Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641390 | XP_013455791.1 | 96.127 | 568 | 21 | 1 | 1 | 568 | 1 | 567 | 0.0 | 1113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641390 | sp|Q66GQ2|Y5162_ARATH | 28.194 | 454 | 270 | 14 | 96 | 511 | 44 | 479 | 2.99e-22 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641390 | A0A072UJH3 | 96.127 | 568 | 21 | 1 | 1 | 568 | 1 | 567 | 0.0 | 1113 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042610 | Msa0641390 | 0.818133 | 2.297579e-52 | -8.615850e-47 |
| Msa0087940 | Msa0641390 | 0.810570 | 1.079636e-50 | -8.615850e-47 |
| Msa0089980 | Msa0641390 | 0.801031 | 1.090740e-48 | -8.615850e-47 |
| Msa0090010 | Msa0641390 | 0.802210 | 6.250985e-49 | -8.615850e-47 |
| Msa0115560 | Msa0641390 | 0.803338 | 3.655721e-49 | -8.615850e-47 |
| Msa0604340 | Msa0641390 | 0.805286 | 1.436129e-49 | -8.615850e-47 |
| Msa0614000 | Msa0641390 | 0.802063 | 6.700866e-49 | -8.615850e-47 |
| Msa0626450 | Msa0641390 | 0.803416 | 3.522054e-49 | -8.615850e-47 |
| Msa0641390 | Msa0664600 | 0.804370 | 2.231983e-49 | -8.615850e-47 |
| Msa0641390 | Msa0679870 | 0.863784 | 1.944156e-64 | -8.615850e-47 |
| Msa0641390 | Msa0683570 | 0.803400 | 3.550495e-49 | -8.615850e-47 |
| Msa0641390 | Msa0795870 | 0.803958 | 2.718429e-49 | -8.615850e-47 |
| Msa0641390 | Msa0833650 | 0.811011 | 8.665766e-51 | -8.615850e-47 |
| Msa0641390 | Msa0909770 | 0.810345 | 1.207334e-50 | -8.615850e-47 |
| Msa0641390 | Msa1050910 | 0.805688 | 1.182732e-49 | -8.615850e-47 |
| Msa0641390 | Msa1132840 | 0.807239 | 5.570611e-50 | -8.615850e-47 |
| Msa0641390 | Msa1228200 | 0.808181 | 3.513757e-50 | -8.615850e-47 |
| Msa0641390 | Msa1276660 | 0.810511 | 1.111569e-50 | -8.615850e-47 |
| Msa0641390 | Msa1374040 | 0.803186 | 3.931184e-49 | -8.615850e-47 |
| Msa0641390 | Msa1439610 | 0.809377 | 1.949971e-50 | -8.615850e-47 |
| Msa0144360 | Msa0641390 | 0.805263 | 1.452628e-49 | -8.615850e-47 |
| Msa0146260 | Msa0641390 | 0.800677 | 1.288214e-48 | -8.615850e-47 |
| Msa0152400 | Msa0641390 | 0.807268 | 5.492323e-50 | -8.615850e-47 |
| Msa0225480 | Msa0641390 | 0.808991 | 2.359440e-50 | -8.615850e-47 |
| Msa0225860 | Msa0641390 | 0.813724 | 2.214874e-51 | -8.615850e-47 |
| Msa0467430 | Msa0641390 | 0.813390 | 2.622329e-51 | -8.615850e-47 |
| Msa0302170 | Msa0641390 | 0.803436 | 3.489861e-49 | -8.615850e-47 |
| Msa0545340 | Msa0641390 | 0.870491 | 1.402336e-66 | -8.615850e-47 |
| Msa0580370 | Msa0641390 | 0.803243 | 3.826062e-49 | -8.615850e-47 |
| Msa0600930 | Msa0641390 | 0.849067 | 4.101531e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641390 | MtrunA17_Chr4g0026051 | 96.127 | 568 | 21 | 1 | 1 | 568 | 1 | 567 | 0.0 | 1113 |
| Msa0641390 | MtrunA17_Chr2g0321731 | 54.333 | 600 | 217 | 18 | 1 | 567 | 1 | 576 | 5.73e-173 | 504 |
| Msa0641390 | MtrunA17_Chr7g0266861 | 43.542 | 542 | 257 | 18 | 19 | 524 | 4 | 532 | 1.19e-111 | 347 |
| Msa0641390 | MtrunA17_Chr5g0397031 | 30.617 | 405 | 256 | 8 | 45 | 436 | 20 | 412 | 5.77e-42 | 160 |
| Msa0641390 | MtrunA17_Chr3g0098801 | 38.249 | 217 | 129 | 3 | 219 | 435 | 200 | 411 | 8.32e-36 | 142 |
| Msa0641390 | MtrunA17_Chr5g0444041 | 39.524 | 210 | 119 | 2 | 228 | 437 | 201 | 402 | 3.14e-31 | 129 |
| Msa0641390 | MtrunA17_Chr8g0347871 | 26.923 | 416 | 260 | 11 | 42 | 449 | 18 | 397 | 3.06e-28 | 119 |
| Msa0641390 | MtrunA17_Chr2g0288331 | 34.896 | 192 | 117 | 1 | 256 | 439 | 166 | 357 | 4.89e-24 | 105 |
| Msa0641390 | MtrunA17_Chr7g0275251 | 31.140 | 228 | 134 | 6 | 222 | 436 | 134 | 351 | 1.59e-19 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641390 | AT3G11590.1 | 42.857 | 518 | 266 | 9 | 22 | 514 | 15 | 527 | 4.44e-105 | 329 |
| Msa0641390 | AT3G11590.2 | 45.322 | 342 | 176 | 5 | 180 | 514 | 28 | 365 | 2.12e-74 | 244 |
| Msa0641390 | AT5G22310.1 | 36.000 | 500 | 220 | 16 | 23 | 512 | 9 | 418 | 1.32e-57 | 200 |
| Msa0641390 | AT1G50660.1 | 38.073 | 218 | 133 | 1 | 220 | 437 | 213 | 428 | 5.79e-41 | 158 |
| Msa0641390 | AT3G20350.1 | 35.321 | 218 | 139 | 1 | 220 | 437 | 190 | 405 | 9.79e-34 | 136 |
| Msa0641390 | AT5G41620.1 | 28.194 | 454 | 270 | 14 | 96 | 511 | 44 | 479 | 3.04e-23 | 104 |
| Msa0641390 | AT5G41620.4 | 29.870 | 308 | 191 | 7 | 214 | 511 | 70 | 362 | 3.23e-21 | 97.4 |
| Msa0641390 | AT5G41620.3 | 29.870 | 308 | 191 | 7 | 214 | 511 | 70 | 362 | 3.23e-21 | 97.4 |
| Msa0641390 | AT5G41620.2 | 29.870 | 308 | 191 | 7 | 214 | 511 | 28 | 320 | 3.77e-21 | 97.1 |
| Msa0641390 | AT1G64180.1 | 28.682 | 387 | 224 | 15 | 97 | 460 | 61 | 418 | 1.04e-17 | 87.0 |
| Msa0641390 | AT2G46250.1 | 27.513 | 378 | 214 | 13 | 42 | 415 | 13 | 334 | 1.40e-15 | 79.7 |
| Msa0641390 | AT2G46250.2 | 30.583 | 206 | 121 | 5 | 211 | 415 | 59 | 243 | 7.24e-12 | 67.8 |
Find 133 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCTAAGACCTTCTTTA+AGG | 0.119885 | 4_3:+41818502 | None:intergenic |
| CAGATTCAAGAGAGCTATTT+TGG | 0.143793 | 4_3:-41818412 | Msa0641390:CDS |
| GTCCTTCAAACTCTGCATTT+TGG | 0.173945 | 4_3:+41816143 | None:intergenic |
| TTTGAAGGAGTAAAGAAATT+TGG | 0.181272 | 4_3:+41818777 | None:intergenic |
| GAAAGACAACATTTACAATT+TGG | 0.201643 | 4_3:+41815565 | None:intergenic |
| TTCATCCTCTTCATCTTCTT+TGG | 0.203501 | 4_3:-41818445 | Msa0641390:CDS |
| AGAACTAGAGATGAAGAAAA+TGG | 0.210580 | 4_3:-41816235 | Msa0641390:CDS |
| TAGAAATTTACCTCAGAAAT+AGG | 0.224300 | 4_3:+41818054 | None:intergenic |
| ATCTTGACCTTCTTGAATAT+TGG | 0.229109 | 4_3:+41815889 | None:intergenic |
| AATATCCTTCTCTTTATCTT+TGG | 0.244637 | 4_3:+41818269 | None:intergenic |
| CAAATCCCTCTTCTTGAAAC+TGG | 0.309352 | 4_3:+41815916 | None:intergenic |
| TTAAGATTTACATGAAGATT+TGG | 0.314987 | 4_3:+41818596 | None:intergenic |
| CCATATACTCAATGTCGTTC+TGG | 0.316655 | 4_3:+41816719 | None:intergenic |
| CCAGAACGACATTGAGTATA+TGG | 0.324326 | 4_3:-41816719 | Msa0641390:CDS |
| CAGTTTCAAGAAGAGGGATT+TGG | 0.331048 | 4_3:-41815915 | Msa0641390:CDS |
| AATTCCTTCTTGACCCTTGA+AGG | 0.331701 | 4_3:+41818192 | None:intergenic |
| GTTATTCATGTTCAATTCAA+TGG | 0.348123 | 4_3:+41816084 | None:intergenic |
| ATGAACTAGCTAGAGGTATT+GGG | 0.350017 | 4_3:-41816459 | Msa0641390:CDS |
| TGTTACTTAAAGAGTTTAGA+TGG | 0.350879 | 4_3:-41815644 | Msa0641390:three_prime_UTR |
| CTCTCGGAAGTGAGCTTGAT+CGG | 0.359285 | 4_3:-41816792 | Msa0641390:CDS |
| GAACTAGAGATGAAGAAAAT+GGG | 0.372973 | 4_3:-41816234 | Msa0641390:CDS |
| TAGCCTCTGAAAGCTTCATT+TGG | 0.383384 | 4_3:+41816323 | None:intergenic |
| GATGAACTAGCTAGAGGTAT+TGG | 0.384127 | 4_3:-41816460 | Msa0641390:CDS |
| TTATCTCATCCACTTCGTTC+TGG | 0.386985 | 4_3:-41817895 | Msa0641390:CDS |
| TCATGTTCAATTCAATGGAT+TGG | 0.393833 | 4_3:+41816089 | None:intergenic |
| AAATTCTCTTCTTGTCTTTG+AGG | 0.399203 | 4_3:-41815708 | Msa0641390:three_prime_UTR |
| GCTGGTGGAGGAAATGAAAA+AGG | 0.402845 | 4_3:-41816425 | Msa0641390:CDS |
| TACTACATCTTCACCTTCAA+TGG | 0.405871 | 4_3:-41818340 | Msa0641390:CDS |
| AATTCTCTTCTTGTCTTTGA+GGG | 0.407799 | 4_3:-41815707 | Msa0641390:three_prime_UTR |
| ATATGTTCAAAACTTATCAT+TGG | 0.410461 | 4_3:-41815533 | Msa0641390:three_prime_UTR |
| ATCCTTCTCTTTATCTTTGG+AGG | 0.416837 | 4_3:+41818272 | None:intergenic |
| CTAGTCTTCCACAGTGGAAC+TGG | 0.417773 | 4_3:+41818363 | None:intergenic |
| GACATCGAAGAAGATTCTTA+AGG | 0.419711 | 4_3:-41816872 | Msa0641390:CDS |
| AAAACTTGCTGCTTCTTTGT+GGG | 0.423406 | 4_3:-41818232 | Msa0641390:CDS |
| CTTGTATAAGTTTGTCAAGT+AGG | 0.423672 | 4_3:+41816761 | None:intergenic |
| CTTCATGTAAATCTTAAACT+TGG | 0.426325 | 4_3:-41818590 | Msa0641390:five_prime_UTR |
| GAAAACTTGCTGCTTCTTTG+TGG | 0.429207 | 4_3:-41818233 | Msa0641390:CDS |
| GAGAAATTCAATTGAACTAT+CGG | 0.434437 | 4_3:+41815856 | None:intergenic |
| ATCTTATGAGAGAATTCAAT+GGG | 0.436305 | 4_3:-41815966 | Msa0641390:CDS |
| GCTAAGAGCTTGTCAAGATC+AGG | 0.436981 | 4_3:-41818114 | Msa0641390:CDS |
| AGAAAATGGGGATGCTTCTC+CGG | 0.438097 | 4_3:-41816221 | Msa0641390:CDS |
| TAAGAAGATTGCCCTAGAAA+TGG | 0.445287 | 4_3:-41816566 | Msa0641390:CDS |
| TTACAGTGGAGAAGAAGTTA+AGG | 0.447721 | 4_3:-41816609 | Msa0641390:CDS |
| GGTTACAGAAGAACAGTGTC+AGG | 0.450224 | 4_3:-41817919 | Msa0641390:CDS |
| TCTCGGAAGTGAGCTTGATC+GGG | 0.453424 | 4_3:-41816791 | Msa0641390:CDS |
| AGATTTCACACAACAAAATC+AGG | 0.460418 | 4_3:-41818482 | Msa0641390:CDS |
| AAGGGTCAAGAAGGAATTTG+AGG | 0.460502 | 4_3:-41818187 | Msa0641390:CDS |
| AGTGAGCTTGATCGGGTTTG+CGG | 0.462949 | 4_3:-41816784 | Msa0641390:CDS |
| TTCCAAAATGCAGAGTTTGA+AGG | 0.463631 | 4_3:-41816145 | Msa0641390:CDS |
| TCAATGATTTGCATCCTTCA+AGG | 0.464131 | 4_3:-41818206 | Msa0641390:CDS |
| AGGACGGAACTCCAAGCAAT+AGG | 0.467947 | 4_3:-41815808 | Msa0641390:three_prime_UTR |
| TTTGAAATGCAGAAGAATAG+TGG | 0.468349 | 4_3:-41816949 | Msa0641390:intron |
| AACATGAATAACGGCAATAG+AGG | 0.473854 | 4_3:-41816073 | Msa0641390:CDS |
| TTGAATTTCTCTCTTGAGCT+CGG | 0.475732 | 4_3:-41815844 | Msa0641390:exon |
| AGAGGCTAAGTATCAATTTG+AGG | 0.476141 | 4_3:-41816308 | Msa0641390:CDS |
| AGAAATTCAATTGAACTATC+GGG | 0.482943 | 4_3:+41815857 | None:intergenic |
| GAAATTCCAGTTTCAAGAAG+AGG | 0.486758 | 4_3:-41815922 | Msa0641390:CDS |
| CTTGAAATAGACCTATTGCT+TGG | 0.494567 | 4_3:+41815797 | None:intergenic |
| TTGATTATGCAGAGAATGAA+AGG | 0.495962 | 4_3:-41817955 | Msa0641390:intron |
| AGATGGATATGAAAGAAAAG+TGG | 0.497099 | 4_3:+41818689 | None:intergenic |
| TACTTCTAGCTTCCTTCAGA+TGG | 0.502252 | 4_3:+41816902 | None:intergenic |
| AAATTCCAGTTTCAAGAAGA+GGG | 0.503620 | 4_3:-41815921 | Msa0641390:CDS |
| TGAAGATTTGGACATGTGAT+AGG | 0.504000 | 4_3:+41818608 | None:intergenic |
| ATGAAAGGATTTGAAAGTGA+TGG | 0.504945 | 4_3:-41817940 | Msa0641390:CDS |
| TCCTTCTCTTTATCTTTGGA+GGG | 0.505637 | 4_3:+41818273 | None:intergenic |
| ATGTTGATGAAAATTGTTTG+TGG | 0.506418 | 4_3:+41818555 | None:intergenic |
| AGTAAGAGAAATCTTGTGAA+GGG | 0.508236 | 4_3:+41818908 | None:intergenic |
| GAACAAGTTGTTTGATCCAC+CGG | 0.511125 | 4_3:-41815453 | Msa0641390:three_prime_UTR |
| GTGAAGGGGAAGAGTGTAAA+CGG | 0.514536 | 4_3:+41818923 | None:intergenic |
| AAGTATGTGAAGAGCTTGAA+AGG | 0.517210 | 4_3:-41816519 | Msa0641390:CDS |
| TTGGATACCAATATTCAAGA+AGG | 0.521415 | 4_3:-41815896 | Msa0641390:CDS |
| TATCAGTGTTAGTTTAAATG+AGG | 0.522803 | 4_3:-41817860 | Msa0641390:intron |
| AATCTTATGAGAGAATTCAA+TGG | 0.524217 | 4_3:-41815967 | Msa0641390:CDS |
| GCATCCTTCAAGGGTCAAGA+AGG | 0.524583 | 4_3:-41818196 | Msa0641390:CDS |
| CAATGATTTGCATCCTTCAA+GGG | 0.529504 | 4_3:-41818205 | Msa0641390:CDS |
| AGTATGTGAAGAGCTTGAAA+GGG | 0.530337 | 4_3:-41816518 | Msa0641390:CDS |
| ATGGCCCTCACCTTGGCTCT+CGG | 0.531209 | 4_3:-41816808 | Msa0641390:CDS |
| GATGGATATGAAAGAAAAGT+GGG | 0.532349 | 4_3:+41818690 | None:intergenic |
| ATTGAATTGAACATGAATAA+CGG | 0.536556 | 4_3:-41816082 | Msa0641390:CDS |
| ATCGACAATGGCCCTCACCT+TGG | 0.536907 | 4_3:-41816815 | Msa0641390:CDS |
| ATGGAGTTATCCAAGCGAAA+AGG | 0.537795 | 4_3:-41816044 | Msa0641390:CDS |
| ACAAACAATAACCTTAAAGA+AGG | 0.541262 | 4_3:-41818513 | Msa0641390:CDS |
| TCAACTGACAAAGAAAGTAC+AGG | 0.541285 | 4_3:-41815995 | Msa0641390:CDS |
| GTGTGTTATATGATGTTTGA+AGG | 0.541801 | 4_3:+41818762 | None:intergenic |
| TGGGGAAGACAGAGCGCTGG+TGG | 0.546628 | 4_3:-41816440 | Msa0641390:CDS |
| AATAGTGGCAAATGCGCGGT+TGG | 0.558575 | 4_3:-41816934 | Msa0641390:CDS |
| CACTTCCGAGAGCCAAGGTG+AGG | 0.561898 | 4_3:+41816803 | None:intergenic |
| AATGAGAAAGTCTTGTGAGA+GGG | 0.562237 | 4_3:+41818844 | None:intergenic |
| GGTTAAAGTTCGTGAAGAAG+TGG | 0.574473 | 4_3:-41816398 | Msa0641390:CDS |
| TCTAGCCAAAGAAGATGAAG+AGG | 0.574502 | 4_3:+41818440 | None:intergenic |
| GGAAGACAGAGCGCTGGTGG+AGG | 0.574780 | 4_3:-41816437 | Msa0641390:CDS |
| TGTCAAGATCAGGTTTGTTG+AGG | 0.577058 | 4_3:-41818104 | Msa0641390:CDS |
| CCACAGTGGAACTGGTGTGG+TGG | 0.578057 | 4_3:+41818371 | None:intergenic |
| TGAACTAGCTAGAGGTATTG+GGG | 0.580383 | 4_3:-41816458 | Msa0641390:CDS |
| AACTAGAGATGAAGAAAATG+GGG | 0.583537 | 4_3:-41816233 | Msa0641390:CDS |
| GTAAGAGAAATCTTGTGAAG+GGG | 0.584453 | 4_3:+41818909 | None:intergenic |
| AAGTAAGAGAAATCTTGTGA+AGG | 0.593507 | 4_3:+41818907 | None:intergenic |
| TCATCCACTTCGTTCTGGTG+TGG | 0.594511 | 4_3:-41817890 | Msa0641390:CDS |
| GAATGAGAAAGTCTTGTGAG+AGG | 0.597520 | 4_3:+41818843 | None:intergenic |
| CTATTACATGGATCTGACAT+AGG | 0.597551 | 4_3:+41818078 | None:intergenic |
| GTTTGTTTGATTATGACAAG+AGG | 0.599018 | 4_3:+41818530 | None:intergenic |
| CAACTGACAAAGAAAGTACA+GGG | 0.604741 | 4_3:-41815994 | Msa0641390:CDS |
| AGGACATAATGACTCGGATG+AGG | 0.605873 | 4_3:-41816125 | Msa0641390:CDS |
| TGGAGTGAAGAGCCATCTGA+AGG | 0.607672 | 4_3:-41816914 | Msa0641390:CDS |
| ACTTCCGAGAGCCAAGGTGA+GGG | 0.608096 | 4_3:+41816804 | None:intergenic |
| TTGCAGAAGAAAAGGCTGCA+TGG | 0.610809 | 4_3:-41816687 | Msa0641390:CDS |
| AGTTAAGGAAACAAACTGAA+AGG | 0.615070 | 4_3:-41816594 | Msa0641390:CDS |
| CTTCCACAGTGGAACTGGTG+TGG | 0.616603 | 4_3:+41818368 | None:intergenic |
| ACGGCAATAGAGGATCAGAA+TGG | 0.622780 | 4_3:-41816063 | Msa0641390:CDS |
| AAGCTCACTTCCGAGAGCCA+AGG | 0.624529 | 4_3:+41816798 | None:intergenic |
| ACCCTCCAAAGATAAAGAGA+AGG | 0.625511 | 4_3:-41818274 | Msa0641390:CDS |
| TGAGCAAATGAGAAGCTGCA+AGG | 0.629237 | 4_3:-41818163 | Msa0641390:CDS |
| GCGTCCACACCAGAACGAAG+TGG | 0.631718 | 4_3:+41817886 | None:intergenic |
| TATTGGGGAAGACAGAGCGC+TGG | 0.631890 | 4_3:-41816443 | Msa0641390:CDS |
| AGTCCAAATGAAGCTTTCAG+AGG | 0.636988 | 4_3:-41816326 | Msa0641390:CDS |
| TCAGAAATAGGACTATTACA+TGG | 0.637181 | 4_3:+41818066 | None:intergenic |
| ATGTAATAGTCCTATTTCTG+AGG | 0.639498 | 4_3:-41818064 | Msa0641390:intron |
| AGAGAAGCAATCATCGACAA+TGG | 0.653351 | 4_3:-41816827 | Msa0641390:CDS |
| CGGATACAAGACGATGAGGA+CGG | 0.655237 | 4_3:-41815824 | Msa0641390:three_prime_UTR |
| CTTTCACTAGTACACTGCAA+AGG | 0.656661 | 4_3:+41815740 | None:intergenic |
| AGTTATCCAAGCGAAAAGGA+TGG | 0.665163 | 4_3:-41816040 | Msa0641390:CDS |
| ATTTGTGATGAACTAGCTAG+AGG | 0.666500 | 4_3:-41816466 | Msa0641390:CDS |
| AGCTCGGATACAAGACGATG+AGG | 0.668349 | 4_3:-41815828 | Msa0641390:three_prime_UTR |
| GAAGAATAGTGGCAAATGCG+CGG | 0.672467 | 4_3:-41816938 | Msa0641390:CDS |
| TGTAGCTGAAGAGCTTACAG+TGG | 0.676427 | 4_3:-41816623 | Msa0641390:CDS |
| TTACATGGATCTGACATAGG+TGG | 0.679281 | 4_3:+41818081 | None:intergenic |
| GTTTGAAGGACATAATGACT+CGG | 0.680846 | 4_3:-41816131 | Msa0641390:CDS |
| AATTTGAAGCAAGAAGCTGA+AGG | 0.689873 | 4_3:-41815680 | Msa0641390:three_prime_UTR |
| GTTACAGAAGAACAGTGTCA+GGG | 0.691405 | 4_3:-41817918 | Msa0641390:CDS |
| CCACCACACCAGTTCCACTG+TGG | 0.727949 | 4_3:-41818371 | Msa0641390:CDS |
| CTGACAAAGAAAGTACAGGG+AGG | 0.786919 | 4_3:-41815991 | Msa0641390:CDS |
| TCTTATGAGAGAATTCAATG+GGG | 0.795055 | 4_3:-41815965 | Msa0641390:CDS |
| GTAGTACTAGTCTTCCACAG+TGG | 0.798955 | 4_3:+41818357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAGAAAATAAAAAT+TGG | - | chr4_3:41816927-41816946 | Msa0641390:CDS | 10.0% |
| !!! | TAATTTTATTGTAAGAAAAT+AGG | + | chr4_3:41817118-41817137 | None:intergenic | 10.0% |
| !!! | TAATTTAAAATTACATGTTT+TGG | - | chr4_3:41817366-41817385 | Msa0641390:intron | 10.0% |
| !! | GGAACAAAAATAAAAATAAT+AGG | + | chr4_3:41818790-41818809 | None:intergenic | 15.0% |
| !!! | AAAGAAAAAGTGAGAAATTT+TGG | + | chr4_3:41815509-41815528 | None:intergenic | 20.0% |
| !! | TTAAGATTTACATGAAGATT+TGG | + | chr4_3:41815780-41815799 | None:intergenic | 20.0% |
| !!! | TCATTTTGTATTGTGTTATT+TGG | - | chr4_3:41816361-41816380 | Msa0641390:CDS | 20.0% |
| !! | ACATATCTAAATTAGAAATG+TGG | - | chr4_3:41816723-41816742 | Msa0641390:CDS | 20.0% |
| !!! | TTGATGATTATGAAAATGAT+GGG | + | chr4_3:41816953-41816972 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTGTCAAAATTT+GGG | - | chr4_3:41816987-41817006 | Msa0641390:intron | 20.0% |
| !!! | TTTTTTTGTGTCAAAATTTG+GGG | - | chr4_3:41816988-41817007 | Msa0641390:intron | 20.0% |
| !!! | TTAATTTGTAGTAGTTGAAA+AGG | - | chr4_3:41817014-41817033 | Msa0641390:intron | 20.0% |
| !! | TCTCTCAAATAAATATCTAA+CGG | + | chr4_3:41817094-41817113 | None:intergenic | 20.0% |
| !!! | TTAATTTTTAGTAGCTTTTC+AGG | - | chr4_3:41817135-41817154 | Msa0641390:intron | 20.0% |
| !!! | TTTAAAATTACATGTTTTGG+TGG | - | chr4_3:41817369-41817388 | Msa0641390:intron | 20.0% |
| !! | ATTGAATTGAACATGAATAA+CGG | - | chr4_3:41818291-41818310 | Msa0641390:CDS | 20.0% |
| !! | ATATGTTCAAAACTTATCAT+TGG | - | chr4_3:41818840-41818859 | Msa0641390:five_prime_UTR | 20.0% |
| !!! | GAAATTTTGGTCACTTTTTT+GGG | + | chr4_3:41815496-41815515 | None:intergenic | 25.0% |
| !!! | AGAAATTTTGGTCACTTTTT+TGG | + | chr4_3:41815497-41815516 | None:intergenic | 25.0% |
| !!! | TTCCTTTTCTTTCCATTTTT+TGG | - | chr4_3:41815567-41815586 | Msa0641390:three_prime_UTR | 25.0% |
| ! | TTTGAAGGAGTAAAGAAATT+TGG | + | chr4_3:41815599-41815618 | None:intergenic | 25.0% |
| !!! | TCAATGTTGTTTTTGTAAGA+TGG | + | chr4_3:41815704-41815723 | None:intergenic | 25.0% |
| ! | CACAAAAAGTAAGTATATGA+TGG | - | chr4_3:41815730-41815749 | Msa0641390:three_prime_UTR | 25.0% |
| ! | CTTCATGTAAATCTTAAACT+TGG | - | chr4_3:41815783-41815802 | Msa0641390:three_prime_UTR | 25.0% |
| !! | ATGTTGATGAAAATTGTTTG+TGG | + | chr4_3:41815821-41815840 | None:intergenic | 25.0% |
| ! | ACAAACAATAACCTTAAAGA+AGG | - | chr4_3:41815860-41815879 | Msa0641390:CDS | 25.0% |
| ! | AATATCCTTCTCTTTATCTT+TGG | + | chr4_3:41816107-41816126 | None:intergenic | 25.0% |
| ! | TAGAAATTTACCTCAGAAAT+AGG | + | chr4_3:41816322-41816341 | None:intergenic | 25.0% |
| !! | TATCAGTGTTAGTTTAAATG+AGG | - | chr4_3:41816513-41816532 | Msa0641390:CDS | 25.0% |
| !!! | GTTGATGATTATGAAAATGA+TGG | + | chr4_3:41816954-41816973 | None:intergenic | 25.0% |
| ! | CAAAAAAAGGTTGAATAACT+AGG | + | chr4_3:41816976-41816995 | None:intergenic | 25.0% |
| !!! | CCAAATTTTGACACAAAAAA+AGG | + | chr4_3:41816989-41817008 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTGTGTCAAAATT+TGG | - | chr4_3:41816986-41817005 | Msa0641390:intron | 25.0% |
| !!! | TTTTTTGTGTCAAAATTTGG+GGG | - | chr4_3:41816989-41817008 | Msa0641390:intron | 25.0% |
| ! | GTTATTCATGTTCAATTCAA+TGG | + | chr4_3:41818292-41818311 | None:intergenic | 25.0% |
| ! | AATCTTATGAGAGAATTCAA+TGG | - | chr4_3:41818406-41818425 | Msa0641390:CDS | 25.0% |
| ! | ATCTTATGAGAGAATTCAAT+GGG | - | chr4_3:41818407-41818426 | Msa0641390:CDS | 25.0% |
| ! | AGAAATTCAATTGAACTATC+GGG | + | chr4_3:41818519-41818538 | None:intergenic | 25.0% |
| ! | GAGAAATTCAATTGAACTAT+CGG | + | chr4_3:41818520-41818539 | None:intergenic | 25.0% |
| !! | TGTTACTTAAAGAGTTTAGA+TGG | - | chr4_3:41818729-41818748 | Msa0641390:five_prime_UTR | 25.0% |
| ! | GAAAGACAACATTTACAATT+TGG | + | chr4_3:41818811-41818830 | None:intergenic | 25.0% |
| AGTAAGAGAAATCTTGTGAA+GGG | + | chr4_3:41815468-41815487 | None:intergenic | 30.0% | |
| AAGTAAGAGAAATCTTGTGA+AGG | + | chr4_3:41815469-41815488 | None:intergenic | 30.0% | |
| TGCCAAAAAATGGAAAGAAA+AGG | + | chr4_3:41815572-41815591 | None:intergenic | 30.0% | |
| ! | ATTTGGAACATGCCAAAAAA+TGG | + | chr4_3:41815582-41815601 | None:intergenic | 30.0% |
| GTGTGTTATATGATGTTTGA+AGG | + | chr4_3:41815614-41815633 | None:intergenic | 30.0% | |
| GATGGATATGAAAGAAAAGT+GGG | + | chr4_3:41815686-41815705 | None:intergenic | 30.0% | |
| AGATGGATATGAAAGAAAAG+TGG | + | chr4_3:41815687-41815706 | None:intergenic | 30.0% | |
| GTTTGTTTGATTATGACAAG+AGG | + | chr4_3:41815846-41815865 | None:intergenic | 30.0% | |
| AGATTTCACACAACAAAATC+AGG | - | chr4_3:41815891-41815910 | Msa0641390:CDS | 30.0% | |
| ! | TGAGTAGTATTTTCCATTGA+AGG | + | chr4_3:41816049-41816068 | None:intergenic | 30.0% |
| ! | TTTTGTATTCTTCAGCTTCA+GGG | - | chr4_3:41816074-41816093 | Msa0641390:CDS | 30.0% |
| TCAGAAATAGGACTATTACA+TGG | + | chr4_3:41816310-41816329 | None:intergenic | 30.0% | |
| !! | ATGTAATAGTCCTATTTCTG+AGG | - | chr4_3:41816309-41816328 | Msa0641390:CDS | 30.0% |
| TTGATTATGCAGAGAATGAA+AGG | - | chr4_3:41816418-41816437 | Msa0641390:CDS | 30.0% | |
| ATGAAAGGATTTGAAAGTGA+TGG | - | chr4_3:41816433-41816452 | Msa0641390:CDS | 30.0% | |
| ! | GAATTTGAAACCTTGCTTAA+GGG | + | chr4_3:41816805-41816824 | None:intergenic | 30.0% |
| ! | TGAATTTGAAACCTTGCTTA+AGG | + | chr4_3:41816806-41816825 | None:intergenic | 30.0% |
| TTAATCTCTATCAGGAAACT+TGG | + | chr4_3:41816864-41816883 | None:intergenic | 30.0% | |
| TCCTGATAGAGATTAATCAT+TGG | - | chr4_3:41816868-41816887 | Msa0641390:CDS | 30.0% | |
| AATTAATAACCATGACCTCA+TGG | - | chr4_3:41817187-41817206 | Msa0641390:intron | 30.0% | |
| TCAATTGAAAAAGTAACAGC+AGG | - | chr4_3:41817316-41817335 | Msa0641390:intron | 30.0% | |
| TAACAGCAGGCAAAATATAT+AGG | - | chr4_3:41817329-41817348 | Msa0641390:intron | 30.0% | |
| !!! | AAATTACATGTTTTGGTGGT+TGG | - | chr4_3:41817373-41817392 | Msa0641390:intron | 30.0% |
| ! | TTTGAAATGCAGAAGAATAG+TGG | - | chr4_3:41817424-41817443 | Msa0641390:intron | 30.0% |
| CTTGTATAAGTTTGTCAAGT+AGG | + | chr4_3:41817615-41817634 | None:intergenic | 30.0% | |
| ! | CTCTTCAGCTACATTTTTAA+CGG | + | chr4_3:41817743-41817762 | None:intergenic | 30.0% |
| AGTTAAGGAAACAAACTGAA+AGG | - | chr4_3:41817779-41817798 | Msa0641390:intron | 30.0% | |
| ! | TTTTACACTAGCCATTTCTA+GGG | + | chr4_3:41817821-41817840 | None:intergenic | 30.0% |
| AGAACTAGAGATGAAGAAAA+TGG | - | chr4_3:41818138-41818157 | Msa0641390:CDS | 30.0% | |
| GAACTAGAGATGAAGAAAAT+GGG | - | chr4_3:41818139-41818158 | Msa0641390:CDS | 30.0% | |
| AACTAGAGATGAAGAAAATG+GGG | - | chr4_3:41818140-41818159 | Msa0641390:CDS | 30.0% | |
| TCATGTTCAATTCAATGGAT+TGG | + | chr4_3:41818287-41818306 | None:intergenic | 30.0% | |
| TCTTATGAGAGAATTCAATG+GGG | - | chr4_3:41818408-41818427 | Msa0641390:CDS | 30.0% | |
| AAATTCCAGTTTCAAGAAGA+GGG | - | chr4_3:41818452-41818471 | Msa0641390:CDS | 30.0% | |
| TTGGATACCAATATTCAAGA+AGG | - | chr4_3:41818477-41818496 | Msa0641390:CDS | 30.0% | |
| ATCTTGACCTTCTTGAATAT+TGG | + | chr4_3:41818487-41818506 | None:intergenic | 30.0% | |
| AAATTCTCTTCTTGTCTTTG+AGG | - | chr4_3:41818665-41818684 | Msa0641390:five_prime_UTR | 30.0% | |
| AATTCTCTTCTTGTCTTTGA+GGG | - | chr4_3:41818666-41818685 | Msa0641390:five_prime_UTR | 30.0% | |
| GTAAGAGAAATCTTGTGAAG+GGG | + | chr4_3:41815467-41815486 | None:intergenic | 35.0% | |
| ! | AATGAGAAAGTCTTGTGAGA+GGG | + | chr4_3:41815532-41815551 | None:intergenic | 35.0% |
| !! | TTACAGCTTTTTCTCTCTTG+TGG | + | chr4_3:41815636-41815655 | None:intergenic | 35.0% |
| TGAAGATTTGGACATGTGAT+AGG | + | chr4_3:41815768-41815787 | None:intergenic | 35.0% | |
| !! | TCTCTCTAAGACCTTCTTTA+AGG | + | chr4_3:41815874-41815893 | None:intergenic | 35.0% |
| TTCATCCTCTTCATCTTCTT+TGG | - | chr4_3:41815928-41815947 | Msa0641390:CDS | 35.0% | |
| ! | CAGATTCAAGAGAGCTATTT+TGG | - | chr4_3:41815961-41815980 | Msa0641390:CDS | 35.0% |
| TACTACATCTTCACCTTCAA+TGG | - | chr4_3:41816033-41816052 | Msa0641390:CDS | 35.0% | |
| ! | CTTTTGTATTCTTCAGCTTC+AGG | - | chr4_3:41816073-41816092 | Msa0641390:CDS | 35.0% |
| TCCTTCTCTTTATCTTTGGA+GGG | + | chr4_3:41816103-41816122 | None:intergenic | 35.0% | |
| ATCCTTCTCTTTATCTTTGG+AGG | + | chr4_3:41816104-41816123 | None:intergenic | 35.0% | |
| !! | AAAACTTGCTGCTTCTTTGT+GGG | - | chr4_3:41816141-41816160 | Msa0641390:CDS | 35.0% |
| ! | TCAATGATTTGCATCCTTCA+AGG | - | chr4_3:41816167-41816186 | Msa0641390:CDS | 35.0% |
| ! | CAATGATTTGCATCCTTCAA+GGG | - | chr4_3:41816168-41816187 | Msa0641390:CDS | 35.0% |
| CTATTACATGGATCTGACAT+AGG | + | chr4_3:41816298-41816317 | None:intergenic | 35.0% | |
| ATGTGGTGAGCATATCATAT+TGG | - | chr4_3:41816740-41816759 | Msa0641390:CDS | 35.0% | |
| CACTCATACAAGCGTAATAT+TGG | + | chr4_3:41816767-41816786 | None:intergenic | 35.0% | |
| CAATATTACGCTTGTATGAG+TGG | - | chr4_3:41816765-41816784 | Msa0641390:CDS | 35.0% | |
| GCCAATGATTAATCTCTATC+AGG | + | chr4_3:41816872-41816891 | None:intergenic | 35.0% | |
| CAAAGTCGATGAATACTTCA+CGG | - | chr4_3:41816891-41816910 | Msa0641390:CDS | 35.0% | |
| AATACTTCACGGCAATAACA+TGG | - | chr4_3:41816902-41816921 | Msa0641390:CDS | 35.0% | |
| GTAGTAGTTGAAAAGGATGA+TGG | - | chr4_3:41817021-41817040 | Msa0641390:intron | 35.0% | |
| GACATCGAAGAAGATTCTTA+AGG | - | chr4_3:41817501-41817520 | Msa0641390:intron | 35.0% | |
| !! | AAAGCGTTTTGCAGAAGAAA+AGG | - | chr4_3:41817678-41817697 | Msa0641390:intron | 35.0% |
| TTACAGTGGAGAAGAAGTTA+AGG | - | chr4_3:41817764-41817783 | Msa0641390:intron | 35.0% | |
| TAAGAAGATTGCCCTAGAAA+TGG | - | chr4_3:41817807-41817826 | Msa0641390:intron | 35.0% | |
| ! | CTTTTACACTAGCCATTTCT+AGG | + | chr4_3:41817822-41817841 | None:intergenic | 35.0% |
| AAGTATGTGAAGAGCTTGAA+AGG | - | chr4_3:41817854-41817873 | Msa0641390:intron | 35.0% | |
| AGTATGTGAAGAGCTTGAAA+GGG | - | chr4_3:41817855-41817874 | Msa0641390:intron | 35.0% | |
| ATTTGTGATGAACTAGCTAG+AGG | - | chr4_3:41817907-41817926 | Msa0641390:CDS | 35.0% | |
| !! | ATGAACTAGCTAGAGGTATT+GGG | - | chr4_3:41817914-41817933 | Msa0641390:CDS | 35.0% |
| TGAAGAAGTGGAAAAAGAGA+GGG | - | chr4_3:41817987-41818006 | Msa0641390:intron | 35.0% | |
| AGAGGCTAAGTATCAATTTG+AGG | - | chr4_3:41818065-41818084 | Msa0641390:CDS | 35.0% | |
| ! | TCGTTGAATTTTGTAGACTC+CGG | + | chr4_3:41818174-41818193 | None:intergenic | 35.0% |
| TTCCAAAATGCAGAGTTTGA+AGG | - | chr4_3:41818228-41818247 | Msa0641390:CDS | 35.0% | |
| GTTTGAAGGACATAATGACT+CGG | - | chr4_3:41818242-41818261 | Msa0641390:CDS | 35.0% | |
| AACATGAATAACGGCAATAG+AGG | - | chr4_3:41818300-41818319 | Msa0641390:CDS | 35.0% | |
| ! | TCAACTGACAAAGAAAGTAC+AGG | - | chr4_3:41818378-41818397 | Msa0641390:CDS | 35.0% |
| ! | CAACTGACAAAGAAAGTACA+GGG | - | chr4_3:41818379-41818398 | Msa0641390:CDS | 35.0% |
| GAAATTCCAGTTTCAAGAAG+AGG | - | chr4_3:41818451-41818470 | Msa0641390:CDS | 35.0% | |
| TTGAATTTCTCTCTTGAGCT+CGG | - | chr4_3:41818529-41818548 | Msa0641390:CDS | 35.0% | |
| CTTGAAATAGACCTATTGCT+TGG | + | chr4_3:41818579-41818598 | None:intergenic | 35.0% | |
| ! | AATTTGAAGCAAGAAGCTGA+AGG | - | chr4_3:41818693-41818712 | Msa0641390:five_prime_UTR | 35.0% |
| ! | GAATGAGAAAGTCTTGTGAG+AGG | + | chr4_3:41815533-41815552 | None:intergenic | 40.0% |
| TCTAGCCAAAGAAGATGAAG+AGG | + | chr4_3:41815936-41815955 | None:intergenic | 40.0% | |
| !!! | TTCAAGAGAGCTATTTTGGC+TGG | - | chr4_3:41815965-41815984 | Msa0641390:CDS | 40.0% |
| !!! | GCTATTTTGGCTGGAAAGAA+AGG | - | chr4_3:41815974-41815993 | Msa0641390:CDS | 40.0% |
| !!! | ATTTTGGCTGGAAAGAAAGG+AGG | - | chr4_3:41815977-41815996 | Msa0641390:CDS | 40.0% |
| !! | TTTTGGCTGGAAAGAAAGGA+GGG | - | chr4_3:41815978-41815997 | Msa0641390:CDS | 40.0% |
| ACCCTCCAAAGATAAAGAGA+AGG | - | chr4_3:41816099-41816118 | Msa0641390:CDS | 40.0% | |
| !! | GAAAACTTGCTGCTTCTTTG+TGG | - | chr4_3:41816140-41816159 | Msa0641390:CDS | 40.0% |
| AATTCCTTCTTGACCCTTGA+AGG | + | chr4_3:41816184-41816203 | None:intergenic | 40.0% | |
| AAGGGTCAAGAAGGAATTTG+AGG | - | chr4_3:41816186-41816205 | Msa0641390:CDS | 40.0% | |
| !! | TGTCAAGATCAGGTTTGTTG+AGG | - | chr4_3:41816269-41816288 | Msa0641390:CDS | 40.0% |
| TTACATGGATCTGACATAGG+TGG | + | chr4_3:41816295-41816314 | None:intergenic | 40.0% | |
| GTTACAGAAGAACAGTGTCA+GGG | - | chr4_3:41816455-41816474 | Msa0641390:CDS | 40.0% | |
| TTATCTCATCCACTTCGTTC+TGG | - | chr4_3:41816478-41816497 | Msa0641390:CDS | 40.0% | |
| GGTTTCAAATTCAAGTCCTG+TGG | - | chr4_3:41816813-41816832 | Msa0641390:CDS | 40.0% | |
| TCAAATTCAAGTCCTGTGGA+TGG | - | chr4_3:41816817-41816836 | Msa0641390:CDS | 40.0% | |
| TTTAGTGAAGTTCCATCCAC+AGG | + | chr4_3:41816832-41816851 | None:intergenic | 40.0% | |
| TCTCTATCAGGAAACTTGGT+TGG | + | chr4_3:41816860-41816879 | None:intergenic | 40.0% | |
| !! | AGGATGATGGACTGCAATAA+TGG | - | chr4_3:41817034-41817053 | Msa0641390:intron | 40.0% |
| !!! | TAGTAGCTTTTCAGGTGCAT+TGG | - | chr4_3:41817143-41817162 | Msa0641390:intron | 40.0% |
| GATGAGATCAGTGATTTCTG+AGG | + | chr4_3:41817215-41817234 | None:intergenic | 40.0% | |
| !! | TACTTCTAGCTTCCTTCAGA+TGG | + | chr4_3:41817474-41817493 | None:intergenic | 40.0% |
| AGAGAAGCAATCATCGACAA+TGG | - | chr4_3:41817546-41817565 | Msa0641390:intron | 40.0% | |
| CCATATACTCAATGTCGTTC+TGG | + | chr4_3:41817657-41817676 | None:intergenic | 40.0% | |
| CCAGAACGACATTGAGTATA+TGG | - | chr4_3:41817654-41817673 | Msa0641390:intron | 40.0% | |
| ! | GATGAACTAGCTAGAGGTAT+TGG | - | chr4_3:41817913-41817932 | Msa0641390:CDS | 40.0% |
| !! | TGAACTAGCTAGAGGTATTG+GGG | - | chr4_3:41817915-41817934 | Msa0641390:CDS | 40.0% |
| GGAGGAAATGAAAAAGGAGT+CGG | - | chr4_3:41817954-41817973 | Msa0641390:intron | 40.0% | |
| GGTTAAAGTTCGTGAAGAAG+TGG | - | chr4_3:41817975-41817994 | Msa0641390:intron | 40.0% | |
| GTGAAGAAGTGGAAAAAGAG+AGG | - | chr4_3:41817986-41818005 | Msa0641390:intron | 40.0% | |
| AGTCCAAATGAAGCTTTCAG+AGG | - | chr4_3:41818047-41818066 | Msa0641390:intron | 40.0% | |
| ! | TAGCCTCTGAAAGCTTCATT+TGG | + | chr4_3:41818053-41818072 | None:intergenic | 40.0% |
| ! | GTCCTTCAAACTCTGCATTT+TGG | + | chr4_3:41818233-41818252 | None:intergenic | 40.0% |
| ATGGAGTTATCCAAGCGAAA+AGG | - | chr4_3:41818329-41818348 | Msa0641390:CDS | 40.0% | |
| AGTTATCCAAGCGAAAAGGA+TGG | - | chr4_3:41818333-41818352 | Msa0641390:CDS | 40.0% | |
| ! | TTTTGACCATCCTTTTCGCT+TGG | + | chr4_3:41818342-41818361 | None:intergenic | 40.0% |
| CAAATCCCTCTTCTTGAAAC+TGG | + | chr4_3:41818460-41818479 | None:intergenic | 40.0% | |
| CAGTTTCAAGAAGAGGGATT+TGG | - | chr4_3:41818458-41818477 | Msa0641390:CDS | 40.0% | |
| CTTTCACTAGTACACTGCAA+AGG | + | chr4_3:41818636-41818655 | None:intergenic | 40.0% | |
| GAACAAGTTGTTTGATCCAC+CGG | - | chr4_3:41818920-41818939 | Msa0641390:five_prime_UTR | 40.0% | |
| ! | GTGAAGGGGAAGAGTGTAAA+CGG | + | chr4_3:41815453-41815472 | None:intergenic | 45.0% |
| !! | GTAGTACTAGTCTTCCACAG+TGG | + | chr4_3:41816019-41816038 | None:intergenic | 45.0% |
| TGAGCAAATGAGAAGCTGCA+AGG | - | chr4_3:41816210-41816229 | Msa0641390:CDS | 45.0% | |
| GCTAAGAGCTTGTCAAGATC+AGG | - | chr4_3:41816259-41816278 | Msa0641390:CDS | 45.0% | |
| GGTTACAGAAGAACAGTGTC+AGG | - | chr4_3:41816454-41816473 | Msa0641390:CDS | 45.0% | |
| TACGCTTGTATGAGTGGAAC+TGG | - | chr4_3:41816771-41816790 | Msa0641390:CDS | 45.0% | |
| TTGTATGAGTGGAACTGGAC+TGG | - | chr4_3:41816776-41816795 | Msa0641390:CDS | 45.0% | |
| TGTATGAGTGGAACTGGACT+GGG | - | chr4_3:41816777-41816796 | Msa0641390:CDS | 45.0% | |
| GGATGGAACTTCACTAAACG+TGG | - | chr4_3:41816834-41816853 | Msa0641390:CDS | 45.0% | |
| TCTAACGGTCTCAACTCTCA+TGG | + | chr4_3:41817079-41817098 | None:intergenic | 45.0% | |
| !!! | ACATGTTTTGGTGGTTGGCA+AGG | - | chr4_3:41817378-41817397 | Msa0641390:intron | 45.0% |
| GAAGAATAGTGGCAAATGCG+CGG | - | chr4_3:41817435-41817454 | Msa0641390:intron | 45.0% | |
| TTGCAGAAGAAAAGGCTGCA+TGG | - | chr4_3:41817686-41817705 | Msa0641390:intron | 45.0% | |
| TGTAGCTGAAGAGCTTACAG+TGG | - | chr4_3:41817750-41817769 | Msa0641390:intron | 45.0% | |
| GCTGGTGGAGGAAATGAAAA+AGG | - | chr4_3:41817948-41817967 | Msa0641390:intron | 45.0% | |
| AGAAAATGGGGATGCTTCTC+CGG | - | chr4_3:41818152-41818171 | Msa0641390:CDS | 45.0% | |
| ! | AGGACATAATGACTCGGATG+AGG | - | chr4_3:41818248-41818267 | Msa0641390:CDS | 45.0% |
| ACGGCAATAGAGGATCAGAA+TGG | - | chr4_3:41818310-41818329 | Msa0641390:CDS | 45.0% | |
| ! | CTGACAAAGAAAGTACAGGG+AGG | - | chr4_3:41818382-41818401 | Msa0641390:CDS | 45.0% |
| ! | CTAGTCTTCCACAGTGGAAC+TGG | + | chr4_3:41816013-41816032 | None:intergenic | 50.0% |
| GCATCCTTCAAGGGTCAAGA+AGG | - | chr4_3:41816177-41816196 | Msa0641390:CDS | 50.0% | |
| TCATCCACTTCGTTCTGGTG+TGG | - | chr4_3:41816483-41816502 | Msa0641390:CDS | 50.0% | |
| ! | GTGATTTCTGAGGAGCCATG+AGG | + | chr4_3:41817205-41817224 | None:intergenic | 50.0% |
| AATAGTGGCAAATGCGCGGT+TGG | - | chr4_3:41817439-41817458 | Msa0641390:intron | 50.0% | |
| TGGAGTGAAGAGCCATCTGA+AGG | - | chr4_3:41817459-41817478 | Msa0641390:intron | 50.0% | |
| CTCTCGGAAGTGAGCTTGAT+CGG | - | chr4_3:41817581-41817600 | Msa0641390:intron | 50.0% | |
| TCTCGGAAGTGAGCTTGATC+GGG | - | chr4_3:41817582-41817601 | Msa0641390:intron | 50.0% | |
| AGTGAGCTTGATCGGGTTTG+CGG | - | chr4_3:41817589-41817608 | Msa0641390:intron | 50.0% | |
| ! | GTTAGCAGATGTTTTGCGCG+AGG | - | chr4_3:41818020-41818039 | Msa0641390:intron | 50.0% |
| AGCTCGGATACAAGACGATG+AGG | - | chr4_3:41818545-41818564 | Msa0641390:exon | 50.0% | |
| CGGATACAAGACGATGAGGA+CGG | - | chr4_3:41818549-41818568 | Msa0641390:exon | 50.0% | |
| AGGACGGAACTCCAAGCAAT+AGG | - | chr4_3:41818565-41818584 | Msa0641390:five_prime_UTR | 50.0% | |
| CTTCCACAGTGGAACTGGTG+TGG | + | chr4_3:41816008-41816027 | None:intergenic | 55.0% | |
| GGACTGGGATCCCTTAAGCA+AGG | - | chr4_3:41816792-41816811 | Msa0641390:CDS | 55.0% | |
| TCTGAGGAGCCATGAGGTCA+TGG | + | chr4_3:41817199-41817218 | None:intergenic | 55.0% | |
| ATCGACAATGGCCCTCACCT+TGG | - | chr4_3:41817558-41817577 | Msa0641390:intron | 55.0% | |
| ACTTCCGAGAGCCAAGGTGA+GGG | + | chr4_3:41817572-41817591 | None:intergenic | 55.0% | |
| AAGCTCACTTCCGAGAGCCA+AGG | + | chr4_3:41817578-41817597 | None:intergenic | 55.0% | |
| TATTGGGGAAGACAGAGCGC+TGG | - | chr4_3:41817930-41817949 | Msa0641390:CDS | 55.0% | |
| CCACAGTGGAACTGGTGTGG+TGG | + | chr4_3:41816005-41816024 | None:intergenic | 60.0% | |
| CCACCACACCAGTTCCACTG+TGG | - | chr4_3:41816002-41816021 | Msa0641390:CDS | 60.0% | |
| GCGTCCACACCAGAACGAAG+TGG | + | chr4_3:41816490-41816509 | None:intergenic | 60.0% | |
| ! | ATGGCCCTCACCTTGGCTCT+CGG | - | chr4_3:41817565-41817584 | Msa0641390:intron | 60.0% |
| CACTTCCGAGAGCCAAGGTG+AGG | + | chr4_3:41817573-41817592 | None:intergenic | 60.0% | |
| !! | TGGGGAAGACAGAGCGCTGG+TGG | - | chr4_3:41817933-41817952 | Msa0641390:CDS | 65.0% |
| !! | GGAAGACAGAGCGCTGGTGG+AGG | - | chr4_3:41817936-41817955 | Msa0641390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 41815441 | 41818954 | 41815441 | ID=Msa0641390;Name=Msa0641390 |
| chr4_3 | mRNA | 41815441 | 41818954 | 41815441 | ID=Msa0641390-mRNA-1;Parent=Msa0641390;Name=Msa0641390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=398|1|1|1|1|1|3|409|568 |
| chr4_3 | exon | 41815441 | 41816959 | 41815441 | ID=Msa0641390-mRNA-1:exon:9398;Parent=Msa0641390-mRNA-1 |
| chr4_3 | exon | 41817861 | 41817965 | 41817861 | ID=Msa0641390-mRNA-1:exon:9397;Parent=Msa0641390-mRNA-1 |
| chr4_3 | exon | 41818065 | 41818954 | 41818065 | ID=Msa0641390-mRNA-1:exon:9396;Parent=Msa0641390-mRNA-1 |
| chr4_3 | five_prime_UTR | 41818557 | 41818954 | 41818557 | ID=Msa0641390-mRNA-1:five_prime_utr;Parent=Msa0641390-mRNA-1 |
| chr4_3 | CDS | 41818065 | 41818556 | 41818065 | ID=Msa0641390-mRNA-1:cds;Parent=Msa0641390-mRNA-1 |
| chr4_3 | CDS | 41817861 | 41817965 | 41817861 | ID=Msa0641390-mRNA-1:cds;Parent=Msa0641390-mRNA-1 |
| chr4_3 | CDS | 41815850 | 41816959 | 41815850 | ID=Msa0641390-mRNA-1:cds;Parent=Msa0641390-mRNA-1 |
| chr4_3 | three_prime_UTR | 41815441 | 41815849 | 41815441 | ID=Msa0641390-mRNA-1:three_prime_utr;Parent=Msa0641390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
