Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545340 | XP_013455791.1 | 95.469 | 640 | 28 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545340 | sp|Q66GQ2|Y5162_ARATH | 28.791 | 455 | 266 | 15 | 96 | 511 | 44 | 479 | 3.31e-23 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545340 | A0A072UJH3 | 95.469 | 640 | 28 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0545340 | 0.813007 | 3.182922e-51 | -8.615850e-47 |
| Msa0005890 | Msa0545340 | 0.816948 | 4.250673e-52 | -8.615850e-47 |
| Msa0021500 | Msa0545340 | 0.812078 | 5.080151e-51 | -8.615850e-47 |
| Msa0028420 | Msa0545340 | 0.807738 | 4.364459e-50 | -8.615850e-47 |
| Msa0035120 | Msa0545340 | 0.802759 | 4.817755e-49 | -8.615850e-47 |
| Msa0042610 | Msa0545340 | 0.819309 | 1.242978e-52 | -8.615850e-47 |
| Msa0054530 | Msa0545340 | 0.808034 | 3.775281e-50 | -8.615850e-47 |
| Msa0061340 | Msa0545340 | 0.817891 | 2.606463e-52 | -8.615850e-47 |
| Msa0081090 | Msa0545340 | 0.808781 | 2.616137e-50 | -8.615850e-47 |
| Msa0081520 | Msa0545340 | 0.834213 | 3.413653e-56 | -8.615850e-47 |
| Msa0089980 | Msa0545340 | 0.802923 | 4.456066e-49 | -8.615850e-47 |
| Msa0090010 | Msa0545340 | 0.800120 | 1.672992e-48 | -8.615850e-47 |
| Msa0092790 | Msa0545340 | 0.805259 | 1.455259e-49 | -8.615850e-47 |
| Msa0094130 | Msa0545340 | 0.803695 | 3.083683e-49 | -8.615850e-47 |
| Msa0094850 | Msa0545340 | 0.834216 | 3.407889e-56 | -8.615850e-47 |
| Msa0124060 | Msa0545340 | 0.802648 | 5.078283e-49 | -8.615850e-47 |
| Msa0129940 | Msa0545340 | 0.808147 | 3.573385e-50 | -8.615850e-47 |
| Msa0131900 | Msa0545340 | 0.800946 | 1.135235e-48 | -8.615850e-47 |
| Msa0134610 | Msa0545340 | 0.803509 | 3.369286e-49 | -8.615850e-47 |
| Msa0136650 | Msa0545340 | 0.811487 | 6.830979e-51 | -8.615850e-47 |
| Msa0152400 | Msa0545340 | 0.838445 | 2.862960e-57 | -8.615850e-47 |
| Msa0168500 | Msa0545340 | 0.807204 | 5.666350e-50 | -8.615850e-47 |
| Msa0173890 | Msa0545340 | 0.826293 | 2.937397e-54 | -8.615850e-47 |
| Msa0197420 | Msa0545340 | 0.804684 | 1.919633e-49 | -8.615850e-47 |
| Msa0197930 | Msa0545340 | 0.809741 | 1.628908e-50 | -8.615850e-47 |
| Msa0206840 | Msa0545340 | 0.803328 | 3.674461e-49 | -8.615850e-47 |
| Msa0221000 | Msa0545340 | 0.813648 | 2.301863e-51 | -8.615850e-47 |
| Msa0223080 | Msa0545340 | 0.802619 | 5.147718e-49 | -8.615850e-47 |
| Msa0225460 | Msa0545340 | 0.807636 | 4.589178e-50 | -8.615850e-47 |
| Msa0225480 | Msa0545340 | 0.800452 | 1.431588e-48 | -8.615850e-47 |
| Msa0225680 | Msa0545340 | 0.809950 | 1.468644e-50 | -8.615850e-47 |
| Msa0225750 | Msa0545340 | 0.807404 | 5.139418e-50 | -8.615850e-47 |
| Msa0225860 | Msa0545340 | 0.806008 | 1.013302e-49 | -8.615850e-47 |
| Msa0378720 | Msa0545340 | 0.826081 | 3.298669e-54 | -8.615850e-47 |
| Msa0380620 | Msa0545340 | 0.809198 | 2.130216e-50 | -8.615850e-47 |
| Msa0403850 | Msa0545340 | 0.801536 | 8.596652e-49 | -8.615850e-47 |
| Msa0403910 | Msa0545340 | 0.802521 | 5.394380e-49 | -8.615850e-47 |
| Msa0410500 | Msa0545340 | 0.809438 | 1.892193e-50 | -8.615850e-47 |
| Msa0422850 | Msa0545340 | 0.804467 | 2.130466e-49 | -8.615850e-47 |
| Msa0422930 | Msa0545340 | 0.808819 | 2.567921e-50 | -8.615850e-47 |
| Msa0428920 | Msa0545340 | 0.806313 | 8.739417e-50 | -8.615850e-47 |
| Msa0430260 | Msa0545340 | 0.817755 | 2.797426e-52 | -8.615850e-47 |
| Msa0447370 | Msa0545340 | 0.815940 | 7.145766e-52 | -8.615850e-47 |
| Msa0467430 | Msa0545340 | 0.811876 | 5.623005e-51 | -8.615850e-47 |
| Msa0474730 | Msa0545340 | 0.814966 | 1.176844e-51 | -8.615850e-47 |
| Msa0475790 | Msa0545340 | 0.802613 | 5.162202e-49 | -8.615850e-47 |
| Msa0479170 | Msa0545340 | 0.808884 | 2.486417e-50 | -8.615850e-47 |
| Msa0479200 | Msa0545340 | 0.816185 | 6.299737e-52 | -8.615850e-47 |
| Msa0239190 | Msa0545340 | 0.811684 | 6.191290e-51 | -8.615850e-47 |
| Msa0239570 | Msa0545340 | 0.824993 | 5.971191e-54 | -8.615850e-47 |
| Msa0244640 | Msa0545340 | 0.810281 | 1.246286e-50 | -8.615850e-47 |
| Msa0255090 | Msa0545340 | 0.808402 | 3.151749e-50 | -8.615850e-47 |
| Msa0259380 | Msa0545340 | 0.801607 | 8.313654e-49 | -8.615850e-47 |
| Msa0265850 | Msa0545340 | 0.837852 | 4.070980e-57 | -8.615850e-47 |
| Msa0267110 | Msa0545340 | 0.821080 | 4.883148e-53 | -8.615850e-47 |
| Msa0287740 | Msa0545340 | 0.801982 | 6.963031e-49 | -8.615850e-47 |
| Msa0298500 | Msa0545340 | 0.801180 | 1.016694e-48 | -8.615850e-47 |
| Msa0300270 | Msa0545340 | 0.829366 | 5.358489e-55 | -8.615850e-47 |
| Msa0300320 | Msa0545340 | 0.822800 | 1.951475e-53 | -8.615850e-47 |
| Msa0302160 | Msa0545340 | 0.802629 | 5.123142e-49 | -8.615850e-47 |
| Msa0317280 | Msa0545340 | 0.806281 | 8.876369e-50 | -8.615850e-47 |
| Msa0318700 | Msa0545340 | 0.805109 | 1.564760e-49 | -8.615850e-47 |
| Msa0337700 | Msa0545340 | 0.829530 | 4.888746e-55 | -8.615850e-47 |
| Msa0339490 | Msa0545340 | 0.805926 | 1.054388e-49 | -8.615850e-47 |
| Msa0363400 | Msa0545340 | 0.804411 | 2.188552e-49 | -8.615850e-47 |
| Msa0500380 | Msa0545340 | 0.802817 | 4.686030e-49 | -8.615850e-47 |
| Msa0513160 | Msa0545340 | 0.832578 | 8.728107e-56 | -8.615850e-47 |
| Msa0516170 | Msa0545340 | 0.802435 | 5.617247e-49 | -8.615850e-47 |
| Msa0527550 | Msa0545340 | 0.802221 | 6.217884e-49 | -8.615850e-47 |
| Msa0527860 | Msa0545340 | 0.831058 | 2.070164e-55 | -8.615850e-47 |
| Msa0535040 | Msa0545340 | 0.805433 | 1.337911e-49 | -8.615850e-47 |
| Msa0545340 | Msa0546500 | 0.802920 | 4.461016e-49 | -8.615850e-47 |
| Msa0545340 | Msa0580370 | 0.838715 | 2.439197e-57 | -8.615850e-47 |
| Msa0545340 | Msa0582450 | 0.825169 | 5.426695e-54 | -8.615850e-47 |
| Msa0545340 | Msa0586190 | 0.825098 | 5.639912e-54 | -8.615850e-47 |
| Msa0545340 | Msa0597790 | 0.831002 | 2.136018e-55 | -8.615850e-47 |
| Msa0545340 | Msa0600930 | 0.872460 | 3.127717e-67 | -8.615850e-47 |
| Msa0545340 | Msa0614000 | 0.814770 | 1.300946e-51 | -8.615850e-47 |
| Msa0545340 | Msa0620230 | 0.814620 | 1.404145e-51 | -8.615850e-47 |
| Msa0545340 | Msa0625630 | 0.831339 | 1.765686e-55 | -8.615850e-47 |
| Msa0545340 | Msa0626450 | 0.842961 | 1.878221e-58 | -8.615850e-47 |
| Msa0545340 | Msa0626490 | 0.839843 | 1.242910e-57 | -8.615850e-47 |
| Msa0545340 | Msa0637560 | 0.819871 | 9.247781e-53 | -8.615850e-47 |
| Msa0545340 | Msa0637580 | 0.817665 | 2.931758e-52 | -8.615850e-47 |
| Msa0545340 | Msa0638480 | 0.827194 | 1.789660e-54 | -8.615850e-47 |
| Msa0545340 | Msa0641390 | 0.870491 | 1.402336e-66 | -8.615850e-47 |
| Msa0545340 | Msa0643300 | 0.829674 | 4.510322e-55 | -8.615850e-47 |
| Msa0545340 | Msa0663300 | 0.828791 | 7.387280e-55 | -8.615850e-47 |
| Msa0545340 | Msa0664060 | 0.826308 | 2.913236e-54 | -8.615850e-47 |
| Msa0545340 | Msa0664600 | 0.842709 | 2.190587e-58 | -8.615850e-47 |
| Msa0545340 | Msa0677410 | 0.813709 | 2.230736e-51 | -8.615850e-47 |
| Msa0545340 | Msa0679870 | 0.894179 | 3.144016e-75 | -8.615850e-47 |
| Msa0545340 | Msa0683570 | 0.817353 | 3.445779e-52 | -8.615850e-47 |
| Msa0545340 | Msa0729100 | 0.827169 | 1.814777e-54 | -8.615850e-47 |
| Msa0545340 | Msa0766580 | 0.803996 | 2.670184e-49 | -8.615850e-47 |
| Msa0545340 | Msa0783210 | 0.802256 | 6.114423e-49 | -8.615850e-47 |
| Msa0545340 | Msa0795870 | 0.843852 | 1.085985e-58 | -8.615850e-47 |
| Msa0545340 | Msa0807280 | 0.813963 | 1.961151e-51 | -8.615850e-47 |
| Msa0545340 | Msa0807820 | 0.818907 | 1.534319e-52 | -8.615850e-47 |
| Msa0545340 | Msa0833650 | 0.842251 | 2.899153e-58 | -8.615850e-47 |
| Msa0545340 | Msa0835960 | 0.810951 | 8.930180e-51 | -8.615850e-47 |
| Msa0545340 | Msa0842680 | 0.800469 | 1.420290e-48 | -8.615850e-47 |
| Msa0545340 | Msa0861510 | 0.838104 | 3.505601e-57 | -8.615850e-47 |
| Msa0545340 | Msa0861530 | 0.809524 | 1.813813e-50 | -8.615850e-47 |
| Msa0545340 | Msa0861600 | 0.843690 | 1.199966e-58 | -8.615850e-47 |
| Msa0545340 | Msa0866290 | 0.825841 | 3.761884e-54 | -8.615850e-47 |
| Msa0545340 | Msa0880450 | 0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa0545340 | Msa0896540 | 0.838835 | 2.270500e-57 | -8.615850e-47 |
| Msa0545340 | Msa0930780 | 0.807688 | 4.473358e-50 | -8.615850e-47 |
| Msa0545340 | Msa0961690 | 0.805451 | 1.326597e-49 | -8.615850e-47 |
| Msa0545340 | Msa0967870 | 0.804782 | 1.830911e-49 | -8.615850e-47 |
| Msa0545340 | Msa1005870 | 0.810649 | 1.037662e-50 | -8.615850e-47 |
| Msa0545340 | Msa1045140 | 0.823392 | 1.419802e-53 | -8.615850e-47 |
| Msa0545340 | Msa1050910 | 0.810726 | 9.985672e-51 | -8.615850e-47 |
| Msa0545340 | Msa1092010 | 0.815647 | 8.306916e-52 | -8.615850e-47 |
| Msa0545340 | Msa1112380 | 0.808342 | 3.246226e-50 | -8.615850e-47 |
| Msa0545340 | Msa1113340 | 0.817094 | 3.940241e-52 | -8.615850e-47 |
| Msa0545340 | Msa1125940 | 0.800439 | 1.440496e-48 | -8.615850e-47 |
| Msa0545340 | Msa1132840 | 0.842368 | 2.698095e-58 | -8.615850e-47 |
| Msa0545340 | Msa1157870 | 0.838985 | 2.077316e-57 | -8.615850e-47 |
| Msa0545340 | Msa1174530 | 0.804530 | 2.067016e-49 | -8.615850e-47 |
| Msa0545340 | Msa1192090 | 0.805663 | 1.197343e-49 | -8.615850e-47 |
| Msa0545340 | Msa1199570 | 0.809978 | 1.448157e-50 | -8.615850e-47 |
| Msa0545340 | Msa1208160 | 0.800078 | 1.705689e-48 | -8.615850e-47 |
| Msa0545340 | Msa1208430 | 0.815671 | 8.205273e-52 | -8.615850e-47 |
| Msa0545340 | Msa1228200 | 0.812562 | 3.982057e-51 | -8.615850e-47 |
| Msa0545340 | Msa1232710 | 0.809646 | 1.706873e-50 | -8.615850e-47 |
| Msa0545340 | Msa1267770 | 0.825308 | 5.031792e-54 | -8.615850e-47 |
| Msa0545340 | Msa1269480 | 0.800458 | 1.427786e-48 | -8.615850e-47 |
| Msa0545340 | Msa1276660 | 0.846720 | 1.818871e-59 | -8.615850e-47 |
| Msa0545340 | Msa1298370 | 0.805707 | 1.172090e-49 | -8.615850e-47 |
| Msa0545340 | Msa1313300 | 0.809013 | 2.333604e-50 | -8.615850e-47 |
| Msa0545340 | Msa1320670 | 0.803836 | 2.882186e-49 | -8.615850e-47 |
| Msa0545340 | Msa1328710 | 0.811248 | 7.699000e-51 | -8.615850e-47 |
| Msa0545340 | Msa1356830 | 0.831702 | 1.437042e-55 | -8.615850e-47 |
| Msa0545340 | Msa1369150 | 0.845721 | 3.402572e-59 | -8.615850e-47 |
| Msa0545340 | Msa1372230 | 0.803376 | 3.591005e-49 | -8.615850e-47 |
| Msa0545340 | Msa1373100 | 0.820919 | 5.316572e-53 | -8.615850e-47 |
| Msa0545340 | Msa1374040 | 0.803992 | 2.675018e-49 | -8.615850e-47 |
| Msa0545340 | Msa1398340 | 0.800752 | 1.243648e-48 | -8.615850e-47 |
| Msa0545340 | Msa1402400 | 0.804777 | 1.835799e-49 | -8.615850e-47 |
| Msa0545340 | Msa1422420 | 0.800193 | 1.616250e-48 | -8.615850e-47 |
| Msa0545340 | Msa1422950 | 0.820392 | 7.026438e-53 | -8.615850e-47 |
| Msa0545340 | Msa1430240 | 0.804282 | 2.328256e-49 | -8.615850e-47 |
| Msa0545340 | Msa1437940 | 0.819563 | 1.087501e-52 | -8.615850e-47 |
| Msa0545340 | Msa1439610 | 0.809210 | 2.118066e-50 | -8.615850e-47 |
| Msa0545340 | Msa1440960 | 0.831200 | 1.910398e-55 | -8.615850e-47 |
| Msa0545340 | Msa1445190 | 0.831210 | 1.898980e-55 | -8.615850e-47 |
| Msa0545340 | Msa1446820 | 0.804524 | 2.073276e-49 | -8.615850e-47 |
| Msa0545340 | Msa1454140 | 0.807352 | 5.272259e-50 | -8.615850e-47 |
| Msa0545340 | Msa1459380 | 0.816857 | 4.453854e-52 | -8.615850e-47 |
| Msa0545340 | Msa1465440 | 0.824495 | 7.826635e-54 | -8.615850e-47 |
| Msa0545340 | Msa1466920 | 0.819378 | 1.198738e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545340 | MtrunA17_Chr4g0026051 | 95.469 | 640 | 28 | 1 | 1 | 640 | 1 | 639 | 0.0 | 1199 |
| Msa0545340 | MtrunA17_Chr2g0321731 | 51.274 | 667 | 260 | 21 | 1 | 628 | 1 | 641 | 2.75e-174 | 510 |
| Msa0545340 | MtrunA17_Chr7g0266861 | 42.804 | 542 | 261 | 16 | 19 | 524 | 4 | 532 | 8.64e-108 | 340 |
| Msa0545340 | MtrunA17_Chr5g0397031 | 30.617 | 405 | 256 | 8 | 45 | 436 | 20 | 412 | 2.38e-42 | 162 |
| Msa0545340 | MtrunA17_Chr3g0098801 | 37.788 | 217 | 130 | 3 | 219 | 435 | 200 | 411 | 1.20e-33 | 137 |
| Msa0545340 | MtrunA17_Chr5g0444041 | 39.048 | 210 | 120 | 2 | 228 | 437 | 201 | 402 | 2.96e-29 | 123 |
| Msa0545340 | MtrunA17_Chr8g0347871 | 26.118 | 425 | 252 | 12 | 42 | 449 | 18 | 397 | 3.87e-28 | 119 |
| Msa0545340 | MtrunA17_Chr2g0288331 | 34.375 | 192 | 118 | 1 | 256 | 439 | 166 | 357 | 4.45e-22 | 100 |
| Msa0545340 | MtrunA17_Chr7g0275251 | 31.140 | 228 | 134 | 6 | 222 | 436 | 134 | 351 | 3.40e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545340 | AT3G11590.1 | 42.500 | 520 | 265 | 10 | 22 | 514 | 15 | 527 | 5.16e-102 | 323 |
| Msa0545340 | AT3G11590.2 | 45.029 | 342 | 177 | 5 | 180 | 514 | 28 | 365 | 1.75e-71 | 238 |
| Msa0545340 | AT5G22310.1 | 37.000 | 500 | 215 | 17 | 23 | 512 | 9 | 418 | 6.11e-58 | 203 |
| Msa0545340 | AT1G50660.1 | 37.615 | 218 | 134 | 1 | 220 | 437 | 213 | 428 | 1.11e-38 | 152 |
| Msa0545340 | AT3G20350.1 | 34.862 | 218 | 140 | 1 | 220 | 437 | 190 | 405 | 9.58e-32 | 131 |
| Msa0545340 | AT5G41620.1 | 28.791 | 455 | 266 | 15 | 96 | 511 | 44 | 479 | 3.36e-24 | 107 |
| Msa0545340 | AT5G41620.4 | 29.967 | 307 | 192 | 7 | 214 | 511 | 70 | 362 | 3.89e-22 | 100 |
| Msa0545340 | AT5G41620.3 | 29.967 | 307 | 192 | 7 | 214 | 511 | 70 | 362 | 3.89e-22 | 100 |
| Msa0545340 | AT5G41620.2 | 30.195 | 308 | 190 | 7 | 214 | 511 | 28 | 320 | 6.16e-22 | 99.8 |
| Msa0545340 | AT1G64180.1 | 27.907 | 387 | 227 | 14 | 97 | 460 | 61 | 418 | 4.72e-18 | 88.6 |
| Msa0545340 | AT2G46250.1 | 27.513 | 378 | 214 | 13 | 42 | 415 | 13 | 334 | 9.74e-16 | 80.9 |
| Msa0545340 | AT2G46250.2 | 30.583 | 206 | 121 | 5 | 211 | 415 | 59 | 243 | 5.91e-12 | 68.2 |
Find 141 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCTAAGACCTTCTTTA+AGG | 0.119885 | 4_1:+35413262 | None:intergenic |
| CAGATTCAAGAGAGCTATTT+TGG | 0.143793 | 4_1:-35413172 | Msa0545340:CDS |
| GTCCTTCAAACTCTGCATTT+TGG | 0.173945 | 4_1:+35410879 | None:intergenic |
| TAGAAATTTACCTCTGAAAT+TGG | 0.178059 | 4_1:+35412814 | None:intergenic |
| TTTGAAGGAGTAAAGAAATT+TGG | 0.181272 | 4_1:+35413537 | None:intergenic |
| GAAAGACAACATTTACAATT+TGG | 0.201643 | 4_1:+35410301 | None:intergenic |
| CATTTAAACTGTCACTGATA+TGG | 0.206634 | 4_1:+35412624 | None:intergenic |
| AGAACTAGAGATGAAGAAAA+TGG | 0.210580 | 4_1:-35410971 | Msa0545340:CDS |
| ATCCTCATCTTCATCTTCTT+TGG | 0.213160 | 4_1:-35413205 | Msa0545340:CDS |
| ATCTTGACCTTCTTGAATAT+TGG | 0.229109 | 4_1:+35410625 | None:intergenic |
| ATCCTTCTCTTTATCTTTGC+AGG | 0.236337 | 4_1:+35413032 | None:intergenic |
| TACTACCTCTTCACCTTCTA+TGG | 0.269218 | 4_1:-35413100 | Msa0545340:CDS |
| TACTACCTAAAGCAAATTAT+AGG | 0.300225 | 4_1:-35410106 | Msa0545340:three_prime_UTR |
| CAAATCCCTCTTCTTGAAAC+TGG | 0.309352 | 4_1:+35410652 | None:intergenic |
| TTAAGATTTACATGAAGATT+TGG | 0.314987 | 4_1:+35413356 | None:intergenic |
| CCATATACTCAATGTCGTTC+TGG | 0.316655 | 4_1:+35411455 | None:intergenic |
| ACAGCATGAAACATTATTAT+AGG | 0.317537 | 4_1:-35410024 | Msa0545340:three_prime_UTR |
| CCAGAACGACATTGAGTATA+TGG | 0.324326 | 4_1:-35411455 | Msa0545340:CDS |
| CAGTTTCAAGAAGAGGGATT+TGG | 0.331048 | 4_1:-35410651 | Msa0545340:CDS |
| AAGTCCTTCTTGACCCTTGA+AGG | 0.334027 | 4_1:+35412952 | None:intergenic |
| GAGTCCCTATAATTTGCTTT+AGG | 0.340804 | 4_1:+35410101 | None:intergenic |
| GTTATTCATGTTCAATTCAA+TGG | 0.348123 | 4_1:+35410820 | None:intergenic |
| ATGAACTAGCTAGAGGTATT+GGG | 0.350017 | 4_1:-35411195 | Msa0545340:CDS |
| CTCTCGGAAGTGAGCTTGAT+CGG | 0.359285 | 4_1:-35411528 | Msa0545340:CDS |
| GAACTAGAGATGAAGAAAAT+GGG | 0.372973 | 4_1:-35410970 | Msa0545340:CDS |
| TAGCCTCTGAAAGCTTCATT+TGG | 0.383384 | 4_1:+35411059 | None:intergenic |
| GATGAACTAGCTAGAGGTAT+TGG | 0.384127 | 4_1:-35411196 | Msa0545340:CDS |
| TTATCTCATCCACTTCGTTC+TGG | 0.386985 | 4_1:-35412656 | Msa0545340:CDS |
| ACTACCTAAAGCAAATTATA+GGG | 0.387161 | 4_1:-35410105 | Msa0545340:three_prime_UTR |
| TCATGTTCAATTCAATGGAT+TGG | 0.393833 | 4_1:+35410825 | None:intergenic |
| TCAATTATATTTGAGATGTA+TGG | 0.395578 | 4_1:-35410080 | Msa0545340:three_prime_UTR |
| AAATTCTCTTCTTGTCTTTG+AGG | 0.399203 | 4_1:-35410444 | Msa0545340:CDS |
| GCTGGTGGAGGAAATGAAAA+AGG | 0.402845 | 4_1:-35411161 | Msa0545340:CDS |
| AATTCTCTTCTTGTCTTTGA+GGG | 0.407799 | 4_1:-35410443 | Msa0545340:CDS |
| ATATGTTCAAAACTTATCAT+TGG | 0.410461 | 4_1:-35410269 | Msa0545340:three_prime_UTR |
| ATTTAAACTGTCACTGATAT+GGG | 0.411688 | 4_1:+35412625 | None:intergenic |
| CTAGTCTTCCACAGTGGAAC+TGG | 0.417773 | 4_1:+35413123 | None:intergenic |
| GACATCGAAGAAGATTCTTA+AGG | 0.419711 | 4_1:-35411608 | Msa0545340:CDS |
| AAAACTTGCTGCTTCTTTGT+GGG | 0.423406 | 4_1:-35412992 | Msa0545340:CDS |
| CTTGTATAAGTTTGTCAAGT+AGG | 0.423672 | 4_1:+35411497 | None:intergenic |
| CTTCATGTAAATCTTAAACT+TGG | 0.426325 | 4_1:-35413350 | Msa0545340:five_prime_UTR |
| GAAAACTTGCTGCTTCTTTG+TGG | 0.429207 | 4_1:-35412993 | Msa0545340:CDS |
| TTTGAATAGTTGTATAGAGT+TGG | 0.429933 | 4_1:+35409995 | None:intergenic |
| GAGAAATTCAATTGAACTAT+CGG | 0.431627 | 4_1:+35410592 | None:intergenic |
| ATCTTATGAGAGAATTCAAT+GGG | 0.436305 | 4_1:-35410702 | Msa0545340:CDS |
| GCTAAGAGCTTGTCAAGATC+AGG | 0.436981 | 4_1:-35412874 | Msa0545340:CDS |
| AGAAAATGGGGATGCTTCTC+CGG | 0.438097 | 4_1:-35410957 | Msa0545340:CDS |
| TAAGAAGATTGCCCTAGAAA+TGG | 0.445287 | 4_1:-35411302 | Msa0545340:CDS |
| TTACAGTGGAGAAGAAGTTA+AGG | 0.447721 | 4_1:-35411345 | Msa0545340:CDS |
| GGTTACAGAAGAACAGTGTC+AGG | 0.450224 | 4_1:-35412680 | Msa0545340:CDS |
| TCTCGGAAGTGAGCTTGATC+GGG | 0.453424 | 4_1:-35411527 | Msa0545340:CDS |
| AGATTTCACACAACAAAATC+AGG | 0.460418 | 4_1:-35413242 | Msa0545340:CDS |
| AGTGAGCTTGATCGGGTTTG+CGG | 0.462949 | 4_1:-35411520 | Msa0545340:CDS |
| TTCCAAAATGCAGAGTTTGA+AGG | 0.463631 | 4_1:-35410881 | Msa0545340:CDS |
| TCAATGATTTGCATCCTTCA+AGG | 0.464131 | 4_1:-35412966 | Msa0545340:CDS |
| AGGACGGAACTCCAAGCAAT+AGG | 0.467947 | 4_1:-35410544 | Msa0545340:CDS |
| TTTGAAATGCAGAAGAATAG+TGG | 0.468349 | 4_1:-35411685 | Msa0545340:intron |
| AACATGAATAACGGCAATAG+AGG | 0.473854 | 4_1:-35410809 | Msa0545340:CDS |
| AGAGGCTAAGTATCAATTTG+AGG | 0.476141 | 4_1:-35411044 | Msa0545340:CDS |
| TCTGAAATTGGACTGTTACA+TGG | 0.482465 | 4_1:+35412826 | None:intergenic |
| AGAAATTCAATTGAACTATC+GGG | 0.482943 | 4_1:+35410593 | None:intergenic |
| GAAATTCCAGTTTCAAGAAG+AGG | 0.486758 | 4_1:-35410658 | Msa0545340:CDS |
| CTTGAAATAGACCTATTGCT+TGG | 0.494567 | 4_1:+35410533 | None:intergenic |
| TTGATTATGCAGAGAATGAA+AGG | 0.495962 | 4_1:-35412716 | Msa0545340:intron |
| TTGAATTTCTCTCTCGAGCT+CGG | 0.496584 | 4_1:-35410580 | Msa0545340:CDS |
| TACTTCTAGCTTCCTTCAGA+TGG | 0.502252 | 4_1:+35411638 | None:intergenic |
| AAATTCCAGTTTCAAGAAGA+GGG | 0.503620 | 4_1:-35410657 | Msa0545340:CDS |
| TGAAGATTTGGACATGTGAT+AGG | 0.504000 | 4_1:+35413368 | None:intergenic |
| ATGAAAGGATTTGAAAGTGA+TGG | 0.504945 | 4_1:-35412701 | Msa0545340:CDS |
| TCCTTCTCTTTATCTTTGCA+GGG | 0.505637 | 4_1:+35413033 | None:intergenic |
| ATGTTGATGAAAATTGTTTG+TGG | 0.506418 | 4_1:+35413315 | None:intergenic |
| AGTAAGAGAAATCTTGTGAA+GGG | 0.508236 | 4_1:+35413667 | None:intergenic |
| GAACAAGTTGTTTGATCCAC+CGG | 0.511125 | 4_1:-35410189 | Msa0545340:three_prime_UTR |
| GTGAAGGGGAAGAGAGTAAA+CGG | 0.516975 | 4_1:+35413682 | None:intergenic |
| AAGTATGTGAAGAGCTTGAA+AGG | 0.517210 | 4_1:-35411255 | Msa0545340:CDS |
| TTGGATACCAATATTCAAGA+AGG | 0.521415 | 4_1:-35410632 | Msa0545340:CDS |
| GCATCCTTCAAGGGTCAAGA+AGG | 0.522100 | 4_1:-35412956 | Msa0545340:CDS |
| AATCTTATGAGAGAATTCAA+TGG | 0.524217 | 4_1:-35410703 | Msa0545340:CDS |
| CAATGATTTGCATCCTTCAA+GGG | 0.529504 | 4_1:-35412965 | Msa0545340:CDS |
| AGTATGTGAAGAGCTTGAAA+GGG | 0.530337 | 4_1:-35411254 | Msa0545340:CDS |
| ATGGCCCTCACCTTGGCTCT+CGG | 0.531209 | 4_1:-35411544 | Msa0545340:CDS |
| ATTGAATTGAACATGAATAA+CGG | 0.536556 | 4_1:-35410818 | Msa0545340:CDS |
| ATCGACAATGGCCCTCACCT+TGG | 0.536907 | 4_1:-35411551 | Msa0545340:CDS |
| ATGGAGTTATCCAAGCGAAA+AGG | 0.537795 | 4_1:-35410780 | Msa0545340:CDS |
| ACAAACAATAACCTTAAAGA+AGG | 0.541262 | 4_1:-35413273 | Msa0545340:CDS |
| TCAACTGACAAAGAAAGTAC+AGG | 0.541285 | 4_1:-35410731 | Msa0545340:CDS |
| GTGTGTTATATGATGTTTGA+AGG | 0.541801 | 4_1:+35413522 | None:intergenic |
| TGGGGAAGACAGAGCGCTGG+TGG | 0.546628 | 4_1:-35411176 | Msa0545340:CDS |
| TCATTTGTTCACATGTGTAG+TGG | 0.547076 | 4_1:+35410147 | None:intergenic |
| AATAGTGGCAAATGCGCGGT+TGG | 0.558575 | 4_1:-35411670 | Msa0545340:CDS |
| CACTTCCGAGAGCCAAGGTG+AGG | 0.561898 | 4_1:+35411539 | None:intergenic |
| AATGAGAAAGTCTTGTGAGA+GGG | 0.562237 | 4_1:+35413604 | None:intergenic |
| GGTTAAAGTTCGTGAAGAAG+TGG | 0.574473 | 4_1:-35411134 | Msa0545340:CDS |
| GGAAGACAGAGCGCTGGTGG+AGG | 0.574780 | 4_1:-35411173 | Msa0545340:CDS |
| TGTCAAGATCAGGTTTGTTG+AGG | 0.577058 | 4_1:-35412864 | Msa0545340:CDS |
| CCACAGTGGAACTGGTGTGG+TGG | 0.578057 | 4_1:+35413131 | None:intergenic |
| GATGCATATGAAAGAAAAGT+GGG | 0.578265 | 4_1:+35413450 | None:intergenic |
| AGCCAAAGAAGATGAAGATG+AGG | 0.578669 | 4_1:+35413203 | None:intergenic |
| TATCAGTGACAGTTTAAATG+AGG | 0.579551 | 4_1:-35412621 | Msa0545340:intron |
| GTTCTCCATAGAAGGTGAAG+AGG | 0.580106 | 4_1:+35413095 | None:intergenic |
| TGAACTAGCTAGAGGTATTG+GGG | 0.580383 | 4_1:-35411194 | Msa0545340:CDS |
| AACTAGAGATGAAGAAAATG+GGG | 0.583537 | 4_1:-35410969 | Msa0545340:CDS |
| GTAAGAGAAATCTTGTGAAG+GGG | 0.584453 | 4_1:+35413668 | None:intergenic |
| AGATGCATATGAAAGAAAAG+TGG | 0.586741 | 4_1:+35413449 | None:intergenic |
| TGTGTAGTGTTCTCCATAGA+AGG | 0.588791 | 4_1:+35413087 | None:intergenic |
| TCATCCACTTCGTTCTGGTG+TGG | 0.594511 | 4_1:-35412651 | Msa0545340:CDS |
| AAGTAAGAGAAATCTTGTGA+AGG | 0.595947 | 4_1:+35413666 | None:intergenic |
| GAATGAGAAAGTCTTGTGAG+AGG | 0.597520 | 4_1:+35413603 | None:intergenic |
| GTTTGTTTGATTATGACAAG+AGG | 0.599018 | 4_1:+35413290 | None:intergenic |
| CAACTGACAAAGAAAGTACA+GGG | 0.604741 | 4_1:-35410730 | Msa0545340:CDS |
| AGGACATAATGACTCGGATG+AGG | 0.605873 | 4_1:-35410861 | Msa0545340:CDS |
| TGGAGTGAAGAGCCATCTGA+AGG | 0.607672 | 4_1:-35411650 | Msa0545340:CDS |
| ACTTCCGAGAGCCAAGGTGA+GGG | 0.608096 | 4_1:+35411540 | None:intergenic |
| AGTTAAGGAAACAAACTGAA+AGG | 0.615070 | 4_1:-35411330 | Msa0545340:CDS |
| CTTCCACAGTGGAACTGGTG+TGG | 0.616603 | 4_1:+35413128 | None:intergenic |
| ACGGCAATAGAGGATCAGAA+TGG | 0.622780 | 4_1:-35410799 | Msa0545340:CDS |
| AAGCTCACTTCCGAGAGCCA+AGG | 0.624529 | 4_1:+35411534 | None:intergenic |
| AACAAATGAAATAAGAACAA+AGG | 0.626591 | 4_1:-35410133 | Msa0545340:three_prime_UTR |
| TGAGCAAATGAGAAGCTGCA+AGG | 0.629237 | 4_1:-35412923 | Msa0545340:CDS |
| TATTGGGGAAGACAGAGCGC+TGG | 0.631890 | 4_1:-35411179 | Msa0545340:CDS |
| AGTCCAAATGAAGCTTTCAG+AGG | 0.636988 | 4_1:-35411062 | Msa0545340:CDS |
| ACCCTGCAAAGATAAAGAGA+AGG | 0.640516 | 4_1:-35413034 | Msa0545340:CDS |
| ATGTAACAGTCCAATTTCAG+AGG | 0.641887 | 4_1:-35412824 | Msa0545340:intron |
| CTGTTACATGGATCTGACAT+AGG | 0.644602 | 4_1:+35412838 | None:intergenic |
| AGAGAAGCAATCATCGACAA+TGG | 0.653351 | 4_1:-35411563 | Msa0545340:CDS |
| CGGATACAAGACGATGAGGA+CGG | 0.655237 | 4_1:-35410560 | Msa0545340:CDS |
| CTTTCACTAGTACACTGCAA+AGG | 0.656661 | 4_1:+35410476 | None:intergenic |
| GCGTCCACACCAGAACGAAG+TGG | 0.663463 | 4_1:+35412647 | None:intergenic |
| AGTTATCCAAGCGAAAAGGA+TGG | 0.665163 | 4_1:-35410776 | Msa0545340:CDS |
| ATTTGTGATGAACTAGCTAG+AGG | 0.666500 | 4_1:-35411202 | Msa0545340:CDS |
| GAAGAATAGTGGCAAATGCG+CGG | 0.672467 | 4_1:-35411674 | Msa0545340:CDS |
| TGTAGCTGAAGAGCTTACAG+TGG | 0.676427 | 4_1:-35411359 | Msa0545340:CDS |
| AGCTCGGATACAAGACGATG+AGG | 0.678318 | 4_1:-35410564 | Msa0545340:CDS |
| TTACATGGATCTGACATAGG+TGG | 0.679281 | 4_1:+35412841 | None:intergenic |
| GTTTGAAGGACATAATGACT+CGG | 0.680846 | 4_1:-35410867 | Msa0545340:CDS |
| AATTTGAAGCAAGAAGCTGA+AGG | 0.689873 | 4_1:-35410416 | Msa0545340:CDS |
| GTTACAGAAGAACAGTGTCA+GGG | 0.691405 | 4_1:-35412679 | Msa0545340:CDS |
| CCACCACACCAGTTCCACTG+TGG | 0.727949 | 4_1:-35413131 | Msa0545340:CDS |
| CTGACAAAGAAAGTACAGGG+AGG | 0.786919 | 4_1:-35410727 | Msa0545340:CDS |
| TCTTATGAGAGAATTCAATG+GGG | 0.795055 | 4_1:-35410701 | Msa0545340:CDS |
| GTAGTACTAGTCTTCCACAG+TGG | 0.798955 | 4_1:+35413117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAGAAAATAAAAAT+TGG | - | chr4_1:35411486-35411505 | Msa0545340:CDS | 10.0% |
| !!! | TAATTTTATTGTAAGAAAAT+AGG | + | chr4_1:35411677-35411696 | None:intergenic | 10.0% |
| !!! | TAATTTAAAATTACATGTTT+TGG | - | chr4_1:35411925-35411944 | Msa0545340:intron | 10.0% |
| !! | GGAACAAAAATAAAAATAAT+AGG | + | chr4_1:35413349-35413368 | None:intergenic | 15.0% |
| !!! | AAAGAAAAAGTGAGAAATTT+TGG | + | chr4_1:35410044-35410063 | None:intergenic | 20.0% |
| !! | TTAAGATTTACATGAAGATT+TGG | + | chr4_1:35410315-35410334 | None:intergenic | 20.0% |
| !!! | TTCATATGTATTGTGTTATT+TGG | - | chr4_1:35410895-35410914 | Msa0545340:CDS | 20.0% |
| !! | ACATATCTAAATTAGAAATG+TGG | - | chr4_1:35411262-35411281 | Msa0545340:CDS | 20.0% |
| !!! | TTGATGATTATGAAAATGAT+GGG | + | chr4_1:35411512-35411531 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTGTCAAAATTT+GGG | - | chr4_1:35411546-35411565 | Msa0545340:CDS | 20.0% |
| !!! | TTTTTTTGTGTCAAAATTTG+GGG | - | chr4_1:35411547-35411566 | Msa0545340:CDS | 20.0% |
| !!! | TTAATTTGTAGTAGTTGAAA+AGG | - | chr4_1:35411573-35411592 | Msa0545340:CDS | 20.0% |
| !! | TCTCTCAAATAAATATCTAA+CGG | + | chr4_1:35411653-35411672 | None:intergenic | 20.0% |
| !!! | TTAATTTTTAGTAGCTTTTC+AGG | - | chr4_1:35411694-35411713 | Msa0545340:intron | 20.0% |
| !!! | TTTAAAATTACATGTTTTGG+TGG | - | chr4_1:35411928-35411947 | Msa0545340:intron | 20.0% |
| !! | ATTGAATTGAACATGAATAA+CGG | - | chr4_1:35412850-35412869 | Msa0545340:CDS | 20.0% |
| !! | ATATGTTCAAAACTTATCAT+TGG | - | chr4_1:35413399-35413418 | Msa0545340:five_prime_UTR | 20.0% |
| !! | AACAAATGAAATAAGAACAA+AGG | - | chr4_1:35413535-35413554 | Msa0545340:five_prime_UTR | 20.0% |
| !!! | TCAATTATATTTGAGATGTA+TGG | - | chr4_1:35413588-35413607 | Msa0545340:five_prime_UTR | 20.0% |
| !!! | TTCCTTTTCTTTCCATTTTT+TGG | - | chr4_1:35410102-35410121 | Msa0545340:three_prime_UTR | 25.0% |
| ! | TTTGAAGGAGTAAAGAAATT+TGG | + | chr4_1:35410134-35410153 | None:intergenic | 25.0% |
| ! | CACAAAAAGTAAGTATATGA+TGG | - | chr4_1:35410265-35410284 | Msa0545340:three_prime_UTR | 25.0% |
| ! | CTTCATGTAAATCTTAAACT+TGG | - | chr4_1:35410318-35410337 | Msa0545340:three_prime_UTR | 25.0% |
| !! | ATGTTGATGAAAATTGTTTG+TGG | + | chr4_1:35410356-35410375 | None:intergenic | 25.0% |
| ! | ACAAACAATAACCTTAAAGA+AGG | - | chr4_1:35410395-35410414 | Msa0545340:CDS | 25.0% |
| !!! | TAGAAATTTACCTCTGAAAT+TGG | + | chr4_1:35410857-35410876 | None:intergenic | 25.0% |
| ! | ATTTAAACTGTCACTGATAT+GGG | + | chr4_1:35411046-35411065 | None:intergenic | 25.0% |
| !!! | GTTGATGATTATGAAAATGA+TGG | + | chr4_1:35411513-35411532 | None:intergenic | 25.0% |
| ! | CAAAAAAAGGTTGAATAACT+AGG | + | chr4_1:35411535-35411554 | None:intergenic | 25.0% |
| !!! | CCAAATTTTGACACAAAAAA+AGG | + | chr4_1:35411548-35411567 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTGTGTCAAAATT+TGG | - | chr4_1:35411545-35411564 | Msa0545340:CDS | 25.0% |
| !!! | TTTTTTGTGTCAAAATTTGG+GGG | - | chr4_1:35411548-35411567 | Msa0545340:CDS | 25.0% |
| ! | GTTATTCATGTTCAATTCAA+TGG | + | chr4_1:35412851-35412870 | None:intergenic | 25.0% |
| ! | AATCTTATGAGAGAATTCAA+TGG | - | chr4_1:35412965-35412984 | Msa0545340:CDS | 25.0% |
| ! | ATCTTATGAGAGAATTCAAT+GGG | - | chr4_1:35412966-35412985 | Msa0545340:CDS | 25.0% |
| ! | AGAAATTCAATTGAACTATC+GGG | + | chr4_1:35413078-35413097 | None:intergenic | 25.0% |
| ! | GAGAAATTCAATTGAACTAT+CGG | + | chr4_1:35413079-35413098 | None:intergenic | 25.0% |
| ! | GAAAGACAACATTTACAATT+TGG | + | chr4_1:35413370-35413389 | None:intergenic | 25.0% |
| ! | TACTACCTAAAGCAAATTAT+AGG | - | chr4_1:35413562-35413581 | Msa0545340:five_prime_UTR | 25.0% |
| ! | ACTACCTAAAGCAAATTATA+GGG | - | chr4_1:35413563-35413582 | Msa0545340:five_prime_UTR | 25.0% |
| ! | ACAGCATGAAACATTATTAT+AGG | - | chr4_1:35413644-35413663 | Msa0545340:five_prime_UTR | 25.0% |
| ! | TTTGAATAGTTGTATAGAGT+TGG | + | chr4_1:35413676-35413695 | None:intergenic | 25.0% |
| AGTAAGAGAAATCTTGTGAA+GGG | + | chr4_1:35410004-35410023 | None:intergenic | 30.0% | |
| AAGTAAGAGAAATCTTGTGA+AGG | + | chr4_1:35410005-35410024 | None:intergenic | 30.0% | |
| !!! | GAGAAATTTTGGTCACTTTT+GGG | + | chr4_1:35410033-35410052 | None:intergenic | 30.0% |
| !! | TGAGAAATTTTGGTCACTTT+TGG | + | chr4_1:35410034-35410053 | None:intergenic | 30.0% |
| TGCCAAAAAATGGAAAGAAA+AGG | + | chr4_1:35410107-35410126 | None:intergenic | 30.0% | |
| ! | ATTTGGAACATGCCAAAAAA+TGG | + | chr4_1:35410117-35410136 | None:intergenic | 30.0% |
| GTGTGTTATATGATGTTTGA+AGG | + | chr4_1:35410149-35410168 | None:intergenic | 30.0% | |
| GATGCATATGAAAGAAAAGT+GGG | + | chr4_1:35410221-35410240 | None:intergenic | 30.0% | |
| AGATGCATATGAAAGAAAAG+TGG | + | chr4_1:35410222-35410241 | None:intergenic | 30.0% | |
| GTTTGTTTGATTATGACAAG+AGG | + | chr4_1:35410381-35410400 | None:intergenic | 30.0% | |
| AGATTTCACACAACAAAATC+AGG | - | chr4_1:35410426-35410445 | Msa0545340:CDS | 30.0% | |
| ! | TTTTGTATTCTTCAGCTTCA+GGG | - | chr4_1:35410609-35410628 | Msa0545340:CDS | 30.0% |
| TTGATTATGCAGAGAATGAA+AGG | - | chr4_1:35410952-35410971 | Msa0545340:CDS | 30.0% | |
| ATGAAAGGATTTGAAAGTGA+TGG | - | chr4_1:35410967-35410986 | Msa0545340:CDS | 30.0% | |
| CATTTAAACTGTCACTGATA+TGG | + | chr4_1:35411047-35411066 | None:intergenic | 30.0% | |
| TATCAGTGACAGTTTAAATG+AGG | - | chr4_1:35411047-35411066 | Msa0545340:CDS | 30.0% | |
| ATGTGGTGTACATATCATAT+TGG | - | chr4_1:35411279-35411298 | Msa0545340:CDS | 30.0% | |
| ! | GAATTTGAAACCTTGCTTAA+GGG | + | chr4_1:35411344-35411363 | None:intergenic | 30.0% |
| ! | TGAATTTGAAACCTTGCTTA+AGG | + | chr4_1:35411345-35411364 | None:intergenic | 30.0% |
| TTAATCTCTATCAGGAAACT+TGG | + | chr4_1:35411423-35411442 | None:intergenic | 30.0% | |
| GTCAATGATTAATCTCTATC+AGG | + | chr4_1:35411431-35411450 | None:intergenic | 30.0% | |
| AATACTTCACGACAATAACA+TGG | - | chr4_1:35411461-35411480 | Msa0545340:CDS | 30.0% | |
| AATTAATAACCATGACCTCA+TGG | - | chr4_1:35411746-35411765 | Msa0545340:intron | 30.0% | |
| TCAATTGAAAAAGTAACAGC+AGG | - | chr4_1:35411875-35411894 | Msa0545340:intron | 30.0% | |
| TAACAGCAGGCAAAATATAT+AGG | - | chr4_1:35411888-35411907 | Msa0545340:intron | 30.0% | |
| !!! | AAATTACATGTTTTGGTGGT+TGG | - | chr4_1:35411932-35411951 | Msa0545340:intron | 30.0% |
| ! | TTTGAAATGCAGAAGAATAG+TGG | - | chr4_1:35411983-35412002 | Msa0545340:intron | 30.0% |
| CTTGTATAAGTTTGTCAAGT+AGG | + | chr4_1:35412174-35412193 | None:intergenic | 30.0% | |
| ! | CTCTTCAGCTACATTTTTAA+CGG | + | chr4_1:35412302-35412321 | None:intergenic | 30.0% |
| AGTTAAGGAAACAAACTGAA+AGG | - | chr4_1:35412338-35412357 | Msa0545340:intron | 30.0% | |
| ! | TTTTACACTAGCCATTTCTA+GGG | + | chr4_1:35412380-35412399 | None:intergenic | 30.0% |
| AGAACTAGAGATGAAGAAAA+TGG | - | chr4_1:35412697-35412716 | Msa0545340:CDS | 30.0% | |
| GAACTAGAGATGAAGAAAAT+GGG | - | chr4_1:35412698-35412717 | Msa0545340:CDS | 30.0% | |
| AACTAGAGATGAAGAAAATG+GGG | - | chr4_1:35412699-35412718 | Msa0545340:CDS | 30.0% | |
| TCATGTTCAATTCAATGGAT+TGG | + | chr4_1:35412846-35412865 | None:intergenic | 30.0% | |
| TCTTATGAGAGAATTCAATG+GGG | - | chr4_1:35412967-35412986 | Msa0545340:CDS | 30.0% | |
| AAATTCCAGTTTCAAGAAGA+GGG | - | chr4_1:35413011-35413030 | Msa0545340:CDS | 30.0% | |
| TTGGATACCAATATTCAAGA+AGG | - | chr4_1:35413036-35413055 | Msa0545340:CDS | 30.0% | |
| ATCTTGACCTTCTTGAATAT+TGG | + | chr4_1:35413046-35413065 | None:intergenic | 30.0% | |
| AAATTCTCTTCTTGTCTTTG+AGG | - | chr4_1:35413224-35413243 | Msa0545340:CDS | 30.0% | |
| AATTCTCTTCTTGTCTTTGA+GGG | - | chr4_1:35413225-35413244 | Msa0545340:CDS | 30.0% | |
| ! | CTACTCAATAATTTTCATGC+CGG | + | chr4_1:35413501-35413520 | None:intergenic | 30.0% |
| GTAAGAGAAATCTTGTGAAG+GGG | + | chr4_1:35410003-35410022 | None:intergenic | 35.0% | |
| ! | AATGAGAAAGTCTTGTGAGA+GGG | + | chr4_1:35410067-35410086 | None:intergenic | 35.0% |
| !! | TTACAGCTTTTTCTCTCTTG+TGG | + | chr4_1:35410171-35410190 | None:intergenic | 35.0% |
| TGAAGATTTGGACATGTGAT+AGG | + | chr4_1:35410303-35410322 | None:intergenic | 35.0% | |
| !! | TCTCTCTAAGACCTTCTTTA+AGG | + | chr4_1:35410409-35410428 | None:intergenic | 35.0% |
| ATCCTCATCTTCATCTTCTT+TGG | - | chr4_1:35410463-35410482 | Msa0545340:CDS | 35.0% | |
| ! | CAGATTCAAGAGAGCTATTT+TGG | - | chr4_1:35410496-35410515 | Msa0545340:CDS | 35.0% |
| ! | CTTTTGTATTCTTCAGCTTC+AGG | - | chr4_1:35410608-35410627 | Msa0545340:CDS | 35.0% |
| TCCTTCTCTTTATCTTTGCA+GGG | + | chr4_1:35410638-35410657 | None:intergenic | 35.0% | |
| ATCCTTCTCTTTATCTTTGC+AGG | + | chr4_1:35410639-35410658 | None:intergenic | 35.0% | |
| !! | AAAACTTGCTGCTTCTTTGT+GGG | - | chr4_1:35410676-35410695 | Msa0545340:CDS | 35.0% |
| ! | TCAATGATTTGCATCCTTCA+AGG | - | chr4_1:35410702-35410721 | Msa0545340:CDS | 35.0% |
| ! | CAATGATTTGCATCCTTCAA+GGG | - | chr4_1:35410703-35410722 | Msa0545340:CDS | 35.0% |
| ! | TCTGAAATTGGACTGTTACA+TGG | + | chr4_1:35410845-35410864 | None:intergenic | 35.0% |
| ATGTAACAGTCCAATTTCAG+AGG | - | chr4_1:35410844-35410863 | Msa0545340:CDS | 35.0% | |
| GAGATAGAGATAAGCACATA+CGG | - | chr4_1:35411219-35411238 | Msa0545340:CDS | 35.0% | |
| GGTTTCAAATTCAAGTCTTG+TGG | - | chr4_1:35411352-35411371 | Msa0545340:CDS | 35.0% | |
| ! | TCAAATTCAAGTCTTGTGGA+TGG | - | chr4_1:35411356-35411375 | Msa0545340:CDS | 35.0% |
| GTAGTAGTTGAAAAGGAAGA+TGG | - | chr4_1:35411580-35411599 | Msa0545340:CDS | 35.0% | |
| GACATCGAAGAAGATTCTTA+AGG | - | chr4_1:35412060-35412079 | Msa0545340:intron | 35.0% | |
| !! | AAAGCGTTTTGCAGAAGAAA+AGG | - | chr4_1:35412237-35412256 | Msa0545340:intron | 35.0% |
| TTACAGTGGAGAAGAAGTTA+AGG | - | chr4_1:35412323-35412342 | Msa0545340:intron | 35.0% | |
| TAAGAAGATTGCCCTAGAAA+TGG | - | chr4_1:35412366-35412385 | Msa0545340:intron | 35.0% | |
| ! | CTTTTACACTAGCCATTTCT+AGG | + | chr4_1:35412381-35412400 | None:intergenic | 35.0% |
| AAGTATGTGAAGAGCTTGAA+AGG | - | chr4_1:35412413-35412432 | Msa0545340:intron | 35.0% | |
| AGTATGTGAAGAGCTTGAAA+GGG | - | chr4_1:35412414-35412433 | Msa0545340:intron | 35.0% | |
| ATTTGTGATGAACTAGCTAG+AGG | - | chr4_1:35412466-35412485 | Msa0545340:intron | 35.0% | |
| !! | ATGAACTAGCTAGAGGTATT+GGG | - | chr4_1:35412473-35412492 | Msa0545340:intron | 35.0% |
| TGAAGAAGTGGAAAAAGAGA+GGG | - | chr4_1:35412546-35412565 | Msa0545340:intron | 35.0% | |
| AGAGGCTAAGTATCAATTTG+AGG | - | chr4_1:35412624-35412643 | Msa0545340:CDS | 35.0% | |
| ! | TCGTTGAATTTTGTAGACTC+CGG | + | chr4_1:35412733-35412752 | None:intergenic | 35.0% |
| TTCCAAAATGCAGAGTTTGA+AGG | - | chr4_1:35412787-35412806 | Msa0545340:intron | 35.0% | |
| GTTTGAAGGACATAATGACT+CGG | - | chr4_1:35412801-35412820 | Msa0545340:intron | 35.0% | |
| AACATGAATAACGGCAATAG+AGG | - | chr4_1:35412859-35412878 | Msa0545340:CDS | 35.0% | |
| ! | TCAACTGACAAAGAAAGTAC+AGG | - | chr4_1:35412937-35412956 | Msa0545340:CDS | 35.0% |
| ! | CAACTGACAAAGAAAGTACA+GGG | - | chr4_1:35412938-35412957 | Msa0545340:CDS | 35.0% |
| GAAATTCCAGTTTCAAGAAG+AGG | - | chr4_1:35413010-35413029 | Msa0545340:CDS | 35.0% | |
| CTTGAAATAGACCTATTGCT+TGG | + | chr4_1:35413138-35413157 | None:intergenic | 35.0% | |
| ! | AATTTGAAGCAAGAAGCTGA+AGG | - | chr4_1:35413252-35413271 | Msa0545340:CDS | 35.0% |
| TCATTTGTTCACATGTGTAG+TGG | + | chr4_1:35413524-35413543 | None:intergenic | 35.0% | |
| !! | GAGTCCCTATAATTTGCTTT+AGG | + | chr4_1:35413570-35413589 | None:intergenic | 35.0% |
| ! | GAATGAGAAAGTCTTGTGAG+AGG | + | chr4_1:35410068-35410087 | None:intergenic | 40.0% |
| AGCCAAAGAAGATGAAGATG+AGG | + | chr4_1:35410468-35410487 | None:intergenic | 40.0% | |
| !!! | TTCAAGAGAGCTATTTTGGC+TGG | - | chr4_1:35410500-35410519 | Msa0545340:CDS | 40.0% |
| !!! | GCTATTTTGGCTGGAAAGAA+AGG | - | chr4_1:35410509-35410528 | Msa0545340:CDS | 40.0% |
| !!! | ATTTTGGCTGGAAAGAAAGG+AGG | - | chr4_1:35410512-35410531 | Msa0545340:CDS | 40.0% |
| !! | TTTTGGCTGGAAAGAAAGGA+GGG | - | chr4_1:35410513-35410532 | Msa0545340:CDS | 40.0% |
| TACTACCTCTTCACCTTCTA+TGG | - | chr4_1:35410568-35410587 | Msa0545340:CDS | 40.0% | |
| TGTGTAGTGTTCTCCATAGA+AGG | + | chr4_1:35410584-35410603 | None:intergenic | 40.0% | |
| ACCCTGCAAAGATAAAGAGA+AGG | - | chr4_1:35410634-35410653 | Msa0545340:CDS | 40.0% | |
| !! | GAAAACTTGCTGCTTCTTTG+TGG | - | chr4_1:35410675-35410694 | Msa0545340:CDS | 40.0% |
| !! | TGTCAAGATCAGGTTTGTTG+AGG | - | chr4_1:35410804-35410823 | Msa0545340:CDS | 40.0% |
| TTACATGGATCTGACATAGG+TGG | + | chr4_1:35410830-35410849 | None:intergenic | 40.0% | |
| CTGTTACATGGATCTGACAT+AGG | + | chr4_1:35410833-35410852 | None:intergenic | 40.0% | |
| GTTACAGAAGAACAGTGTCA+GGG | - | chr4_1:35410989-35411008 | Msa0545340:CDS | 40.0% | |
| TTATCTCATCCACTTCGTTC+TGG | - | chr4_1:35411012-35411031 | Msa0545340:CDS | 40.0% | |
| CACTCATACAAGCGTAATGT+TGG | + | chr4_1:35411306-35411325 | None:intergenic | 40.0% | |
| CAACATTACGCTTGTATGAG+TGG | - | chr4_1:35411304-35411323 | Msa0545340:CDS | 40.0% | |
| TTGTATGAGTGGAACTAGAC+TGG | - | chr4_1:35411315-35411334 | Msa0545340:CDS | 40.0% | |
| TGTATGAGTGGAACTAGACT+GGG | - | chr4_1:35411316-35411335 | Msa0545340:CDS | 40.0% | |
| TCTCTATCAGGAAACTTGGT+TGG | + | chr4_1:35411419-35411438 | None:intergenic | 40.0% | |
| !! | AGGAAGATGGACTGCAATAA+TGG | - | chr4_1:35411593-35411612 | Msa0545340:CDS | 40.0% |
| !!! | TAGTAGCTTTTCAGGTGCAT+TGG | - | chr4_1:35411702-35411721 | Msa0545340:intron | 40.0% |
| GATGAGATCAGTGATTTCTG+AGG | + | chr4_1:35411774-35411793 | None:intergenic | 40.0% | |
| !! | TACTTCTAGCTTCCTTCAGA+TGG | + | chr4_1:35412033-35412052 | None:intergenic | 40.0% |
| AGAGAAGCAATCATCGACAA+TGG | - | chr4_1:35412105-35412124 | Msa0545340:intron | 40.0% | |
| CCATATACTCAATGTCGTTC+TGG | + | chr4_1:35412216-35412235 | None:intergenic | 40.0% | |
| CCAGAACGACATTGAGTATA+TGG | - | chr4_1:35412213-35412232 | Msa0545340:intron | 40.0% | |
| ! | GATGAACTAGCTAGAGGTAT+TGG | - | chr4_1:35412472-35412491 | Msa0545340:intron | 40.0% |
| !! | TGAACTAGCTAGAGGTATTG+GGG | - | chr4_1:35412474-35412493 | Msa0545340:intron | 40.0% |
| GGAGGAAATGAAAAAGGAGT+CGG | - | chr4_1:35412513-35412532 | Msa0545340:intron | 40.0% | |
| GGTTAAAGTTCGTGAAGAAG+TGG | - | chr4_1:35412534-35412553 | Msa0545340:intron | 40.0% | |
| GTGAAGAAGTGGAAAAAGAG+AGG | - | chr4_1:35412545-35412564 | Msa0545340:intron | 40.0% | |
| AGTCCAAATGAAGCTTTCAG+AGG | - | chr4_1:35412606-35412625 | Msa0545340:intron | 40.0% | |
| ! | TAGCCTCTGAAAGCTTCATT+TGG | + | chr4_1:35412612-35412631 | None:intergenic | 40.0% |
| ! | GTCCTTCAAACTCTGCATTT+TGG | + | chr4_1:35412792-35412811 | None:intergenic | 40.0% |
| ATGGAGTTATCCAAGCGAAA+AGG | - | chr4_1:35412888-35412907 | Msa0545340:CDS | 40.0% | |
| AGTTATCCAAGCGAAAAGGA+TGG | - | chr4_1:35412892-35412911 | Msa0545340:CDS | 40.0% | |
| ! | TTTTGACCATCCTTTTCGCT+TGG | + | chr4_1:35412901-35412920 | None:intergenic | 40.0% |
| CAAATCCCTCTTCTTGAAAC+TGG | + | chr4_1:35413019-35413038 | None:intergenic | 40.0% | |
| CAGTTTCAAGAAGAGGGATT+TGG | - | chr4_1:35413017-35413036 | Msa0545340:CDS | 40.0% | |
| TTGAATTTCTCTCTCGAGCT+CGG | - | chr4_1:35413088-35413107 | Msa0545340:CDS | 40.0% | |
| CTTTCACTAGTACACTGCAA+AGG | + | chr4_1:35413195-35413214 | None:intergenic | 40.0% | |
| GAACAAGTTGTTTGATCCAC+CGG | - | chr4_1:35413479-35413498 | Msa0545340:five_prime_UTR | 40.0% | |
| ! | CTCAATAATTTTCATGCCGG+TGG | + | chr4_1:35413498-35413517 | None:intergenic | 40.0% |
| GTGAAGGGGAAGAGAGTAAA+CGG | + | chr4_1:35409989-35410008 | None:intergenic | 45.0% | |
| !! | GTAGTACTAGTCTTCCACAG+TGG | + | chr4_1:35410554-35410573 | None:intergenic | 45.0% |
| GTTCTCCATAGAAGGTGAAG+AGG | + | chr4_1:35410576-35410595 | None:intergenic | 45.0% | |
| AAGTCCTTCTTGACCCTTGA+AGG | + | chr4_1:35410719-35410738 | None:intergenic | 45.0% | |
| TGAGCAAATGAGAAGCTGCA+AGG | - | chr4_1:35410745-35410764 | Msa0545340:CDS | 45.0% | |
| GCTAAGAGCTTGTCAAGATC+AGG | - | chr4_1:35410794-35410813 | Msa0545340:CDS | 45.0% | |
| GGTTACAGAAGAACAGTGTC+AGG | - | chr4_1:35410988-35411007 | Msa0545340:CDS | 45.0% | |
| TCTAACGGTCTCAACTCTCA+TGG | + | chr4_1:35411638-35411657 | None:intergenic | 45.0% | |
| !!! | ACATGTTTTGGTGGTTGGCA+AGG | - | chr4_1:35411937-35411956 | Msa0545340:intron | 45.0% |
| GAAGAATAGTGGCAAATGCG+CGG | - | chr4_1:35411994-35412013 | Msa0545340:intron | 45.0% | |
| TGTAGCTGAAGAGCTTACAG+TGG | - | chr4_1:35412309-35412328 | Msa0545340:intron | 45.0% | |
| GCTGGTGGAGGAAATGAAAA+AGG | - | chr4_1:35412507-35412526 | Msa0545340:intron | 45.0% | |
| AGAAAATGGGGATGCTTCTC+CGG | - | chr4_1:35412711-35412730 | Msa0545340:intron | 45.0% | |
| ! | AGGACATAATGACTCGGATG+AGG | - | chr4_1:35412807-35412826 | Msa0545340:intron | 45.0% |
| ACGGCAATAGAGGATCAGAA+TGG | - | chr4_1:35412869-35412888 | Msa0545340:CDS | 45.0% | |
| ! | CTGACAAAGAAAGTACAGGG+AGG | - | chr4_1:35412941-35412960 | Msa0545340:CDS | 45.0% |
| ! | CTAGTCTTCCACAGTGGAAC+TGG | + | chr4_1:35410548-35410567 | None:intergenic | 50.0% |
| GCATCCTTCAAGGGTCAAGA+AGG | - | chr4_1:35410712-35410731 | Msa0545340:CDS | 50.0% | |
| TCATCCACTTCGTTCTGGTG+TGG | - | chr4_1:35411017-35411036 | Msa0545340:CDS | 50.0% | |
| AGACTGGGATCCCTTAAGCA+AGG | - | chr4_1:35411331-35411350 | Msa0545340:CDS | 50.0% | |
| GGATGGAACTCCACTAAACG+TGG | - | chr4_1:35411373-35411392 | Msa0545340:CDS | 50.0% | |
| TGGAGTTTGGCCACGTTTAG+TGG | + | chr4_1:35411386-35411405 | None:intergenic | 50.0% | |
| TGGCCAAACTCCACTAAACG+TGG | - | chr4_1:35411393-35411412 | Msa0545340:CDS | 50.0% | |
| TGGCCACGTTTAGTGGAGTT+TGG | + | chr4_1:35411379-35411398 | None:intergenic | 50.0% | |
| ! | ACTTGGTTGGCCACGTTTAG+TGG | + | chr4_1:35411406-35411425 | None:intergenic | 50.0% |
| ! | GTGATTTCTGAGGAGCCATG+AGG | + | chr4_1:35411764-35411783 | None:intergenic | 50.0% |
| AATAGTGGCAAATGCGCGGT+TGG | - | chr4_1:35411998-35412017 | Msa0545340:intron | 50.0% | |
| TGGAGTGAAGAGCCATCTGA+AGG | - | chr4_1:35412018-35412037 | Msa0545340:intron | 50.0% | |
| CTCTCGGAAGTGAGCTTGAT+CGG | - | chr4_1:35412140-35412159 | Msa0545340:intron | 50.0% | |
| TCTCGGAAGTGAGCTTGATC+GGG | - | chr4_1:35412141-35412160 | Msa0545340:intron | 50.0% | |
| AGTGAGCTTGATCGGGTTTG+CGG | - | chr4_1:35412148-35412167 | Msa0545340:intron | 50.0% | |
| ! | GTTAGCAGATGTTTTGCGCG+AGG | - | chr4_1:35412579-35412598 | Msa0545340:intron | 50.0% |
| AGCTCGGATACAAGACGATG+AGG | - | chr4_1:35413104-35413123 | Msa0545340:CDS | 50.0% | |
| CGGATACAAGACGATGAGGA+CGG | - | chr4_1:35413108-35413127 | Msa0545340:CDS | 50.0% | |
| AGGACGGAACTCCAAGCAAT+AGG | - | chr4_1:35413124-35413143 | Msa0545340:CDS | 50.0% | |
| CTTCCACAGTGGAACTGGTG+TGG | + | chr4_1:35410543-35410562 | None:intergenic | 55.0% | |
| TCTGAGGAGCCATGAGGTCA+TGG | + | chr4_1:35411758-35411777 | None:intergenic | 55.0% | |
| ATCGACAATGGCCCTCACCT+TGG | - | chr4_1:35412117-35412136 | Msa0545340:intron | 55.0% | |
| ACTTCCGAGAGCCAAGGTGA+GGG | + | chr4_1:35412131-35412150 | None:intergenic | 55.0% | |
| AAGCTCACTTCCGAGAGCCA+AGG | + | chr4_1:35412137-35412156 | None:intergenic | 55.0% | |
| TATTGGGGAAGACAGAGCGC+TGG | - | chr4_1:35412489-35412508 | Msa0545340:intron | 55.0% | |
| CCACAGTGGAACTGGTGTGG+TGG | + | chr4_1:35410540-35410559 | None:intergenic | 60.0% | |
| CCACCACACCAGTTCCACTG+TGG | - | chr4_1:35410537-35410556 | Msa0545340:CDS | 60.0% | |
| GCGTCCACACCAGAACGAAG+TGG | + | chr4_1:35411024-35411043 | None:intergenic | 60.0% | |
| ! | ATGGCCCTCACCTTGGCTCT+CGG | - | chr4_1:35412124-35412143 | Msa0545340:intron | 60.0% |
| CACTTCCGAGAGCCAAGGTG+AGG | + | chr4_1:35412132-35412151 | None:intergenic | 60.0% | |
| !! | TGGGGAAGACAGAGCGCTGG+TGG | - | chr4_1:35412492-35412511 | Msa0545340:intron | 65.0% |
| !! | GGAAGACAGAGCGCTGGTGG+AGG | - | chr4_1:35412495-35412514 | Msa0545340:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 35409977 | 35413713 | 35409977 | ID=Msa0545340;Name=Msa0545340 |
| chr4_1 | mRNA | 35409977 | 35413713 | 35409977 | ID=Msa0545340-mRNA-1;Parent=Msa0545340;Name=Msa0545340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=397|1|1|1|1|1|3|393|640 |
| chr4_1 | exon | 35409977 | 35411695 | 35409977 | ID=Msa0545340-mRNA-1:exon:8984;Parent=Msa0545340-mRNA-1 |
| chr4_1 | exon | 35412622 | 35412726 | 35412622 | ID=Msa0545340-mRNA-1:exon:8983;Parent=Msa0545340-mRNA-1 |
| chr4_1 | exon | 35412825 | 35413713 | 35412825 | ID=Msa0545340-mRNA-1:exon:8982;Parent=Msa0545340-mRNA-1 |
| chr4_1 | five_prime_UTR | 35413317 | 35413713 | 35413317 | ID=Msa0545340-mRNA-1:five_prime_utr;Parent=Msa0545340-mRNA-1 |
| chr4_1 | CDS | 35412825 | 35413316 | 35412825 | ID=Msa0545340-mRNA-1:cds;Parent=Msa0545340-mRNA-1 |
| chr4_1 | CDS | 35412622 | 35412726 | 35412622 | ID=Msa0545340-mRNA-1:cds;Parent=Msa0545340-mRNA-1 |
| chr4_1 | CDS | 35410370 | 35411695 | 35410370 | ID=Msa0545340-mRNA-1:cds;Parent=Msa0545340-mRNA-1 |
| chr4_1 | three_prime_UTR | 35409977 | 35410369 | 35409977 | ID=Msa0545340-mRNA-1:three_prime_utr;Parent=Msa0545340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
