AlfalfaGEDB | Msa0739330

M. sativa cultivar zhongmu-4 / Msa0739330

KEGG: K05933
GO: GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009593 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009815 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010817 GO:0012505 GO:0016020 GO:0016491 GO:0016638 GO:0016641 GO:0030054 GO:0030312 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043449 GO:0043450 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0065007 GO:0065008 GO:0070542 GO:0070887 GO:0071229 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071396 GO:0071398 GO:0071704 GO:0071731 GO:0071732 GO:0071944 GO:0097366 GO:1900140 GO:1900673 GO:1900674 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:2000026
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739330	XP_003616884.1	97.799	318	7	0	1	318	1	318	0.0	649

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739330	sp\|Q9MB94\|ACCO_PRUMU	81.073	317	58	1	2	316	1	317	0.0	554

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739330	G7KH99	97.799	318	7	0	1	318	1	318	0.0	649

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0043840	Msa0739330	-0.810331	1.215639e-50	-8.615850e-47
Msa0090500	Msa0739330	-0.816987	4.164588e-52	-8.615850e-47
Msa0137970	Msa0739330	-0.804474	2.123633e-49	-8.615850e-47
Msa0183920	Msa0739330	-0.822949	1.801925e-53	-8.615850e-47
Msa0230980	Msa0739330	0.827202	1.782155e-54	-8.615850e-47
Msa0270460	Msa0739330	0.820558	6.438308e-53	-8.615850e-47
Msa0309060	Msa0739330	0.818180	2.242636e-52	-8.615850e-47
Msa0336430	Msa0739330	-0.803109	4.078487e-49	-8.615850e-47
Msa0336460	Msa0739330	-0.804274	2.336532e-49	-8.615850e-47
Msa0336520	Msa0739330	-0.814921	1.204375e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739330	MtrunA17_Chr5g0439011	97.799	318	7	0	1	318	1	318	0.0	649
Msa0739330	MtrunA17_Chr3g0121141	85.489	317	42	1	2	318	1	313	0.0	572
Msa0739330	MtrunA17_Chr2g0289341	72.414	319	84	2	2	318	1	317	1.70e-178	496
Msa0739330	MtrunA17_Chr3g0125201	49.196	311	146	3	3	306	1	306	3.64e-106	312
Msa0739330	MtrunA17_Chr6g0488511	47.078	308	148	5	3	306	1	297	4.79e-98	291
Msa0739330	MtrunA17_Chr4g0075471	79.856	139	27	1	155	293	24	161	9.91e-79	237
Msa0739330	MtrunA17_Chr5g0437181	38.019	313	179	6	4	306	48	355	4.84e-69	219
Msa0739330	MtrunA17_Chr4g0075431	63.415	164	59	1	2	165	1	163	5.96e-68	210
Msa0739330	MtrunA17_Chr3g0113641	36.278	317	185	7	3	308	48	358	3.48e-64	206
Msa0739330	MtrunA17_Chr4g0006371	34.824	313	190	5	3	305	60	368	3.62e-64	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739330	AT1G05010.1	72.897	321	81	4	2	316	1	321	6.52e-176	489
Msa0739330	AT1G12010.1	68.750	320	93	2	1	318	3	317	1.50e-171	479
Msa0739330	AT1G62380.1	67.925	318	95	2	3	318	5	317	3.02e-170	475
Msa0739330	AT2G19590.1	46.906	307	149	4	3	307	9	303	5.06e-104	307
Msa0739330	AT1G77330.1	48.726	314	142	5	3	306	1	305	6.65e-99	294
Msa0739330	AT2G19590.2	47.636	275	130	4	35	307	26	288	7.33e-93	278
Msa0739330	AT5G05600.1	35.836	293	174	5	4	286	61	349	3.55e-59	194
Msa0739330	AT3G11180.1	34.385	317	189	7	3	311	93	398	6.10e-57	189
Msa0739330	AT3G11180.2	34.286	315	185	7	3	301	93	401	6.22e-57	189
Msa0739330	AT4G10490.1	35.117	299	182	7	4	295	41	334	3.10e-56	186

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Find 100 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTAGCTGGTGAATCA+TGG	0.516202	5_1:-57477812	Msa0739330:intron
AAAGAATCAAATGTTAATTT+GGG	0.360868	5_1:-57475492	Msa0739330:CDS
AAATGAAAATAATAATAATT+AGG	0.156400	5_1:-57475400	Msa0739330:three_prime_UTR
AAATGGCAAGTACAAGAGTG+TGG	0.640556	5_1:-57475730	Msa0739330:CDS
AACAATAGAGTGGCGCATTG+GGG	0.574691	5_1:+57477139	None:intergenic
AAGGAAGTAATATCAAGCAA+AGG	0.598298	5_1:-57477713	Msa0739330:CDS
AAGGATGATTCCTCCGGCAT+CGG	0.565016	5_1:+57477226	None:intergenic
AAGGATGCTTGTGAGAATTG+GGG	0.513241	5_1:-57477947	Msa0739330:CDS
AATGAAAATAATAATAATTA+GGG	0.352059	5_1:-57475399	Msa0739330:three_prime_UTR
AATGTGTCCATAAGGTCATG+GGG	0.688791	5_1:+57477785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCTCCAAGCTAATAATT+GGG	+	chr5_1:57475131-57475150	None:intergenic	30.0%
AGTTTCTCCAAGCTAATAAT+TGG	+	chr5_1:57475132-57475151	None:intergenic	30.0%
AAGGAAGTAATATCAAGCAA+AGG	-	chr5_1:57475423-57475442	Msa0739330:three_prime_UTR	30.0%
GATGTGTTATGTGAGAATAT+TGG	-	chr5_1:57475765-57475784	Msa0739330:intron	30.0%
AGAGAAAGGTTACCTTAAAA+AGG	-	chr5_1:57475791-57475810	Msa0739330:intron	30.0%
GAAACAAATTTACCTCAAGT+TGG	+	chr5_1:57476037-57476056	None:intergenic	30.0%
TTTGATGAATTGAGATCAGA+CGG	+	chr5_1:57476364-57476383	None:intergenic	30.0%
TCTCAATTCATCAAAATACG+TGG	-	chr5_1:57476369-57476388	Msa0739330:intron	30.0%
CTTATGTCAAATCTTGTGTA+TGG	+	chr5_1:57476423-57476442	None:intergenic	30.0%
AAGCCACAATTGAAATGTAA+CGG	+	chr5_1:57476630-57476649	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	57475046	57478112	57475046	ID=Msa0739330;Name=Msa0739330
chr5_1	mRNA	57475046	57478112	57475046	ID=Msa0739330-mRNA-1;Parent=Msa0739330;Name=Msa0739330-mRNA-1;_AED=0.26;_eAED=0.26;_QI=68\|1\|1\|1\|1\|1\|4\|427\|318
chr5_1	exon	57475046	57475760	57475046	ID=Msa0739330-mRNA-1:exon:16332;Parent=Msa0739330-mRNA-1
chr5_1	exon	57477115	57477448	57477115	ID=Msa0739330-mRNA-1:exon:16331;Parent=Msa0739330-mRNA-1
chr5_1	exon	57477599	57477825	57477599	ID=Msa0739330-mRNA-1:exon:16330;Parent=Msa0739330-mRNA-1
chr5_1	exon	57477937	57478112	57477937	ID=Msa0739330-mRNA-1:exon:16329;Parent=Msa0739330-mRNA-1
chr5_1	five_prime_UTR	57478045	57478112	57478045	ID=Msa0739330-mRNA-1:five_prime_utr;Parent=Msa0739330-mRNA-1
chr5_1	CDS	57477937	57478044	57477937	ID=Msa0739330-mRNA-1:cds;Parent=Msa0739330-mRNA-1
chr5_1	CDS	57477599	57477825	57477599	ID=Msa0739330-mRNA-1:cds;Parent=Msa0739330-mRNA-1
chr5_1	CDS	57477115	57477448	57477115	ID=Msa0739330-mRNA-1:cds;Parent=Msa0739330-mRNA-1
chr5_1	CDS	57475473	57475760	57475473	ID=Msa0739330-mRNA-1:cds;Parent=Msa0739330-mRNA-1
chr5_1	three_prime_UTR	57475046	57475472	57475046	ID=Msa0739330-mRNA-1:three_prime_utr;Parent=Msa0739330-mRNA-1

Gene Sequence

>Msa0739330

ATGATGATGAACTTCCCAATTATTAGCTTGGAGAAACTCAATGGTGTTGAGAGAAAAGACACCATGGGGAAAATTAAGGATGCTTGTGAGAATTGGGGATTCTTTGAGCTGGTGAATCATGGTATACCCCATGACCTTATGGACACATTGGAGAGGTTGACCAAAGAGCACTATAGGAAATGCATGGAGCATAGGTTTAAGGAAGTAATATCAAGCAAAGGCTTAGATGCTGTCCAAACTGAGGTCAAAGATATGGATTGGGAAAGCACCTTCCATGTTCGTCACCTCCCTGAATCAAACATTTCAGAGATACCTGATCTTAGTGATGAATACAGGAAGGTGATGAAGGAATTTTCTTTGAGGTTAGAGAAACTAGCAGAAGAGCTTTTGGATGTGTTATGTGAGAATATTGGACTAGAGAAAGGTTACCTTAAAAAGGCATTTTATGGATCAAGAGGACCAACTTTTGGCACCAAGGTAGCCAACTACCCTCAATGCCCAAATCCAGAGCTGGTGAAGGGTCTTCGTGCTCACACCGATGCCGGAGGAATCATCCTTCTCTTCCAGGATGATAAGGTCAGTGGCCTACAATTGCTCAAAGATGGCCAGTGGATTGATGTTCCCCCAATGCGCCACTCTATTGTTGTCAACCTTGGTGACCAACTTGAGGTAATAACAAATGGCAAGTACAAGAGTGTGGAACACCGTGTGATAGCACAAACAAATGGAACAAGAATGTCCATAGCGTCATTCTACAACCCTGGCAGTGATGCTGTAATCTACCCTGCGCCAGAATTGTTGGAAAAACATGCAGAGGAAAAACACAATGTGTACCCAAAATTTGTGTTTGAAGAGTACATGAAGATCTATGCTGCTTTGAAATTCCATGCTAAGGAACCAAGATTTGAAGCCCTGAAAGAATCAAATGTTAATTTGGGTCCAATTGCAATTGTTTAA

Protein sequence

>Msa0739330

MMMNFPIISLEKLNGVERKDTMGKIKDACENWGFFELVNHGIPHDLMDTLERLTKEHYRKCMEHRFKEVISSKGLDAVQTEVKDMDWESTFHVRHLPESNISEIPDLSDEYRKVMKEFSLRLEKLAEELLDVLCENIGLEKGYLKKAFYGSRGPTFGTKVANYPQCPNPELVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVEHRVIAQTNGTRMSIASFYNPGSDAVIYPAPELLEKHAEEKHNVYPKFVFEEYMKIYAALKFHAKEPRFEALKESNVNLGPIAIV*