Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462980 | XP_003600847.1 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.15e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462980 | sp|Q9M047|WLI2B_ARATH | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.38e-112 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462980 | B7FME7 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 5.49e-138 | 392 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0462980 | TF | LIM |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089080 | Msa0462980 | 0.819952 | 8.864201e-53 | -8.615850e-47 |
| Msa0102130 | Msa0462980 | -0.807570 | 4.738623e-50 | -8.615850e-47 |
| Msa0135890 | Msa0462980 | 0.804230 | 2.386784e-49 | -8.615850e-47 |
| Msa0188500 | Msa0462980 | -0.832613 | 8.553552e-56 | -8.615850e-47 |
| Msa0200840 | Msa0462980 | -0.812362 | 4.403960e-51 | -8.615850e-47 |
| Msa0223190 | Msa0462980 | -0.831129 | 1.987848e-55 | -8.615850e-47 |
| Msa0230980 | Msa0462980 | -0.839199 | 1.827971e-57 | -8.615850e-47 |
| Msa0378670 | Msa0462980 | -0.800511 | 1.392790e-48 | -8.615850e-47 |
| Msa0378700 | Msa0462980 | -0.807955 | 3.924237e-50 | -8.615850e-47 |
| Msa0416390 | Msa0462980 | 0.839802 | 1.274129e-57 | -8.615850e-47 |
| Msa0448400 | Msa0462980 | -0.800853 | 1.185776e-48 | -8.615850e-47 |
| Msa0456480 | Msa0462980 | -0.806667 | 7.359676e-50 | -8.615850e-47 |
| Msa0462980 | Msa0476540 | 0.801745 | 7.788604e-49 | -8.615850e-47 |
| Msa0462980 | Msa0508580 | 0.982975 | 1.702384e-156 | -8.615850e-47 |
| Msa0462980 | Msa0521940 | 0.814962 | 1.179422e-51 | -8.615850e-47 |
| Msa0462980 | Msa0522300 | 0.800717 | 1.264281e-48 | -8.615850e-47 |
| Msa0462980 | Msa0549330 | -0.806272 | 8.913905e-50 | -8.615850e-47 |
| Msa0462980 | Msa0643020 | 0.815631 | 8.375422e-52 | -8.615850e-47 |
| Msa0462980 | Msa0644770 | 0.823404 | 1.410691e-53 | -8.615850e-47 |
| Msa0462980 | Msa0705050 | -0.826856 | 2.155949e-54 | -8.615850e-47 |
| Msa0462980 | Msa0715510 | 0.800931 | 1.143021e-48 | -8.615850e-47 |
| Msa0462980 | Msa0736500 | 0.813993 | 1.931517e-51 | -8.615850e-47 |
| Msa0462980 | Msa0782030 | -0.800212 | 1.602283e-48 | -8.615850e-47 |
| Msa0462980 | Msa0815590 | 0.801562 | 8.490251e-49 | -8.615850e-47 |
| Msa0462980 | Msa0861560 | -0.813588 | 2.372631e-51 | -8.615850e-47 |
| Msa0462980 | Msa0899730 | -0.807166 | 5.772668e-50 | -8.615850e-47 |
| Msa0462980 | Msa0929900 | 0.807176 | 5.744548e-50 | -8.615850e-47 |
| Msa0462980 | Msa0930950 | -0.806471 | 8.094920e-50 | -8.615850e-47 |
| Msa0462980 | Msa0975560 | -0.812845 | 3.452856e-51 | -8.615850e-47 |
| Msa0462980 | Msa0982590 | -0.832655 | 8.352860e-56 | -8.615850e-47 |
| Msa0462980 | Msa1053990 | 0.817291 | 3.559445e-52 | -8.615850e-47 |
| Msa0462980 | Msa1102180 | -0.809777 | 1.600099e-50 | -8.615850e-47 |
| Msa0462980 | Msa1160780 | 0.801599 | 8.346585e-49 | -8.615850e-47 |
| Msa0462980 | Msa1211260 | -0.808527 | 2.965240e-50 | -8.615850e-47 |
| Msa0462980 | Msa1211390 | -0.824496 | 7.820993e-54 | -8.615850e-47 |
| Msa0462980 | Msa1240060 | 0.837861 | 4.047784e-57 | -8.615850e-47 |
| Msa0462980 | Msa1242990 | -0.815125 | 1.084878e-51 | -8.615850e-47 |
| Msa0462980 | Msa1281370 | 0.819744 | 9.888783e-53 | -8.615850e-47 |
| Msa0462980 | Msa1306700 | -0.829016 | 6.515618e-55 | -8.615850e-47 |
| Msa0462980 | Msa1320530 | 0.832555 | 8.841279e-56 | -8.615850e-47 |
| Msa0462980 | Msa1323920 | -0.809183 | 2.146498e-50 | -8.615850e-47 |
| Msa0462980 | Msa1342400 | -0.822059 | 2.900251e-53 | -8.615850e-47 |
| Msa0462980 | Msa1346540 | -0.815481 | 9.044307e-52 | -8.615850e-47 |
| Msa0462980 | Msa1349850 | -0.800861 | 1.181497e-48 | -8.615850e-47 |
| Msa0462980 | Msa1413900 | -0.810218 | 1.285687e-50 | -8.615850e-47 |
| Msa0462980 | Msa1427180 | -0.833376 | 5.525101e-56 | -8.615850e-47 |
| Msa0462980 | Msa1452200 | -0.809105 | 2.229870e-50 | -8.615850e-47 |
| Msa0462980 | Msa1460970 | 0.821932 | 3.104332e-53 | -8.615850e-47 |
| Msa0264420 | Msa0462980 | -0.827958 | 1.173275e-54 | -8.615850e-47 |
| Msa0270460 | Msa0462980 | -0.840243 | 9.778266e-58 | -8.615850e-47 |
| Msa0302310 | Msa0462980 | -0.813614 | 2.341051e-51 | -8.615850e-47 |
| Msa0309060 | Msa0462980 | -0.831929 | 1.263015e-55 | -8.615850e-47 |
| Msa0339670 | Msa0462980 | -0.824379 | 8.334519e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462980 | MtrunA17_Chr3g0113051 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 1.06e-141 | 392 |
| Msa0462980 | MtrunA17_Chr7g0247111 | 62.295 | 183 | 65 | 2 | 1 | 183 | 1 | 179 | 3.69e-85 | 250 |
| Msa0462980 | MtrunA17_Chr8g0349391 | 64.246 | 179 | 58 | 2 | 1 | 179 | 1 | 173 | 3.09e-83 | 245 |
| Msa0462980 | MtrunA17_Chr8g0386501 | 59.563 | 183 | 66 | 1 | 1 | 183 | 1 | 175 | 2.26e-75 | 225 |
| Msa0462980 | MtrunA17_Chr1g0152431 | 58.757 | 177 | 69 | 2 | 1 | 175 | 1 | 175 | 2.28e-70 | 212 |
| Msa0462980 | MtrunA17_Chr4g0059371 | 53.591 | 181 | 81 | 2 | 2 | 181 | 3 | 181 | 8.68e-67 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462980 | AT3G55770.3 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0462980 | AT3G55770.5 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0462980 | AT3G55770.2 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0462980 | AT3G55770.1 | 83.696 | 184 | 28 | 1 | 1 | 184 | 1 | 182 | 7.50e-113 | 320 |
| Msa0462980 | AT2G39900.1 | 82.609 | 184 | 29 | 2 | 1 | 183 | 1 | 182 | 5.46e-110 | 313 |
| Msa0462980 | AT2G39900.1 | 45.455 | 88 | 48 | 0 | 103 | 190 | 3 | 90 | 5.89e-22 | 89.0 |
| Msa0462980 | AT3G55770.7 | 70.642 | 218 | 28 | 2 | 1 | 184 | 1 | 216 | 5.53e-105 | 301 |
| Msa0462980 | AT3G55770.7 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 6.92e-22 | 89.4 |
| Msa0462980 | AT2G45800.1 | 64.706 | 187 | 62 | 2 | 1 | 187 | 1 | 183 | 1.66e-85 | 251 |
| Msa0462980 | AT1G01780.1 | 61.290 | 186 | 66 | 3 | 1 | 186 | 1 | 180 | 6.31e-83 | 244 |
| Msa0462980 | AT1G01780.1 | 49.425 | 87 | 44 | 0 | 3 | 89 | 97 | 183 | 1.79e-23 | 92.8 |
| Msa0462980 | AT3G61230.1 | 59.890 | 182 | 69 | 2 | 2 | 183 | 3 | 180 | 3.72e-80 | 238 |
| Msa0462980 | AT1G10200.1 | 59.322 | 177 | 68 | 2 | 1 | 175 | 1 | 175 | 2.69e-72 | 217 |
| Msa0462980 | AT3G55770.4 | 74.074 | 135 | 32 | 2 | 1 | 135 | 1 | 132 | 4.78e-67 | 202 |
| Msa0462980 | AT3G55770.4 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 2.93e-23 | 90.5 |
| Msa0462980 | AT3G55770.6 | 72.388 | 134 | 35 | 1 | 1 | 134 | 1 | 132 | 1.06e-64 | 196 |
| Msa0462980 | AT3G55770.6 | 50.000 | 88 | 43 | 1 | 103 | 190 | 3 | 89 | 1.77e-23 | 90.9 |
| Msa0462980 | AT2G45800.2 | 61.688 | 154 | 54 | 3 | 34 | 187 | 4 | 152 | 1.00e-60 | 187 |
| Msa0462980 | AT2G45800.2 | 56.338 | 71 | 31 | 0 | 3 | 73 | 68 | 138 | 2.76e-22 | 89.7 |
| Msa0462980 | AT1G10200.2 | 54.135 | 133 | 57 | 2 | 45 | 175 | 3 | 133 | 9.65e-46 | 148 |
| Msa0462980 | AT1G10200.2 | 52.778 | 72 | 34 | 0 | 3 | 74 | 61 | 132 | 9.92e-21 | 84.3 |
Find 68 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATACGTTATTAAATA+AGG | 0.190524 | 3_3:+62233886 | None:intergenic |
| TCACTGCAAAGGAACTTTAA+AGG | 0.270879 | 3_3:-62233361 | Msa0462980:intron |
| AGCATCTGAAACAAGCTTTA+TGG | 0.273670 | 3_3:+62233385 | None:intergenic |
| GCATAATTTGATGGAGTTAT+AGG | 0.293254 | 3_3:+62230480 | None:intergenic |
| TGAAAATTACATCATCAAAT+TGG | 0.299512 | 3_3:+62230095 | None:intergenic |
| GGCACCAACATTCAAGATTC+TGG | 0.320266 | 3_3:+62230342 | None:intergenic |
| ACTAAGGAGATGAATATAAA+TGG | 0.322282 | 3_3:+62233833 | None:intergenic |
| TTAATAACGTATTTACATAA+TGG | 0.361443 | 3_3:-62233880 | Msa0462980:five_prime_UTR |
| TTCATCTCCTTAGTCTTAAC+CGG | 0.373802 | 3_3:-62233824 | Msa0462980:five_prime_UTR |
| GTTGATCAGCTTTCTGCTGA+TGG | 0.376891 | 3_3:-62233417 | Msa0462980:CDS |
| TGTGAATTGGTAGTGATAAA+TGG | 0.378528 | 3_3:+62233755 | None:intergenic |
| CTTGAAACATGATTTGTGAT+AGG | 0.385052 | 3_3:+62230521 | None:intergenic |
| GGAATCATTACCTTGTGAAT+TGG | 0.386249 | 3_3:+62233742 | None:intergenic |
| TCAGCAGAAAGCTGATCAAC+AGG | 0.391848 | 3_3:+62233420 | None:intergenic |
| TCAAATTATGCAGCCCTTGA+GGG | 0.436930 | 3_3:-62230468 | Msa0462980:CDS |
| GAACAAAGGCAATAATTAGA+AGG | 0.437664 | 3_3:+62230321 | None:intergenic |
| TCTTGTGTGATTTATTTATC+CGG | 0.437808 | 3_3:-62230166 | Msa0462980:three_prime_UTR |
| TCAAGGGCTGCATAATTTGA+TGG | 0.451254 | 3_3:+62230471 | None:intergenic |
| TGGTGGATCGGTGAAGATAG+AGG | 0.464680 | 3_3:+62233775 | None:intergenic |
| ATGCAAGGCTTGTGAGAAAA+CGG | 0.479151 | 3_3:-62233448 | Msa0462980:CDS |
| GCTTAGCAGCTATTCATCAA+TGG | 0.481021 | 3_3:-62232159 | Msa0462980:CDS |
| TGTCTCTATATAACAGCATT+CGG | 0.488985 | 3_3:+62230060 | None:intergenic |
| AGAGTCTCCGGTTAAGACTA+AGG | 0.489264 | 3_3:+62233817 | None:intergenic |
| CAAGCAAGTGTTTGTATGTG+TGG | 0.499680 | 3_3:-62230267 | Msa0462980:three_prime_UTR |
| AACATGCCCGCAGCTTTGCT+AGG | 0.502670 | 3_3:+62231814 | None:intergenic |
| TCAAGCAAATTTACCAGCAC+AGG | 0.506130 | 3_3:+62231930 | None:intergenic |
| TGCAATACAAAATGCCCTCA+AGG | 0.513427 | 3_3:+62230454 | None:intergenic |
| ATCAAATTATGCAGCCCTTG+AGG | 0.523435 | 3_3:-62230469 | Msa0462980:CDS |
| TTAAATCTTACCTTCTCCAA+TGG | 0.527191 | 3_3:+62231745 | None:intergenic |
| TGGCAAAACTGCTTATCCAT+TGG | 0.531481 | 3_3:-62231761 | Msa0462980:CDS |
| GTAGGTAACAGTCGAAAGCC+AGG | 0.532163 | 3_3:-62230544 | Msa0462980:intron |
| ACGTTATTAAATAAGGAAAG+TGG | 0.533527 | 3_3:+62233893 | None:intergenic |
| CGTTCCAGAATCTTGAATGT+TGG | 0.533855 | 3_3:-62230346 | Msa0462980:exon |
| ACACAAAGTTCAAGAGTCTC+CGG | 0.533991 | 3_3:+62233805 | None:intergenic |
| ACATGCCCGCAGCTTTGCTA+GGG | 0.534302 | 3_3:+62231815 | None:intergenic |
| GAGCAGCTCTTCAAGGAGCA+TGG | 0.538709 | 3_3:-62232107 | Msa0462980:CDS |
| TTGAAGAGCTGCTCAAAATG+AGG | 0.540372 | 3_3:+62232116 | None:intergenic |
| TAATGATGGAACAATTATGA+AGG | 0.552601 | 3_3:+62230234 | None:intergenic |
| GATGTTTACTTATACATGTG+TGG | 0.562737 | 3_3:-62230197 | Msa0462980:three_prime_UTR |
| AGGACCCCTAGCAAAGCTGC+GGG | 0.566248 | 3_3:-62231820 | Msa0462980:CDS |
| GGTGGATCGGTGAAGATAGA+GGG | 0.571433 | 3_3:+62233776 | None:intergenic |
| TGACGGTACAACTCCTGTGC+TGG | 0.573159 | 3_3:-62231943 | Msa0462980:intron |
| TTCAGATGCTCTCACTGCAA+AGG | 0.579144 | 3_3:-62233372 | Msa0462980:CDS |
| AACTGCTTATCCATTGGAGA+AGG | 0.581461 | 3_3:-62231755 | Msa0462980:intron |
| CTTCTTTCAAAACAGAACAA+AGG | 0.583366 | 3_3:+62230307 | None:intergenic |
| GCTGTTATATAGAGACACCT+TGG | 0.591288 | 3_3:-62230054 | Msa0462980:three_prime_UTR |
| GTTATATAGAGACACCTTGG+AGG | 0.593268 | 3_3:-62230051 | Msa0462980:three_prime_UTR |
| CATTCAAGATTCTGGAACGG+AGG | 0.593798 | 3_3:+62230350 | None:intergenic |
| TCATGTTTCAAGTGTTCACA+TGG | 0.595518 | 3_3:-62230510 | Msa0462980:CDS |
| GCAATACAAAATGCCCTCAA+GGG | 0.597362 | 3_3:+62230455 | None:intergenic |
| TGTCAGTACTGAATGTTCAC+CGG | 0.600445 | 3_3:+62230147 | None:intergenic |
| AAGGACCCCTAGCAAAGCTG+CGG | 0.600940 | 3_3:-62231821 | Msa0462980:CDS |
| GGTGATAACGAGTCATGTCA+TGG | 0.615763 | 3_3:+62233854 | None:intergenic |
| AGCAGCTATTCATCAATGGA+AGG | 0.620240 | 3_3:-62232155 | Msa0462980:CDS |
| TTATTAAATAAGGAAAGTGG+AGG | 0.628760 | 3_3:+62233896 | None:intergenic |
| TATTAAATAAGGAAAGTGGA+GGG | 0.633009 | 3_3:+62233897 | None:intergenic |
| GGTAGTGATAAATGGTGGAT+CGG | 0.641567 | 3_3:+62233763 | None:intergenic |
| CAAGAAAAGTGTGCTACATG+TGG | 0.644472 | 3_3:-62231781 | Msa0462980:CDS |
| CAGCAGAAAGCTGATCAACA+GGG | 0.649506 | 3_3:+62233421 | None:intergenic |
| AACATGATTTGTGATAGGCC+TGG | 0.655676 | 3_3:+62230526 | None:intergenic |
| CAACATTCAAGATTCTGGAA+CGG | 0.669244 | 3_3:+62230347 | None:intergenic |
| GAATTGGTAGTGATAAATGG+TGG | 0.675823 | 3_3:+62233758 | None:intergenic |
| TGTTTCAAGTGTTCACATGG+TGG | 0.677869 | 3_3:-62230507 | Msa0462980:CDS |
| TTTATCACTACCAATTCACA+AGG | 0.686639 | 3_3:-62233752 | Msa0462980:intron |
| CATGCCCGCAGCTTTGCTAG+GGG | 0.687636 | 3_3:+62231816 | None:intergenic |
| ACAGCTGCAAAGGTAGCTGA+CGG | 0.690921 | 3_3:-62231960 | Msa0462980:intron |
| ACTGAATTTCAAAATGCACA+AGG | 0.735629 | 3_3:+62233526 | None:intergenic |
| GAATTTCAAAATGCACAAGG+TGG | 0.740404 | 3_3:+62233529 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGGTAAAAAAAATAAAAA+AGG | + | chr3_3:62230273-62230292 | None:intergenic | 10.0% |
| !!! | ATTTTTTATGTTTATGATAT+TGG | - | chr3_3:62230611-62230630 | Msa0462980:intron | 10.0% |
| !! | TGTAAATACGTTATTAAATA+AGG | + | chr3_3:62230007-62230026 | None:intergenic | 15.0% |
| !! | TTAATAACGTATTTACATAA+TGG | - | chr3_3:62230010-62230029 | Msa0462980:three_prime_UTR | 15.0% |
| !!! | TTTTTATTGTTCTTTTAATC+CGG | - | chr3_3:62231990-62232009 | Msa0462980:intron | 15.0% |
| !! | TTAATGGTATAAAGTTGAAA+AGG | + | chr3_3:62230201-62230220 | None:intergenic | 20.0% |
| !! | TATATTTAGACATATGAAAG+TGG | - | chr3_3:62230762-62230781 | Msa0462980:intron | 20.0% |
| !! | ATATTTAGACATATGAAAGT+GGG | - | chr3_3:62230763-62230782 | Msa0462980:intron | 20.0% |
| !! | AAACTAAACTTGAAAGATTA+TGG | + | chr3_3:62231173-62231192 | None:intergenic | 20.0% |
| !!! | AAGTTTAGTTTCTCAAATAT+TGG | - | chr3_3:62231182-62231201 | Msa0462980:intron | 20.0% |
| !!! | TAAAGTTTGAATTTTTCACA+AGG | - | chr3_3:62231681-62231700 | Msa0462980:intron | 20.0% |
| !! | AAAATTATTGCCAATTAAAG+AGG | + | chr3_3:62231903-62231922 | None:intergenic | 20.0% |
| !! | AAGGTAAGATTTAAAAATCT+TGG | - | chr3_3:62232154-62232173 | Msa0462980:CDS | 20.0% |
| !! | ACTAAAGATACTTATTCTTA+TGG | + | chr3_3:62232243-62232262 | None:intergenic | 20.0% |
| !! | ATATGACTTCATTATCTTAT+TGG | - | chr3_3:62232578-62232597 | Msa0462980:intron | 20.0% |
| !! | TATGACTTCATTATCTTATT+GGG | - | chr3_3:62232579-62232598 | Msa0462980:intron | 20.0% |
| !!! | CTTCAATTTCATGTTTTTTA+AGG | + | chr3_3:62232682-62232701 | None:intergenic | 20.0% |
| !!! | TAAATCTAATTTTTGATCAC+TGG | - | chr3_3:62232974-62232993 | Msa0462980:intron | 20.0% |
| !!! | AAATCTAATTTTTGATCACT+GGG | - | chr3_3:62232975-62232994 | Msa0462980:intron | 20.0% |
| !! | AGTAATTAGATTTACTCATT+CGG | + | chr3_3:62233239-62233258 | None:intergenic | 20.0% |
| !! | AGAAAAATGATAAGTAATGA+TGG | + | chr3_3:62233673-62233692 | None:intergenic | 20.0% |
| !! | TGAAAATTACATCATCAAAT+TGG | + | chr3_3:62233798-62233817 | None:intergenic | 20.0% |
| ! | TATTAAATAAGGAAAGTGGA+GGG | + | chr3_3:62229996-62230015 | None:intergenic | 25.0% |
| ! | TTATTAAATAAGGAAAGTGG+AGG | + | chr3_3:62229997-62230016 | None:intergenic | 25.0% |
| ! | ACGTTATTAAATAAGGAAAG+TGG | + | chr3_3:62230000-62230019 | None:intergenic | 25.0% |
| ! | ACTAAGGAGATGAATATAAA+TGG | + | chr3_3:62230060-62230079 | None:intergenic | 25.0% |
| ! | TAAAGTTGAAAAGGTGAAAT+GGG | + | chr3_3:62230192-62230211 | None:intergenic | 25.0% |
| ! | ATAAAGTTGAAAAGGTGAAA+TGG | + | chr3_3:62230193-62230212 | None:intergenic | 25.0% |
| ! | AAAATTTGAAAGCTTAGGAT+TGG | + | chr3_3:62230247-62230266 | None:intergenic | 25.0% |
| ! | GGATTAAAATTTGAAAGCTT+AGG | + | chr3_3:62230252-62230271 | None:intergenic | 25.0% |
| ! | ATAGTTTCAGTTTCAGAAAA+TGG | + | chr3_3:62230291-62230310 | None:intergenic | 25.0% |
| ! | AGATTAAAAAAAGCTCTCAT+TGG | + | chr3_3:62230715-62230734 | None:intergenic | 25.0% |
| !!! | GAGCTTTTTTTAATCTAAGT+TGG | - | chr3_3:62230719-62230738 | Msa0462980:intron | 25.0% |
| !! | ATATGAAAGTGGGAATTTTA+TGG | - | chr3_3:62230773-62230792 | Msa0462980:intron | 25.0% |
| !! | TATGAAAGTGGGAATTTTAT+GGG | - | chr3_3:62230774-62230793 | Msa0462980:intron | 25.0% |
| ! | ACGCTTTCAACAATTTAAAT+AGG | + | chr3_3:62230837-62230856 | None:intergenic | 25.0% |
| !! | TTATGAAAATGAGTTGAAAG+AGG | - | chr3_3:62231032-62231051 | Msa0462980:intron | 25.0% |
| ! | AGCTTATACATAAGTGATTA+TGG | + | chr3_3:62231063-62231082 | None:intergenic | 25.0% |
| ! | AAACTTGAAAGATTATGGAT+TGG | + | chr3_3:62231168-62231187 | None:intergenic | 25.0% |
| ! | GAGAATTTATGAAAATGAGT+TGG | - | chr3_3:62231026-62231045 | Msa0462980:intron | 25.0% |
| !! | TAAATTTTGTGAGACTGTTT+GGG | + | chr3_3:62231273-62231292 | None:intergenic | 25.0% |
| !! | ATAAATTTTGTGAGACTGTT+TGG | + | chr3_3:62231274-62231293 | None:intergenic | 25.0% |
| !! | TTGAGTTGTTTATTCAAACA+TGG | - | chr3_3:62231631-62231650 | Msa0462980:intron | 25.0% |
| ! | GGTATTACTGAATAAACTAA+TGG | - | chr3_3:62232025-62232044 | Msa0462980:intron | 25.0% |
| ! | TCAGATATATCTGTTACATA+TGG | - | chr3_3:62232202-62232221 | Msa0462980:intron | 25.0% |
| !! | CATGTTGATGTTAAATGTTT+TGG | + | chr3_3:62232333-62232352 | None:intergenic | 25.0% |
| !!! | AATGTAGGTTTTATCATCTT+TGG | + | chr3_3:62232642-62232661 | None:intergenic | 25.0% |
| !! | ATAACATAAAGCTTTTTGCT+GGG | - | chr3_3:62232798-62232817 | Msa0462980:intron | 25.0% |
| ! | CTATTAATATCTCCAATTAC+AGG | - | chr3_3:62232848-62232867 | Msa0462980:intron | 25.0% |
| !! | ATGTAACATTTTCTCATTTC+AGG | + | chr3_3:62233171-62233190 | None:intergenic | 25.0% |
| ! | GTAATTAGATTTACTCATTC+GGG | + | chr3_3:62233238-62233257 | None:intergenic | 25.0% |
| ! | ATATATCTCATTCTGAATGT+AGG | - | chr3_3:62233328-62233347 | Msa0462980:intron | 25.0% |
| !! | TAATGATGGAACAATTATGA+AGG | + | chr3_3:62233659-62233678 | None:intergenic | 25.0% |
| ! | TCTTGTGTGATTTATTTATC+CGG | - | chr3_3:62233724-62233743 | Msa0462980:intron | 25.0% |
| !! | TGTGAATTGGTAGTGATAAA+TGG | + | chr3_3:62230138-62230157 | None:intergenic | 30.0% |
| TTTATCACTACCAATTCACA+AGG | - | chr3_3:62230138-62230157 | Msa0462980:three_prime_UTR | 30.0% | |
| GGGGAAATGAAATGAATTAA+TGG | + | chr3_3:62230217-62230236 | None:intergenic | 30.0% | |
| ! | AAGCTTAGGATTGGATTTTA+GGG | + | chr3_3:62230238-62230257 | None:intergenic | 30.0% |
| ! | AAAGCTTAGGATTGGATTTT+AGG | + | chr3_3:62230239-62230258 | None:intergenic | 30.0% |
| ACTGAATTTCAAAATGCACA+AGG | + | chr3_3:62230367-62230386 | None:intergenic | 30.0% | |
| !!! | TTGTGCATTTTGAAATTCAG+TGG | - | chr3_3:62230366-62230385 | Msa0462980:CDS | 30.0% |
| ! | TTGGAATTTTACATGGATGA+TGG | + | chr3_3:62230696-62230715 | None:intergenic | 30.0% |
| ! | TTAAATTGTTGAAAGCGTGT+TGG | - | chr3_3:62230839-62230858 | Msa0462980:intron | 30.0% |
| !! | TAAGTTTTGTCAGACTGTTT+GGG | + | chr3_3:62231121-62231140 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTCAGACTGTT+TGG | + | chr3_3:62231122-62231141 | None:intergenic | 30.0% |
| GCTTAATTGAGCTTATCTAT+TGG | + | chr3_3:62231146-62231165 | None:intergenic | 30.0% | |
| AACCTAGAAAGATTATGGAT+TGG | + | chr3_3:62231320-62231339 | None:intergenic | 30.0% | |
| AAGCTAACCTAGAAAGATTA+TGG | + | chr3_3:62231325-62231344 | None:intergenic | 30.0% | |
| GAATAAACAACTCAACTAAG+TGG | + | chr3_3:62231626-62231645 | None:intergenic | 30.0% | |
| AAAAAGAAGACATACGTGAT+TGG | + | chr3_3:62231833-62231852 | None:intergenic | 30.0% | |
| ! | GTATGTCTTCTTTTTCTTCA+AGG | - | chr3_3:62231838-62231857 | Msa0462980:intron | 30.0% |
| !!! | TTTATTTTGAACAGCTGCAA+AGG | - | chr3_3:62231920-62231939 | Msa0462980:intron | 30.0% |
| TTCAGTAATACCAAATGTCA+AGG | + | chr3_3:62232017-62232036 | None:intergenic | 30.0% | |
| TTAAATCTTACCTTCTCCAA+TGG | + | chr3_3:62232148-62232167 | None:intergenic | 30.0% | |
| AATTGTTTCATGCTTGCAAT+GGG | + | chr3_3:62232408-62232427 | None:intergenic | 30.0% | |
| CTACATTATGATTCAGTTCA+CGG | - | chr3_3:62232655-62232674 | Msa0462980:intron | 30.0% | |
| !! | TTTTATGATTTTGTGGGTTG+GGG | + | chr3_3:62232745-62232764 | None:intergenic | 30.0% |
| ! | GTTTTATGATTTTGTGGGTT+GGG | + | chr3_3:62232746-62232765 | None:intergenic | 30.0% |
| !! | GTTCGGTTTTATGATTTTGT+GGG | + | chr3_3:62232751-62232770 | None:intergenic | 30.0% |
| !! | TGTTCGGTTTTATGATTTTG+TGG | + | chr3_3:62232752-62232771 | None:intergenic | 30.0% |
| ! | ACCAGCAAAGATTTCATTTT+GGG | + | chr3_3:62232776-62232795 | None:intergenic | 30.0% |
| ! | TACCAGCAAAGATTTCATTT+TGG | + | chr3_3:62232777-62232796 | None:intergenic | 30.0% |
| ! | CATAACATAAAGCTTTTTGC+TGG | - | chr3_3:62232797-62232816 | Msa0462980:intron | 30.0% |
| TCATAATCAATATGCACTTC+AGG | + | chr3_3:62232875-62232894 | None:intergenic | 30.0% | |
| ! | TAATTTTTGATCACTGGGAA+GGG | - | chr3_3:62232980-62232999 | Msa0462980:intron | 30.0% |
| ! | GGATAAGTGATAACTAGTTT+AGG | + | chr3_3:62233119-62233138 | None:intergenic | 30.0% |
| ! | TAACATTTTCTCATTTCAGG+TGG | + | chr3_3:62233168-62233187 | None:intergenic | 30.0% |
| ! | TATAAATCTGCAGTTTTGCA+CGG | - | chr3_3:62233258-62233277 | Msa0462980:intron | 30.0% |
| ! | CTTGAAACATGATTTGTGAT+AGG | + | chr3_3:62233372-62233391 | None:intergenic | 30.0% |
| GCATAATTTGATGGAGTTAT+AGG | + | chr3_3:62233413-62233432 | None:intergenic | 30.0% | |
| GAACAAAGGCAATAATTAGA+AGG | + | chr3_3:62233572-62233591 | None:intergenic | 30.0% | |
| CTTCTTTCAAAACAGAACAA+AGG | + | chr3_3:62233586-62233605 | None:intergenic | 30.0% | |
| !!! | TTGTTCTGTTTTGAAAGAAG+AGG | - | chr3_3:62233586-62233605 | Msa0462980:intron | 30.0% |
| !!! | TGTTCTGTTTTGAAAGAAGA+GGG | - | chr3_3:62233587-62233606 | Msa0462980:intron | 30.0% |
| GATGTTTACTTATACATGTG+TGG | - | chr3_3:62233693-62233712 | Msa0462980:intron | 30.0% | |
| TGTCTCTATATAACAGCATT+CGG | + | chr3_3:62233833-62233852 | None:intergenic | 30.0% | |
| !! | TTCATCTCCTTAGTCTTAAC+CGG | - | chr3_3:62230066-62230085 | Msa0462980:three_prime_UTR | 35.0% |
| !! | GAATTGGTAGTGATAAATGG+TGG | + | chr3_3:62230135-62230154 | None:intergenic | 35.0% |
| GGAATCATTACCTTGTGAAT+TGG | + | chr3_3:62230151-62230170 | None:intergenic | 35.0% | |
| GGGTATTAGAGTATATGAAC+TGG | + | chr3_3:62230172-62230191 | None:intergenic | 35.0% | |
| ! | AGCTTAGGATTGGATTTTAG+GGG | + | chr3_3:62230237-62230256 | None:intergenic | 35.0% |
| GAATTTCAAAATGCACAAGG+TGG | + | chr3_3:62230364-62230383 | None:intergenic | 35.0% | |
| ! | ACAAGCCTTGCATTTTTGTT+GGG | + | chr3_3:62230435-62230454 | None:intergenic | 35.0% |
| ! | AGCATCTGAAACAAGCTTTA+TGG | + | chr3_3:62230508-62230527 | None:intergenic | 35.0% |
| TCACTGCAAAGGAACTTTAA+AGG | - | chr3_3:62230529-62230548 | Msa0462980:CDS | 35.0% | |
| ! | GCTCTCATTGGAATTTTACA+TGG | + | chr3_3:62230703-62230722 | None:intergenic | 35.0% |
| AGCCAATCCATAATCTTTCT+AGG | - | chr3_3:62231315-62231334 | Msa0462980:intron | 35.0% | |
| ACACACATGATTGATTGTCA+TGG | + | chr3_3:62231403-62231422 | None:intergenic | 35.0% | |
| CAATCATGTGTGTGACTTTA+AGG | - | chr3_3:62231410-62231429 | Msa0462980:intron | 35.0% | |
| CAATCAGATGCCTCTTTAAT+TGG | - | chr3_3:62231890-62231909 | Msa0462980:intron | 35.0% | |
| TAATACCAAATGTCAAGGAC+CGG | + | chr3_3:62232012-62232031 | None:intergenic | 35.0% | |
| TCTTCTGTTTATTCCAGACA+AGG | - | chr3_3:62232050-62232069 | Msa0462980:intron | 35.0% | |
| TTATTACTCCCCTGTACATA+AGG | - | chr3_3:62232262-62232281 | Msa0462980:intron | 35.0% | |
| TCTAGTCTACCTTATGTACA+GGG | + | chr3_3:62232274-62232293 | None:intergenic | 35.0% | |
| TAAAATTGCGAGCACAAAGA+AGG | - | chr3_3:62232360-62232379 | Msa0462980:intron | 35.0% | |
| ATTGTTTCATGCTTGCAATG+GGG | + | chr3_3:62232407-62232426 | None:intergenic | 35.0% | |
| CAATTGTTTCATGCTTGCAA+TGG | + | chr3_3:62232409-62232428 | None:intergenic | 35.0% | |
| ATAGCAATGACAGTGTAAGA+GGG | + | chr3_3:62232497-62232516 | None:intergenic | 35.0% | |
| GTCATATCAAAGTCTACTTG+TGG | + | chr3_3:62232565-62232584 | None:intergenic | 35.0% | |
| CGTGAACTGAATCATAATGT+AGG | + | chr3_3:62232657-62232676 | None:intergenic | 35.0% | |
| !! | GGTTTTATGATTTTGTGGGT+TGG | + | chr3_3:62232747-62232766 | None:intergenic | 35.0% |
| !!! | AGATTTCATTTTGGGGTGTT+CGG | + | chr3_3:62232768-62232787 | None:intergenic | 35.0% |
| ! | CCAGCAAAGATTTCATTTTG+GGG | + | chr3_3:62232775-62232794 | None:intergenic | 35.0% |
| ! | CTAATTTTTGATCACTGGGA+AGG | - | chr3_3:62232979-62232998 | Msa0462980:intron | 35.0% |
| ! | TCTCTAGGAAAACAGTTGTT+TGG | - | chr3_3:62233047-62233066 | Msa0462980:intron | 35.0% |
| TTCGGGCAATTATTGACAAA+TGG | + | chr3_3:62233221-62233240 | None:intergenic | 35.0% | |
| ATATAGCGACAAGAAAACCA+AGG | + | chr3_3:62233302-62233321 | None:intergenic | 35.0% | |
| ! | TCATGTTTCAAGTGTTCACA+TGG | - | chr3_3:62233380-62233399 | Msa0462980:CDS | 35.0% |
| CCTTAAAAAGCTGAGAGAAA+TGG | + | chr3_3:62233466-62233485 | None:intergenic | 35.0% | |
| ! | CCATTTCTCTCAGCTTTTTA+AGG | - | chr3_3:62233463-62233482 | Msa0462980:CDS | 35.0% |
| !! | TCTCAGCTTTTTAAGGAGAA+AGG | - | chr3_3:62233470-62233489 | Msa0462980:CDS | 35.0% |
| !! | CTCAGCTTTTTAAGGAGAAA+GGG | - | chr3_3:62233471-62233490 | Msa0462980:CDS | 35.0% |
| ! | CAACATTCAAGATTCTGGAA+CGG | + | chr3_3:62233546-62233565 | None:intergenic | 35.0% |
| ACACAAAGTTCAAGAGTCTC+CGG | + | chr3_3:62230088-62230107 | None:intergenic | 40.0% | |
| !! | GGTAGTGATAAATGGTGGAT+CGG | + | chr3_3:62230130-62230149 | None:intergenic | 40.0% |
| ! | GCTTAGGATTGGATTTTAGG+GGG | + | chr3_3:62230236-62230255 | None:intergenic | 40.0% |
| ! | GCTGCAACGATGTCTTTTAT+TGG | - | chr3_3:62230407-62230426 | Msa0462980:CDS | 40.0% |
| TGGTACCCAACAAAAATGCA+AGG | - | chr3_3:62230427-62230446 | Msa0462980:CDS | 40.0% | |
| ! | CACAAGCCTTGCATTTTTGT+TGG | + | chr3_3:62230436-62230455 | None:intergenic | 40.0% |
| ATGCAAGGCTTGTGAGAAAA+CGG | - | chr3_3:62230442-62230461 | Msa0462980:CDS | 40.0% | |
| ! | TTGTTGAAAGCGTGTTGGAT+CGG | - | chr3_3:62230844-62230863 | Msa0462980:intron | 40.0% |
| TGCACTAATGAGTGACTGTA+TGG | - | chr3_3:62230891-62230910 | Msa0462980:intron | 40.0% | |
| GCTTAGCAGCTATTCATCAA+TGG | - | chr3_3:62231731-62231750 | Msa0462980:intron | 40.0% | |
| AGCAGCTATTCATCAATGGA+AGG | - | chr3_3:62231735-62231754 | Msa0462980:intron | 40.0% | |
| TTGAAGAGCTGCTCAAAATG+AGG | + | chr3_3:62231777-62231796 | None:intergenic | 40.0% | |
| ! | TCATTTTGAGCAGCTCTTCA+AGG | - | chr3_3:62231776-62231795 | Msa0462980:CDS | 40.0% |
| TCAAGCAAATTTACCAGCAC+AGG | + | chr3_3:62231963-62231982 | None:intergenic | 40.0% | |
| TTAATCCGGTCCTTGACATT+TGG | - | chr3_3:62232004-62232023 | Msa0462980:intron | 40.0% | |
| ! | CAAGAAAAGTGTGCTACATG+TGG | - | chr3_3:62232109-62232128 | Msa0462980:CDS | 40.0% |
| TGGCAAAACTGCTTATCCAT+TGG | - | chr3_3:62232129-62232148 | Msa0462980:CDS | 40.0% | |
| AACTGCTTATCCATTGGAGA+AGG | - | chr3_3:62232135-62232154 | Msa0462980:CDS | 40.0% | |
| CTAGTCTACCTTATGTACAG+GGG | + | chr3_3:62232273-62232292 | None:intergenic | 40.0% | |
| CTCTAGTCTACCTTATGTAC+AGG | + | chr3_3:62232275-62232294 | None:intergenic | 40.0% | |
| GGCAAAGTTGTACTTCATAC+AGG | + | chr3_3:62232386-62232405 | None:intergenic | 40.0% | |
| ! | TTAGTGCGACCTTTTGCTTT+TGG | - | chr3_3:62232430-62232449 | Msa0462980:intron | 40.0% |
| !! | TAGTGCGACCTTTTGCTTTT+GGG | - | chr3_3:62232431-62232450 | Msa0462980:intron | 40.0% |
| CATAGCAATGACAGTGTAAG+AGG | + | chr3_3:62232498-62232517 | None:intergenic | 40.0% | |
| CCCCAAAATGAAATCTTTGC+TGG | - | chr3_3:62232772-62232791 | Msa0462980:intron | 40.0% | |
| ! | CATAAAGCTTTTTGCTGGGT+TGG | - | chr3_3:62232802-62232821 | Msa0462980:intron | 40.0% |
| !! | TTTGCTGGGTTGGTTTAAAC+TGG | - | chr3_3:62232812-62232831 | Msa0462980:intron | 40.0% |
| ! | GTTTGGTTCAAGTTAGCGAA+AGG | - | chr3_3:62233064-62233083 | Msa0462980:intron | 40.0% |
| ! | ACGCAGCAGATTCTACATTT+TGG | + | chr3_3:62233198-62233217 | None:intergenic | 40.0% |
| !! | AACCAAGGCATTCTAGTTCA+GGG | + | chr3_3:62233287-62233306 | None:intergenic | 40.0% |
| !! | AAACCAAGGCATTCTAGTTC+AGG | + | chr3_3:62233288-62233307 | None:intergenic | 40.0% |
| ! | AACATGATTTGTGATAGGCC+TGG | + | chr3_3:62233367-62233386 | None:intergenic | 40.0% |
| ! | TGTTTCAAGTGTTCACATGG+TGG | - | chr3_3:62233383-62233402 | Msa0462980:CDS | 40.0% |
| TCAAGGGCTGCATAATTTGA+TGG | + | chr3_3:62233422-62233441 | None:intergenic | 40.0% | |
| ATCAAATTATGCAGCCCTTG+AGG | - | chr3_3:62233421-62233440 | Msa0462980:CDS | 40.0% | |
| TCAAATTATGCAGCCCTTGA+GGG | - | chr3_3:62233422-62233441 | Msa0462980:CDS | 40.0% | |
| GCAATACAAAATGCCCTCAA+GGG | + | chr3_3:62233438-62233457 | None:intergenic | 40.0% | |
| TGCAATACAAAATGCCCTCA+AGG | + | chr3_3:62233439-62233458 | None:intergenic | 40.0% | |
| CGTTCCAGAATCTTGAATGT+TGG | - | chr3_3:62233544-62233563 | Msa0462980:five_prime_UTR | 40.0% | |
| CAAGCAAGTGTTTGTATGTG+TGG | - | chr3_3:62233623-62233642 | Msa0462980:intron | 40.0% | |
| ! | TGTCAGTACTGAATGTTCAC+CGG | + | chr3_3:62233746-62233765 | None:intergenic | 40.0% |
| GCTGTTATATAGAGACACCT+TGG | - | chr3_3:62233836-62233855 | Msa0462980:five_prime_UTR | 40.0% | |
| GTTATATAGAGACACCTTGG+AGG | - | chr3_3:62233839-62233858 | Msa0462980:five_prime_UTR | 40.0% | |
| !!! | GTCTCTTTTTTTTGCCTCCA+AGG | + | chr3_3:62233856-62233875 | None:intergenic | 40.0% |
| ! | GGTGATAACGAGTCATGTCA+TGG | + | chr3_3:62230039-62230058 | None:intergenic | 45.0% |
| AGAGTCTCCGGTTAAGACTA+AGG | + | chr3_3:62230076-62230095 | None:intergenic | 45.0% | |
| CAGCAGAAAGCTGATCAACA+GGG | + | chr3_3:62230472-62230491 | None:intergenic | 45.0% | |
| TCAGCAGAAAGCTGATCAAC+AGG | + | chr3_3:62230473-62230492 | None:intergenic | 45.0% | |
| GTTGATCAGCTTTCTGCTGA+TGG | - | chr3_3:62230473-62230492 | Msa0462980:CDS | 45.0% | |
| TTCAGATGCTCTCACTGCAA+AGG | - | chr3_3:62230518-62230537 | Msa0462980:CDS | 45.0% | |
| TGCAGCGTCAATCATAAGCA+AGG | + | chr3_3:62230669-62230688 | None:intergenic | 45.0% | |
| ! | ACTAGAGTATCCTCCTTCTC+TGG | - | chr3_3:62232288-62232307 | Msa0462980:intron | 45.0% |
| ACATACCATACAGCCAGAGA+AGG | + | chr3_3:62232304-62232323 | None:intergenic | 45.0% | |
| !! | AGTGCGACCTTTTGCTTTTG+GGG | - | chr3_3:62232432-62232451 | Msa0462980:intron | 45.0% |
| TGCACTTCAGGTCCTGTAAT+TGG | + | chr3_3:62232863-62232882 | None:intergenic | 45.0% | |
| CTCTCCAGCCAAATTTGAAC+CGG | - | chr3_3:62233017-62233036 | Msa0462980:intron | 45.0% | |
| TCTCCAGCCAAATTTGAACC+GGG | - | chr3_3:62233018-62233037 | Msa0462980:intron | 45.0% | |
| AACTAGCCCCGGTTCAAATT+TGG | + | chr3_3:62233028-62233047 | None:intergenic | 45.0% | |
| ! | TTTTCCTAGAGAACTAGCCC+CGG | + | chr3_3:62233039-62233058 | None:intergenic | 45.0% |
| TACCCTGAACTAGAATGCCT+TGG | - | chr3_3:62233282-62233301 | Msa0462980:intron | 45.0% | |
| !! | CATTCAAGATTCTGGAACGG+AGG | + | chr3_3:62233543-62233562 | None:intergenic | 45.0% |
| GGCACCAACATTCAAGATTC+TGG | + | chr3_3:62233551-62233570 | None:intergenic | 45.0% | |
| !! | ATAAATTAGTTAATAATATT+TGG | - | chr3_3:62232179-62232198 | Msa0462980:intron | 5.0% |
| GGTGGATCGGTGAAGATAGA+GGG | + | chr3_3:62230117-62230136 | None:intergenic | 50.0% | |
| ! | TGGTGGATCGGTGAAGATAG+AGG | + | chr3_3:62230118-62230137 | None:intergenic | 50.0% |
| ACAGCTGCAAAGGTAGCTGA+CGG | - | chr3_3:62231930-62231949 | Msa0462980:intron | 50.0% | |
| ! | AAAGCTGCGGGCATGTTTTC+TGG | - | chr3_3:62232082-62232101 | Msa0462980:CDS | 50.0% |
| ! | AAGCTGCGGGCATGTTTTCT+GGG | - | chr3_3:62232083-62232102 | Msa0462980:CDS | 50.0% |
| ATCCTCCTTCTCTGGCTGTA+TGG | - | chr3_3:62232296-62232315 | Msa0462980:intron | 50.0% | |
| TACCATACAGCCAGAGAAGG+AGG | + | chr3_3:62232301-62232320 | None:intergenic | 50.0% | |
| !! | GTGCGACCTTTTGCTTTTGG+GGG | - | chr3_3:62232433-62232452 | Msa0462980:intron | 50.0% |
| TGAACGCCCCCAAAAGCAAA+AGG | + | chr3_3:62232442-62232461 | None:intergenic | 50.0% | |
| !!! | TTGCTTTTGGGGGCGTTCAT+TGG | - | chr3_3:62232443-62232462 | Msa0462980:intron | 50.0% |
| CTCCAGCCAAATTTGAACCG+GGG | - | chr3_3:62233019-62233038 | Msa0462980:intron | 50.0% | |
| CCTCTTATTGGAGTGCAGAC+TGG | + | chr3_3:62233140-62233159 | None:intergenic | 50.0% | |
| CCAGTCTGCACTCCAATAAG+AGG | - | chr3_3:62233137-62233156 | Msa0462980:intron | 50.0% | |
| CAGGTGGTCTAGCCTCTTAT+TGG | + | chr3_3:62233152-62233171 | None:intergenic | 50.0% | |
| GTAGGTAACAGTCGAAAGCC+AGG | - | chr3_3:62233346-62233365 | Msa0462980:intron | 50.0% | |
| GAGCAGCTCTTCAAGGAGCA+TGG | - | chr3_3:62231783-62231802 | Msa0462980:CDS | 55.0% | |
| TGACGGTACAACTCCTGTGC+TGG | - | chr3_3:62231947-62231966 | Msa0462980:CDS | 55.0% | |
| CTTTGCTAGGGGTCCTTGTC+TGG | + | chr3_3:62232066-62232085 | None:intergenic | 55.0% | |
| AAGGACCCCTAGCAAAGCTG+CGG | - | chr3_3:62232069-62232088 | Msa0462980:intron | 55.0% | |
| ACATGCCCGCAGCTTTGCTA+GGG | + | chr3_3:62232078-62232097 | None:intergenic | 55.0% | |
| AACATGCCCGCAGCTTTGCT+AGG | + | chr3_3:62232079-62232098 | None:intergenic | 55.0% | |
| AGCCCCGGTTCAAATTTGGC+TGG | + | chr3_3:62233024-62233043 | None:intergenic | 55.0% | |
| !! | TGAACCGGGGCTAGTTCTCT+AGG | - | chr3_3:62233032-62233051 | Msa0462980:intron | 55.0% |
| AGGACCCCTAGCAAAGCTGC+GGG | - | chr3_3:62232070-62232089 | Msa0462980:intron | 60.0% | |
| CATGCCCGCAGCTTTGCTAG+GGG | + | chr3_3:62232077-62232096 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62229986 | 62233926 | 62229986 | ID=Msa0462980;Name=Msa0462980 |
| chr3_3 | mRNA | 62229986 | 62233926 | 62229986 | ID=Msa0462980-mRNA-1;Parent=Msa0462980;Name=Msa0462980-mRNA-1;_AED=0.12;_eAED=0.12;_QI=259|1|1|1|0.8|0.66|6|367|191 |
| chr3_3 | exon | 62229986 | 62230562 | 62229986 | ID=Msa0462980-mRNA-1:exon:13289;Parent=Msa0462980-mRNA-1 |
| chr3_3 | exon | 62231756 | 62231845 | 62231756 | ID=Msa0462980-mRNA-1:exon:13288;Parent=Msa0462980-mRNA-1 |
| chr3_3 | exon | 62231944 | 62231978 | 62231944 | ID=Msa0462980-mRNA-1:exon:13287;Parent=Msa0462980-mRNA-1 |
| chr3_3 | exon | 62232075 | 62232180 | 62232075 | ID=Msa0462980-mRNA-1:exon:13286;Parent=Msa0462980-mRNA-1 |
| chr3_3 | exon | 62233362 | 62233581 | 62233362 | ID=Msa0462980-mRNA-1:exon:13285;Parent=Msa0462980-mRNA-1 |
| chr3_3 | exon | 62233753 | 62233926 | 62233753 | ID=Msa0462980-mRNA-1:exon:13284;Parent=Msa0462980-mRNA-1 |
| chr3_3 | five_prime_UTR | 62233753 | 62233926 | 62233753 | ID=Msa0462980-mRNA-1:five_prime_utr;Parent=Msa0462980-mRNA-1 |
| chr3_3 | five_prime_UTR | 62233497 | 62233581 | 62233497 | ID=Msa0462980-mRNA-1:five_prime_utr;Parent=Msa0462980-mRNA-1 |
| chr3_3 | CDS | 62233362 | 62233496 | 62233362 | ID=Msa0462980-mRNA-1:cds;Parent=Msa0462980-mRNA-1 |
| chr3_3 | CDS | 62232075 | 62232180 | 62232075 | ID=Msa0462980-mRNA-1:cds;Parent=Msa0462980-mRNA-1 |
| chr3_3 | CDS | 62231944 | 62231978 | 62231944 | ID=Msa0462980-mRNA-1:cds;Parent=Msa0462980-mRNA-1 |
| chr3_3 | CDS | 62231756 | 62231845 | 62231756 | ID=Msa0462980-mRNA-1:cds;Parent=Msa0462980-mRNA-1 |
| chr3_3 | CDS | 62230353 | 62230562 | 62230353 | ID=Msa0462980-mRNA-1:cds;Parent=Msa0462980-mRNA-1 |
| chr3_3 | three_prime_UTR | 62229986 | 62230352 | 62229986 | ID=Msa0462980-mRNA-1:three_prime_utr;Parent=Msa0462980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
