Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679870 | XP_013455791.1 | 95.781 | 640 | 26 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679870 | sp|Q66GQ2|Y5162_ARATH | 28.194 | 454 | 270 | 14 | 96 | 511 | 44 | 479 | 2.70e-22 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679870 | A0A072UJH3 | 95.781 | 640 | 26 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1207 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0679870 | 0.814083 | 1.845524e-51 | -8.615850e-47 |
| Msa0005890 | Msa0679870 | 0.810515 | 1.109125e-50 | -8.615850e-47 |
| Msa0021500 | Msa0679870 | 0.800705 | 1.271657e-48 | -8.615850e-47 |
| Msa0027820 | Msa0679870 | 0.802620 | 5.144639e-49 | -8.615850e-47 |
| Msa0034810 | Msa0679870 | 0.800806 | 1.212353e-48 | -8.615850e-47 |
| Msa0036870 | Msa0679870 | 0.800858 | 1.183315e-48 | -8.615850e-47 |
| Msa0042610 | Msa0679870 | 0.834713 | 2.555879e-56 | -8.615850e-47 |
| Msa0054690 | Msa0679870 | 0.818567 | 1.832144e-52 | -8.615850e-47 |
| Msa0081520 | Msa0679870 | 0.830361 | 3.066550e-55 | -8.615850e-47 |
| Msa0092790 | Msa0679870 | 0.804925 | 1.709641e-49 | -8.615850e-47 |
| Msa0614000 | Msa0679870 | 0.813041 | 3.128796e-51 | -8.615850e-47 |
| Msa0625630 | Msa0679870 | 0.812158 | 4.879907e-51 | -8.615850e-47 |
| Msa0626450 | Msa0679870 | 0.831178 | 1.933684e-55 | -8.615850e-47 |
| Msa0626490 | Msa0679870 | 0.827158 | 1.825690e-54 | -8.615850e-47 |
| Msa0638480 | Msa0679870 | 0.821941 | 3.088360e-53 | -8.615850e-47 |
| Msa0641390 | Msa0679870 | 0.863784 | 1.944156e-64 | -8.615850e-47 |
| Msa0658640 | Msa0679870 | 0.805663 | 1.197287e-49 | -8.615850e-47 |
| Msa0658880 | Msa0679870 | 0.809021 | 2.324247e-50 | -8.615850e-47 |
| Msa0663300 | Msa0679870 | 0.812378 | 4.368325e-51 | -8.615850e-47 |
| Msa0664060 | Msa0679870 | 0.805644 | 1.208643e-49 | -8.615850e-47 |
| Msa0664600 | Msa0679870 | 0.830002 | 3.752608e-55 | -8.615850e-47 |
| Msa0679870 | Msa0683570 | 0.808622 | 2.829243e-50 | -8.615850e-47 |
| Msa0679870 | Msa0695270 | 0.805382 | 1.371310e-49 | -8.615850e-47 |
| Msa0679870 | Msa0795870 | 0.837607 | 4.705355e-57 | -8.615850e-47 |
| Msa0679870 | Msa0833650 | 0.845659 | 3.538615e-59 | -8.615850e-47 |
| Msa0679870 | Msa0861510 | 0.818419 | 1.979400e-52 | -8.615850e-47 |
| Msa0679870 | Msa0861600 | 0.827658 | 1.385277e-54 | -8.615850e-47 |
| Msa0679870 | Msa0869780 | 0.806395 | 8.400536e-50 | -8.615850e-47 |
| Msa0679870 | Msa0896540 | 0.815294 | 9.954005e-52 | -8.615850e-47 |
| Msa0679870 | Msa1005870 | 0.811270 | 7.613900e-51 | -8.615850e-47 |
| Msa0679870 | Msa1037910 | 0.802271 | 6.073367e-49 | -8.615850e-47 |
| Msa0679870 | Msa1087650 | 0.800276 | 1.555004e-48 | -8.615850e-47 |
| Msa0679870 | Msa1092010 | 0.813026 | 3.151671e-51 | -8.615850e-47 |
| Msa0679870 | Msa1132840 | 0.837882 | 3.998069e-57 | -8.615850e-47 |
| Msa0679870 | Msa1157870 | 0.809795 | 1.585905e-50 | -8.615850e-47 |
| Msa0679870 | Msa1192090 | 0.817682 | 2.904721e-52 | -8.615850e-47 |
| Msa0679870 | Msa1226520 | 0.810296 | 1.237203e-50 | -8.615850e-47 |
| Msa0679870 | Msa1228200 | 0.819187 | 1.325119e-52 | -8.615850e-47 |
| Msa0679870 | Msa1229500 | 0.800738 | 1.251807e-48 | -8.615850e-47 |
| Msa0679870 | Msa1276660 | 0.804658 | 1.943899e-49 | -8.615850e-47 |
| Msa0679870 | Msa1303560 | 0.807507 | 4.888067e-50 | -8.615850e-47 |
| Msa0679870 | Msa1303650 | 0.804322 | 2.284049e-49 | -8.615850e-47 |
| Msa0679870 | Msa1320670 | 0.807711 | 4.422654e-50 | -8.615850e-47 |
| Msa0679870 | Msa1351780 | 0.827623 | 1.412789e-54 | -8.615850e-47 |
| Msa0679870 | Msa1356830 | 0.820801 | 5.661128e-53 | -8.615850e-47 |
| Msa0679870 | Msa1359690 | 0.827469 | 1.538193e-54 | -8.615850e-47 |
| Msa0679870 | Msa1369150 | 0.823375 | 1.432655e-53 | -8.615850e-47 |
| Msa0679870 | Msa1393280 | 0.801506 | 8.719082e-49 | -8.615850e-47 |
| Msa0679870 | Msa1396030 | 0.804424 | 2.174295e-49 | -8.615850e-47 |
| Msa0679870 | Msa1437940 | 0.807328 | 5.332451e-50 | -8.615850e-47 |
| Msa0679870 | Msa1440960 | 0.823477 | 1.356105e-53 | -8.615850e-47 |
| Msa0679870 | Msa1445190 | 0.808870 | 2.504577e-50 | -8.615850e-47 |
| Msa0679870 | Msa1465440 | 0.804884 | 1.743449e-49 | -8.615850e-47 |
| Msa0129940 | Msa0679870 | 0.813720 | 2.219269e-51 | -8.615850e-47 |
| Msa0136650 | Msa0679870 | 0.838009 | 3.708753e-57 | -8.615850e-47 |
| Msa0160830 | Msa0679870 | 0.825675 | 4.118466e-54 | -8.615850e-47 |
| Msa0160860 | Msa0679870 | 0.825251 | 5.190414e-54 | -8.615850e-47 |
| Msa0173890 | Msa0679870 | 0.811421 | 7.060578e-51 | -8.615850e-47 |
| Msa0174450 | Msa0679870 | 0.801200 | 1.007113e-48 | -8.615850e-47 |
| Msa0186010 | Msa0679870 | 0.803274 | 3.768926e-49 | -8.615850e-47 |
| Msa0197420 | Msa0679870 | 0.801946 | 7.082883e-49 | -8.615850e-47 |
| Msa0225860 | Msa0679870 | 0.818039 | 2.413209e-52 | -8.615850e-47 |
| Msa0378720 | Msa0679870 | 0.806024 | 1.005310e-49 | -8.615850e-47 |
| Msa0380620 | Msa0679870 | 0.845587 | 3.699906e-59 | -8.615850e-47 |
| Msa0422850 | Msa0679870 | 0.800056 | 1.723553e-48 | -8.615850e-47 |
| Msa0422930 | Msa0679870 | 0.803525 | 3.344578e-49 | -8.615850e-47 |
| Msa0430260 | Msa0679870 | 0.844721 | 6.342029e-59 | -8.615850e-47 |
| Msa0447370 | Msa0679870 | 0.805034 | 1.621901e-49 | -8.615850e-47 |
| Msa0474730 | Msa0679870 | 0.819953 | 8.856481e-53 | -8.615850e-47 |
| Msa0475790 | Msa0679870 | 0.803368 | 3.603793e-49 | -8.615850e-47 |
| Msa0239190 | Msa0679870 | 0.827421 | 1.579258e-54 | -8.615850e-47 |
| Msa0244640 | Msa0679870 | 0.809212 | 2.115604e-50 | -8.615850e-47 |
| Msa0265850 | Msa0679870 | 0.808088 | 3.677813e-50 | -8.615850e-47 |
| Msa0267110 | Msa0679870 | 0.815033 | 1.137216e-51 | -8.615850e-47 |
| Msa0298470 | Msa0679870 | 0.804087 | 2.556454e-49 | -8.615850e-47 |
| Msa0298500 | Msa0679870 | 0.814485 | 1.503998e-51 | -8.615850e-47 |
| Msa0300270 | Msa0679870 | 0.821409 | 4.100305e-53 | -8.615850e-47 |
| Msa0300320 | Msa0679870 | 0.820023 | 8.539246e-53 | -8.615850e-47 |
| Msa0316810 | Msa0679870 | 0.800101 | 1.687853e-48 | -8.615850e-47 |
| Msa0318700 | Msa0679870 | 0.809260 | 2.066306e-50 | -8.615850e-47 |
| Msa0337700 | Msa0679870 | 0.826543 | 2.561132e-54 | -8.615850e-47 |
| Msa0339500 | Msa0679870 | 0.806977 | 6.329028e-50 | -8.615850e-47 |
| Msa0483100 | Msa0679870 | 0.801549 | 8.545571e-49 | -8.615850e-47 |
| Msa0500380 | Msa0679870 | 0.830865 | 2.307882e-55 | -8.615850e-47 |
| Msa0513160 | Msa0679870 | 0.809938 | 1.477687e-50 | -8.615850e-47 |
| Msa0527550 | Msa0679870 | 0.809912 | 1.496627e-50 | -8.615850e-47 |
| Msa0527860 | Msa0679870 | 0.814852 | 1.247676e-51 | -8.615850e-47 |
| Msa0530780 | Msa0679870 | 0.802848 | 4.618010e-49 | -8.615850e-47 |
| Msa0545340 | Msa0679870 | 0.894179 | 3.144016e-75 | -8.615850e-47 |
| Msa0567170 | Msa0679870 | 0.813312 | 2.727579e-51 | -8.615850e-47 |
| Msa0574890 | Msa0679870 | 0.800201 | 1.610824e-48 | -8.615850e-47 |
| Msa0580370 | Msa0679870 | 0.834591 | 2.743318e-56 | -8.615850e-47 |
| Msa0582450 | Msa0679870 | 0.814872 | 1.235093e-51 | -8.615850e-47 |
| Msa0586190 | Msa0679870 | 0.812135 | 4.936384e-51 | -8.615850e-47 |
| Msa0597790 | Msa0679870 | 0.825795 | 3.857254e-54 | -8.615850e-47 |
| Msa0600930 | Msa0679870 | 0.865427 | 5.952269e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679870 | MtrunA17_Chr4g0026051 | 95.781 | 640 | 26 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1207 |
| Msa0679870 | MtrunA17_Chr2g0321731 | 51.424 | 667 | 259 | 21 | 1 | 628 | 1 | 641 | 5.53e-177 | 517 |
| Msa0679870 | MtrunA17_Chr7g0266861 | 43.358 | 542 | 258 | 17 | 19 | 524 | 4 | 532 | 6.21e-111 | 348 |
| Msa0679870 | MtrunA17_Chr5g0397031 | 31.111 | 405 | 254 | 8 | 45 | 436 | 20 | 412 | 3.89e-43 | 164 |
| Msa0679870 | MtrunA17_Chr3g0098801 | 38.249 | 217 | 129 | 3 | 219 | 435 | 200 | 411 | 1.53e-35 | 142 |
| Msa0679870 | MtrunA17_Chr5g0444041 | 39.524 | 210 | 119 | 2 | 228 | 437 | 201 | 402 | 5.30e-31 | 129 |
| Msa0679870 | MtrunA17_Chr8g0347871 | 26.118 | 425 | 252 | 12 | 42 | 449 | 18 | 397 | 7.72e-28 | 118 |
| Msa0679870 | MtrunA17_Chr2g0288331 | 34.896 | 192 | 117 | 1 | 256 | 439 | 166 | 357 | 6.23e-24 | 105 |
| Msa0679870 | MtrunA17_Chr7g0275251 | 31.140 | 228 | 134 | 6 | 222 | 436 | 134 | 351 | 1.28e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0679870 | AT3G11590.1 | 43.077 | 520 | 262 | 10 | 22 | 514 | 15 | 527 | 1.46e-105 | 333 |
| Msa0679870 | AT3G11590.2 | 45.614 | 342 | 175 | 5 | 180 | 514 | 28 | 365 | 2.00e-74 | 246 |
| Msa0679870 | AT5G22310.1 | 36.400 | 500 | 218 | 17 | 23 | 512 | 9 | 418 | 1.34e-57 | 202 |
| Msa0679870 | AT1G50660.1 | 38.073 | 218 | 133 | 1 | 220 | 437 | 213 | 428 | 1.62e-40 | 158 |
| Msa0679870 | AT3G20350.1 | 41.916 | 167 | 97 | 0 | 271 | 437 | 239 | 405 | 2.22e-33 | 136 |
| Msa0679870 | AT5G41620.1 | 28.194 | 454 | 270 | 14 | 96 | 511 | 44 | 479 | 2.75e-23 | 105 |
| Msa0679870 | AT5G41620.4 | 29.642 | 307 | 193 | 7 | 214 | 511 | 70 | 362 | 2.97e-21 | 98.2 |
| Msa0679870 | AT5G41620.3 | 29.642 | 307 | 193 | 7 | 214 | 511 | 70 | 362 | 2.97e-21 | 98.2 |
| Msa0679870 | AT5G41620.2 | 29.642 | 307 | 193 | 7 | 214 | 511 | 28 | 320 | 5.73e-21 | 97.1 |
| Msa0679870 | AT1G64180.1 | 27.979 | 386 | 228 | 13 | 97 | 460 | 61 | 418 | 2.38e-18 | 89.4 |
| Msa0679870 | AT2G46250.1 | 27.249 | 378 | 215 | 13 | 42 | 415 | 13 | 334 | 4.35e-15 | 78.6 |
| Msa0679870 | AT2G46250.2 | 30.583 | 206 | 121 | 5 | 211 | 415 | 59 | 243 | 1.07e-11 | 67.4 |
Find 132 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCTAAGACCTTCTTTA+AGG | 0.119885 | 4_4:+38411131 | None:intergenic |
| CAGATTCAAGAGAGCTATTT+TGG | 0.143793 | 4_4:-38411041 | Msa0679870:CDS |
| GTCCTTCAAACTCTGCATTT+TGG | 0.173945 | 4_4:+38408753 | None:intergenic |
| TTTGAAGGAGTAAAGAAATT+TGG | 0.181272 | 4_4:+38411409 | None:intergenic |
| GAAAGACAACATTTACAATT+TGG | 0.201643 | 4_4:+38408175 | None:intergenic |
| AGAACTAGAGATGAAGAAAA+TGG | 0.210580 | 4_4:-38408845 | Msa0679870:CDS |
| ATCTTGACCTTCTTGAATAT+TGG | 0.229109 | 4_4:+38408499 | None:intergenic |
| ATCCTTCTCTTTATCTTTGC+AGG | 0.236337 | 4_4:+38410901 | None:intergenic |
| TAGAAATTTACCTCTGAAAT+AGG | 0.248068 | 4_4:+38410683 | None:intergenic |
| TACTACATCTTCACCTTCTA+TGG | 0.268315 | 4_4:-38410969 | Msa0679870:CDS |
| CAAATCCCTCTTCTTGAAAC+TGG | 0.309352 | 4_4:+38408526 | None:intergenic |
| TTAAGATTTACATGAAGATT+TGG | 0.314987 | 4_4:+38411225 | None:intergenic |
| CCATATACTCAATGTCGTTC+TGG | 0.316655 | 4_4:+38409329 | None:intergenic |
| AACTCCTTCTTGACCCTTGA+AGG | 0.318016 | 4_4:+38410821 | None:intergenic |
| CCAGAACGACATTGAGTATA+TGG | 0.324326 | 4_4:-38409329 | Msa0679870:CDS |
| CAGTTTCAAGAAGAGGGATT+TGG | 0.331048 | 4_4:-38408525 | Msa0679870:CDS |
| GTTATTCATGTTCAATTCAA+TGG | 0.348123 | 4_4:+38408694 | None:intergenic |
| ATGAACTAGCTAGAGGTATT+GGG | 0.350017 | 4_4:-38409069 | Msa0679870:CDS |
| ATCCTCATCTTCATCTTCCT+TGG | 0.350860 | 4_4:-38411074 | Msa0679870:CDS |
| CTCTCGGAAGTGAGCTTGAT+CGG | 0.359285 | 4_4:-38409402 | Msa0679870:CDS |
| GAACTAGAGATGAAGAAAAT+GGG | 0.372973 | 4_4:-38408844 | Msa0679870:CDS |
| TAGCCTCTGAAAGCTTCATT+TGG | 0.383384 | 4_4:+38408933 | None:intergenic |
| GATGAACTAGCTAGAGGTAT+TGG | 0.384127 | 4_4:-38409070 | Msa0679870:CDS |
| TTATCTCATCCACTTCGTTC+TGG | 0.386985 | 4_4:-38410523 | Msa0679870:CDS |
| TCATGTTCAATTCAATGGAT+TGG | 0.393833 | 4_4:+38408699 | None:intergenic |
| AAATTCTCTTCTTGTCTTTG+AGG | 0.399203 | 4_4:-38408318 | Msa0679870:CDS |
| GCTGGTGGAGGAAATGAAAA+AGG | 0.402845 | 4_4:-38409035 | Msa0679870:CDS |
| AATTCTCTTCTTGTCTTTGA+GGG | 0.407799 | 4_4:-38408317 | Msa0679870:CDS |
| ATATGTTCAAAACTTATCAT+TGG | 0.410461 | 4_4:-38408143 | Msa0679870:three_prime_UTR |
| CTAGTCTTCCACAGTGGAAC+TGG | 0.417773 | 4_4:+38410992 | None:intergenic |
| GACATCGAAGAAGATTCTTA+AGG | 0.419711 | 4_4:-38409482 | Msa0679870:CDS |
| AAAACTTGCTGCTTCTTTGT+GGG | 0.423406 | 4_4:-38410861 | Msa0679870:CDS |
| CTTCATGTAAATCTTAAACT+TGG | 0.426325 | 4_4:-38411219 | Msa0679870:five_prime_UTR |
| GAAAACTTGCTGCTTCTTTG+TGG | 0.429207 | 4_4:-38410862 | Msa0679870:CDS |
| GAGAAATTCAATTGAACTAT+CGG | 0.431627 | 4_4:+38408466 | None:intergenic |
| ATCTTATGAGAGAATTCAAT+GGG | 0.436305 | 4_4:-38408576 | Msa0679870:CDS |
| CTTGTATCAGTTTGTCAAGT+AGG | 0.436702 | 4_4:+38409371 | None:intergenic |
| GCTAAGAGCTTGTCAAGATC+AGG | 0.436981 | 4_4:-38410743 | Msa0679870:CDS |
| AGAAAATGGGGATGCTTCTC+CGG | 0.438097 | 4_4:-38408831 | Msa0679870:CDS |
| TAAGAAGATTGCCCTAGAAA+TGG | 0.445287 | 4_4:-38409176 | Msa0679870:CDS |
| TTACAGTGGAGAAGAAGTTA+AGG | 0.447721 | 4_4:-38409219 | Msa0679870:CDS |
| GGTTACAGAAGAACAGTGTC+AGG | 0.450224 | 4_4:-38410547 | Msa0679870:CDS |
| TCTCGGAAGTGAGCTTGATC+GGG | 0.453424 | 4_4:-38409401 | Msa0679870:CDS |
| AGATTTCACACAACAAAATC+AGG | 0.460418 | 4_4:-38411111 | Msa0679870:CDS |
| AGTGAGCTTGATCGGGTTTG+CGG | 0.462949 | 4_4:-38409394 | Msa0679870:CDS |
| TTCCAAAATGCAGAGTTTGA+AGG | 0.463631 | 4_4:-38408755 | Msa0679870:CDS |
| TCAATGATTTGCATCCTTCA+AGG | 0.464131 | 4_4:-38410835 | Msa0679870:CDS |
| AGGACGGAACTCCAAGCAAT+AGG | 0.467947 | 4_4:-38408418 | Msa0679870:CDS |
| TTTGAAATGCAGAAGAATAG+TGG | 0.468349 | 4_4:-38409559 | Msa0679870:intron |
| AACATGAATAACGGCAATAG+AGG | 0.473854 | 4_4:-38408683 | Msa0679870:CDS |
| AGAGGCTAAGTATCAATTTG+AGG | 0.476141 | 4_4:-38408918 | Msa0679870:CDS |
| AGAAATTCAATTGAACTATC+GGG | 0.482943 | 4_4:+38408467 | None:intergenic |
| GAAATTCCAGTTTCAAGAAG+AGG | 0.486758 | 4_4:-38408532 | Msa0679870:CDS |
| CTTGAAATAGACCTATTGCT+TGG | 0.494567 | 4_4:+38408407 | None:intergenic |
| TTGATTATGCAGAGAATGAA+AGG | 0.495962 | 4_4:-38410583 | Msa0679870:intron |
| TTGAATTTCTCTCTCGAGCT+CGG | 0.496584 | 4_4:-38408454 | Msa0679870:CDS |
| AAATTCCAGTTTCAAGAAGA+GGG | 0.503620 | 4_4:-38408531 | Msa0679870:CDS |
| TGAAGATTTGGACATGTGAT+AGG | 0.504000 | 4_4:+38411237 | None:intergenic |
| ATGAAAGGATTTGAAAGTGA+TGG | 0.504945 | 4_4:-38410568 | Msa0679870:CDS |
| AGTGAGAGAAATCTTGTGAA+GGG | 0.505110 | 4_4:+38411538 | None:intergenic |
| TCCTTCTCTTTATCTTTGCA+GGG | 0.505637 | 4_4:+38410902 | None:intergenic |
| ATGTTGATGAAAATTGTTTG+TGG | 0.506418 | 4_4:+38411184 | None:intergenic |
| GAACAAGTTGTTTGATCCAC+CGG | 0.511125 | 4_4:-38408063 | Msa0679870:three_prime_UTR |
| GTGAAGGGGAAGAGTGTAAA+CGG | 0.514536 | 4_4:+38411553 | None:intergenic |
| AAGTATGTGAAGAGCTTGAA+AGG | 0.517210 | 4_4:-38409129 | Msa0679870:CDS |
| TTGGATACCAATATTCAAGA+AGG | 0.521415 | 4_4:-38408506 | Msa0679870:CDS |
| AATCTTATGAGAGAATTCAA+TGG | 0.524217 | 4_4:-38408577 | Msa0679870:CDS |
| CAATGATTTGCATCCTTCAA+GGG | 0.529504 | 4_4:-38410834 | Msa0679870:CDS |
| AGTATGTGAAGAGCTTGAAA+GGG | 0.530337 | 4_4:-38409128 | Msa0679870:CDS |
| ATGGCCCTCACCTTGGCTCT+CGG | 0.531209 | 4_4:-38409418 | Msa0679870:CDS |
| ATTGAATTGAACATGAATAA+CGG | 0.536556 | 4_4:-38408692 | Msa0679870:CDS |
| ATCGACAATGGCCCTCACCT+TGG | 0.536907 | 4_4:-38409425 | Msa0679870:CDS |
| GCATCCTTCAAGGGTCAAGA+AGG | 0.536954 | 4_4:-38410825 | Msa0679870:CDS |
| ATGGAGTTATCCAAGCGAAA+AGG | 0.537795 | 4_4:-38408654 | Msa0679870:CDS |
| TACTTCTAGCTTCCTTCAGA+CGG | 0.539069 | 4_4:+38409512 | None:intergenic |
| ACAAACAATAACCTTAAAGA+AGG | 0.541262 | 4_4:-38411142 | Msa0679870:CDS |
| TCAACTGACAAAGAAAGTAC+AGG | 0.541285 | 4_4:-38408605 | Msa0679870:CDS |
| GTGTGTTATATGATGTTTGA+AGG | 0.541801 | 4_4:+38411394 | None:intergenic |
| TGGGGAAGACAGAGCGCTGG+TGG | 0.546628 | 4_4:-38409050 | Msa0679870:CDS |
| TCTGAAATAGGACTGTTACA+TGG | 0.558134 | 4_4:+38410695 | None:intergenic |
| AATAGTGGCAAATGCGCGGT+TGG | 0.558575 | 4_4:-38409544 | Msa0679870:CDS |
| CACTTCCGAGAGCCAAGGTG+AGG | 0.561898 | 4_4:+38409413 | None:intergenic |
| AATGAGAAAGTCTTGTGAGA+GGG | 0.562237 | 4_4:+38411476 | None:intergenic |
| GGTTAAAGTTCGTGAAGAAG+TGG | 0.574473 | 4_4:-38409008 | Msa0679870:CDS |
| GGAAGACAGAGCGCTGGTGG+AGG | 0.574780 | 4_4:-38409047 | Msa0679870:CDS |
| TGTCAAGATCAGGTTTGTTG+AGG | 0.577058 | 4_4:-38410733 | Msa0679870:CDS |
| CCACAGTGGAACTGGTGTGG+TGG | 0.578057 | 4_4:+38411000 | None:intergenic |
| GATGCATATGAAAGAAAAGT+GGG | 0.578265 | 4_4:+38411319 | None:intergenic |
| TATCAGTGACAGTTTAAATG+AGG | 0.579551 | 4_4:-38410488 | Msa0679870:intron |
| TGAACTAGCTAGAGGTATTG+GGG | 0.580383 | 4_4:-38409068 | Msa0679870:CDS |
| TGGAGTGAAGAGCCGTCTGA+AGG | 0.580893 | 4_4:-38409524 | Msa0679870:CDS |
| AAGTGAGAGAAATCTTGTGA+AGG | 0.583309 | 4_4:+38411537 | None:intergenic |
| AACTAGAGATGAAGAAAATG+GGG | 0.583537 | 4_4:-38408843 | Msa0679870:CDS |
| GTGAGAGAAATCTTGTGAAG+GGG | 0.585944 | 4_4:+38411539 | None:intergenic |
| AGATGCATATGAAAGAAAAG+TGG | 0.586741 | 4_4:+38411318 | None:intergenic |
| TGTGTAGTGTTCTCCATAGA+AGG | 0.588791 | 4_4:+38410956 | None:intergenic |
| AGCCAAGGAAGATGAAGATG+AGG | 0.590023 | 4_4:+38411072 | None:intergenic |
| TCATCCACTTCGTTCTGGTG+TGG | 0.594511 | 4_4:-38410518 | Msa0679870:CDS |
| CTGTTACATGGATCTGACAT+AGG | 0.596821 | 4_4:+38410707 | None:intergenic |
| GAATGAGAAAGTCTTGTGAG+AGG | 0.597520 | 4_4:+38411475 | None:intergenic |
| GTTTGTTTGATTATGACAAG+AGG | 0.599018 | 4_4:+38411159 | None:intergenic |
| CAACTGACAAAGAAAGTACA+GGG | 0.604741 | 4_4:-38408604 | Msa0679870:CDS |
| GAATCTGTATCTTCTAGCCA+AGG | 0.604749 | 4_4:+38411057 | None:intergenic |
| AGGACATAATGACTCGGATG+AGG | 0.605873 | 4_4:-38408735 | Msa0679870:CDS |
| ACTTCCGAGAGCCAAGGTGA+GGG | 0.608096 | 4_4:+38409414 | None:intergenic |
| TTGCAGAAGAAAAGGCTGCA+TGG | 0.610809 | 4_4:-38409297 | Msa0679870:CDS |
| AGTTAAGGAAACAAACTGAA+AGG | 0.615070 | 4_4:-38409204 | Msa0679870:CDS |
| CTTCCACAGTGGAACTGGTG+TGG | 0.616603 | 4_4:+38410997 | None:intergenic |
| ACGGCAATAGAGGATCAGAA+TGG | 0.622780 | 4_4:-38408673 | Msa0679870:CDS |
| AAGCTCACTTCCGAGAGCCA+AGG | 0.624529 | 4_4:+38409408 | None:intergenic |
| TGAGCAAATGAGAAGCTGCA+AGG | 0.629237 | 4_4:-38410792 | Msa0679870:CDS |
| GCGTCCACACCAGAACGAAG+TGG | 0.631718 | 4_4:+38410514 | None:intergenic |
| TATTGGGGAAGACAGAGCGC+TGG | 0.631890 | 4_4:-38409053 | Msa0679870:CDS |
| AGTCCAAATGAAGCTTTCAG+AGG | 0.636988 | 4_4:-38408936 | Msa0679870:CDS |
| ATGTAACAGTCCTATTTCAG+AGG | 0.639090 | 4_4:-38410693 | Msa0679870:intron |
| ACCCTGCAAAGATAAAGAGA+AGG | 0.640516 | 4_4:-38410903 | Msa0679870:CDS |
| AGAGAAGCAATCATCGACAA+TGG | 0.653351 | 4_4:-38409437 | Msa0679870:CDS |
| CGGATACAAGACGATGAGGA+CGG | 0.655237 | 4_4:-38408434 | Msa0679870:CDS |
| CTTTCACTAGTACACTGCAA+AGG | 0.656661 | 4_4:+38408350 | None:intergenic |
| AGTTATCCAAGCGAAAAGGA+TGG | 0.665163 | 4_4:-38408650 | Msa0679870:CDS |
| ATTTGTGATGAACTAGCTAG+AGG | 0.666500 | 4_4:-38409076 | Msa0679870:CDS |
| GAAGAATAGTGGCAAATGCG+CGG | 0.672467 | 4_4:-38409548 | Msa0679870:CDS |
| AGCTCGGATACAAGACGATG+AGG | 0.678318 | 4_4:-38408438 | Msa0679870:CDS |
| TTACATGGATCTGACATAGG+TGG | 0.679281 | 4_4:+38410710 | None:intergenic |
| GTTTGAAGGACATAATGACT+CGG | 0.680846 | 4_4:-38408741 | Msa0679870:CDS |
| AATTTGAAGCAAGAAGCTGA+AGG | 0.689873 | 4_4:-38408290 | Msa0679870:CDS |
| GTTACAGAAGAACAGTGTCA+GGG | 0.691405 | 4_4:-38410546 | Msa0679870:CDS |
| CCACCACACCAGTTCCACTG+TGG | 0.727949 | 4_4:-38411000 | Msa0679870:CDS |
| TGTAGCGGAAGAGCTTACAG+TGG | 0.734700 | 4_4:-38409233 | Msa0679870:CDS |
| CTGACAAAGAAAGTACAGGG+AGG | 0.786919 | 4_4:-38408601 | Msa0679870:CDS |
| TCTTATGAGAGAATTCAATG+GGG | 0.795055 | 4_4:-38408575 | Msa0679870:CDS |
| GTAGTACTAGTCTTCCACAG+TGG | 0.798955 | 4_4:+38410986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAATAAAAAAAAA+AGG | + | chr4_4:38409602-38409621 | None:intergenic | 0.0% |
| !! | AACAAAAAGAAAATAAAAAT+TGG | - | chr4_4:38409540-38409559 | Msa0679870:CDS | 10.0% |
| !! | ACAAAAAGAAAATAAAAATT+GGG | - | chr4_4:38409541-38409560 | Msa0679870:CDS | 10.0% |
| !!! | TAATTTTATTGTAAGAAAAT+AGG | + | chr4_4:38409748-38409767 | None:intergenic | 10.0% |
| !!! | TAATTTAAAATTACATGTTT+TGG | - | chr4_4:38409996-38410015 | Msa0679870:intron | 10.0% |
| !!! | TTCATTTTGTATTTTGTTAT+TGG | - | chr4_4:38408972-38408991 | Msa0679870:CDS | 15.0% |
| !!! | TCATTTTGTATTTTGTTATT+GGG | - | chr4_4:38408973-38408992 | Msa0679870:CDS | 15.0% |
| !! | GTAAATTTATCATACTAATT+AGG | - | chr4_4:38409165-38409184 | Msa0679870:CDS | 15.0% |
| !!! | TTTATTTCTTGTCAAAATTT+AGG | - | chr4_4:38409616-38409635 | Msa0679870:intron | 15.0% |
| !!! | TTATTTCTTGTCAAAATTTA+GGG | - | chr4_4:38409617-38409636 | Msa0679870:intron | 15.0% |
| !! | GGAACAAAAATAAAAATAAT+AGG | + | chr4_4:38411420-38411439 | None:intergenic | 15.0% |
| !!! | AAAGAAAAAGTGAGAAATTT+TGG | + | chr4_4:38408117-38408136 | None:intergenic | 20.0% |
| !! | TTAAGATTTACATGAAGATT+TGG | + | chr4_4:38408391-38408410 | None:intergenic | 20.0% |
| !! | TATTTCTTGTCAAAATTTAG+GGG | - | chr4_4:38409618-38409637 | Msa0679870:intron | 20.0% |
| !! | TCTCTCAAATAAATATCTAA+CGG | + | chr4_4:38409724-38409743 | None:intergenic | 20.0% |
| !!! | TTAATTTTTAGTAGCTTTTC+AGG | - | chr4_4:38409765-38409784 | Msa0679870:intron | 20.0% |
| !!! | TTTAAAATTACATGTTTTGG+TGG | - | chr4_4:38409999-38410018 | Msa0679870:intron | 20.0% |
| !! | ATTGAATTGAACATGAATAA+CGG | - | chr4_4:38410921-38410940 | Msa0679870:CDS | 20.0% |
| !! | ATATGTTCAAAACTTATCAT+TGG | - | chr4_4:38411470-38411489 | Msa0679870:five_prime_UTR | 20.0% |
| !!! | TTCCTTTTCTTTCCATTTTT+TGG | - | chr4_4:38408175-38408194 | Msa0679870:three_prime_UTR | 25.0% |
| ! | TTTGAAGGAGTAAAGAAATT+TGG | + | chr4_4:38408207-38408226 | None:intergenic | 25.0% |
| ! | CACAAAAAGTAAGTATATGA+TGG | - | chr4_4:38408341-38408360 | Msa0679870:CDS | 25.0% |
| ! | CTTCATGTAAATCTTAAACT+TGG | - | chr4_4:38408394-38408413 | Msa0679870:CDS | 25.0% |
| !! | ATGTTGATGAAAATTGTTTG+TGG | + | chr4_4:38408432-38408451 | None:intergenic | 25.0% |
| ! | ACAAACAATAACCTTAAAGA+AGG | - | chr4_4:38408471-38408490 | Msa0679870:CDS | 25.0% |
| !!! | TAGAAATTTACCTCTGAAAT+AGG | + | chr4_4:38408933-38408952 | None:intergenic | 25.0% |
| !! | ACTTTTATCTACGACAAATA+CGG | + | chr4_4:38409268-38409287 | None:intergenic | 25.0% |
| ! | ACATATCGAAATTAGAAATG+TGG | - | chr4_4:38409337-38409356 | Msa0679870:CDS | 25.0% |
| ! | AATACTTCACAGTAATAACA+TGG | - | chr4_4:38409515-38409534 | Msa0679870:CDS | 25.0% |
| !! | ATTGATGATCATGAAAATGA+TGG | + | chr4_4:38409567-38409586 | None:intergenic | 25.0% |
| !!! | TTAATTTGTAGCAGTTGAAA+AGG | - | chr4_4:38409643-38409662 | Msa0679870:intron | 25.0% |
| ! | GTTATTCATGTTCAATTCAA+TGG | + | chr4_4:38410922-38410941 | None:intergenic | 25.0% |
| ! | AATCTTATGAGAGAATTCAA+TGG | - | chr4_4:38411036-38411055 | Msa0679870:CDS | 25.0% |
| ! | ATCTTATGAGAGAATTCAAT+GGG | - | chr4_4:38411037-38411056 | Msa0679870:CDS | 25.0% |
| ! | AGAAATTCAATTGAACTATC+GGG | + | chr4_4:38411149-38411168 | None:intergenic | 25.0% |
| ! | GAGAAATTCAATTGAACTAT+CGG | + | chr4_4:38411150-38411169 | None:intergenic | 25.0% |
| ! | GAAAGACAACATTTACAATT+TGG | + | chr4_4:38411441-38411460 | None:intergenic | 25.0% |
| !! | TGAGAAATTTTGGTCACTTT+TGG | + | chr4_4:38408107-38408126 | None:intergenic | 30.0% |
| TGCCAAAAAATGGAAAGAAA+AGG | + | chr4_4:38408180-38408199 | None:intergenic | 30.0% | |
| ! | ATTTGGAACATGCCAAAAAA+TGG | + | chr4_4:38408190-38408209 | None:intergenic | 30.0% |
| GTGTGTTATATGATGTTTGA+AGG | + | chr4_4:38408222-38408241 | None:intergenic | 30.0% | |
| GATGCATATGAAAGAAAAGT+GGG | + | chr4_4:38408297-38408316 | None:intergenic | 30.0% | |
| AGATGCATATGAAAGAAAAG+TGG | + | chr4_4:38408298-38408317 | None:intergenic | 30.0% | |
| GTTTGTTTGATTATGACAAG+AGG | + | chr4_4:38408457-38408476 | None:intergenic | 30.0% | |
| AGATTTCACACAACAAAATC+AGG | - | chr4_4:38408502-38408521 | Msa0679870:CDS | 30.0% | |
| ! | TTTTGTATTCTACAGCTTCA+GGG | - | chr4_4:38408685-38408704 | Msa0679870:CDS | 30.0% |
| TTGATTATGCAGAGAATGAA+AGG | - | chr4_4:38409030-38409049 | Msa0679870:CDS | 30.0% | |
| ATGAAAGGATTTGAAAGTGA+TGG | - | chr4_4:38409045-38409064 | Msa0679870:CDS | 30.0% | |
| TATCAGTGACAGTTTAAATG+AGG | - | chr4_4:38409125-38409144 | Msa0679870:CDS | 30.0% | |
| ATGTGGTGTACATATCATAT+TGG | - | chr4_4:38409354-38409373 | Msa0679870:CDS | 30.0% | |
| ! | GAATTTGAAACCTTGCTTAA+GGG | + | chr4_4:38409419-38409438 | None:intergenic | 30.0% |
| ! | TGAATTTGAAACCTTGCTTA+AGG | + | chr4_4:38409420-38409439 | None:intergenic | 30.0% |
| ATTAATCTCTATCAGGAACT+TGG | + | chr4_4:38409478-38409497 | None:intergenic | 30.0% | |
| TCCTGATAGAGATTAATCAT+TGG | - | chr4_4:38409481-38409500 | Msa0679870:CDS | 30.0% | |
| AATTAATAACCATGACCTCA+TGG | - | chr4_4:38409817-38409836 | Msa0679870:intron | 30.0% | |
| GATGAGATTAGTGATTTATG+AGG | + | chr4_4:38409845-38409864 | None:intergenic | 30.0% | |
| TCAATTGAAAAAGTAACAGC+AGG | - | chr4_4:38409946-38409965 | Msa0679870:intron | 30.0% | |
| TAACAGCAGGCAAAATATAT+AGG | - | chr4_4:38409959-38409978 | Msa0679870:intron | 30.0% | |
| !!! | AAATTACATGTTTTGGTGGT+TGG | - | chr4_4:38410003-38410022 | Msa0679870:intron | 30.0% |
| ! | TTTGAAATGCAGAAGAATAG+TGG | - | chr4_4:38410054-38410073 | Msa0679870:intron | 30.0% |
| ! | AAAACGTTTTGCAGAAGAAA+AGG | - | chr4_4:38410308-38410327 | Msa0679870:intron | 30.0% |
| AGTTAAGGAAACAAACTGAA+AGG | - | chr4_4:38410409-38410428 | Msa0679870:intron | 30.0% | |
| ! | TTTTACACTAGCCATTTCTA+GGG | + | chr4_4:38410451-38410470 | None:intergenic | 30.0% |
| AGAACTAGAGATGAAGAAAA+TGG | - | chr4_4:38410768-38410787 | Msa0679870:CDS | 30.0% | |
| GAACTAGAGATGAAGAAAAT+GGG | - | chr4_4:38410769-38410788 | Msa0679870:CDS | 30.0% | |
| AACTAGAGATGAAGAAAATG+GGG | - | chr4_4:38410770-38410789 | Msa0679870:CDS | 30.0% | |
| TCATGTTCAATTCAATGGAT+TGG | + | chr4_4:38410917-38410936 | None:intergenic | 30.0% | |
| TCTTATGAGAGAATTCAATG+GGG | - | chr4_4:38411038-38411057 | Msa0679870:CDS | 30.0% | |
| AAATTCCAGTTTCAAGAAGA+GGG | - | chr4_4:38411082-38411101 | Msa0679870:CDS | 30.0% | |
| TTGGATACCAATATTCAAGA+AGG | - | chr4_4:38411107-38411126 | Msa0679870:CDS | 30.0% | |
| ATCTTGACCTTCTTGAATAT+TGG | + | chr4_4:38411117-38411136 | None:intergenic | 30.0% | |
| AAATTCTCTTCTTGTCTTTG+AGG | - | chr4_4:38411295-38411314 | Msa0679870:five_prime_UTR | 30.0% | |
| AATTCTCTTCTTGTCTTTGA+GGG | - | chr4_4:38411296-38411315 | Msa0679870:five_prime_UTR | 30.0% | |
| AGTGAGAGAAATCTTGTGAA+GGG | + | chr4_4:38408078-38408097 | None:intergenic | 35.0% | |
| AAGTGAGAGAAATCTTGTGA+AGG | + | chr4_4:38408079-38408098 | None:intergenic | 35.0% | |
| ! | AATGAGAAAGTCTTGTGAGA+GGG | + | chr4_4:38408140-38408159 | None:intergenic | 35.0% |
| !! | TTACAGCTTTTTCTCTCTTG+TGG | + | chr4_4:38408244-38408263 | None:intergenic | 35.0% |
| TGAAGATTTGGACATGTGAT+AGG | + | chr4_4:38408379-38408398 | None:intergenic | 35.0% | |
| !! | TCTCTCTAAGACCTTCTTTA+AGG | + | chr4_4:38408485-38408504 | None:intergenic | 35.0% |
| ! | CAGATTCAAGAGAGCTATTT+TGG | - | chr4_4:38408572-38408591 | Msa0679870:CDS | 35.0% |
| TACTACATCTTCACCTTCTA+TGG | - | chr4_4:38408644-38408663 | Msa0679870:CDS | 35.0% | |
| ! | CTTTTGTATTCTACAGCTTC+AGG | - | chr4_4:38408684-38408703 | Msa0679870:CDS | 35.0% |
| TCCTTCTCTTTATCTTTGCA+GGG | + | chr4_4:38408714-38408733 | None:intergenic | 35.0% | |
| ATCCTTCTCTTTATCTTTGC+AGG | + | chr4_4:38408715-38408734 | None:intergenic | 35.0% | |
| !! | AAAACTTGCTGCTTCTTTGT+GGG | - | chr4_4:38408752-38408771 | Msa0679870:CDS | 35.0% |
| ! | TCAATGATTTGCATCCTTCA+AGG | - | chr4_4:38408778-38408797 | Msa0679870:CDS | 35.0% |
| ! | CAATGATTTGCATCCTTCAA+GGG | - | chr4_4:38408779-38408798 | Msa0679870:CDS | 35.0% |
| ! | TCTGAAATAGGACTGTTACA+TGG | + | chr4_4:38408921-38408940 | None:intergenic | 35.0% |
| ATGTAACAGTCCTATTTCAG+AGG | - | chr4_4:38408920-38408939 | Msa0679870:CDS | 35.0% | |
| GAGATAGAGATAAGCACATA+CGG | - | chr4_4:38409294-38409313 | Msa0679870:CDS | 35.0% | |
| GCCAATGATTAATCTCTATC+AGG | + | chr4_4:38409485-38409504 | None:intergenic | 35.0% | |
| !! | AGGAAGATGGATTGCAATAA+TGG | - | chr4_4:38409663-38409682 | Msa0679870:intron | 35.0% |
| !!! | TAGTAGCTTTTCAGGTACAT+TGG | - | chr4_4:38409773-38409792 | Msa0679870:intron | 35.0% |
| GACATCGAAGAAGATTCTTA+AGG | - | chr4_4:38410131-38410150 | Msa0679870:intron | 35.0% | |
| CTTGTATCAGTTTGTCAAGT+AGG | + | chr4_4:38410245-38410264 | None:intergenic | 35.0% | |
| ! | CTCTTCCGCTACATTTTTAA+CGG | + | chr4_4:38410373-38410392 | None:intergenic | 35.0% |
| TTACAGTGGAGAAGAAGTTA+AGG | - | chr4_4:38410394-38410413 | Msa0679870:intron | 35.0% | |
| TAAGAAGATTGCCCTAGAAA+TGG | - | chr4_4:38410437-38410456 | Msa0679870:intron | 35.0% | |
| ! | CTTTTACACTAGCCATTTCT+AGG | + | chr4_4:38410452-38410471 | None:intergenic | 35.0% |
| AAGTATGTGAAGAGCTTGAA+AGG | - | chr4_4:38410484-38410503 | Msa0679870:intron | 35.0% | |
| AGTATGTGAAGAGCTTGAAA+GGG | - | chr4_4:38410485-38410504 | Msa0679870:intron | 35.0% | |
| ATTTGTGATGAACTAGCTAG+AGG | - | chr4_4:38410537-38410556 | Msa0679870:CDS | 35.0% | |
| !! | ATGAACTAGCTAGAGGTATT+GGG | - | chr4_4:38410544-38410563 | Msa0679870:CDS | 35.0% |
| TGAAGAAGTGGAAAAAGAGA+GGG | - | chr4_4:38410617-38410636 | Msa0679870:intron | 35.0% | |
| AGAGGCTAAGTATCAATTTG+AGG | - | chr4_4:38410695-38410714 | Msa0679870:CDS | 35.0% | |
| ! | TCGTTGAATTTTGTAGACTC+CGG | + | chr4_4:38410804-38410823 | None:intergenic | 35.0% |
| TTCCAAAATGCAGAGTTTGA+AGG | - | chr4_4:38410858-38410877 | Msa0679870:CDS | 35.0% | |
| GTTTGAAGGACATAATGACT+CGG | - | chr4_4:38410872-38410891 | Msa0679870:CDS | 35.0% | |
| AACATGAATAACGGCAATAG+AGG | - | chr4_4:38410930-38410949 | Msa0679870:CDS | 35.0% | |
| ! | TCAACTGACAAAGAAAGTAC+AGG | - | chr4_4:38411008-38411027 | Msa0679870:CDS | 35.0% |
| ! | CAACTGACAAAGAAAGTACA+GGG | - | chr4_4:38411009-38411028 | Msa0679870:CDS | 35.0% |
| GAAATTCCAGTTTCAAGAAG+AGG | - | chr4_4:38411081-38411100 | Msa0679870:CDS | 35.0% | |
| CTTGAAATAGACCTATTGCT+TGG | + | chr4_4:38411209-38411228 | None:intergenic | 35.0% | |
| ! | AATTTGAAGCAAGAAGCTGA+AGG | - | chr4_4:38411323-38411342 | Msa0679870:five_prime_UTR | 35.0% |
| GTGAGAGAAATCTTGTGAAG+GGG | + | chr4_4:38408077-38408096 | None:intergenic | 40.0% | |
| ! | GAATGAGAAAGTCTTGTGAG+AGG | + | chr4_4:38408141-38408160 | None:intergenic | 40.0% |
| ATCCTCATCTTCATCTTCCT+TGG | - | chr4_4:38408539-38408558 | Msa0679870:CDS | 40.0% | |
| GAATCTGTATCTTCTAGCCA+AGG | + | chr4_4:38408559-38408578 | None:intergenic | 40.0% | |
| !!! | TTCAAGAGAGCTATTTTGGC+TGG | - | chr4_4:38408576-38408595 | Msa0679870:CDS | 40.0% |
| !!! | GCTATTTTGGCTGGAAAGAA+AGG | - | chr4_4:38408585-38408604 | Msa0679870:CDS | 40.0% |
| !!! | ATTTTGGCTGGAAAGAAAGG+AGG | - | chr4_4:38408588-38408607 | Msa0679870:CDS | 40.0% |
| !! | TTTTGGCTGGAAAGAAAGGA+GGG | - | chr4_4:38408589-38408608 | Msa0679870:CDS | 40.0% |
| TGTGTAGTGTTCTCCATAGA+AGG | + | chr4_4:38408660-38408679 | None:intergenic | 40.0% | |
| ACCCTGCAAAGATAAAGAGA+AGG | - | chr4_4:38408710-38408729 | Msa0679870:CDS | 40.0% | |
| !! | GAAAACTTGCTGCTTCTTTG+TGG | - | chr4_4:38408751-38408770 | Msa0679870:CDS | 40.0% |
| !! | TGTCAAGATCAGGTTTGTTG+AGG | - | chr4_4:38408880-38408899 | Msa0679870:CDS | 40.0% |
| TTACATGGATCTGACATAGG+TGG | + | chr4_4:38408906-38408925 | None:intergenic | 40.0% | |
| CTGTTACATGGATCTGACAT+AGG | + | chr4_4:38408909-38408928 | None:intergenic | 40.0% | |
| GTTACAGAAGAACAGTGTCA+GGG | - | chr4_4:38409067-38409086 | Msa0679870:CDS | 40.0% | |
| TTATCTCATCCACTTCGTTC+TGG | - | chr4_4:38409090-38409109 | Msa0679870:CDS | 40.0% | |
| GGTTTCAAATTCAAGTCCTG+TGG | - | chr4_4:38409427-38409446 | Msa0679870:CDS | 40.0% | |
| TCAAATTCAAGTCCTGTGGA+TGG | - | chr4_4:38409431-38409450 | Msa0679870:CDS | 40.0% | |
| ATCTCTATCAGGAACTTGGT+TGG | + | chr4_4:38409474-38409493 | None:intergenic | 40.0% | |
| GTAGCAGTTGAAAAGGAAGA+TGG | - | chr4_4:38409650-38409669 | Msa0679870:intron | 40.0% | |
| !!! | ACATGTTTTGGTGGTTGGAA+AGG | - | chr4_4:38410008-38410027 | Msa0679870:intron | 40.0% |
| !! | TACTTCTAGCTTCCTTCAGA+CGG | + | chr4_4:38410104-38410123 | None:intergenic | 40.0% |
| AGAGAAGCAATCATCGACAA+TGG | - | chr4_4:38410176-38410195 | Msa0679870:intron | 40.0% | |
| CCATATACTCAATGTCGTTC+TGG | + | chr4_4:38410287-38410306 | None:intergenic | 40.0% | |
| CCAGAACGACATTGAGTATA+TGG | - | chr4_4:38410284-38410303 | Msa0679870:intron | 40.0% | |
| CGATGCCGTTAAAAATGTAG+CGG | - | chr4_4:38410365-38410384 | Msa0679870:intron | 40.0% | |
| ! | GATGAACTAGCTAGAGGTAT+TGG | - | chr4_4:38410543-38410562 | Msa0679870:CDS | 40.0% |
| !! | TGAACTAGCTAGAGGTATTG+GGG | - | chr4_4:38410545-38410564 | Msa0679870:CDS | 40.0% |
| GGAGGAAATGAAAAAGGAGT+CGG | - | chr4_4:38410584-38410603 | Msa0679870:intron | 40.0% | |
| GGTTAAAGTTCGTGAAGAAG+TGG | - | chr4_4:38410605-38410624 | Msa0679870:intron | 40.0% | |
| GTGAAGAAGTGGAAAAAGAG+AGG | - | chr4_4:38410616-38410635 | Msa0679870:intron | 40.0% | |
| AGTCCAAATGAAGCTTTCAG+AGG | - | chr4_4:38410677-38410696 | Msa0679870:intron | 40.0% | |
| ! | TAGCCTCTGAAAGCTTCATT+TGG | + | chr4_4:38410683-38410702 | None:intergenic | 40.0% |
| ! | GTCCTTCAAACTCTGCATTT+TGG | + | chr4_4:38410863-38410882 | None:intergenic | 40.0% |
| ATGGAGTTATCCAAGCGAAA+AGG | - | chr4_4:38410959-38410978 | Msa0679870:CDS | 40.0% | |
| AGTTATCCAAGCGAAAAGGA+TGG | - | chr4_4:38410963-38410982 | Msa0679870:CDS | 40.0% | |
| ! | TTTTGACCATCCTTTTCGCT+TGG | + | chr4_4:38410972-38410991 | None:intergenic | 40.0% |
| CAAATCCCTCTTCTTGAAAC+TGG | + | chr4_4:38411090-38411109 | None:intergenic | 40.0% | |
| CAGTTTCAAGAAGAGGGATT+TGG | - | chr4_4:38411088-38411107 | Msa0679870:CDS | 40.0% | |
| TTGAATTTCTCTCTCGAGCT+CGG | - | chr4_4:38411159-38411178 | Msa0679870:CDS | 40.0% | |
| CTTTCACTAGTACACTGCAA+AGG | + | chr4_4:38411266-38411285 | None:intergenic | 40.0% | |
| GAACAAGTTGTTTGATCCAC+CGG | - | chr4_4:38411550-38411569 | Msa0679870:five_prime_UTR | 40.0% | |
| ! | GTGAAGGGGAAGAGTGTAAA+CGG | + | chr4_4:38408063-38408082 | None:intergenic | 45.0% |
| AGCCAAGGAAGATGAAGATG+AGG | + | chr4_4:38408544-38408563 | None:intergenic | 45.0% | |
| !! | GTAGTACTAGTCTTCCACAG+TGG | + | chr4_4:38408630-38408649 | None:intergenic | 45.0% |
| AACTCCTTCTTGACCCTTGA+AGG | + | chr4_4:38408795-38408814 | None:intergenic | 45.0% | |
| TGAGCAAATGAGAAGCTGCA+AGG | - | chr4_4:38408821-38408840 | Msa0679870:CDS | 45.0% | |
| GCTAAGAGCTTGTCAAGATC+AGG | - | chr4_4:38408870-38408889 | Msa0679870:CDS | 45.0% | |
| GGTTACAGAAGAACAGTGTC+AGG | - | chr4_4:38409066-38409085 | Msa0679870:CDS | 45.0% | |
| CACTCGTACAAGCGTAATGT+TGG | + | chr4_4:38409381-38409400 | None:intergenic | 45.0% | |
| CAACATTACGCTTGTACGAG+TGG | - | chr4_4:38409379-38409398 | Msa0679870:CDS | 45.0% | |
| TTGTACGAGTGGAACTAGAC+AGG | - | chr4_4:38409390-38409409 | Msa0679870:CDS | 45.0% | |
| TGTACGAGTGGAACTAGACA+GGG | - | chr4_4:38409391-38409410 | Msa0679870:CDS | 45.0% | |
| TTTAGTGGAGTTCCATCCAC+AGG | + | chr4_4:38409446-38409465 | None:intergenic | 45.0% | |
| CTAACGGTCTCAAACTCTCA+TGG | + | chr4_4:38409708-38409727 | None:intergenic | 45.0% | |
| GTGATTTATGAGGAGCCATG+AGG | + | chr4_4:38409835-38409854 | None:intergenic | 45.0% | |
| GAAGAATAGTGGCAAATGCG+CGG | - | chr4_4:38410065-38410084 | Msa0679870:intron | 45.0% | |
| TTGCAGAAGAAAAGGCTGCA+TGG | - | chr4_4:38410316-38410335 | Msa0679870:intron | 45.0% | |
| GCTGGTGGAGGAAATGAAAA+AGG | - | chr4_4:38410578-38410597 | Msa0679870:intron | 45.0% | |
| AGAAAATGGGGATGCTTCTC+CGG | - | chr4_4:38410782-38410801 | Msa0679870:CDS | 45.0% | |
| ! | AGGACATAATGACTCGGATG+AGG | - | chr4_4:38410878-38410897 | Msa0679870:CDS | 45.0% |
| ACGGCAATAGAGGATCAGAA+TGG | - | chr4_4:38410940-38410959 | Msa0679870:CDS | 45.0% | |
| ! | CTGACAAAGAAAGTACAGGG+AGG | - | chr4_4:38411012-38411031 | Msa0679870:CDS | 45.0% |
| ! | CTAGTCTTCCACAGTGGAAC+TGG | + | chr4_4:38408624-38408643 | None:intergenic | 50.0% |
| GCATCCTTCAAGGGTCAAGA+AGG | - | chr4_4:38408788-38408807 | Msa0679870:CDS | 50.0% | |
| TCATCCACTTCGTTCTGGTG+TGG | - | chr4_4:38409095-38409114 | Msa0679870:CDS | 50.0% | |
| AGACAGGGATCCCTTAAGCA+AGG | - | chr4_4:38409406-38409425 | Msa0679870:CDS | 50.0% | |
| GGATGGAACTCCACTAAACG+TGG | - | chr4_4:38409448-38409467 | Msa0679870:CDS | 50.0% | |
| ! | ACTTGGTTGGCCACGTTTAG+TGG | + | chr4_4:38409461-38409480 | None:intergenic | 50.0% |
| TATGAGGAGCCATGAGGTCA+TGG | + | chr4_4:38409829-38409848 | None:intergenic | 50.0% | |
| AATAGTGGCAAATGCGCGGT+TGG | - | chr4_4:38410069-38410088 | Msa0679870:intron | 50.0% | |
| CTCTCGGAAGTGAGCTTGAT+CGG | - | chr4_4:38410211-38410230 | Msa0679870:intron | 50.0% | |
| TCTCGGAAGTGAGCTTGATC+GGG | - | chr4_4:38410212-38410231 | Msa0679870:intron | 50.0% | |
| AGTGAGCTTGATCGGGTTTG+CGG | - | chr4_4:38410219-38410238 | Msa0679870:intron | 50.0% | |
| ! | TGTAGCGGAAGAGCTTACAG+TGG | - | chr4_4:38410380-38410399 | Msa0679870:intron | 50.0% |
| ! | GTTAGCAGATGTTTTGCGCG+AGG | - | chr4_4:38410650-38410669 | Msa0679870:intron | 50.0% |
| AGCTCGGATACAAGACGATG+AGG | - | chr4_4:38411175-38411194 | Msa0679870:exon | 50.0% | |
| CGGATACAAGACGATGAGGA+CGG | - | chr4_4:38411179-38411198 | Msa0679870:exon | 50.0% | |
| AGGACGGAACTCCAAGCAAT+AGG | - | chr4_4:38411195-38411214 | Msa0679870:five_prime_UTR | 50.0% | |
| CTTCCACAGTGGAACTGGTG+TGG | + | chr4_4:38408619-38408638 | None:intergenic | 55.0% | |
| TGGAGTGAAGAGCCGTCTGA+AGG | - | chr4_4:38410089-38410108 | Msa0679870:intron | 55.0% | |
| ATCGACAATGGCCCTCACCT+TGG | - | chr4_4:38410188-38410207 | Msa0679870:intron | 55.0% | |
| ACTTCCGAGAGCCAAGGTGA+GGG | + | chr4_4:38410202-38410221 | None:intergenic | 55.0% | |
| AAGCTCACTTCCGAGAGCCA+AGG | + | chr4_4:38410208-38410227 | None:intergenic | 55.0% | |
| TATTGGGGAAGACAGAGCGC+TGG | - | chr4_4:38410560-38410579 | Msa0679870:CDS | 55.0% | |
| CCACAGTGGAACTGGTGTGG+TGG | + | chr4_4:38408616-38408635 | None:intergenic | 60.0% | |
| CCACCACACCAGTTCCACTG+TGG | - | chr4_4:38408613-38408632 | Msa0679870:CDS | 60.0% | |
| GCGTCCACACCAGAACGAAG+TGG | + | chr4_4:38409102-38409121 | None:intergenic | 60.0% | |
| ! | ATGGCCCTCACCTTGGCTCT+CGG | - | chr4_4:38410195-38410214 | Msa0679870:intron | 60.0% |
| CACTTCCGAGAGCCAAGGTG+AGG | + | chr4_4:38410203-38410222 | None:intergenic | 60.0% | |
| !! | TGGGGAAGACAGAGCGCTGG+TGG | - | chr4_4:38410563-38410582 | Msa0679870:CDS | 65.0% |
| !! | GGAAGACAGAGCGCTGGTGG+AGG | - | chr4_4:38410566-38410585 | Msa0679870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 38408051 | 38411584 | 38408051 | ID=Msa0679870;Name=Msa0679870 |
| chr4_4 | mRNA | 38408051 | 38411584 | 38408051 | ID=Msa0679870-mRNA-1;Parent=Msa0679870;Name=Msa0679870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=399|1|1|1|1|1|3|193|640 |
| chr4_4 | exon | 38408051 | 38409569 | 38408051 | ID=Msa0679870-mRNA-1:exon:9033;Parent=Msa0679870-mRNA-1 |
| chr4_4 | exon | 38410489 | 38410593 | 38410489 | ID=Msa0679870-mRNA-1:exon:9032;Parent=Msa0679870-mRNA-1 |
| chr4_4 | exon | 38410694 | 38411584 | 38410694 | ID=Msa0679870-mRNA-1:exon:9031;Parent=Msa0679870-mRNA-1 |
| chr4_4 | five_prime_UTR | 38411186 | 38411584 | 38411186 | ID=Msa0679870-mRNA-1:five_prime_utr;Parent=Msa0679870-mRNA-1 |
| chr4_4 | CDS | 38410694 | 38411185 | 38410694 | ID=Msa0679870-mRNA-1:cds;Parent=Msa0679870-mRNA-1 |
| chr4_4 | CDS | 38410489 | 38410593 | 38410489 | ID=Msa0679870-mRNA-1:cds;Parent=Msa0679870-mRNA-1 |
| chr4_4 | CDS | 38408244 | 38409569 | 38408244 | ID=Msa0679870-mRNA-1:cds;Parent=Msa0679870-mRNA-1 |
| chr4_4 | three_prime_UTR | 38408051 | 38408243 | 38408051 | ID=Msa0679870-mRNA-1:three_prime_utr;Parent=Msa0679870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
