGATCCGA+GGG | + | chr4_3:21253446-21253465 | Msa0634300:CDS | 40.0% | |
AGCTTCTTCGATAGTGAGAA+GGG | - | chr4_3:21253511-21253530 | None:intergenic | 40.0% | |
CGATAGGTCAAATATTGAGC+CGG | + | chr4_3:21253603-21253622 | Msa0634300:CDS | 40.0% | |
ATGATGCCAGAGAAGTTTGA+AGG | + | chr4_3:21253632-21253651 | Msa0634300:CDS | 40.0% | |
!! | GATGAAAAGGAAAGTGTCGT+TGG | + | chr4_3:21253679-21253698 | Msa0634300:CDS | 40.0% |
AGAAGCCAACTTTGAACTTG+AGG | + | chr4_3:21253852-21253871 | Msa0634300:CDS | 40.0% | |
CATCACCTCAAGTTCAAAGT+TGG | - | chr4_3:21253860-21253879 | None:intergenic | 40.0% | |
GAAGGAGAACGGTTTAAGAG+CGG | + | chr4_3:21251255-21251274 | Msa0634300:CDS | 45.0% | |
! | TGTGTTTACCCTCTAGTTCC+TGG | + | chr4_3:21251774-21251793 | Msa0634300:intron | 45.0% |
! | GTGTTTACCCTCTAGTTCCT+GGG | + | chr4_3:21251775-21251794 | Msa0634300:intron | 45.0% |
! | TGTTTACCCTCTAGTTCCTG+GGG | + | chr4_3:21251776-21251795 | Msa0634300:intron | 45.0% |
CTCGGGTTCTTCCAAATCAT+TGG | + | chr4_3:21251869-21251888 | Msa0634300:intron | 45.0% | |
CCATGTGACGACCAATGATT+TGG | - | chr4_3:21251883-21251902 | None:intergenic | 45.0% | |
CCAAATCATTGGTCGTCACA+TGG | + | chr4_3:21251880-21251899 | Msa0634300:intron | 45.0% | |
CACCAACCAAGTTGTCAGTT+TGG | + | chr4_3:21251995-21252014 | Msa0634300:intron | 45.0% | |
TCCCAAACTGACAACTTGGT+TGG | - | chr4_3:21252000-21252019 | None:intergenic | 45.0% | |
GGGAGCCACTGTAATAATCA+TGG | - | chr4_3:21252102-21252121 | None:intergenic | 45.0% | |
CACAAAACCAAAACTGCGGT+TGG | - | chr4_3:21252188-21252207 | None:intergenic | 45.0% | |
AACACAGAAGAGCTTGATGC+TGG | + | chr4_3:21252411-21252430 | Msa0634300:CDS | 45.0% | |
GCTTGATGCTGGAAAATTGG+AGG | + | chr4_3:21252422-21252441 | Msa0634300:CDS | 45.0% | |
TAAACCTGGATTCGCCGAAT+TGG | - | chr4_3:21252676-21252695 | None:intergenic | 45.0% | |
GACTGTGTGCAAAACTGTGA+TGG | + | chr4_3:21253179-21253198 | Msa0634300:CDS | 45.0% | |
TCTAACATGCAAAGCTCGAG+AGG | + | chr4_3:21253232-21253251 | Msa0634300:CDS | 45.0% | |
GAAGGCTCTTGAAGAAGCTT+TGG | + | chr4_3:21253376-21253395 | Msa0634300:CDS | 45.0% | |
AGAGTAGAGGCTGCAAATAG+AGG | + | chr4_3:21253401-21253420 | Msa0634300:CDS | 45.0% | |
GAGTAGAGGCTGCAAATAGA+GGG | + | chr4_3:21253402-21253421 | Msa0634300:CDS | 45.0% | |
! | TGATCGCCTTTTGTTACCCT+CGG | - | chr4_3:21253465-21253484 | None:intergenic | 45.0% |
GAGCTTCTTCGATAGTGAGA+AGG | - | chr4_3:21253512-21253531 | None:intergenic | 45.0% | |
CTCACTATCGAAGAAGCTCT+CGG | + | chr4_3:21253513-21253532 | Msa0634300:CDS | 45.0% | |
!! | AGTCGGCTTTAGAACTGGTT+TGG | - | chr4_3:21253579-21253598 | None:intergenic | 45.0% |
!! | GATAGAGTCGGCTTTAGAAC+TGG | - | chr4_3:21253584-21253603 | None:intergenic | 45.0% |
! | CTAAAGCCGACTCTATCGAT+AGG | + | chr4_3:21253587-21253606 | Msa0634300:CDS | 45.0% |
TCTCTGGCATCATCAGTTTC+CGG | - | chr4_3:21253625-21253644 | None:intergenic | 45.0% | |
ATGCCAGAGAAGTTTGAAGG+TGG | + | chr4_3:21253635-21253654 | Msa0634300:CDS | 45.0% | |
TGCCAGAGAAGTTTGAAGGT+GGG | + | chr4_3:21253636-21253655 | Msa0634300:CDS | 45.0% | |
ATCCCACCTTCAAACTTCTC+TGG | - | chr4_3:21253641-21253660 | None:intergenic | 45.0% | |
!!! | GAAAAATATTATTATTATTT+TGG | + | chr4_3:21251491-21251510 | Msa0634300:intron | 5.0% |
!!! | TGAATTTTATTATTTTTTAT+TGG | + | chr4_3:21251514-21251533 | Msa0634300:intron | 5.0% |
GGAAACTCCTGATATGGTGG+TGG | + | chr4_3:21251210-21251229 | Msa0634300:CDS | 50.0% | |
!! | CTGATATGGTGGTGGTGAAC+CGG | + | chr4_3:21251218-21251237 | Msa0634300:CDS | 50.0% |
AAACCGTTCTCCTTCGAACC+CGG | - | chr4_3:21251250-21251269 | None:intergenic | 50.0% | |
!! | GGTTCGGTGGTGTTGGTTAT+TGG | + | chr4_3:21251326-21251345 | Msa0634300:CDS | 50.0% |
! | GTTTACCCTCTAGTTCCTGG+GGG | + | chr4_3:21251777-21251796 | Msa0634300:intron | 50.0% |
TACTTCCCCCAGGAACTAGA+GGG | - | chr4_3:21251785-21251804 | None:intergenic | 50.0% | |
ACAACTCTTGGCCAGACTTC+TGG | - | chr4_3:21251831-21251850 | None:intergenic | 50.0% | |
GGTGAGCTGAGGAACATCAA+AGG | - | chr4_3:21251979-21251998 | None:intergenic | 50.0% | |
!! | ACAACTTGGTTGGTGAGCTG+AGG | - | chr4_3:21251990-21252009 | None:intergenic | 50.0% |
GGAGGAACAAGCAGTGGAAT+TGG | + | chr4_3:21252440-21252459 | Msa0634300:CDS | 50.0% | |
TGGAAGGAACACGACTACCA+TGG | - | chr4_3:21252656-21252675 | None:intergenic | 50.0% | |
! | CGCTGATGTTCGAGTTTCTG+TGG | + | chr4_3:21252752-21252771 | Msa0634300:CDS | 50.0% |
GCTTCAACGATTGAGTTCCG+AGG | + | chr4_3:21252962-21252981 | Msa0634300:CDS | 50.0% | |
CGGTTCACCACCACCATATC+AGG | - | chr4_3:21251220-21251239 | None:intergenic | 55.0% | |
GGTGGTGAACCGGATTGAAC+CGG | + | chr4_3:21251228-21251247 | Msa0634300:CDS | 55.0% | |
GTGGTGAACCGGATTGAACC+GGG | + | chr4_3:21251229-21251248 | Msa0634300:CDS | 55.0% | |
CCTTCGAACCCGGTTCAATC+CGG | - | chr4_3:21251240-21251259 | None:intergenic | 55.0% | |
GAACCGGGTTCGAAGGAGAA+CGG | + | chr4_3:21251244-21251263 | Msa0634300:CDS | 55.0% | |
!! | GAAGCTGTTACTCGGTTCGG+TGG | + | chr4_3:21251313-21251332 | Msa0634300:CDS | 55.0% |
!! | GTTACTCGGTTCGGTGGTGT+TGG | + | chr4_3:21251319-21251338 | Msa0634300:CDS | 55.0% |
CTACTTCCCCCAGGAACTAG+AGG | - | chr4_3:21251786-21251805 | None:intergenic | 55.0% | |
! | GATCGGTCCAACCGCAGTTT+TGG | + | chr4_3:21252178-21252197 | Msa0634300:intron | 55.0% |
CCTGGATTCGCCGAATTGGA+AGG | - | chr4_3:21252672-21252691 | None:intergenic | 55.0% | |
CCTTCCAATTCGGCGAATCC+AGG | + | chr4_3:21252669-21252688 | Msa0634300:CDS | 55.0% | |
GGCGATCCGAGGGTAACAAA+AGG | + | chr4_3:21253456-21253475 | Msa0634300:CDS | 55.0% | |
! | GTGTCGTTGGGTCAGATGCT+TGG | + | chr4_3:21253692-21253711 | Msa0634300:CDS | 55.0% |
CCGGATTGAACCGGGTTCGA+AGG | + | chr4_3:21251237-21251256 | Msa0634300:CDS | 60.0% | |
CTGGAGTTCGGCCAGAAGTC+TGG | + | chr4_3:21251817-21251836 | Msa0634300:CDS | 60.0% | |
CTCGGCAAGTGCAGCTGCTT+CGG | - | chr4_3:21253132-21253151 | None:intergenic | 60.0% | |
GGCAAGTGCAGCTGCTTCGG+CGG | - | chr4_3:21253129-21253148 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 21251102 | 21254180 | 21251102 | ID=Msa0634300;Name=Msa0634300 |
chr4_3 | mRNA | 21251102 | 21254180 | 21251102 | ID=Msa0634300-mRNA-1;Parent=Msa0634300;Name=Msa0634300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|0|0.66|0.66|1|1|3|303|583 |
chr4_3 | exon | 21251102 | 21251402 | 21251102 | ID=Msa0634300-mRNA-1:exon:5539;Parent=Msa0634300-mRNA-1 |
chr4_3 | exon | 21251790 | 21251873 | 21251790 | ID=Msa0634300-mRNA-1:exon:5540;Parent=Msa0634300-mRNA-1 |
chr4_3 | exon | 21252405 | 21254180 | 21252405 | ID=Msa0634300-mRNA-1:exon:5541;Parent=Msa0634300-mRNA-1 |
chr4_3 | five_prime_UTR | 21251102 | 21251207 | 21251102 | ID=Msa0634300-mRNA-1:five_prime_utr;Parent=Msa0634300-mRNA-1 |
chr4_3 | CDS | 21251208 | 21251402 | 21251208 | ID=Msa0634300-mRNA-1:cds;Parent=Msa0634300-mRNA-1 |
chr4_3 | CDS | 21251790 | 21251873 | 21251790 | ID=Msa0634300-mRNA-1:cds;Parent=Msa0634300-mRNA-1 |
chr4_3 | CDS | 21252405 | 21253877 | 21252405 | ID=Msa0634300-mRNA-1:cds;Parent=Msa0634300-mRNA-1 |
chr4_3 | three_prime_UTR | 21253878 | 21254180 | 21253878 | ID=Msa0634300-mRNA-1:three_prime_utr;Parent=Msa0634300-mRNA-1 |
Gene Sequence |
Protein sequence |