AlfalfaGEDB | Msa1196100

M. sativa cultivar zhongmu-4 / Msa1196100

KEGG: K14505
GO: GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627
PFAM: PF00134.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196100	XP_013457455.1	98.050	359	7	0	1	359	1	359	0.0	726

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196100	sp\|Q9FGQ7\|CCD32_ARATH	51.389	360	149	8	11	359	23	367	8.65e-113	335

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196100	A0A072UQ65	98.050	359	7	0	1	359	1	359	0.0	726

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000330	Msa1196100	0.856732	2.637190e-62	-8.615850e-47
Msa0016670	Msa1196100	0.802555	5.305919e-49	-8.615850e-47
Msa0036850	Msa1196100	0.836993	6.754936e-57	-8.615850e-47
Msa0039790	Msa1196100	0.810366	1.194902e-50	-8.615850e-47
Msa0115160	Msa1196100	0.807647	4.564796e-50	-8.615850e-47
Msa0134180	Msa1196100	0.835015	2.145714e-56	-8.615850e-47
Msa0180930	Msa1196100	0.836970	6.845603e-57	-8.615850e-47
Msa0264870	Msa1196100	0.817048	4.034942e-52	-8.615850e-47
Msa0292400	Msa1196100	0.803732	3.028632e-49	-8.615850e-47
Msa0302380	Msa1196100	0.802440	5.606081e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196100	MtrunA17_Chr4g0053381	98.050	359	7	0	1	359	1	359	0.0	726
Msa1196100	MtrunA17_Chr1g0208231	54.286	315	134	5	47	355	68	378	2.55e-114	337
Msa1196100	MtrunA17_Chr3g0134261	56.436	303	124	6	42	340	46	344	2.19e-109	323
Msa1196100	MtrunA17_Chr4g0041721	36.667	240	140	6	81	315	91	323	1.09e-46	162
Msa1196100	MtrunA17_Chr3g0133211	36.842	266	151	5	8	258	10	273	2.27e-46	161
Msa1196100	MtrunA17_Chr5g0412471	32.476	311	187	10	8	308	11	308	2.19e-43	153
Msa1196100	MtrunA17_Chr5g0414271	38.075	239	131	6	52	280	43	274	3.43e-40	144
Msa1196100	MtrunA17_Chr8g0364521	38.049	205	114	3	81	279	93	290	4.51e-35	131
Msa1196100	MtrunA17_Chr5g0427191	30.201	298	192	8	53	341	55	345	7.56e-33	125
Msa1196100	MtrunA17_Chr8g0367661	32.646	291	153	12	52	312	61	338	2.13e-30	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1196100	AT5G67260.1	51.389	360	149	8	11	359	23	367	8.79e-114	335
Msa1196100	AT5G67260.2	51.143	350	145	8	11	349	23	357	1.92e-108	323
Msa1196100	AT3G50070.1	48.747	359	161	7	8	359	19	361	3.10e-101	303
Msa1196100	AT4G34160.1	50.505	297	133	5	3	294	11	298	6.41e-94	285
Msa1196100	AT2G22490.1	37.918	269	146	10	52	308	64	323	1.96e-44	157
Msa1196100	AT2G22490.2	36.131	274	145	10	52	308	64	324	6.25e-43	153
Msa1196100	AT5G65420.4	37.247	247	134	7	8	246	9	242	3.34e-42	148
Msa1196100	AT5G65420.1	37.247	247	134	7	8	246	9	242	1.15e-41	148
Msa1196100	AT5G65420.2	40.513	195	101	5	8	197	9	193	2.47e-41	145
Msa1196100	AT1G70210.1	34.507	284	149	9	9	280	23	281	1.55e-39	143

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Find 100 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCATCGTTAATCAAAT+GGG	0.446028	8_1:+44814505	None:intergenic
AAAATGAACAGCAGAGAGAT+TGG	0.439244	8_1:+44812854	None:intergenic
AAACAGGCTGTTTGCCGCCT+AGG	0.439213	8_1:+44815041	None:intergenic
AACAGGCTGTTTGCCGCCTA+GGG	0.485686	8_1:+44815042	None:intergenic
AACCCATGTGCCACTTCTTT+TGG	0.207318	8_1:-44814270	Msa1196100:CDS
AACGCTCCATCTCCTTCCCT+AGG	0.586681	8_1:-44815058	Msa1196100:five_prime_UTR
AAGAATGAAATTGGTGTCAC+TGG	0.474814	8_1:+44814016	None:intergenic
AAGTTATTAGTTTGCGATGA+TGG	0.406328	8_1:-44813465	Msa1196100:CDS
AATCCAAAAGAAGTGGCACA+TGG	0.596075	8_1:+44814267	None:intergenic
AATGGTTTCAGAATCGGTGA+GGG	0.604541	8_1:+44814637	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTGAGTAATGAAAACAAA+GGG	+	chr8_1:44813000-44813019	None:intergenic	30.0%
TGTTTCATTGTGAGAAAGAA+GGG	+	chr8_1:44813142-44813161	None:intergenic	30.0%
TTGTTTCATTGTGAGAAAGA+AGG	+	chr8_1:44813143-44813162	None:intergenic	30.0%
ACTTGAAAATCCAAAAGAAG+TGG	+	chr8_1:44813632-44813651	None:intergenic	30.0%
TGTTATCTACATTGAAATGG+AGG	-	chr8_1:44813844-44813863	Msa1196100:intron	30.0%
ATGTACTCAGTTGCATTAAA+TGG	+	chr8_1:44814203-44814222	None:intergenic	30.0%
TCCATTCATCTTCAAATGTT+TGG	+	chr8_1:44814818-44814837	None:intergenic	30.0%
ATTTGAAGATGAATGGAATG+AGG	-	chr8_1:44814821-44814840	Msa1196100:five_prime_UTR	30.0%
TTAAACAACAAAGTGGATGA+AGG	+	chr8_1:44814861-44814880	None:intergenic	30.0%
GAGTGAGTAATGAAAACAAA+GGG	+	chr8_1:44813000-44813019	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	44812818	44815093	44812818	ID=Msa1196100;Name=Msa1196100
chr8_1	mRNA	44812818	44815093	44812818	ID=Msa1196100-mRNA-1;Parent=Msa1196100;Name=Msa1196100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=373\|1\|1\|1\|1\|1\|4\|418\|359
chr8_1	exon	44812818	44813520	44812818	ID=Msa1196100-mRNA-1:exon:14428;Parent=Msa1196100-mRNA-1
chr8_1	exon	44813655	44813788	44813655	ID=Msa1196100-mRNA-1:exon:14427;Parent=Msa1196100-mRNA-1
chr8_1	exon	44813924	44814125	44813924	ID=Msa1196100-mRNA-1:exon:14426;Parent=Msa1196100-mRNA-1
chr8_1	exon	44814262	44815093	44814262	ID=Msa1196100-mRNA-1:exon:14425;Parent=Msa1196100-mRNA-1
chr8_1	five_prime_UTR	44814721	44815093	44814721	ID=Msa1196100-mRNA-1:five_prime_utr;Parent=Msa1196100-mRNA-1
chr8_1	CDS	44814262	44814720	44814262	ID=Msa1196100-mRNA-1:cds;Parent=Msa1196100-mRNA-1
chr8_1	CDS	44813924	44814125	44813924	ID=Msa1196100-mRNA-1:cds;Parent=Msa1196100-mRNA-1
chr8_1	CDS	44813655	44813788	44813655	ID=Msa1196100-mRNA-1:cds;Parent=Msa1196100-mRNA-1
chr8_1	CDS	44813236	44813520	44813236	ID=Msa1196100-mRNA-1:cds;Parent=Msa1196100-mRNA-1
chr8_1	three_prime_UTR	44812818	44813235	44812818	ID=Msa1196100-mRNA-1:three_prime_utr;Parent=Msa1196100-mRNA-1

Gene Sequence

>Msa1196100

ATGTCTCAACCTCAATCTCCTTCCTTTCTCTGTGAAGAACAAAACACCTTCGAAGATGAATCCCTCACCGATTCTGAAACCATTACCAACGACCCATCTGCTACAAAGCTTCAATCTTTATCGAATTTGTTCAACAATGATATGTTTTGGGAAGACGATGAAGTTCTTTCGTTAATCATGAAAGAGAAAGAAACCCATTTGATTAACGATGATTTTGTTATTGATGGATCTTTGAATGAGTCTCGTGTTGAAGGTGTGAATTGGCTTTCTAGAGTTTGTGCTCATTATGGGTTTTCTACTTTGACCACTGTTCTTGCTGTCAACTACTTTGATAGATTCGTTACTAGTTTGAAGTTTCAAAAGGATAAGCCTTGGATGACTCAGCTTACTGCTGTTGCTTGTTTGTCTCTTGCGGCTAAAATTGAAGAAACCCATGTGCCACTTCTTTTGGATTTTCAAGTTGAGGAATCTAGATTTGTGTTTGAAGCTAAAACTATACAAAGAATGGAGCTTTTGGTGTTATCTACATTGAAATGGAGGATGCATCCAGTGACACCAATTTCATTCTTTGAACACATTGTTAGAAGACTTGGTTTGAAGAGCCGTTTGCATTGGGAGTTTATGTGGCGTTGTGAGAAGGTTCTTCTTCATGTCATTGTTGATTCAAGGGTTATGATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACAATGATCCATGTAATTAAAGAGATTGAACCATTTAATGCAACTGAGTACATTGAACAACTCTTGGGTTTACTAAAGATTAGTGAGGAACAAGTGAATCAGTGCTACAAACTTATGCTGAAGTTATTAGTTTGCGATGATGGCATTTACAGTCTTCACCAGAAACGTAAGCGCGTATCTGAACCAGGTAGTCCGGGTGGTGTCATTGATGCATCTTTCAGCTGCGATAGCTCAAATGATTCATGGACTGCAGCATCGTCGGTTTCACTTTCACTGCAGCCGATGTTCAAGAGGAGCAGAGCTCAAGACCAGCAGATGCGATTGCCTTCGGTTAATCGTGTGTCTATTGATGTTCTTCATAGCCCTCGTTAA

Protein sequence

>Msa1196100

MSQPQSPSFLCEEQNTFEDESLTDSETITNDPSATKLQSLSNLFNNDMFWEDDEVLSLIMKEKETHLINDDFVIDGSLNESRVEGVNWLSRVCAHYGFSTLTTVLAVNYFDRFVTSLKFQKDKPWMTQLTAVACLSLAAKIEETHVPLLLDFQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFMWRCEKVLLHVIVDSRVMMSYLPSTLAAATMIHVIKEIEPFNATEYIEQLLGLLKISEEQVNQCYKLMLKLLVCDDGIYSLHQKRKRVSEPGSPGGVIDASFSCDSSNDSWTAASSVSLSLQPMFKRSRAQDQQMRLPSVNRVSIDVLHSPR*