Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026730 | XP_013470073.1 | 99.342 | 304 | 2 | 0 | 3 | 306 | 2 | 305 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026730 | sp|O49485|SERA1_ARATH | 81.164 | 292 | 51 | 2 | 19 | 306 | 20 | 311 | 2.16e-165 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026730 | A0A072VR00 | 99.342 | 304 | 2 | 0 | 3 | 306 | 2 | 305 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006050 | Msa1026730 | -0.806900 | 6.569876e-50 | -8.615850e-47 |
| Msa0012820 | Msa1026730 | 0.805697 | 1.177722e-49 | -8.615850e-47 |
| Msa0016440 | Msa1026730 | 0.879239 | 1.465039e-69 | -8.615850e-47 |
| Msa0028280 | Msa1026730 | -0.804875 | 1.750882e-49 | -8.615850e-47 |
| Msa0036580 | Msa1026730 | 0.801889 | 7.277465e-49 | -8.615850e-47 |
| Msa0051100 | Msa1026730 | -0.803584 | 3.251303e-49 | -8.615850e-47 |
| Msa0054760 | Msa1026730 | -0.838290 | 3.140716e-57 | -8.615850e-47 |
| Msa0061590 | Msa1026730 | 0.807074 | 6.037289e-50 | -8.615850e-47 |
| Msa0061600 | Msa1026730 | 0.818663 | 1.742516e-52 | -8.615850e-47 |
| Msa0089080 | Msa1026730 | 0.823239 | 1.541612e-53 | -8.615850e-47 |
| Msa0106130 | Msa1026730 | 0.815122 | 1.086847e-51 | -8.615850e-47 |
| Msa0684600 | Msa1026730 | 0.805946 | 1.044147e-49 | -8.615850e-47 |
| Msa0705050 | Msa1026730 | -0.825555 | 4.397389e-54 | -8.615850e-47 |
| Msa0705130 | Msa1026730 | -0.800818 | 1.205598e-48 | -8.615850e-47 |
| Msa0716600 | Msa1026730 | 0.809486 | 1.848054e-50 | -8.615850e-47 |
| Msa0733670 | Msa1026730 | 0.850562 | 1.567534e-60 | -8.615850e-47 |
| Msa0736500 | Msa1026730 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa0756440 | Msa1026730 | -0.800641 | 1.310505e-48 | -8.615850e-47 |
| Msa0757990 | Msa1026730 | 0.807254 | 5.529697e-50 | -8.615850e-47 |
| Msa0774810 | Msa1026730 | 0.844492 | 7.309829e-59 | -8.615850e-47 |
| Msa0835550 | Msa1026730 | -0.806481 | 8.057167e-50 | -8.615850e-47 |
| Msa0132920 | Msa1026730 | -0.806777 | 6.977495e-50 | -8.615850e-47 |
| Msa0135890 | Msa1026730 | 0.832080 | 1.158959e-55 | -8.615850e-47 |
| Msa0176620 | Msa1026730 | 0.807644 | 4.569625e-50 | -8.615850e-47 |
| Msa0369780 | Msa1026730 | -0.813730 | 2.207944e-51 | -8.615850e-47 |
| Msa0417150 | Msa1026730 | -0.822637 | 2.129485e-53 | -8.615850e-47 |
| Msa0463990 | Msa1026730 | -0.806244 | 9.038387e-50 | -8.615850e-47 |
| Msa0985700 | Msa1026730 | 0.800686 | 1.283036e-48 | -8.615850e-47 |
| Msa1026710 | Msa1026730 | 0.863589 | 2.234155e-64 | -8.615850e-47 |
| Msa1026730 | Msa1040730 | 0.822658 | 2.105203e-53 | -8.615850e-47 |
| Msa1026730 | Msa1076830 | 0.804723 | 1.883425e-49 | -8.615850e-47 |
| Msa1026730 | Msa1109890 | 0.806574 | 7.700569e-50 | -8.615850e-47 |
| Msa1026730 | Msa1142860 | 0.806408 | 8.345869e-50 | -8.615850e-47 |
| Msa1026730 | Msa1178570 | 0.816116 | 6.528910e-52 | -8.615850e-47 |
| Msa1026730 | Msa1216120 | 0.805930 | 1.052485e-49 | -8.615850e-47 |
| Msa1026730 | Msa1222030 | 0.806209 | 9.194291e-50 | -8.615850e-47 |
| Msa1026730 | Msa1237260 | -0.803220 | 3.868518e-49 | -8.615850e-47 |
| Msa1026730 | Msa1320530 | 0.804687 | 1.916491e-49 | -8.615850e-47 |
| Msa1026730 | Msa1336100 | 0.807848 | 4.135467e-50 | -8.615850e-47 |
| Msa1026730 | Msa1347610 | 0.868845 | 4.822260e-66 | -8.615850e-47 |
| Msa1026730 | Msa1360380 | -0.803988 | 2.680547e-49 | -8.615850e-47 |
| Msa1026730 | Msa1363690 | 0.816428 | 5.558985e-52 | -8.615850e-47 |
| Msa1026730 | Msa1370930 | 0.837148 | 6.165086e-57 | -8.615850e-47 |
| Msa1026730 | Msa1376070 | 0.817818 | 2.706543e-52 | -8.615850e-47 |
| Msa1026730 | Msa1378400 | 0.806638 | 7.465352e-50 | -8.615850e-47 |
| Msa1026730 | Msa1393440 | 0.807980 | 3.878094e-50 | -8.615850e-47 |
| Msa1026730 | Msa1395690 | 0.809694 | 1.667529e-50 | -8.615850e-47 |
| Msa1026730 | Msa1396550 | 0.833268 | 5.879426e-56 | -8.615850e-47 |
| Msa1026730 | Msa1417950 | 0.802982 | 4.331516e-49 | -8.615850e-47 |
| Msa1026730 | Msa1426420 | 0.807656 | 4.544746e-50 | -8.615850e-47 |
| Msa1026730 | Msa1451660 | 0.802000 | 6.905695e-49 | -8.615850e-47 |
| Msa0256430 | Msa1026730 | -0.802609 | 5.172481e-49 | -8.615850e-47 |
| Msa0264020 | Msa1026730 | -0.801712 | 7.909641e-49 | -8.615850e-47 |
| Msa0500490 | Msa1026730 | -0.807302 | 5.402059e-50 | -8.615850e-47 |
| Msa0509540 | Msa1026730 | -0.813078 | 3.070994e-51 | -8.615850e-47 |
| Msa0521940 | Msa1026730 | 0.803889 | 2.810611e-49 | -8.615850e-47 |
| Msa0850630 | Msa1026730 | 0.800642 | 1.309730e-48 | -8.615850e-47 |
| Msa0902340 | Msa1026730 | 0.805818 | 1.110820e-49 | -8.615850e-47 |
| Msa0910830 | Msa1026730 | 0.806793 | 6.920913e-50 | -8.615850e-47 |
| Msa0960090 | Msa1026730 | 0.801403 | 9.155407e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026730 | MtrunA17_Chr1g0208141 | 99.342 | 304 | 2 | 0 | 3 | 306 | 2 | 305 | 0.0 | 608 |
| Msa1026730 | MtrunA17_Chr4g0000511 | 81.818 | 253 | 46 | 0 | 54 | 306 | 86 | 338 | 7.83e-152 | 439 |
| Msa1026730 | MtrunA17_Chr3g0077771 | 34.000 | 200 | 114 | 5 | 119 | 302 | 117 | 314 | 1.10e-24 | 102 |
| Msa1026730 | MtrunA17_Chr1g0210971 | 34.513 | 226 | 123 | 6 | 97 | 299 | 63 | 286 | 3.23e-21 | 92.8 |
| Msa1026730 | MtrunA17_Chr4g0004721 | 27.568 | 185 | 130 | 2 | 119 | 302 | 68 | 249 | 4.81e-21 | 91.3 |
| Msa1026730 | MtrunA17_Chr4g0004711 | 28.342 | 187 | 124 | 3 | 120 | 302 | 68 | 248 | 9.83e-21 | 90.5 |
| Msa1026730 | MtrunA17_Chr4g0004681 | 25.543 | 184 | 132 | 2 | 119 | 302 | 67 | 245 | 3.62e-18 | 83.2 |
| Msa1026730 | MtrunA17_Chr6g0450811 | 32.124 | 193 | 121 | 4 | 120 | 305 | 122 | 311 | 1.26e-17 | 82.4 |
| Msa1026730 | MtrunA17_Chr4g0004741 | 30.108 | 186 | 124 | 4 | 119 | 302 | 67 | 248 | 2.00e-14 | 72.4 |
| Msa1026730 | MtrunA17_Chr2g0331641 | 29.947 | 187 | 118 | 5 | 119 | 299 | 67 | 246 | 5.43e-14 | 71.2 |
| Msa1026730 | MtrunA17_Chr8g0351121 | 26.214 | 206 | 140 | 5 | 99 | 299 | 93 | 291 | 4.73e-13 | 68.9 |
| Msa1026730 | MtrunA17_Chr8g0351141 | 26.344 | 186 | 125 | 4 | 120 | 299 | 79 | 258 | 2.04e-12 | 66.6 |
| Msa1026730 | MtrunA17_Chr8g0351111 | 27.368 | 190 | 130 | 3 | 120 | 305 | 76 | 261 | 2.80e-12 | 66.2 |
| Msa1026730 | MtrunA17_Chr6g0450821 | 29.167 | 192 | 109 | 5 | 120 | 305 | 92 | 262 | 3.53e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026730 | AT4G34200.1 | 81.164 | 292 | 51 | 2 | 19 | 306 | 20 | 311 | 2.20e-166 | 476 |
| Msa1026730 | AT3G19480.1 | 81.752 | 274 | 48 | 1 | 35 | 306 | 23 | 296 | 7.55e-155 | 446 |
| Msa1026730 | AT1G17745.1 | 84.064 | 251 | 40 | 0 | 56 | 306 | 82 | 332 | 1.00e-152 | 441 |
| Msa1026730 | AT1G17745.2 | 75.180 | 278 | 42 | 2 | 56 | 306 | 82 | 359 | 6.69e-144 | 420 |
| Msa1026730 | AT1G72190.1 | 30.508 | 236 | 148 | 5 | 76 | 302 | 77 | 305 | 6.28e-25 | 103 |
| Msa1026730 | AT5G14780.2 | 33.152 | 184 | 119 | 3 | 126 | 305 | 112 | 295 | 8.52e-22 | 94.7 |
| Msa1026730 | AT5G14780.3 | 33.152 | 184 | 119 | 3 | 126 | 305 | 100 | 283 | 1.16e-21 | 94.0 |
| Msa1026730 | AT5G14780.1 | 33.152 | 184 | 119 | 3 | 126 | 305 | 126 | 309 | 1.24e-21 | 94.4 |
| Msa1026730 | AT1G68010.3 | 33.628 | 226 | 125 | 6 | 97 | 299 | 63 | 286 | 3.10e-19 | 87.4 |
| Msa1026730 | AT1G68010.1 | 33.628 | 226 | 125 | 6 | 97 | 299 | 63 | 286 | 3.31e-19 | 87.4 |
| Msa1026730 | AT1G12550.1 | 27.273 | 187 | 131 | 2 | 120 | 304 | 75 | 258 | 1.33e-18 | 85.1 |
| Msa1026730 | AT1G79870.1 | 27.027 | 185 | 129 | 4 | 120 | 302 | 68 | 248 | 5.27e-18 | 83.2 |
| Msa1026730 | AT1G68010.2 | 33.921 | 227 | 124 | 7 | 97 | 299 | 63 | 287 | 1.27e-17 | 82.8 |
| Msa1026730 | AT2G45630.2 | 28.495 | 186 | 127 | 4 | 120 | 302 | 91 | 273 | 6.36e-16 | 77.4 |
| Msa1026730 | AT1G79870.2 | 25.543 | 184 | 114 | 4 | 120 | 302 | 68 | 229 | 1.95e-12 | 67.0 |
Find 99 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCATTGAGCATCTTAT+TGG | 0.186509 | 7_1:+58899698 | None:intergenic |
| GGCGGAGGAGAGAGGGAGTT+TGG | 0.212385 | 7_1:+58900972 | None:intergenic |
| CTTGTTAGAGCATTGGATTC+TGG | 0.237598 | 7_1:-58899603 | Msa1026730:CDS |
| GTGAAGGGAGACGGAGGGTT+TGG | 0.252825 | 7_1:+58901016 | None:intergenic |
| ACACTTGCTGTAATGGGATT+TGG | 0.255805 | 7_1:-58899897 | Msa1026730:CDS |
| TGAAGGGAGACGGAGGGTTT+GGG | 0.332772 | 7_1:+58901017 | None:intergenic |
| CGTGAAGTGTTTGAATCTTC+CGG | 0.339399 | 7_1:-58900715 | Msa1026730:CDS |
| CACTTGCTGTAATGGGATTT+GGG | 0.344965 | 7_1:-58899896 | Msa1026730:CDS |
| GGAGTTTGGAGGAGAGAGAA+AGG | 0.350829 | 7_1:+58900986 | None:intergenic |
| GCTGATCGTGCTCATGCTAT+TGG | 0.358730 | 7_1:-58899798 | Msa1026730:CDS |
| TCTAACTCCTTTCTTCATCT+TGG | 0.371423 | 7_1:+58899668 | None:intergenic |
| GGGAAGACACTTGCTGTAAT+GGG | 0.381131 | 7_1:-58899903 | Msa1026730:CDS |
| ACATGGTCAATACAGGGAAA+TGG | 0.390332 | 7_1:-58899959 | Msa1026730:intron |
| GAAGACGACGAGGGAACGGC+GGG | 0.395159 | 7_1:+58900921 | None:intergenic |
| AGCATCACAGAGAGAGATCT+TGG | 0.396721 | 7_1:+58900768 | None:intergenic |
| ATCTTGGTGCAAAGCTCCTC+AGG | 0.418039 | 7_1:+58900784 | None:intergenic |
| ACGGAGGGAGACGGAGAAGG+CGG | 0.423781 | 7_1:+58900954 | None:intergenic |
| TGGGAAGACACTTGCTGTAA+TGG | 0.425768 | 7_1:-58899904 | Msa1026730:CDS |
| TATGTTGGAGTTTCCCTAGT+TGG | 0.429161 | 7_1:-58899924 | Msa1026730:CDS |
| CAGCAAGTGTCTTCCCAACT+AGG | 0.432947 | 7_1:+58899910 | None:intergenic |
| GGGAAGATGGTGAAGGGAGA+CGG | 0.433199 | 7_1:+58901007 | None:intergenic |
| GAGGGAGACGGAGAAGGCGG+AGG | 0.434071 | 7_1:+58900957 | None:intergenic |
| CACGGGATCGCGCTCTTAGC+TGG | 0.436535 | 7_1:-58900568 | Msa1026730:CDS |
| CTCAAGGTTGTTGGTAGAGC+TGG | 0.437574 | 7_1:-58900685 | Msa1026730:CDS |
| CGCTACCGAACATGGTTGCT+TGG | 0.440707 | 7_1:-58900632 | Msa1026730:CDS |
| CATGGTCAATACAGGGAAAT+GGG | 0.442636 | 7_1:-58899958 | Msa1026730:intron |
| GAGGAGAGAGAAAGGGAAGA+TGG | 0.443990 | 7_1:+58900994 | None:intergenic |
| AAACACTTCACGTGAGACTT+TGG | 0.446385 | 7_1:+58900726 | None:intergenic |
| GGAAGTAGCGTTAGCGGCGG+CGG | 0.448739 | 7_1:+58901038 | None:intergenic |
| ATGTTGGAGTTTCCCTAGTT+GGG | 0.453564 | 7_1:-58899923 | Msa1026730:CDS |
| GCTGAAAAGCTCGGCGAAGC+TGG | 0.458612 | 7_1:-58900859 | Msa1026730:CDS |
| GCACGATCAGCAGGAGCATA+AGG | 0.471790 | 7_1:+58899810 | None:intergenic |
| AACAACCAAGCAACCATGTT+CGG | 0.472937 | 7_1:+58900627 | None:intergenic |
| GTAATGGGATTTGGGAAGGT+TGG | 0.474064 | 7_1:-58899888 | Msa1026730:CDS |
| GGATGCACTTGTTAGAGCAT+TGG | 0.476077 | 7_1:-58899610 | Msa1026730:CDS |
| GGATTCTGGAATTGTAGCTC+AGG | 0.477094 | 7_1:-58899589 | None:intergenic |
| GGAGGAGAGAGGGAGTTTGG+AGG | 0.479184 | 7_1:+58900975 | None:intergenic |
| TTGAGCATCTTATTGGTAGC+AGG | 0.483290 | 7_1:+58899705 | None:intergenic |
| TGCTAAGGGGCTTGGTATGA+AGG | 0.488921 | 7_1:-58899847 | Msa1026730:CDS |
| TGGGAGAGAAGTAAGTATGT+TGG | 0.490032 | 7_1:-58899939 | Msa1026730:CDS |
| GCTAGGCGTGCTAAGGGGCT+TGG | 0.491466 | 7_1:-58899855 | Msa1026730:CDS |
| GGGTTTAGCGTCGAGGGAAG+AGG | 0.493537 | 7_1:+58900894 | None:intergenic |
| TTATTGGTAGCAGGCGTAAG+AGG | 0.493736 | 7_1:+58899714 | None:intergenic |
| CGAAGACGACGAGGGAACGG+CGG | 0.494219 | 7_1:+58900920 | None:intergenic |
| CGGAGAAGGCGGAGGAGAGA+GGG | 0.496667 | 7_1:+58900965 | None:intergenic |
| ATTTGGGAAGGTTGGAACTG+AGG | 0.497988 | 7_1:-58899880 | Msa1026730:CDS |
| AGACGAAGACGACGAGGGAA+CGG | 0.498132 | 7_1:+58900917 | None:intergenic |
| GGTTTGGGAAGTAGCGTTAG+CGG | 0.502137 | 7_1:+58901032 | None:intergenic |
| AAGATGGTGAAGGGAGACGG+AGG | 0.504509 | 7_1:+58901010 | None:intergenic |
| CATGGCTAGAAATGTTGCTC+AGG | 0.505750 | 7_1:-58900545 | Msa1026730:CDS |
| TGAGGTTGCTAGGCGTGCTA+AGG | 0.507332 | 7_1:-58899862 | Msa1026730:CDS |
| GGTGGAAGACTCAAGGTTGT+TGG | 0.507539 | 7_1:-58900694 | Msa1026730:CDS |
| GAGTTTGGAGGAGAGAGAAA+GGG | 0.509782 | 7_1:+58900987 | None:intergenic |
| TGGTATTGATAACGTGGATC+TGG | 0.510283 | 7_1:-58900659 | Msa1026730:CDS |
| AGAGAAAGGGAAGATGGTGA+AGG | 0.510419 | 7_1:+58901000 | None:intergenic |
| CTGGCCGCCGCTACCGAACA+TGG | 0.510644 | 7_1:-58900640 | Msa1026730:CDS |
| ACGGAGAAGGCGGAGGAGAG+AGG | 0.514088 | 7_1:+58900964 | None:intergenic |
| GGGACGGAGGGAGACGGAGA+AGG | 0.516055 | 7_1:+58900951 | None:intergenic |
| AGCGGCGGCAACAGTGTTAG+CGG | 0.522757 | 7_1:+58900594 | None:intergenic |
| GAGGTTGCTAGGCGTGCTAA+GGG | 0.523235 | 7_1:-58899861 | Msa1026730:CDS |
| GAGAAAGGGAAGATGGTGAA+GGG | 0.525178 | 7_1:+58901001 | None:intergenic |
| AGACGACGAGGGAACGGCGG+GGG | 0.527589 | 7_1:+58900923 | None:intergenic |
| CTCCTCAGGAGTGAGATTGT+AGG | 0.528475 | 7_1:+58900798 | None:intergenic |
| CGCGATCCCGTGTTCAGCGG+CGG | 0.534842 | 7_1:+58900579 | None:intergenic |
| ATAGCATGAGCACGATCAGC+AGG | 0.535627 | 7_1:+58899801 | None:intergenic |
| CTGTTGCCGCCGCTGAACAC+GGG | 0.536140 | 7_1:-58900585 | Msa1026730:CDS |
| GTTGTGGGGACGGAGGGAGA+CGG | 0.538697 | 7_1:+58900945 | None:intergenic |
| AGGTTGGAACTGAGGTTGCT+AGG | 0.547137 | 7_1:-58899872 | Msa1026730:CDS |
| CAAGCAACCATGTTCGGTAG+CGG | 0.550793 | 7_1:+58900633 | None:intergenic |
| GCTGATGCTTCTATCAAAGC+TGG | 0.551395 | 7_1:-58900523 | Msa1026730:intron |
| ACTGTTGCCGCCGCTGAACA+CGG | 0.551728 | 7_1:-58900586 | Msa1026730:CDS |
| TGCTGTAATGGGATTTGGGA+AGG | 0.561363 | 7_1:-58899892 | Msa1026730:CDS |
| GACGGTGGGTTTAGCGTCGA+GGG | 0.568041 | 7_1:+58900888 | None:intergenic |
| ATCTTCCGGTGGAAGACTCA+AGG | 0.576123 | 7_1:-58900701 | Msa1026730:CDS |
| AGCAAGTGTCTTCCCAACTA+GGG | 0.578467 | 7_1:+58899911 | None:intergenic |
| GCGGCAACAGTGTTAGCGGT+GGG | 0.581834 | 7_1:+58900598 | None:intergenic |
| AGATGGTGAAGGGAGACGGA+GGG | 0.591266 | 7_1:+58901011 | None:intergenic |
| AAGAGGAGACGAAGACGACG+AGG | 0.601153 | 7_1:+58900911 | None:intergenic |
| GAGCGCGATCCCGTGTTCAG+CGG | 0.601676 | 7_1:+58900576 | None:intergenic |
| GATCGCGCTCTTAGCTGGCA+TGG | 0.602254 | 7_1:-58900563 | Msa1026730:CDS |
| GTTGTTGGTAGAGCTGGTGT+TGG | 0.603479 | 7_1:-58900679 | Msa1026730:CDS |
| ATTGTTAATGTTGCTCGTGG+TGG | 0.608712 | 7_1:-58899645 | Msa1026730:CDS |
| GGCGGCAACAGTGTTAGCGG+TGG | 0.609033 | 7_1:+58900597 | None:intergenic |
| GCAACCATGTTCGGTAGCGG+CGG | 0.611449 | 7_1:+58900636 | None:intergenic |
| GGACGGTGGGTTTAGCGTCG+AGG | 0.613960 | 7_1:+58900887 | None:intergenic |
| AACAACCTTGAGTCTTCCAC+CGG | 0.614270 | 7_1:+58900696 | None:intergenic |
| GTCCTCGTCGCTGAAAAGCT+CGG | 0.619802 | 7_1:-58900868 | Msa1026730:CDS |
| TTGGGAAGTAGCGTTAGCGG+CGG | 0.621158 | 7_1:+58901035 | None:intergenic |
| AGGTTGCTAGGCGTGCTAAG+GGG | 0.630349 | 7_1:-58899860 | Msa1026730:CDS |
| AGAATTGTTAATGTTGCTCG+TGG | 0.642633 | 7_1:-58899648 | Msa1026730:CDS |
| AGAGGAGACGAAGACGACGA+GGG | 0.647210 | 7_1:+58900912 | None:intergenic |
| GAAGTGTTTGAATCTTCCGG+TGG | 0.658805 | 7_1:-58900712 | Msa1026730:CDS |
| CTCCTACAATCTCACTCCTG+AGG | 0.670177 | 7_1:-58900800 | Msa1026730:CDS |
| CAAAGAGATGAAATCAGCGG+TGG | 0.673605 | 7_1:+58899743 | None:intergenic |
| AAGACGACGAGGGAACGGCG+GGG | 0.677271 | 7_1:+58900922 | None:intergenic |
| GATGCTCTCATCGTTCGCAG+TGG | 0.681979 | 7_1:-58900751 | Msa1026730:CDS |
| GTGCAAAGAGATGAAATCAG+CGG | 0.712158 | 7_1:+58899740 | None:intergenic |
| TGGTGTTGGTATTGATAACG+TGG | 0.740226 | 7_1:-58900665 | Msa1026730:CDS |
| TCGTGGTGGAGTCATTGACG+AGG | 0.747608 | 7_1:-58899631 | Msa1026730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATATAACAAACA+AGG | + | chr7_1:58900172-58900191 | None:intergenic | 10.0% |
| !! | AAAAAAAAATATAACAAACA+AGG | + | chr7_1:58900172-58900191 | None:intergenic | 10.0% |
| !!! | TTTTTTAGTGTTAGTTATTT+GGG | - | chr7_1:58900214-58900233 | Msa1026730:intron | 15.0% |
| !!! | TTTTTTAGTGTTAGTTATTT+GGG | - | chr7_1:58900214-58900233 | Msa1026730:intron | 15.0% |
| !!! | GTTTTTTAGTGTTAGTTATT+TGG | - | chr7_1:58900213-58900232 | Msa1026730:intron | 20.0% |
| !! | TTGAGATCTAATGATATATA+TGG | - | chr7_1:58900398-58900417 | Msa1026730:intron | 20.0% |
| !! | TGAGATCTAATGATATATAT+GGG | - | chr7_1:58900399-58900418 | Msa1026730:intron | 20.0% |
| !! | TTTGAGAAAATGACATTATT+CGG | + | chr7_1:58900576-58900595 | None:intergenic | 20.0% |
| !!! | GTTTTTTAGTGTTAGTTATT+TGG | - | chr7_1:58900213-58900232 | Msa1026730:intron | 20.0% |
| !! | TTGAGATCTAATGATATATA+TGG | - | chr7_1:58900398-58900417 | Msa1026730:intron | 20.0% |
| !! | TGAGATCTAATGATATATAT+GGG | - | chr7_1:58900399-58900418 | Msa1026730:intron | 20.0% |
| !! | TTTGAGAAAATGACATTATT+CGG | + | chr7_1:58900576-58900595 | None:intergenic | 20.0% |
| ! | AAAAACACAACAAAATCATC+AGG | + | chr7_1:58900199-58900218 | None:intergenic | 25.0% |
| !! | TGGTAAAATTTTCTGTGTAA+AGG | - | chr7_1:58900316-58900335 | Msa1026730:intron | 25.0% |
| !! | TAAAATTTTCTGTGTAAAGG+AGG | - | chr7_1:58900319-58900338 | Msa1026730:intron | 25.0% |
| ! | GAGATCTAATGATATATATG+GGG | - | chr7_1:58900400-58900419 | Msa1026730:intron | 25.0% |
| ! | AGATCTAATGATATATATGG+GGG | - | chr7_1:58900401-58900420 | Msa1026730:intron | 25.0% |
| !! | GCATAAGTTATTAGTTGATA+TGG | - | chr7_1:58900630-58900649 | Msa1026730:CDS | 25.0% |
| !!! | ATTGAATTAGTGTTGATACA+TGG | - | chr7_1:58900656-58900675 | Msa1026730:CDS | 25.0% |
| ! | AAAAACACAACAAAATCATC+AGG | + | chr7_1:58900199-58900218 | None:intergenic | 25.0% |
| !! | TGGTAAAATTTTCTGTGTAA+AGG | - | chr7_1:58900316-58900335 | Msa1026730:intron | 25.0% |
| !! | TAAAATTTTCTGTGTAAAGG+AGG | - | chr7_1:58900319-58900338 | Msa1026730:intron | 25.0% |
| ! | GAGATCTAATGATATATATG+GGG | - | chr7_1:58900400-58900419 | Msa1026730:intron | 25.0% |
| ! | AGATCTAATGATATATATGG+GGG | - | chr7_1:58900401-58900420 | Msa1026730:intron | 25.0% |
| !! | GCATAAGTTATTAGTTGATA+TGG | - | chr7_1:58900630-58900649 | Msa1026730:CDS | 25.0% |
| !!! | ATTGAATTAGTGTTGATACA+TGG | - | chr7_1:58900656-58900675 | Msa1026730:CDS | 25.0% |
| TTGTTAACTACTAGTTGACT+AGG | - | chr7_1:58900285-58900304 | Msa1026730:intron | 30.0% | |
| TTGTTAACTACTAGTTGACT+AGG | - | chr7_1:58900285-58900304 | Msa1026730:intron | 30.0% | |
| CACACACAAATTGGTATATG+AGG | + | chr7_1:58900356-58900375 | None:intergenic | 35.0% | |
| CTCATATACCAATTTGTGTG+TGG | - | chr7_1:58900354-58900373 | Msa1026730:intron | 35.0% | |
| AGAATTCACCACACACAAAT+TGG | + | chr7_1:58900365-58900384 | None:intergenic | 35.0% | |
| TTCTTCCGTGTAATCTGTAA+TGG | - | chr7_1:58900444-58900463 | Msa1026730:intron | 35.0% | |
| TCTTCCGTGTAATCTGTAAT+GGG | - | chr7_1:58900445-58900464 | Msa1026730:intron | 35.0% | |
| AACACCCATTACAGATTACA+CGG | + | chr7_1:58900452-58900471 | None:intergenic | 35.0% | |
| !! | TGTAATGGGTGTTAATGTTG+TGG | - | chr7_1:58900459-58900478 | Msa1026730:intron | 35.0% |
| ! | ACATTGTCACTTCTGATCAA+AGG | - | chr7_1:58900502-58900521 | Msa1026730:intron | 35.0% |
| TGTTGATACATGGTCAATAC+AGG | - | chr7_1:58900666-58900685 | Msa1026730:CDS | 35.0% | |
| GTTGATACATGGTCAATACA+GGG | - | chr7_1:58900667-58900686 | Msa1026730:CDS | 35.0% | |
| CTCATCATTGAGCATCTTAT+TGG | + | chr7_1:58900937-58900956 | None:intergenic | 35.0% | |
| ! | ACTTTTGCCAAGATGAAGAA+AGG | - | chr7_1:58900957-58900976 | Msa1026730:CDS | 35.0% |
| TCTAACTCCTTTCTTCATCT+TGG | + | chr7_1:58900967-58900986 | None:intergenic | 35.0% | |
| AGAATTGTTAATGTTGCTCG+TGG | - | chr7_1:58900984-58901003 | Msa1026730:CDS | 35.0% | |
| CACACACAAATTGGTATATG+AGG | + | chr7_1:58900356-58900375 | None:intergenic | 35.0% | |
| CTCATATACCAATTTGTGTG+TGG | - | chr7_1:58900354-58900373 | Msa1026730:intron | 35.0% | |
| AGAATTCACCACACACAAAT+TGG | + | chr7_1:58900365-58900384 | None:intergenic | 35.0% | |
| TTCTTCCGTGTAATCTGTAA+TGG | - | chr7_1:58900444-58900463 | Msa1026730:intron | 35.0% | |
| TCTTCCGTGTAATCTGTAAT+GGG | - | chr7_1:58900445-58900464 | Msa1026730:intron | 35.0% | |
| AACACCCATTACAGATTACA+CGG | + | chr7_1:58900452-58900471 | None:intergenic | 35.0% | |
| !! | TGTAATGGGTGTTAATGTTG+TGG | - | chr7_1:58900459-58900478 | Msa1026730:intron | 35.0% |
| ! | ACATTGTCACTTCTGATCAA+AGG | - | chr7_1:58900502-58900521 | Msa1026730:intron | 35.0% |
| TGTTGATACATGGTCAATAC+AGG | - | chr7_1:58900666-58900685 | Msa1026730:CDS | 35.0% | |
| GTTGATACATGGTCAATACA+GGG | - | chr7_1:58900667-58900686 | Msa1026730:CDS | 35.0% | |
| CTCATCATTGAGCATCTTAT+TGG | + | chr7_1:58900937-58900956 | None:intergenic | 35.0% | |
| ! | ACTTTTGCCAAGATGAAGAA+AGG | - | chr7_1:58900957-58900976 | Msa1026730:CDS | 35.0% |
| TCTAACTCCTTTCTTCATCT+TGG | + | chr7_1:58900967-58900986 | None:intergenic | 35.0% | |
| AGAATTGTTAATGTTGCTCG+TGG | - | chr7_1:58900984-58901003 | Msa1026730:CDS | 35.0% | |
| AAACACTTCACGTGAGACTT+TGG | + | chr7_1:58899909-58899928 | None:intergenic | 40.0% | |
| ! | CGTGAAGTGTTTGAATCTTC+CGG | - | chr7_1:58899917-58899936 | Msa1026730:CDS | 40.0% |
| !! | TGGTGTTGGTATTGATAACG+TGG | - | chr7_1:58899967-58899986 | Msa1026730:intron | 40.0% |
| !! | TGGTATTGATAACGTGGATC+TGG | - | chr7_1:58899973-58899992 | Msa1026730:intron | 40.0% |
| AACAACCAAGCAACCATGTT+CGG | + | chr7_1:58900008-58900027 | None:intergenic | 40.0% | |
| TAGTTGACTAGGTGACGTAA+TGG | - | chr7_1:58900296-58900315 | Msa1026730:intron | 40.0% | |
| ACATGGTCAATACAGGGAAA+TGG | - | chr7_1:58900673-58900692 | Msa1026730:CDS | 40.0% | |
| CATGGTCAATACAGGGAAAT+GGG | - | chr7_1:58900674-58900693 | Msa1026730:CDS | 40.0% | |
| TGGGAGAGAAGTAAGTATGT+TGG | - | chr7_1:58900693-58900712 | Msa1026730:CDS | 40.0% | |
| TATGTTGGAGTTTCCCTAGT+TGG | - | chr7_1:58900708-58900727 | Msa1026730:CDS | 40.0% | |
| ATGTTGGAGTTTCCCTAGTT+GGG | - | chr7_1:58900709-58900728 | Msa1026730:CDS | 40.0% | |
| !! | ACACTTGCTGTAATGGGATT+TGG | - | chr7_1:58900735-58900754 | Msa1026730:CDS | 40.0% |
| !! | CACTTGCTGTAATGGGATTT+GGG | - | chr7_1:58900736-58900755 | Msa1026730:CDS | 40.0% |
| ! | TGTTGAGCTTGTGAGTTTTG+AGG | - | chr7_1:58900857-58900876 | Msa1026730:CDS | 40.0% |
| GTGCAAAGAGATGAAATCAG+CGG | + | chr7_1:58900895-58900914 | None:intergenic | 40.0% | |
| ! | TTGAGCATCTTATTGGTAGC+AGG | + | chr7_1:58900930-58900949 | None:intergenic | 40.0% |
| ATTGTTAATGTTGCTCGTGG+TGG | - | chr7_1:58900987-58901006 | Msa1026730:CDS | 40.0% | |
| !! | CTTGTTAGAGCATTGGATTC+TGG | - | chr7_1:58901029-58901048 | Msa1026730:CDS | 40.0% |
| AAACACTTCACGTGAGACTT+TGG | + | chr7_1:58899909-58899928 | None:intergenic | 40.0% | |
| ! | CGTGAAGTGTTTGAATCTTC+CGG | - | chr7_1:58899917-58899936 | Msa1026730:CDS | 40.0% |
| !! | TGGTGTTGGTATTGATAACG+TGG | - | chr7_1:58899967-58899986 | Msa1026730:intron | 40.0% |
| !! | TGGTATTGATAACGTGGATC+TGG | - | chr7_1:58899973-58899992 | Msa1026730:intron | 40.0% |
| AACAACCAAGCAACCATGTT+CGG | + | chr7_1:58900008-58900027 | None:intergenic | 40.0% | |
| TAGTTGACTAGGTGACGTAA+TGG | - | chr7_1:58900296-58900315 | Msa1026730:intron | 40.0% | |
| ACATGGTCAATACAGGGAAA+TGG | - | chr7_1:58900673-58900692 | Msa1026730:CDS | 40.0% | |
| CATGGTCAATACAGGGAAAT+GGG | - | chr7_1:58900674-58900693 | Msa1026730:CDS | 40.0% | |
| TGGGAGAGAAGTAAGTATGT+TGG | - | chr7_1:58900693-58900712 | Msa1026730:CDS | 40.0% | |
| TATGTTGGAGTTTCCCTAGT+TGG | - | chr7_1:58900708-58900727 | Msa1026730:CDS | 40.0% | |
| ATGTTGGAGTTTCCCTAGTT+GGG | - | chr7_1:58900709-58900728 | Msa1026730:CDS | 40.0% | |
| !! | ACACTTGCTGTAATGGGATT+TGG | - | chr7_1:58900735-58900754 | Msa1026730:CDS | 40.0% |
| !! | CACTTGCTGTAATGGGATTT+GGG | - | chr7_1:58900736-58900755 | Msa1026730:CDS | 40.0% |
| ! | TGTTGAGCTTGTGAGTTTTG+AGG | - | chr7_1:58900857-58900876 | Msa1026730:CDS | 40.0% |
| GTGCAAAGAGATGAAATCAG+CGG | + | chr7_1:58900895-58900914 | None:intergenic | 40.0% | |
| ! | TTGAGCATCTTATTGGTAGC+AGG | + | chr7_1:58900930-58900949 | None:intergenic | 40.0% |
| ATTGTTAATGTTGCTCGTGG+TGG | - | chr7_1:58900987-58901006 | Msa1026730:CDS | 40.0% | |
| !! | CTTGTTAGAGCATTGGATTC+TGG | - | chr7_1:58901029-58901048 | Msa1026730:CDS | 40.0% |
| GAGAAAGGGAAGATGGTGAA+GGG | + | chr7_1:58899634-58899653 | None:intergenic | 45.0% | |
| AGAGAAAGGGAAGATGGTGA+AGG | + | chr7_1:58899635-58899654 | None:intergenic | 45.0% | |
| GAGTTTGGAGGAGAGAGAAA+GGG | + | chr7_1:58899648-58899667 | None:intergenic | 45.0% | |
| AGCATCACAGAGAGAGATCT+TGG | + | chr7_1:58899867-58899886 | None:intergenic | 45.0% | |
| ! | GAAGTGTTTGAATCTTCCGG+TGG | - | chr7_1:58899920-58899939 | Msa1026730:CDS | 45.0% |
| AACAACCTTGAGTCTTCCAC+CGG | + | chr7_1:58899939-58899958 | None:intergenic | 45.0% | |
| CATGGCTAGAAATGTTGCTC+AGG | - | chr7_1:58900087-58900106 | Msa1026730:intron | 45.0% | |
| GCTGATGCTTCTATCAAAGC+TGG | - | chr7_1:58900109-58900128 | Msa1026730:intron | 45.0% | |
| AGCAAGTGTCTTCCCAACTA+GGG | + | chr7_1:58900724-58900743 | None:intergenic | 45.0% | |
| !! | TGGGAAGACACTTGCTGTAA+TGG | - | chr7_1:58900728-58900747 | Msa1026730:CDS | 45.0% |
| !! | GGGAAGACACTTGCTGTAAT+GGG | - | chr7_1:58900729-58900748 | Msa1026730:CDS | 45.0% |
| ! | TGCTGTAATGGGATTTGGGA+AGG | - | chr7_1:58900740-58900759 | Msa1026730:CDS | 45.0% |
| ! | GTAATGGGATTTGGGAAGGT+TGG | - | chr7_1:58900744-58900763 | Msa1026730:CDS | 45.0% |
| ATTTGGGAAGGTTGGAACTG+AGG | - | chr7_1:58900752-58900771 | Msa1026730:CDS | 45.0% | |
| !!! | TGAGCTTGTGAGTTTTGAGG+AGG | - | chr7_1:58900860-58900879 | Msa1026730:CDS | 45.0% |
| CAAAGAGATGAAATCAGCGG+TGG | + | chr7_1:58900892-58900911 | None:intergenic | 45.0% | |
| ! | TTATTGGTAGCAGGCGTAAG+AGG | + | chr7_1:58900921-58900940 | None:intergenic | 45.0% |
| ! | GGATGCACTTGTTAGAGCAT+TGG | - | chr7_1:58901022-58901041 | Msa1026730:CDS | 45.0% |
| GAGAAAGGGAAGATGGTGAA+GGG | + | chr7_1:58899634-58899653 | None:intergenic | 45.0% | |
| AGAGAAAGGGAAGATGGTGA+AGG | + | chr7_1:58899635-58899654 | None:intergenic | 45.0% | |
| GAGTTTGGAGGAGAGAGAAA+GGG | + | chr7_1:58899648-58899667 | None:intergenic | 45.0% | |
| AGCATCACAGAGAGAGATCT+TGG | + | chr7_1:58899867-58899886 | None:intergenic | 45.0% | |
| ! | GAAGTGTTTGAATCTTCCGG+TGG | - | chr7_1:58899920-58899939 | Msa1026730:CDS | 45.0% |
| AACAACCTTGAGTCTTCCAC+CGG | + | chr7_1:58899939-58899958 | None:intergenic | 45.0% | |
| CATGGCTAGAAATGTTGCTC+AGG | - | chr7_1:58900087-58900106 | Msa1026730:intron | 45.0% | |
| GCTGATGCTTCTATCAAAGC+TGG | - | chr7_1:58900109-58900128 | Msa1026730:intron | 45.0% | |
| AGCAAGTGTCTTCCCAACTA+GGG | + | chr7_1:58900724-58900743 | None:intergenic | 45.0% | |
| !! | TGGGAAGACACTTGCTGTAA+TGG | - | chr7_1:58900728-58900747 | Msa1026730:CDS | 45.0% |
| !! | GGGAAGACACTTGCTGTAAT+GGG | - | chr7_1:58900729-58900748 | Msa1026730:CDS | 45.0% |
| ! | TGCTGTAATGGGATTTGGGA+AGG | - | chr7_1:58900740-58900759 | Msa1026730:CDS | 45.0% |
| ! | GTAATGGGATTTGGGAAGGT+TGG | - | chr7_1:58900744-58900763 | Msa1026730:CDS | 45.0% |
| ATTTGGGAAGGTTGGAACTG+AGG | - | chr7_1:58900752-58900771 | Msa1026730:CDS | 45.0% | |
| !!! | TGAGCTTGTGAGTTTTGAGG+AGG | - | chr7_1:58900860-58900879 | Msa1026730:CDS | 45.0% |
| CAAAGAGATGAAATCAGCGG+TGG | + | chr7_1:58900892-58900911 | None:intergenic | 45.0% | |
| ! | TTATTGGTAGCAGGCGTAAG+AGG | + | chr7_1:58900921-58900940 | None:intergenic | 45.0% |
| ! | GGATGCACTTGTTAGAGCAT+TGG | - | chr7_1:58901022-58901041 | Msa1026730:CDS | 45.0% |
| GGTTTGGGAAGTAGCGTTAG+CGG | + | chr7_1:58899603-58899622 | None:intergenic | 50.0% | |
| GAGGAGAGAGAAAGGGAAGA+TGG | + | chr7_1:58899641-58899660 | None:intergenic | 50.0% | |
| GGAGTTTGGAGGAGAGAGAA+AGG | + | chr7_1:58899649-58899668 | None:intergenic | 50.0% | |
| CTCCTACAATCTCACTCCTG+AGG | - | chr7_1:58899832-58899851 | Msa1026730:CDS | 50.0% | |
| CTCCTCAGGAGTGAGATTGT+AGG | + | chr7_1:58899837-58899856 | None:intergenic | 50.0% | |
| ! | ATCTTGGTGCAAAGCTCCTC+AGG | + | chr7_1:58899851-58899870 | None:intergenic | 50.0% |
| ATCTTCCGGTGGAAGACTCA+AGG | - | chr7_1:58899931-58899950 | Msa1026730:CDS | 50.0% | |
| GGTGGAAGACTCAAGGTTGT+TGG | - | chr7_1:58899938-58899957 | Msa1026730:CDS | 50.0% | |
| ! | CTCAAGGTTGTTGGTAGAGC+TGG | - | chr7_1:58899947-58899966 | Msa1026730:CDS | 50.0% |
| ! | GTTGTTGGTAGAGCTGGTGT+TGG | - | chr7_1:58899953-58899972 | Msa1026730:intron | 50.0% |
| CAAGCAACCATGTTCGGTAG+CGG | + | chr7_1:58900002-58900021 | None:intergenic | 50.0% | |
| TCAGTGTCAGACACTCACAC+AGG | + | chr7_1:58900533-58900552 | None:intergenic | 50.0% | |
| CAGCAAGTGTCTTCCCAACT+AGG | + | chr7_1:58900725-58900744 | None:intergenic | 50.0% | |
| AGGTTGGAACTGAGGTTGCT+AGG | - | chr7_1:58900760-58900779 | Msa1026730:CDS | 50.0% | |
| ! | TGCTAAGGGGCTTGGTATGA+AGG | - | chr7_1:58900785-58900804 | Msa1026730:CDS | 50.0% |
| ATAGCATGAGCACGATCAGC+AGG | + | chr7_1:58900834-58900853 | None:intergenic | 50.0% | |
| GCTGATCGTGCTCATGCTAT+TGG | - | chr7_1:58900834-58900853 | Msa1026730:CDS | 50.0% | |
| GGTTTGGGAAGTAGCGTTAG+CGG | + | chr7_1:58899603-58899622 | None:intergenic | 50.0% | |
| GAGGAGAGAGAAAGGGAAGA+TGG | + | chr7_1:58899641-58899660 | None:intergenic | 50.0% | |
| GGAGTTTGGAGGAGAGAGAA+AGG | + | chr7_1:58899649-58899668 | None:intergenic | 50.0% | |
| CTCCTACAATCTCACTCCTG+AGG | - | chr7_1:58899832-58899851 | Msa1026730:CDS | 50.0% | |
| CTCCTCAGGAGTGAGATTGT+AGG | + | chr7_1:58899837-58899856 | None:intergenic | 50.0% | |
| ! | ATCTTGGTGCAAAGCTCCTC+AGG | + | chr7_1:58899851-58899870 | None:intergenic | 50.0% |
| ATCTTCCGGTGGAAGACTCA+AGG | - | chr7_1:58899931-58899950 | Msa1026730:CDS | 50.0% | |
| GGTGGAAGACTCAAGGTTGT+TGG | - | chr7_1:58899938-58899957 | Msa1026730:CDS | 50.0% | |
| ! | CTCAAGGTTGTTGGTAGAGC+TGG | - | chr7_1:58899947-58899966 | Msa1026730:CDS | 50.0% |
| ! | GTTGTTGGTAGAGCTGGTGT+TGG | - | chr7_1:58899953-58899972 | Msa1026730:intron | 50.0% |
| CAAGCAACCATGTTCGGTAG+CGG | + | chr7_1:58900002-58900021 | None:intergenic | 50.0% | |
| TCAGTGTCAGACACTCACAC+AGG | + | chr7_1:58900533-58900552 | None:intergenic | 50.0% | |
| CAGCAAGTGTCTTCCCAACT+AGG | + | chr7_1:58900725-58900744 | None:intergenic | 50.0% | |
| AGGTTGGAACTGAGGTTGCT+AGG | - | chr7_1:58900760-58900779 | Msa1026730:CDS | 50.0% | |
| ! | TGCTAAGGGGCTTGGTATGA+AGG | - | chr7_1:58900785-58900804 | Msa1026730:CDS | 50.0% |
| ATAGCATGAGCACGATCAGC+AGG | + | chr7_1:58900834-58900853 | None:intergenic | 50.0% | |
| GCTGATCGTGCTCATGCTAT+TGG | - | chr7_1:58900834-58900853 | Msa1026730:CDS | 50.0% | |
| TTGGGAAGTAGCGTTAGCGG+CGG | + | chr7_1:58899600-58899619 | None:intergenic | 55.0% | |
| TGAAGGGAGACGGAGGGTTT+GGG | + | chr7_1:58899618-58899637 | None:intergenic | 55.0% | |
| AGATGGTGAAGGGAGACGGA+GGG | + | chr7_1:58899624-58899643 | None:intergenic | 55.0% | |
| AAGATGGTGAAGGGAGACGG+AGG | + | chr7_1:58899625-58899644 | None:intergenic | 55.0% | |
| GGGAAGATGGTGAAGGGAGA+CGG | + | chr7_1:58899628-58899647 | None:intergenic | 55.0% | |
| AGACGAAGACGACGAGGGAA+CGG | + | chr7_1:58899718-58899737 | None:intergenic | 55.0% | |
| AGAGGAGACGAAGACGACGA+GGG | + | chr7_1:58899723-58899742 | None:intergenic | 55.0% | |
| AAGAGGAGACGAAGACGACG+AGG | + | chr7_1:58899724-58899743 | None:intergenic | 55.0% | |
| ! | TTTTCAGCGACGAGGACGGT+GGG | + | chr7_1:58899761-58899780 | None:intergenic | 55.0% |
| ! | GAGCTTTTCAGCGACGAGGA+CGG | + | chr7_1:58899765-58899784 | None:intergenic | 55.0% |
| GTCCTCGTCGCTGAAAAGCT+CGG | - | chr7_1:58899764-58899783 | Msa1026730:CDS | 55.0% | |
| GATGCTCTCATCGTTCGCAG+TGG | - | chr7_1:58899881-58899900 | Msa1026730:CDS | 55.0% | |
| CGCTACCGAACATGGTTGCT+TGG | - | chr7_1:58900000-58900019 | Msa1026730:intron | 55.0% | |
| TGAGGTTGCTAGGCGTGCTA+AGG | - | chr7_1:58900770-58900789 | Msa1026730:CDS | 55.0% | |
| GAGGTTGCTAGGCGTGCTAA+GGG | - | chr7_1:58900771-58900790 | Msa1026730:CDS | 55.0% | |
| AGGTTGCTAGGCGTGCTAAG+GGG | - | chr7_1:58900772-58900791 | Msa1026730:CDS | 55.0% | |
| ! | GCACGATCAGCAGGAGCATA+AGG | + | chr7_1:58900825-58900844 | None:intergenic | 55.0% |
| ! | TCGTGGTGGAGTCATTGACG+AGG | - | chr7_1:58901001-58901020 | Msa1026730:CDS | 55.0% |
| TTGGGAAGTAGCGTTAGCGG+CGG | + | chr7_1:58899600-58899619 | None:intergenic | 55.0% | |
| TGAAGGGAGACGGAGGGTTT+GGG | + | chr7_1:58899618-58899637 | None:intergenic | 55.0% | |
| AGATGGTGAAGGGAGACGGA+GGG | + | chr7_1:58899624-58899643 | None:intergenic | 55.0% | |
| AAGATGGTGAAGGGAGACGG+AGG | + | chr7_1:58899625-58899644 | None:intergenic | 55.0% | |
| GGGAAGATGGTGAAGGGAGA+CGG | + | chr7_1:58899628-58899647 | None:intergenic | 55.0% | |
| AGACGAAGACGACGAGGGAA+CGG | + | chr7_1:58899718-58899737 | None:intergenic | 55.0% | |
| AGAGGAGACGAAGACGACGA+GGG | + | chr7_1:58899723-58899742 | None:intergenic | 55.0% | |
| AAGAGGAGACGAAGACGACG+AGG | + | chr7_1:58899724-58899743 | None:intergenic | 55.0% | |
| ! | TTTTCAGCGACGAGGACGGT+GGG | + | chr7_1:58899761-58899780 | None:intergenic | 55.0% |
| ! | GAGCTTTTCAGCGACGAGGA+CGG | + | chr7_1:58899765-58899784 | None:intergenic | 55.0% |
| GTCCTCGTCGCTGAAAAGCT+CGG | - | chr7_1:58899764-58899783 | Msa1026730:CDS | 55.0% | |
| GATGCTCTCATCGTTCGCAG+TGG | - | chr7_1:58899881-58899900 | Msa1026730:CDS | 55.0% | |
| CGCTACCGAACATGGTTGCT+TGG | - | chr7_1:58900000-58900019 | Msa1026730:intron | 55.0% | |
| TGAGGTTGCTAGGCGTGCTA+AGG | - | chr7_1:58900770-58900789 | Msa1026730:CDS | 55.0% | |
| GAGGTTGCTAGGCGTGCTAA+GGG | - | chr7_1:58900771-58900790 | Msa1026730:CDS | 55.0% | |
| AGGTTGCTAGGCGTGCTAAG+GGG | - | chr7_1:58900772-58900791 | Msa1026730:CDS | 55.0% | |
| ! | GCACGATCAGCAGGAGCATA+AGG | + | chr7_1:58900825-58900844 | None:intergenic | 55.0% |
| ! | TCGTGGTGGAGTCATTGACG+AGG | - | chr7_1:58901001-58901020 | Msa1026730:CDS | 55.0% |
| GTGAAGGGAGACGGAGGGTT+TGG | + | chr7_1:58899619-58899638 | None:intergenic | 60.0% | |
| GGAGGAGAGAGGGAGTTTGG+AGG | + | chr7_1:58899660-58899679 | None:intergenic | 60.0% | |
| ! | GGGTTTAGCGTCGAGGGAAG+AGG | + | chr7_1:58899741-58899760 | None:intergenic | 60.0% |
| ! | GACGGTGGGTTTAGCGTCGA+GGG | + | chr7_1:58899747-58899766 | None:intergenic | 60.0% |
| ! | CTTTTCAGCGACGAGGACGG+TGG | + | chr7_1:58899762-58899781 | None:intergenic | 60.0% |
| GCTGAAAAGCTCGGCGAAGC+TGG | - | chr7_1:58899773-58899792 | Msa1026730:CDS | 60.0% | |
| ! | GCAACCATGTTCGGTAGCGG+CGG | + | chr7_1:58899999-58900018 | None:intergenic | 60.0% |
| GCGGCAACAGTGTTAGCGGT+GGG | + | chr7_1:58900037-58900056 | None:intergenic | 60.0% | |
| AGCGGCGGCAACAGTGTTAG+CGG | + | chr7_1:58900041-58900060 | None:intergenic | 60.0% | |
| ACTGTTGCCGCCGCTGAACA+CGG | - | chr7_1:58900046-58900065 | Msa1026730:intron | 60.0% | |
| GATCGCGCTCTTAGCTGGCA+TGG | - | chr7_1:58900069-58900088 | Msa1026730:intron | 60.0% | |
| GTGAAGGGAGACGGAGGGTT+TGG | + | chr7_1:58899619-58899638 | None:intergenic | 60.0% | |
| GGAGGAGAGAGGGAGTTTGG+AGG | + | chr7_1:58899660-58899679 | None:intergenic | 60.0% | |
| ! | GGGTTTAGCGTCGAGGGAAG+AGG | + | chr7_1:58899741-58899760 | None:intergenic | 60.0% |
| ! | GACGGTGGGTTTAGCGTCGA+GGG | + | chr7_1:58899747-58899766 | None:intergenic | 60.0% |
| ! | CTTTTCAGCGACGAGGACGG+TGG | + | chr7_1:58899762-58899781 | None:intergenic | 60.0% |
| GCTGAAAAGCTCGGCGAAGC+TGG | - | chr7_1:58899773-58899792 | Msa1026730:CDS | 60.0% | |
| ! | GCAACCATGTTCGGTAGCGG+CGG | + | chr7_1:58899999-58900018 | None:intergenic | 60.0% |
| GCGGCAACAGTGTTAGCGGT+GGG | + | chr7_1:58900037-58900056 | None:intergenic | 60.0% | |
| AGCGGCGGCAACAGTGTTAG+CGG | + | chr7_1:58900041-58900060 | None:intergenic | 60.0% | |
| ACTGTTGCCGCCGCTGAACA+CGG | - | chr7_1:58900046-58900065 | Msa1026730:intron | 60.0% | |
| GATCGCGCTCTTAGCTGGCA+TGG | - | chr7_1:58900069-58900088 | Msa1026730:intron | 60.0% | |
| GGAAGTAGCGTTAGCGGCGG+CGG | + | chr7_1:58899597-58899616 | None:intergenic | 65.0% | |
| GGCGGAGGAGAGAGGGAGTT+TGG | + | chr7_1:58899663-58899682 | None:intergenic | 65.0% | |
| CGGAGAAGGCGGAGGAGAGA+GGG | + | chr7_1:58899670-58899689 | None:intergenic | 65.0% | |
| ACGGAGAAGGCGGAGGAGAG+AGG | + | chr7_1:58899671-58899690 | None:intergenic | 65.0% | |
| ACGGAGGGAGACGGAGAAGG+CGG | + | chr7_1:58899681-58899700 | None:intergenic | 65.0% | |
| GTTGTGGGGACGGAGGGAGA+CGG | + | chr7_1:58899690-58899709 | None:intergenic | 65.0% | |
| AAGACGACGAGGGAACGGCG+GGG | + | chr7_1:58899713-58899732 | None:intergenic | 65.0% | |
| GAAGACGACGAGGGAACGGC+GGG | + | chr7_1:58899714-58899733 | None:intergenic | 65.0% | |
| CGAAGACGACGAGGGAACGG+CGG | + | chr7_1:58899715-58899734 | None:intergenic | 65.0% | |
| ! | GGACGGTGGGTTTAGCGTCG+AGG | + | chr7_1:58899748-58899767 | None:intergenic | 65.0% |
| ! | CGCCGAGCTTTTCAGCGACG+AGG | + | chr7_1:58899769-58899788 | None:intergenic | 65.0% |
| GGCGGCAACAGTGTTAGCGG+TGG | + | chr7_1:58900038-58900057 | None:intergenic | 65.0% | |
| CTGTTGCCGCCGCTGAACAC+GGG | - | chr7_1:58900047-58900066 | Msa1026730:intron | 65.0% | |
| GAGCGCGATCCCGTGTTCAG+CGG | + | chr7_1:58900059-58900078 | None:intergenic | 65.0% | |
| CACGGGATCGCGCTCTTAGC+TGG | - | chr7_1:58900064-58900083 | Msa1026730:intron | 65.0% | |
| GCTAGGCGTGCTAAGGGGCT+TGG | - | chr7_1:58900777-58900796 | Msa1026730:CDS | 65.0% | |
| GGAAGTAGCGTTAGCGGCGG+CGG | + | chr7_1:58899597-58899616 | None:intergenic | 65.0% | |
| GGCGGAGGAGAGAGGGAGTT+TGG | + | chr7_1:58899663-58899682 | None:intergenic | 65.0% | |
| CGGAGAAGGCGGAGGAGAGA+GGG | + | chr7_1:58899670-58899689 | None:intergenic | 65.0% | |
| ACGGAGAAGGCGGAGGAGAG+AGG | + | chr7_1:58899671-58899690 | None:intergenic | 65.0% | |
| ACGGAGGGAGACGGAGAAGG+CGG | + | chr7_1:58899681-58899700 | None:intergenic | 65.0% | |
| GTTGTGGGGACGGAGGGAGA+CGG | + | chr7_1:58899690-58899709 | None:intergenic | 65.0% | |
| AAGACGACGAGGGAACGGCG+GGG | + | chr7_1:58899713-58899732 | None:intergenic | 65.0% | |
| GAAGACGACGAGGGAACGGC+GGG | + | chr7_1:58899714-58899733 | None:intergenic | 65.0% | |
| CGAAGACGACGAGGGAACGG+CGG | + | chr7_1:58899715-58899734 | None:intergenic | 65.0% | |
| ! | GGACGGTGGGTTTAGCGTCG+AGG | + | chr7_1:58899748-58899767 | None:intergenic | 65.0% |
| ! | CGCCGAGCTTTTCAGCGACG+AGG | + | chr7_1:58899769-58899788 | None:intergenic | 65.0% |
| GGCGGCAACAGTGTTAGCGG+TGG | + | chr7_1:58900038-58900057 | None:intergenic | 65.0% | |
| CTGTTGCCGCCGCTGAACAC+GGG | - | chr7_1:58900047-58900066 | Msa1026730:intron | 65.0% | |
| GAGCGCGATCCCGTGTTCAG+CGG | + | chr7_1:58900059-58900078 | None:intergenic | 65.0% | |
| CACGGGATCGCGCTCTTAGC+TGG | - | chr7_1:58900064-58900083 | Msa1026730:intron | 65.0% | |
| GCTAGGCGTGCTAAGGGGCT+TGG | - | chr7_1:58900777-58900796 | Msa1026730:CDS | 65.0% | |
| GAGGGAGACGGAGAAGGCGG+AGG | + | chr7_1:58899678-58899697 | None:intergenic | 70.0% | |
| GGGACGGAGGGAGACGGAGA+AGG | + | chr7_1:58899684-58899703 | None:intergenic | 70.0% | |
| AACGGCGGGGGTTGTGGGGA+CGG | + | chr7_1:58899700-58899719 | None:intergenic | 70.0% | |
| AGGGAACGGCGGGGGTTGTG+GGG | + | chr7_1:58899704-58899723 | None:intergenic | 70.0% | |
| GAGGGAACGGCGGGGGTTGT+GGG | + | chr7_1:58899705-58899724 | None:intergenic | 70.0% | |
| AGACGACGAGGGAACGGCGG+GGG | + | chr7_1:58899712-58899731 | None:intergenic | 70.0% | |
| CTGGCCGCCGCTACCGAACA+TGG | - | chr7_1:58899992-58900011 | Msa1026730:intron | 70.0% | |
| CGCGATCCCGTGTTCAGCGG+CGG | + | chr7_1:58900056-58900075 | None:intergenic | 70.0% | |
| GAGGGAGACGGAGAAGGCGG+AGG | + | chr7_1:58899678-58899697 | None:intergenic | 70.0% | |
| GGGACGGAGGGAGACGGAGA+AGG | + | chr7_1:58899684-58899703 | None:intergenic | 70.0% | |
| AACGGCGGGGGTTGTGGGGA+CGG | + | chr7_1:58899700-58899719 | None:intergenic | 70.0% | |
| AGGGAACGGCGGGGGTTGTG+GGG | + | chr7_1:58899704-58899723 | None:intergenic | 70.0% | |
| GAGGGAACGGCGGGGGTTGT+GGG | + | chr7_1:58899705-58899724 | None:intergenic | 70.0% | |
| AGACGACGAGGGAACGGCGG+GGG | + | chr7_1:58899712-58899731 | None:intergenic | 70.0% | |
| CTGGCCGCCGCTACCGAACA+TGG | - | chr7_1:58899992-58900011 | Msa1026730:intron | 70.0% | |
| CGCGATCCCGTGTTCAGCGG+CGG | + | chr7_1:58900056-58900075 | None:intergenic | 70.0% | |
| GCGGGGGTTGTGGGGACGGA+GGG | + | chr7_1:58899696-58899715 | None:intergenic | 75.0% | |
| CGAGGGAACGGCGGGGGTTG+TGG | + | chr7_1:58899706-58899725 | None:intergenic | 75.0% | |
| GCGGGGGTTGTGGGGACGGA+GGG | + | chr7_1:58899696-58899715 | None:intergenic | 75.0% | |
| CGAGGGAACGGCGGGGGTTG+TGG | + | chr7_1:58899706-58899725 | None:intergenic | 75.0% | |
| ! | GGCGGGGGTTGTGGGGACGG+AGG | + | chr7_1:58899697-58899716 | None:intergenic | 80.0% |
| ! | GGCGGGGGTTGTGGGGACGG+AGG | + | chr7_1:58899697-58899716 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 58899590 | 58901064 | 58899590 | ID=Msa1026730;Name=Msa1026730 |
| chr7_1 | mRNA | 58899590 | 58901064 | 58899590 | ID=Msa1026730-mRNA-1;Parent=Msa1026730;Name=Msa1026730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|306 |
| chr7_1 | exon | 58900524 | 58901064 | 58900524 | ID=Msa1026730-mRNA-1:exon:11835;Parent=Msa1026730-mRNA-1 |
| chr7_1 | exon | 58899590 | 58899966 | 58899590 | ID=Msa1026730-mRNA-1:exon:11834;Parent=Msa1026730-mRNA-1 |
| chr7_1 | CDS | 58900524 | 58901064 | 58900524 | ID=Msa1026730-mRNA-1:cds;Parent=Msa1026730-mRNA-1 |
| chr7_1 | CDS | 58899590 | 58899966 | 58899590 | ID=Msa1026730-mRNA-1:cds;Parent=Msa1026730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
