AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0634300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634300 MtrunA17_Chr4g0013151 90.051 583 29 2 1 583 66 619 0.0 965
Msa0634300 MtrunA17_Chr7g0244501 61.977 597 161 14 13 583 14 570 0.0 632
Msa0634300 MtrunA17_Chr3g0114551 36.495 622 293 13 13 571 14 596 9.23e-81 265
Msa0634300 MtrunA17_Chr5g0438111 35.911 582 283 16 18 576 20 534 1.16e-65 223
Msa0634300 MtrunA17_Chr3g0133891 31.143 350 226 4 113 452 512 856 1.11e-32 134
Msa0634300 MtrunA17_Chr1g0153431 32.453 265 173 2 193 452 575 838 4.39e-26 113
Msa0634300 MtrunA17_Chr8g0369191 30.822 292 179 4 193 462 284 574 2.83e-18 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634300 AT2G38370.2 44.103 585 227 17 2 569 20 521 6.48e-111 342
Msa0634300 AT2G38370.1 44.103 585 227 17 2 569 3 504 7.81e-111 342
Msa0634300 AT2G40480.1 36.317 581 256 17 5 576 40 515 1.00e-68 231
Msa0634300 AT3G51720.1 34.111 557 188 14 18 569 6 388 8.32e-65 218
Msa0634300 AT3G56270.1 32.720 489 222 12 16 501 36 420 5.01e-40 152
Msa0634300 AT2G26570.1 33.133 332 208 5 125 452 408 729 1.17e-33 137
Msa0634300 AT2G26570.2 33.133 332 208 5 125 452 408 729 1.17e-33 137
Msa0634300 AT4G33390.1 35.897 273 170 2 193 461 459 730 4.18e-27 117
Msa0634300 AT5G42880.1 30.970 268 156 4 193 453 423 668 6.34e-21 97.8
Msa0634300 AT1G45545.1 29.572 257 173 4 201 451 424 678 5.53e-17 85.1
Msa0634300 AT1G45545.2 29.572 257 173 4 201 451 425 679 5.54e-17 85.1

Find 112 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCGGTTATTTGACATAAA+TGG 0.131409 4_3:+21253530 Msa0634300:CDS
CTAGATTCTTGTTTGTTATT+TGG 0.134413 4_3:+21253975 Msa0634300:three_prime_UTR
GGCAGAACATTTCAAGAAAA+TGG 0.171368 4_3:+21252983 Msa0634300:CDS
TAGATTCTTGTTTGTTATTT+GGG 0.206714 4_3:+21253976 Msa0634300:three_prime_UTR
GGTTCGGTGGTGTTGGTTAT+TGG 0.246121 4_3:+21251326 Msa0634300:CDS
CGAAGCAAATGTATCGAAAA+TGG 0.273101 4_3:+21253304 Msa0634300:CDS
TCTCTGGCATCATCAGTTTC+CGG 0.279858 4_3:-21253622 None:intergenic
TTGAAGAGGCTTTAAGAAAA+TGG 0.291438 4_3:+21253435 Msa0634300:CDS
TCTGCTAAGAGAAAGAAATT+TGG 0.309514 4_3:+21253785 Msa0634300:CDS
AGAGCTTGATGCTGGAAAAT+TGG 0.325183 4_3:+21252419 Msa0634300:CDS
TGTTGTGTTGTGAAGTGTTT+AGG 0.329213 4_3:-21251138 None:intergenic
ACAACTCTTGGCCAGACTTC+TGG 0.332192 4_3:-21251828 None:intergenic
AAGAAGACAAGAAAATAAAA+AGG 0.352466 4_3:-21251167 None:intergenic
AAGAGAAAGAAATTTGGTTT+TGG 0.353841 4_3:+21253791 Msa0634300:CDS
CCTGCAGTTTAAGTCTTGTT+TGG 0.360526 4_3:-21252881 None:intergenic
CGGTTCACCACCACCATATC+AGG 0.360784 4_3:-21251217 None:intergenic
TTCAATGGAAACTCCTGATA+TGG 0.361446 4_3:+21251204 Msa0634300:exon
GAAGGCTCTTGAAGAAGCTT+TGG 0.361979 4_3:+21253376 Msa0634300:CDS
CTCGGTTATTTGACATAAAT+GGG 0.367655 4_3:+21253531 Msa0634300:CDS
TAAACCTGGATTCGCCGAAT+TGG 0.369316 4_3:-21252673 None:intergenic
TTGAAGCTCTTTCGTAATAT+CGG 0.374582 4_3:-21252946 None:intergenic
CTCGGCAAGTGCAGCTGCTT+CGG 0.385931 4_3:-21253129 None:intergenic
GTGTTTACCCTCTAGTTCCT+GGG 0.386687 4_3:+21251775 Msa0634300:intron
TGCCTATCAAATTCAAAAGA+TGG 0.395264 4_3:-21253731 None:intergenic
GGAAGTAGATTATAGTAATC+TGG 0.399737 4_3:+21251798 Msa0634300:CDS
GGAGGAACAAGCAGTGGAAT+TGG 0.401433 4_3:+21252440 Msa0634300:CDS
AGTCGGCTTTAGAACTGGTT+TGG 0.412171 4_3:-21253576 None:intergenic
AGCAGCAACTAATCTAAATT+CGG 0.412648 4_3:-21253078 None:intergenic
CTGGAGTTCGGCCAGAAGTC+TGG 0.417320 4_3:+21251817 Msa0634300:CDS
CCTTCGAACCCGGTTCAATC+CGG 0.418671 4_3:-21251237 None:intergenic
GGTGGTGAACCGGATTGAAC+CGG 0.421354 4_3:+21251228 Msa0634300:CDS
CCTTCCAATTCGGCGAATCC+AGG 0.426962 4_3:+21252669 Msa0634300:CDS
ATTCTGAGTTAAACTCTCTC+TGG 0.432246 4_3:-21252823 None:intergenic
CAGCGATATCGTTTGTAGTT+CGG 0.432690 4_3:-21252734 None:intergenic
AGAATAAAACGAATTACATA+TGG 0.437327 4_3:-21254111 None:intergenic
CTATTATTATGATTATGAAC+AGG 0.443762 4_3:-21251352 None:intergenic
AAAGAAGCTGTTACTCGGTT+CGG 0.446194 4_3:+21251310 Msa0634300:CDS
GATAGAGTCGGCTTTAGAAC+TGG 0.446529 4_3:-21253581 None:intergenic
GCAGAACATTTCAAGAAAAT+GGG 0.446538 4_3:+21252984 Msa0634300:CDS
GTTGAATTTATGTGAAGCTA+AGG 0.460946 4_3:+21252596 Msa0634300:CDS
ACGAAAGAATCTCGATGAAA+AGG 0.462368 4_3:+21253666 Msa0634300:CDS
AAGAGCTTATCGTTAAAGAA+AGG 0.463956 4_3:+21252466 Msa0634300:CDS
CATCACCTCAAGTTCAAAGT+TGG 0.465116 4_3:-21253857 None:intergenic
CTGATATGGTGGTGGTGAAC+CGG 0.466041 4_3:+21251218 Msa0634300:CDS
ATCCCACCTTCAAACTTCTC+TGG 0.472004 4_3:-21253638 None:intergenic
GTTACTCGGTTCGGTGGTGT+TGG 0.473117 4_3:+21251319 Msa0634300:CDS
TTCTACGTGTGAACAACTCT+TGG 0.475377 4_3:-21251840 None:intergenic
AGAGTAGAGGCTGCAAATAG+AGG 0.481776 4_3:+21253401 Msa0634300:CDS
AAACCGTTCTCCTTCGAACC+CGG 0.483931 4_3:-21251247 None:intergenic
GATTATAGTAATCTGGAGTT+CGG 0.487372 4_3:+21251805 Msa0634300:CDS
AGGGAAGTTAGTAGTTGAAG+AGG 0.491762 4_3:+21253421 Msa0634300:CDS
ACAATTGTATAACTCTTGTA+AGG 0.495615 4_3:+21254074 Msa0634300:three_prime_UTR
TATTAACCTCATTATTCCTC+AGG 0.502714 4_3:+21251381 Msa0634300:CDS
AGTTCCCTTAAAATTAAACC+TGG 0.508559 4_3:-21252687 None:intergenic
AACACAGAAGAGCTTGATGC+TGG 0.508566 4_3:+21252411 Msa0634300:CDS
GATGAAAAGGAAAGTGTCGT+TGG 0.508711 4_3:+21253679 Msa0634300:CDS
TAGTCGTGTTCCTTCCAATT+CGG 0.511368 4_3:+21252659 Msa0634300:CDS
CCGGATTGAACCGGGTTCGA+AGG 0.514162 4_3:+21251237 Msa0634300:CDS
AGAGCTTATCGTTAAAGAAA+GGG 0.516851 4_3:+21252467 Msa0634300:CDS
CGCTGATGTTCGAGTTTCTG+TGG 0.525095 4_3:+21252752 Msa0634300:CDS
CTGTTAAAGAAGCTGTTACT+CGG 0.535629 4_3:+21251305 Msa0634300:CDS
GGCAAGTGCAGCTGCTTCGG+CGG 0.535980 4_3:-21253126 None:intergenic
ATGAAAAGGAAAGTGTCGTT+GGG 0.538173 4_3:+21253680 Msa0634300:CDS
AGCTTCTTCGATAGTGAGAA+GGG 0.538244 4_3:-21253508 None:intergenic
TTTCTTGAAATGTTCTGCCT+CGG 0.538325 4_3:-21252979 None:intergenic
CGATAGGTCAAATATTGAGC+CGG 0.541111 4_3:+21253603 Msa0634300:CDS
TATTAGCTTAATTCTTGTCA+AGG 0.543213 4_3:+21254139 Msa0634300:three_prime_UTR
AAGAGTTGGAAAGTACCAAA+AGG 0.544666 4_3:+21252508 Msa0634300:CDS
TGTTTACCCTCTAGTTCCTG+GGG 0.544676 4_3:+21251776 Msa0634300:intron
GCTTGATGCTGGAAAATTGG+AGG 0.546478 4_3:+21252422 Msa0634300:CDS
AGAAGCCAACTTTGAACTTG+AGG 0.546691 4_3:+21253852 Msa0634300:CDS
GGCGATCCGAGGGTAACAAA+AGG 0.547667 4_3:+21253456 Msa0634300:CDS
GAGTAGAGGCTGCAAATAGA+GGG 0.556599 4_3:+21253402 Msa0634300:CDS
GCTTCTTTAACAGACTCAAA+CGG 0.556975 4_3:-21251295 None:intergenic
AAAGCGTTATCTTATTATGA+CGG 0.559732 4_3:+21253155 Msa0634300:CDS
GTGTCGTTGGGTCAGATGCT+TGG 0.562470 4_3:+21253692 Msa0634300:CDS
TAGAGCATTATACTCTTCAA+AGG 0.563624 4_3:-21253213 None:intergenic
AGCTCTTTCGTAATATCGGA+AGG 0.563753 4_3:-21252942 None:intergenic
CGAAGTTAAAACAAGCAAGA+AGG 0.565482 4_3:+21253358 Msa0634300:CDS
GAGCTTCTTCGATAGTGAGA+AGG 0.567321 4_3:-21253509 None:intergenic
CCTGGATTCGCCGAATTGGA+AGG 0.568328 4_3:-21252669 None:intergenic
TAAATACCTGAGGAATAATG+AGG 0.573109 4_3:-21251387 None:intergenic
AGAAGCTTTGGAAAGAGTAG+AGG 0.581826 4_3:+21253388 Msa0634300:CDS
GAACCGGGTTCGAAGGAGAA+CGG 0.591915 4_3:+21251244 Msa0634300:CDS
GTGGTGAACCGGATTGAACC+GGG 0.592369 4_3:+21251229 Msa0634300:CDS
GTATTGTGATTGAATTTGCT+AGG 0.594210 4_3:+21253952 Msa0634300:three_prime_UTR
CTCACTATCGAAGAAGCTCT+CGG 0.599628 4_3:+21253513 Msa0634300:CDS
ATGCCAGAGAAGTTTGAAGG+TGG 0.600167 4_3:+21253635 Msa0634300:CDS
ATTTGACCTATCGATAGAGT+CGG 0.604595 4_3:-21253593 None:intergenic
CCAAACAAGACTTAAACTGC+AGG 0.604751 4_3:+21252881 Msa0634300:CDS
GACTGTGTGCAAAACTGTGA+TGG 0.605971 4_3:+21253179 Msa0634300:CDS
CTAAAGCCGACTCTATCGAT+AGG 0.608619 4_3:+21253587 Msa0634300:CDS
AAAATTGGAGGAACAAGCAG+TGG 0.610904 4_3:+21252434 Msa0634300:CDS
AAGTGAAAGTGAAAGTGTAA+CGG 0.616017 4_3:-21251107 None:intergenic
TTTAAGAAAATGGCGATCCG+AGG 0.618775 4_3:+21253445 Msa0634300:CDS
ATGATGCCAGAGAAGTTTGA+AGG 0.619171 4_3:+21253632 Msa0634300:CDS
GAAGCTGTTACTCGGTTCGG+TGG 0.622084 4_3:+21251313 Msa0634300:CDS
TTAAGAAAATGGCGATCCGA+GGG 0.633233 4_3:+21253446 Msa0634300:CDS
TCTAACATGCAAAGCTCGAG+AGG 0.633623 4_3:+21253232 Msa0634300:CDS
CACACGTAGAAATTCAACTC+GGG 0.639397 4_3:+21251852 Msa0634300:CDS
AACAAGACTTAAACTGCAGG+TGG 0.640787 4_3:+21252884 Msa0634300:CDS
TGGAAGGAACACGACTACCA+TGG 0.644594 4_3:-21252653 None:intergenic
TCACACGTAGAAATTCAACT+CGG 0.645415 4_3:+21251851 Msa0634300:CDS
GGAAACTCCTGATATGGTGG+TGG 0.647078 4_3:+21251210 Msa0634300:CDS
GATGAAGAAAAGGAAAACCA+TGG 0.649184 4_3:+21252636 Msa0634300:CDS
ACTCAACAAGAAACTTCAGA+AGG 0.651200 4_3:+21252779 Msa0634300:CDS
AAAGAAGCTGAAATTGAATG+TGG 0.654834 4_3:+21252909 Msa0634300:CDS
GTTTACCCTCTAGTTCCTGG+GGG 0.665655 4_3:+21251777 Msa0634300:intron
GAAGGAGAACGGTTTAAGAG+CGG 0.672078 4_3:+21251255 Msa0634300:CDS
GCTTCAACGATTGAGTTCCG+AGG 0.676528 4_3:+21252962 Msa0634300:CDS
AATGGAAACTCCTGATATGG+TGG 0.681888 4_3:+21251207 Msa0634300:exon
TGCCAGAGAAGTTTGAAGGT+GGG 0.696821 4_3:+21253636 Msa0634300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATTTTTCTAATTTT+AGG + chr4_3:21251567-21251586 Msa0634300:intron 10.0%
!!! TTTGTATTTTTCTAATTTTA+GGG + chr4_3:21251568-21251587 Msa0634300:intron 10.0%
!! ATACATTCATTGAAAAAATA+GGG - chr4_3:21252122-21252141 None:intergenic 15.0%
!!! ATGAACATAGTTTTAAATTA+CGG - chr4_3:21252242-21252261 None:intergenic 15.0%
!!! TAATTTAAAACTATGTTCAT+AGG + chr4_3:21252242-21252261 Msa0634300:intron 15.0%
!!! AAAACCTTATGTTTTTTTTT+TGG + chr4_3:21252269-21252288 Msa0634300:intron 15.0%
!! AAATCCAAAAAAAAAACATA+AGG - chr4_3:21252276-21252295 None:intergenic 15.0%
!! AAGAAGACAAGAAAATAAAA+AGG - chr4_3:21251170-21251189 None:intergenic 20.0%
!! CTATTATTATGATTATGAAC+AGG - chr4_3:21251355-21251374 None:intergenic 20.0%
!! AACATAAAAATAAATACCTG+AGG - chr4_3:21251400-21251419 None:intergenic 20.0%
!! TTCTACAAAAATGTAAACTT+TGG - chr4_3:21251474-21251493 None:intergenic 20.0%
!!! TTTTCTAACTAAGACTTAAT+TGG - chr4_3:21251916-21251935 None:intergenic 20.0%
!! CATACATTCATTGAAAAAAT+AGG - chr4_3:21252123-21252142 None:intergenic 20.0%
!!! GAAAATGGATGTTTTAAAAA+GGG + chr4_3:21253319-21253338 Msa0634300:CDS 20.0%
!!! TAGATTCTTGTTTGTTATTT+GGG + chr4_3:21253976-21253995 Msa0634300:three_prime_UTR 20.0%
!! AGAATAAAACGAATTACATA+TGG - chr4_3:21254114-21254133 None:intergenic 20.0%
!!! TTTTTTCACTACTCTTTCAA+TGG + chr4_3:21251189-21251208 Msa0634300:exon 25.0%
! TATGAATTATGAATGCTCTT+TGG + chr4_3:21251936-21251955 Msa0634300:intron 25.0%
!! TTTTACCATGATTATTACAG+TGG + chr4_3:21252094-21252113 Msa0634300:intron 25.0%
! CAACAATATAAACATCTTAG+AGG - chr4_3:21252215-21252234 None:intergenic 25.0%
!! TTTTGGATTTCATACGTTTT+TGG + chr4_3:21252286-21252305 Msa0634300:intron 25.0%
!! TTTGGATTTCATACGTTTTT+GGG + chr4_3:21252287-21252306 Msa0634300:intron 25.0%
! GAAAAAAGAAGATGAAGAAA+AGG + chr4_3:21252626-21252645 Msa0634300:CDS 25.0%
!!! GAATCCAGGTTTAATTTTAA+GGG + chr4_3:21252683-21252702 Msa0634300:CDS 25.0%
! TTCAAAAATAACTTCACTAG+AGG + chr4_3:21252848-21252867 Msa0634300:CDS 25.0%
!! ATAAGATAACGCTTTTATCT+CGG - chr4_3:21253150-21253169 None:intergenic 25.0%
!! AAAGCGTTATCTTATTATGA+CGG + chr4_3:21253155-21253174 Msa0634300:CDS 25.0%
!!! CGAAAATGGATGTTTTAAAA+AGG + chr4_3:21253318-21253337 Msa0634300:CDS 25.0%
!! ATCCATCTTTTGAATTTGAT+AGG + chr4_3:21253729-21253748 Msa0634300:CDS 25.0%
!!! AAGAGAAAGAAATTTGGTTT+TGG + chr4_3:21253791-21253810 Msa0634300:CDS 25.0%
! CTGATAAGATTACAAAAATG+AGG + chr4_3:21253920-21253939 Msa0634300:three_prime_UTR 25.0%
! TACAAAAATGAGGATCTAAA+TGG + chr4_3:21253930-21253949 Msa0634300:three_prime_UTR 25.0%
!!! CTAGATTCTTGTTTGTTATT+TGG + chr4_3:21253975-21253994 Msa0634300:three_prime_UTR 25.0%
! ACAATTGTATAACTCTTGTA+AGG + chr4_3:21254074-21254093 Msa0634300:three_prime_UTR 25.0%
!! TATTAGCTTAATTCTTGTCA+AGG + chr4_3:21254139-21254158 Msa0634300:three_prime_UTR 25.0%
! AAGTGAAAGTGAAAGTGTAA+CGG - chr4_3:21251110-21251129 None:intergenic 30.0%
TATTAACCTCATTATTCCTC+AGG + chr4_3:21251381-21251400 Msa0634300:CDS 30.0%
TAAATACCTGAGGAATAATG+AGG - chr4_3:21251390-21251409 None:intergenic 30.0%
TTGGTGAATGTTTGTGATTT+AGG + chr4_3:21251533-21251552 Msa0634300:intron 30.0%
TGGTGAATGTTTGTGATTTA+GGG + chr4_3:21251534-21251553 Msa0634300:intron 30.0%
!! TTTCTAATTTTAGGGAGAGT+TGG + chr4_3:21251576-21251595 Msa0634300:intron 30.0%
GGAAGTAGATTATAGTAATC+TGG + chr4_3:21251798-21251817 Msa0634300:CDS 30.0%
! GATTATAGTAATCTGGAGTT+CGG + chr4_3:21251805-21251824 Msa0634300:CDS 30.0%
AATTGCAGTCAAAATGTGAT+CGG + chr4_3:21252161-21252180 Msa0634300:intron 30.0%
! TTTTCACAAAACCAAAACTG+CGG - chr4_3:21252192-21252211 None:intergenic 30.0%
! TTGGATTTCATACGTTTTTG+GGG + chr4_3:21252288-21252307 Msa0634300:intron 30.0%
!!! TTTTGGGGGTATTTTCTTTT+TGG + chr4_3:21252303-21252322 Msa0634300:intron 30.0%
AAGAGCTTATCGTTAAAGAA+AGG + chr4_3:21252466-21252485 Msa0634300:CDS 30.0%
AGAGCTTATCGTTAAAGAAA+GGG + chr4_3:21252467-21252486 Msa0634300:CDS 30.0%
!!! TCTCGATGTTTTAAAAGAGT+TGG + chr4_3:21252494-21252513 Msa0634300:CDS 30.0%
GTTGAATTTATGTGAAGCTA+AGG + chr4_3:21252596-21252615 Msa0634300:CDS 30.0%
!! CGAATCCAGGTTTAATTTTA+AGG + chr4_3:21252682-21252701 Msa0634300:CDS 30.0%
AGTTCCCTTAAAATTAAACC+TGG - chr4_3:21252690-21252709 None:intergenic 30.0%
AAAGAAGCTGAAATTGAATG+TGG + chr4_3:21252909-21252928 Msa0634300:CDS 30.0%
TTGAAGCTCTTTCGTAATAT+CGG - chr4_3:21252949-21252968 None:intergenic 30.0%
GCAGAACATTTCAAGAAAAT+GGG + chr4_3:21252984-21253003 Msa0634300:CDS 30.0%
AGCAGCAACTAATCTAAATT+CGG - chr4_3:21253081-21253100 None:intergenic 30.0%
! TAGAGCATTATACTCTTCAA+AGG - chr4_3:21253216-21253235 None:intergenic 30.0%
!! TTGAAGAGGCTTTAAGAAAA+TGG + chr4_3:21253435-21253454 Msa0634300:CDS 30.0%
TCTCGGTTATTTGACATAAA+TGG + chr4_3:21253530-21253549 Msa0634300:CDS 30.0%
CTCGGTTATTTGACATAAAT+GGG + chr4_3:21253531-21253550 Msa0634300:CDS 30.0%
TGCCTATCAAATTCAAAAGA+TGG - chr4_3:21253734-21253753 None:intergenic 30.0%
TCTGCTAAGAGAAAGAAATT+TGG + chr4_3:21253785-21253804 Msa0634300:CDS 30.0%
! GTATTGTGATTGAATTTGCT+AGG + chr4_3:21253952-21253971 Msa0634300:three_prime_UTR 30.0%
! TTGCTGTACTATTTTGTAGA+GGG + chr4_3:21254040-21254059 Msa0634300:three_prime_UTR 30.0%
! TGTTGTGTTGTGAAGTGTTT+AGG - chr4_3:21251141-21251160 None:intergenic 35.0%
TTCAATGGAAACTCCTGATA+TGG + chr4_3:21251204-21251223 Msa0634300:exon 35.0%
GCTTCTTTAACAGACTCAAA+CGG - chr4_3:21251298-21251317 None:intergenic 35.0%
CTGTTAAAGAAGCTGTTACT+CGG + chr4_3:21251305-21251324 Msa0634300:CDS 35.0%
TCACACGTAGAAATTCAACT+CGG + chr4_3:21251851-21251870 Msa0634300:CDS 35.0%
! ACATCAAAGGAGTTCTAACT+AGG - chr4_3:21251966-21251985 None:intergenic 35.0%
TTGACTGCAATTTCGAATCA+CGG - chr4_3:21252153-21252172 None:intergenic 35.0%
!! TGGATTTCATACGTTTTTGG+GGG + chr4_3:21252289-21252308 Msa0634300:intron 35.0%
!! AAGAGTTGGAAAGTACCAAA+AGG + chr4_3:21252508-21252527 Msa0634300:CDS 35.0%
! CAGATTTTCAACAAGCCTTT+TGG - chr4_3:21252526-21252545 None:intergenic 35.0%
GATGAAGAAAAGGAAAACCA+TGG + chr4_3:21252636-21252655 Msa0634300:CDS 35.0%
ACTCAACAAGAAACTTCAGA+AGG + chr4_3:21252779-21252798 Msa0634300:CDS 35.0%
ATTCTGAGTTAAACTCTCTC+TGG - chr4_3:21252826-21252845 None:intergenic 35.0%
TTTCTTGAAATGTTCTGCCT+CGG - chr4_3:21252982-21253001 None:intergenic 35.0%
GGCAGAACATTTCAAGAAAA+TGG + chr4_3:21252983-21253002 Msa0634300:CDS 35.0%
AAAAATGAAGGAAGCTGCTA+GGG + chr4_3:21253103-21253122 Msa0634300:CDS 35.0%
CGAAGCAAATGTATCGAAAA+TGG + chr4_3:21253304-21253323 Msa0634300:CDS 35.0%
!!! GGATGTTTTAAAAAGGGTTG+AGG + chr4_3:21253325-21253344 Msa0634300:CDS 35.0%
CGAAGTTAAAACAAGCAAGA+AGG + chr4_3:21253358-21253377 Msa0634300:CDS 35.0%
ATTTGACCTATCGATAGAGT+CGG - chr4_3:21253596-21253615 None:intergenic 35.0%
ACGAAAGAATCTCGATGAAA+AGG + chr4_3:21253666-21253685 Msa0634300:CDS 35.0%
!! ATGAAAAGGAAAGTGTCGTT+GGG + chr4_3:21253680-21253699 Msa0634300:CDS 35.0%
!! CTTGCTGTACTATTTTGTAG+AGG + chr4_3:21254039-21254058 Msa0634300:three_prime_UTR 35.0%
AATGGAAACTCCTGATATGG+TGG + chr4_3:21251207-21251226 Msa0634300:exon 40.0%
AAAGAAGCTGTTACTCGGTT+CGG + chr4_3:21251310-21251329 Msa0634300:CDS 40.0%
TACTATAATCTACTTCCCCC+AGG - chr4_3:21251795-21251814 None:intergenic 40.0%
TTCTACGTGTGAACAACTCT+TGG - chr4_3:21251843-21251862 None:intergenic 40.0%
CACACGTAGAAATTCAACTC+GGG + chr4_3:21251852-21251871 Msa0634300:CDS 40.0%
! TCAAAGGAGTTCTAACTAGG+AGG - chr4_3:21251963-21251982 None:intergenic 40.0%
ACCAACCAAGTTGTCAGTTT+GGG + chr4_3:21251996-21252015 Msa0634300:intron 40.0%
TTCATCCCAAACTGACAACT+TGG - chr4_3:21252004-21252023 None:intergenic 40.0%
AGAGCTTGATGCTGGAAAAT+TGG + chr4_3:21252419-21252438 Msa0634300:CDS 40.0%
AAAATTGGAGGAACAAGCAG+TGG + chr4_3:21252434-21252453 Msa0634300:CDS 40.0%
TAGTCGTGTTCCTTCCAATT+CGG + chr4_3:21252659-21252678 Msa0634300:CDS 40.0%
CAGCGATATCGTTTGTAGTT+CGG - chr4_3:21252737-21252756 None:intergenic 40.0%
!! CCTGCAGTTTAAGTCTTGTT+TGG - chr4_3:21252884-21252903 None:intergenic 40.0%
CCAAACAAGACTTAAACTGC+AGG + chr4_3:21252881-21252900 Msa0634300:CDS 40.0%
AACAAGACTTAAACTGCAGG+TGG + chr4_3:21252884-21252903 Msa0634300:CDS 40.0%
AGCTCTTTCGTAATATCGGA+AGG - chr4_3:21252945-21252964 None:intergenic 40.0%
AGTTGCTGCTCGAAAAATGA+AGG + chr4_3:21253091-21253110 Msa0634300:CDS 40.0%
GAAAAATGAAGGAAGCTGCT+AGG + chr4_3:21253102-21253121 Msa0634300:CDS 40.0%
!! AGAAGCTTTGGAAAGAGTAG+AGG + chr4_3:21253388-21253407 Msa0634300:CDS 40.0%
AGGGAAGTTAGTAGTTGAAG+AGG + chr4_3:21253421-21253440 Msa0634300:CDS 40.0%
TTTAAGAAAATGGCGATCCG+AGG + chr4_3:21253445-21253464 Msa0634300:CDS 40.0%
TTAAGAAAATGGCGATCCGA+GGG + chr4_3:21253446-21253465 Msa0634300:CDS 40.0%
AGCTTCTTCGATAGTGAGAA+GGG - chr4_3:21253511-21253530 None:intergenic 40.0%
CGATAGGTCAAATATTGAGC+CGG + chr4_3:21253603-21253622 Msa0634300:CDS 40.0%
ATGATGCCAGAGAAGTTTGA+AGG + chr4_3:21253632-21253651 Msa0634300:CDS 40.0%
!! GATGAAAAGGAAAGTGTCGT+TGG + chr4_3:21253679-21253698 Msa0634300:CDS 40.0%
AGAAGCCAACTTTGAACTTG+AGG + chr4_3:21253852-21253871 Msa0634300:CDS 40.0%
CATCACCTCAAGTTCAAAGT+TGG - chr4_3:21253860-21253879 None:intergenic 40.0%
GAAGGAGAACGGTTTAAGAG+CGG + chr4_3:21251255-21251274 Msa0634300:CDS 45.0%
! TGTGTTTACCCTCTAGTTCC+TGG + chr4_3:21251774-21251793 Msa0634300:intron 45.0%
! GTGTTTACCCTCTAGTTCCT+GGG + chr4_3:21251775-21251794 Msa0634300:intron 45.0%
! TGTTTACCCTCTAGTTCCTG+GGG + chr4_3:21251776-21251795 Msa0634300:intron 45.0%
CTCGGGTTCTTCCAAATCAT+TGG + chr4_3:21251869-21251888 Msa0634300:intron 45.0%
CCATGTGACGACCAATGATT+TGG - chr4_3:21251883-21251902 None:intergenic 45.0%
CCAAATCATTGGTCGTCACA+TGG + chr4_3:21251880-21251899 Msa0634300:intron 45.0%
CACCAACCAAGTTGTCAGTT+TGG + chr4_3:21251995-21252014 Msa0634300:intron 45.0%
TCCCAAACTGACAACTTGGT+TGG - chr4_3:21252000-21252019 None:intergenic 45.0%
GGGAGCCACTGTAATAATCA+TGG - chr4_3:21252102-21252121 None:intergenic 45.0%
CACAAAACCAAAACTGCGGT+TGG - chr4_3:21252188-21252207 None:intergenic 45.0%
AACACAGAAGAGCTTGATGC+TGG + chr4_3:21252411-21252430 Msa0634300:CDS 45.0%
GCTTGATGCTGGAAAATTGG+AGG + chr4_3:21252422-21252441 Msa0634300:CDS 45.0%
TAAACCTGGATTCGCCGAAT+TGG - chr4_3:21252676-21252695 None:intergenic 45.0%
GACTGTGTGCAAAACTGTGA+TGG + chr4_3:21253179-21253198 Msa0634300:CDS 45.0%
TCTAACATGCAAAGCTCGAG+AGG + chr4_3:21253232-21253251 Msa0634300:CDS 45.0%
GAAGGCTCTTGAAGAAGCTT+TGG + chr4_3:21253376-21253395 Msa0634300:CDS 45.0%
AGAGTAGAGGCTGCAAATAG+AGG + chr4_3:21253401-21253420 Msa0634300:CDS 45.0%
GAGTAGAGGCTGCAAATAGA+GGG + chr4_3:21253402-21253421 Msa0634300:CDS 45.0%
! TGATCGCCTTTTGTTACCCT+CGG - chr4_3:21253465-21253484 None:intergenic 45.0%
GAGCTTCTTCGATAGTGAGA+AGG - chr4_3:21253512-21253531 None:intergenic 45.0%
CTCACTATCGAAGAAGCTCT+CGG + chr4_3:21253513-21253532 Msa0634300:CDS 45.0%
!! AGTCGGCTTTAGAACTGGTT+TGG - chr4_3:21253579-21253598 None:intergenic 45.0%
!! GATAGAGTCGGCTTTAGAAC+TGG - chr4_3:21253584-21253603 None:intergenic 45.0%
! CTAAAGCCGACTCTATCGAT+AGG + chr4_3:21253587-21253606 Msa0634300:CDS 45.0%
TCTCTGGCATCATCAGTTTC+CGG - chr4_3:21253625-21253644 None:intergenic 45.0%
ATGCCAGAGAAGTTTGAAGG+TGG + chr4_3:21253635-21253654 Msa0634300:CDS 45.0%
TGCCAGAGAAGTTTGAAGGT+GGG + chr4_3:21253636-21253655 Msa0634300:CDS 45.0%
ATCCCACCTTCAAACTTCTC+TGG - chr4_3:21253641-21253660 None:intergenic 45.0%
!!! GAAAAATATTATTATTATTT+TGG + chr4_3:21251491-21251510 Msa0634300:intron 5.0%
!!! TGAATTTTATTATTTTTTAT+TGG + chr4_3:21251514-21251533 Msa0634300:intron 5.0%
GGAAACTCCTGATATGGTGG+TGG + chr4_3:21251210-21251229 Msa0634300:CDS 50.0%
!! CTGATATGGTGGTGGTGAAC+CGG + chr4_3:21251218-21251237 Msa0634300:CDS 50.0%
AAACCGTTCTCCTTCGAACC+CGG - chr4_3:21251250-21251269 None:intergenic 50.0%
!! GGTTCGGTGGTGTTGGTTAT+TGG + chr4_3:21251326-21251345 Msa0634300:CDS 50.0%
! GTTTACCCTCTAGTTCCTGG+GGG + chr4_3:21251777-21251796 Msa0634300:intron 50.0%
TACTTCCCCCAGGAACTAGA+GGG - chr4_3:21251785-21251804 None:intergenic 50.0%
ACAACTCTTGGCCAGACTTC+TGG - chr4_3:21251831-21251850 None:intergenic 50.0%
GGTGAGCTGAGGAACATCAA+AGG - chr4_3:21251979-21251998 None:intergenic 50.0%
!! ACAACTTGGTTGGTGAGCTG+AGG - chr4_3:21251990-21252009 None:intergenic 50.0%
GGAGGAACAAGCAGTGGAAT+TGG + chr4_3:21252440-21252459 Msa0634300:CDS 50.0%
TGGAAGGAACACGACTACCA+TGG - chr4_3:21252656-21252675 None:intergenic 50.0%
! CGCTGATGTTCGAGTTTCTG+TGG + chr4_3:21252752-21252771 Msa0634300:CDS 50.0%
GCTTCAACGATTGAGTTCCG+AGG + chr4_3:21252962-21252981 Msa0634300:CDS 50.0%
CGGTTCACCACCACCATATC+AGG - chr4_3:21251220-21251239 None:intergenic 55.0%
GGTGGTGAACCGGATTGAAC+CGG + chr4_3:21251228-21251247 Msa0634300:CDS 55.0%
GTGGTGAACCGGATTGAACC+GGG + chr4_3:21251229-21251248 Msa0634300:CDS 55.0%
CCTTCGAACCCGGTTCAATC+CGG - chr4_3:21251240-21251259 None:intergenic 55.0%
GAACCGGGTTCGAAGGAGAA+CGG + chr4_3:21251244-21251263 Msa0634300:CDS 55.0%
!! GAAGCTGTTACTCGGTTCGG+TGG + chr4_3:21251313-21251332 Msa0634300:CDS 55.0%
!! GTTACTCGGTTCGGTGGTGT+TGG + chr4_3:21251319-21251338 Msa0634300:CDS 55.0%
CTACTTCCCCCAGGAACTAG+AGG - chr4_3:21251786-21251805 None:intergenic 55.0%
! GATCGGTCCAACCGCAGTTT+TGG + chr4_3:21252178-21252197 Msa0634300:intron 55.0%
CCTGGATTCGCCGAATTGGA+AGG - chr4_3:21252672-21252691 None:intergenic 55.0%
CCTTCCAATTCGGCGAATCC+AGG + chr4_3:21252669-21252688 Msa0634300:CDS 55.0%
GGCGATCCGAGGGTAACAAA+AGG + chr4_3:21253456-21253475 Msa0634300:CDS 55.0%
! GTGTCGTTGGGTCAGATGCT+TGG + chr4_3:21253692-21253711 Msa0634300:CDS 55.0%
CCGGATTGAACCGGGTTCGA+AGG + chr4_3:21251237-21251256 Msa0634300:CDS 60.0%
CTGGAGTTCGGCCAGAAGTC+TGG + chr4_3:21251817-21251836 Msa0634300:CDS 60.0%
CTCGGCAAGTGCAGCTGCTT+CGG - chr4_3:21253132-21253151 None:intergenic 60.0%
GGCAAGTGCAGCTGCTTCGG+CGG - chr4_3:21253129-21253148 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 21251102 21254180 21251102 ID=Msa0634300;Name=Msa0634300
chr4_3 mRNA 21251102 21254180 21251102 ID=Msa0634300-mRNA-1;Parent=Msa0634300;Name=Msa0634300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|0|0.66|0.66|1|1|3|303|583
chr4_3 exon 21251102 21251402 21251102 ID=Msa0634300-mRNA-1:exon:5539;Parent=Msa0634300-mRNA-1
chr4_3 exon 21251790 21251873 21251790 ID=Msa0634300-mRNA-1:exon:5540;Parent=Msa0634300-mRNA-1
chr4_3 exon 21252405 21254180 21252405 ID=Msa0634300-mRNA-1:exon:5541;Parent=Msa0634300-mRNA-1
chr4_3 five_prime_UTR 21251102 21251207 21251102 ID=Msa0634300-mRNA-1:five_prime_utr;Parent=Msa0634300-mRNA-1
chr4_3 CDS 21251208 21251402 21251208 ID=Msa0634300-mRNA-1:cds;Parent=Msa0634300-mRNA-1
chr4_3 CDS 21251790 21251873 21251790 ID=Msa0634300-mRNA-1:cds;Parent=Msa0634300-mRNA-1
chr4_3 CDS 21252405 21253877 21252405 ID=Msa0634300-mRNA-1:cds;Parent=Msa0634300-mRNA-1
chr4_3 three_prime_UTR 21253878 21254180 21253878 ID=Msa0634300-mRNA-1:three_prime_utr;Parent=Msa0634300-mRNA-1
Gene Sequence

>Msa0634300

ATGGAAACTCCTGATATGGTGGTGGTGAACCGGATTGAACCGGGTTCGAAGGAGAACGGTTTAAGAGCGGAGATTGATACTTCTGCACCGTTTGAGTCTGTTAAAGAAGCTGTTACTCGGTTCGGTGGTGTTGGTTATTGGAAACCTGTTCATAATCATAATAATAGTAACACTATTAACCTCATTATTCCTCAGTTCCTGGGGGAAGTAGATTATAGTAATCTGGAGTTCGGCCAGAAGTCTGGCCAAGAGTTGTTCACACGTAGAAATTCAACTCGGCAACAAAACACAGAAGAGCTTGATGCTGGAAAATTGGAGGAACAAGCAGTGGAATTGGAGAAAGAGCTTATCGTTAAAGAAAGGGAAACTCTCGATGTTTTAAAAGAGTTGGAAAGTACCAAAAGGCTTGTTGAAAATCTGAAATCAAAGCTACAAGCAGAAGAAGAATCTGAGTCAAATTTGAACATTAAGTTGAATTTATGTGAAGCTAAGGAGAATGAGAAAAAAGAAGATGAAGAAAAGGAAAACCATGGTAGTCGTGTTCCTTCCAATTCGGCGAATCCAGGTTTAATTTTAAGGGAACTGAAGCAAGCGAAATTGAATCTAAACCGAACTACAAACGATATCGCTGATGTTCGAGTTTCTGTGGAATCACTCAACAAGAAACTTCAGAAGGAAAGAATATCACTCGAGAAAACCAGAGAGAGTTTAACTCAGAATTCTTCAAAAATAACTTCACTAGAGGAAGAGCTAAACCAAACAAGACTTAAACTGCAGGTGGTGAAAGAAGCTGAAATTGAATGTGGTTCAGATGAACCTTCCGATATTACGAAAGAGCTTCAACGATTGAGTTCCGAGGCAGAACATTTCAAGAAAATGGGAGAAGTTGCGAAATCAGAAGTTATGAGAGCAATGTCTGAGATTGAACAGACAAAAGCTATGATAAGAACATCCGAATTTAGATTAGTTGCTGCTCGAAAAATGAAGGAAGCTGCTAGGGCCGCCGAAGCAGCTGCACTTGCCGAGATAAAAGCGTTATCTTATTATGACGGAGACTGTGTGCAAAACTGTGATGGAGTTACTCTTACCTTTGAAGAGTATAATGCTCTAACATGCAAAGCTCGAGAGGTAGATGAACAATCTAAGAAGAGAGTTCATGATGCTATGTTTCAAGTTGACGAAGCAAATGTATCGAAAATGGATGTTTTAAAAAGGGTTGAGGAAGCTACATTCGAAGTTAAAACAAGCAAGAAGGCTCTTGAAGAAGCTTTGGAAAGAGTAGAGGCTGCAAATAGAGGGAAGTTAGTAGTTGAAGAGGCTTTAAGAAAATGGCGATCCGAGGGTAACAAAAGGCGATCATCAAACTCTACAAAGTTTAAAAACCCTTCTCACTATCGAAGAAGCTCTCGGTTATTTGACATAAATGGGACGAATCAAGTTGATGATGAAGCCAAACCAGTTCTAAAGCCGACTCTATCGATAGGTCAAATATTGAGCCGGAAACTGATGATGCCAGAGAAGTTTGAAGGTGGGATGCTTAACGAAAGAATCTCGATGAAAAGGAAAGTGTCGTTGGGTCAGATGCTTGGTAAACAAAACTACAATCCATCTTTTGAATTTGATAGGCAAGTTGAGAAAGAGAATGATCAGAAGCAGTTTTCTGCTAAGAGAAAGAAATTTGGTTTTGGTAGATTCTCTCTTCTTTTGACAAAACAACAAAAGAAGAAGAAGCCAACTTTGAACTTGAGGTGA

Protein sequence

>Msa0634300

METPDMVVVNRIEPGSKENGLRAEIDTSAPFESVKEAVTRFGGVGYWKPVHNHNNSNTINLIIPQFLGEVDYSNLEFGQKSGQELFTRRNSTRQQNTEELDAGKLEEQAVELEKELIVKERETLDVLKELESTKRLVENLKSKLQAEEESESNLNIKLNLCEAKENEKKEDEEKENHGSRVPSNSANPGLILRELKQAKLNLNRTTNDIADVRVSVESLNKKLQKERISLEKTRESLTQNSSKITSLEEELNQTRLKLQVVKEAEIECGSDEPSDITKELQRLSSEAEHFKKMGEVAKSEVMRAMSEIEQTKAMIRTSEFRLVAARKMKEAARAAEAAALAEIKALSYYDGDCVQNCDGVTLTFEEYNALTCKAREVDEQSKKRVHDAMFQVDEANVSKMDVLKRVEEATFEVKTSKKALEEALERVEAANRGKLVVEEALRKWRSEGNKRRSSNSTKFKNPSHYRRSSRLFDINGTNQVDDEAKPVLKPTLSIGQILSRKLMMPEKFEGGMLNERISMKRKVSLGQMLGKQNYNPSFEFDRQVEKENDQKQFSAKRKKFGFGRFSLLLTKQQKKKKPTLNLR*