AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0913120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913120 MtrunA17_Chr6g0466681 96.232 345 13 0 1 345 1 345 0.0 693
Msa0913120 MtrunA17_Chr6g0470321 31.801 261 161 7 66 310 37 296 1.30e-29 115
Msa0913120 MtrunA17_Chr6g0470501 29.615 260 168 6 66 310 56 315 1.43e-27 110
Msa0913120 MtrunA17_Chr4g0058731 28.302 318 192 10 24 314 1 309 2.88e-26 107
Msa0913120 MtrunA17_Chr1g0202931 29.730 296 178 9 43 316 4 291 4.50e-26 105
Msa0913120 MtrunA17_Chr1g0202871 28.244 262 166 5 66 310 29 285 1.25e-25 104
Msa0913120 MtrunA17_Chr8g0388831 28.929 280 180 8 52 313 19 297 1.31e-24 102
Msa0913120 MtrunA17_Chr1g0202891 28.516 256 169 6 66 308 29 283 1.80e-23 99.0
Msa0913120 MtrunA17_Chr8g0386971 28.185 259 172 6 69 314 32 289 2.22e-23 98.6
Msa0913120 MtrunA17_Chr1g0182541 27.562 283 186 7 70 333 38 320 3.35e-22 95.5
Msa0913120 MtrunA17_Chr7g0262941 26.923 260 171 5 70 313 38 294 7.27e-22 94.4
Msa0913120 MtrunA17_Chr1g0202861 28.295 258 171 6 66 310 70 326 5.34e-20 89.7
Msa0913120 MtrunA17_Chr3g0117241 33.621 116 77 0 66 181 37 152 1.46e-16 75.9
Msa0913120 MtrunA17_Chr6g0481311 28.704 216 138 8 69 271 64 276 1.23e-12 68.2
Msa0913120 MtrunA17_Chr2g0317921 24.911 281 167 9 57 298 78 353 1.66e-12 67.8
Msa0913120 MtrunA17_Chr8g0349751 25.228 329 179 12 35 309 27 342 3.77e-12 66.6
Msa0913120 MtrunA17_Chr8g0355281 35.484 93 60 0 62 154 67 159 5.99e-12 65.9
Msa0913120 MtrunA17_Chr3g0112151 31.395 172 93 6 64 215 86 252 8.53e-12 65.5
Msa0913120 MtrunA17_Chr3g0112171 28.708 209 125 6 64 266 15 205 8.01e-11 62.0
Msa0913120 MtrunA17_Chr7g0239451 27.907 172 110 5 66 231 18 181 8.48e-11 62.0
Msa0913120 MtrunA17_Chr8g0349671 25.773 291 169 9 69 315 9 296 9.07e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913120 AT4G09750.1 76.947 321 74 0 24 344 1 321 0.0 536
Msa0913120 AT5G50130.1 31.439 264 155 9 70 313 40 297 2.68e-29 115
Msa0913120 AT5G50130.7 31.179 263 155 9 71 313 8 264 1.31e-28 113
Msa0913120 AT5G50130.8 31.061 264 153 10 71 313 8 263 1.75e-27 110
Msa0913120 AT4G11410.1 29.572 257 169 5 66 310 29 285 4.84e-26 106
Msa0913120 AT4G24050.1 29.153 295 186 9 52 326 19 310 7.89e-26 105
Msa0913120 AT5G50130.4 31.250 224 132 7 70 277 40 257 3.32e-25 104
Msa0913120 AT5G50130.3 30.263 228 135 7 70 282 40 258 4.16e-25 102
Msa0913120 AT5G50130.5 31.330 233 135 8 71 284 8 234 1.32e-24 102
Msa0913120 AT5G50130.2 31.111 225 130 8 70 277 40 256 4.26e-24 101
Msa0913120 AT5G50130.9 30.131 229 133 8 70 282 40 257 6.10e-24 99.4
Msa0913120 AT4G23420.1 29.278 263 163 7 66 310 29 286 1.23e-23 99.8
Msa0913120 AT4G23420.2 29.278 263 163 7 66 310 29 286 1.23e-23 99.8
Msa0913120 AT4G23420.3 29.278 263 163 7 66 310 46 303 1.49e-23 99.8
Msa0913120 AT5G50130.6 31.197 234 133 9 71 284 8 233 2.01e-23 98.6
Msa0913120 AT4G11410.2 29.557 203 134 3 66 259 29 231 3.33e-23 97.4
Msa0913120 AT4G23430.2 27.586 261 170 5 66 310 29 286 3.80e-23 98.6
Msa0913120 AT4G24050.2 29.464 224 146 5 52 263 19 242 4.92e-22 94.4
Msa0913120 AT4G23430.1 27.027 259 172 5 66 310 29 284 1.11e-21 94.4
Msa0913120 AT4G23420.4 30.542 203 132 4 66 259 29 231 1.99e-20 89.7
Msa0913120 AT4G23420.5 30.542 203 132 4 66 259 29 231 3.02e-20 89.4
Msa0913120 AT2G37540.1 28.767 292 174 9 69 341 36 312 4.14e-20 90.1
Msa0913120 AT1G64590.1 26.515 264 171 6 70 314 38 297 4.72e-20 90.1
Msa0913120 AT4G23430.4 27.237 257 166 5 66 310 29 276 5.09e-20 89.7
Msa0913120 AT4G23430.3 26.667 255 168 5 66 310 29 274 1.58e-18 85.1
Msa0913120 AT5G02540.1 27.106 273 174 7 83 333 50 319 3.64e-18 84.7
Msa0913120 AT2G37540.2 38.462 130 75 3 69 197 36 161 4.68e-17 80.5
Msa0913120 AT3G59710.2 27.341 267 160 10 70 309 51 310 1.11e-16 80.1
Msa0913120 AT3G59710.3 27.341 267 160 10 70 309 22 281 1.32e-16 79.3
Msa0913120 AT3G59710.1 27.715 267 159 11 70 309 32 291 2.14e-16 79.0
Msa0913120 AT5G61830.1 26.829 287 156 8 69 313 39 313 2.46e-15 76.3
Msa0913120 AT5G61830.2 26.829 287 156 8 69 313 39 313 2.46e-15 76.3
Msa0913120 AT5G15940.1 27.758 281 145 10 69 309 62 324 6.25e-14 72.4
Msa0913120 AT5G15940.3 26.909 275 155 8 69 309 63 325 6.46e-14 72.4
Msa0913120 AT5G15940.2 26.909 275 155 8 69 309 63 325 6.46e-14 72.4
Msa0913120 AT5G04070.1 26.182 275 157 7 69 309 61 323 9.68e-13 68.9
Msa0913120 AT4G27760.1 28.251 223 138 8 30 239 25 238 3.24e-12 67.4
Msa0913120 AT5G15940.4 26.866 268 140 9 69 296 63 314 1.16e-11 65.5
Msa0913120 AT5G53090.1 25.869 259 170 7 69 317 59 305 2.10e-11 65.1
Msa0913120 AT2G29340.3 28.846 208 122 8 64 264 7 195 9.71e-11 61.2
Msa0913120 AT2G29340.4 28.846 208 122 8 64 264 7 195 9.71e-11 61.2

Find 89 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATAACTGTCACTAATTT+TGG 0.108331 6_2:+23284937 None:intergenic
TTAGGAAAATGTACACTTTA+TGG 0.125600 6_2:+23284889 None:intergenic
CATCTCTTTCGGCTTAAATA+TGG 0.205800 6_2:-23285137 Msa0913120:exon
ATCAAAAGATTCAAATAGTA+TGG 0.218344 6_2:-23285040 Msa0913120:three_prime_UTR
AGGTTGCACTAACGGAAAAT+TGG 0.236567 6_2:-23285715 Msa0913120:CDS
ACTTATTCATATACGGCTTT+AGG 0.237982 6_2:+23284871 None:intergenic
TATTCTGAGAGCAGCTTTAA+TGG 0.245875 6_2:-23286445 Msa0913120:CDS
CGTATATGAATAAGTTTCTA+TGG 0.284185 6_2:-23284863 Msa0913120:three_prime_UTR
CATAGAAACTTATTCATATA+CGG 0.284641 6_2:+23284864 None:intergenic
GTAATCATAGAACCTGTTTC+AGG 0.297564 6_2:-23284973 Msa0913120:three_prime_UTR
AGTGAGAGATACAATGTTAA+AGG 0.301217 6_2:+23290716 None:intergenic
CACAGTTACCTGTAGATCTT+TGG 0.313255 6_2:+23286537 None:intergenic
ATATCAAGTCACTGGCTTCC+AGG 0.317618 6_2:-23287509 Msa0913120:CDS
TCAATCCTTTGCATCTCTTT+CGG 0.321659 6_2:-23285148 Msa0913120:CDS
TCTCAAATTCAGACTAAAAC+TGG 0.322617 6_2:-23288003 Msa0913120:CDS
CGTGTCATCACAGTTTCTTC+TGG 0.349948 6_2:-23286583 Msa0913120:CDS
TGGCAATCAAAATGTGTATC+TGG 0.352513 6_2:-23287983 Msa0913120:CDS
CTATCTAGTATGTCGTAATA+AGG 0.352998 6_2:-23288046 Msa0913120:CDS
ACATGGAGACAAACTGCTTT+TGG 0.355048 6_2:-23290589 Msa0913120:CDS
CCAGATACCAACTTCTCCTT+TGG 0.367870 6_2:+23285267 None:intergenic
TTACGCCATGACTGAATTGA+TGG 0.373220 6_2:-23286638 Msa0913120:CDS
TGCTCGAAACAAGCGTGTTC+AGG 0.379609 6_2:-23286410 Msa0913120:intron
GGTTGCACTAACGGAAAATT+GGG 0.386737 6_2:-23285714 Msa0913120:CDS
CCAAAGGAGAAGTTGGTATC+TGG 0.391733 6_2:-23285267 Msa0913120:CDS
CTTATTAATTACAGGTTAGC+AGG 0.396215 6_2:-23285345 Msa0913120:intron
TGCATCAAGGTTAACAATGC+TGG 0.401264 6_2:-23287062 Msa0913120:intron
TGAATTGATGGTACCGTTGC+TGG 0.402134 6_2:-23286626 Msa0913120:CDS
AAGGCGCAGACACAGTTATC+TGG 0.409105 6_2:-23285302 Msa0913120:CDS
GGGAAGAATTGCATTGTAAC+AGG 0.410191 6_2:-23288219 Msa0913120:CDS
ATTTGTGTTTCTGTTTCCTC+TGG 0.412827 6_2:+23288246 None:intergenic
CCAGGTTGGGCTGACACTCC+TGG 0.413309 6_2:-23285647 Msa0913120:CDS
ACAGGAGCAAACTCTGGAAT+TGG 0.413799 6_2:-23288201 Msa0913120:CDS
ATTCTGAGAGCAGCTTTAAT+GGG 0.419800 6_2:-23286444 Msa0913120:CDS
TTACTCGATGCATCCAGGTT+GGG 0.430651 6_2:-23285660 Msa0913120:CDS
ACTGTGATGACACGTGCATC+AGG 0.434764 6_2:+23286592 None:intergenic
TAATTTACCAACACGTGCAC+TGG 0.441948 6_2:+23287468 None:intergenic
TCTCACTATGTTTCTTGTCA+AGG 0.460127 6_2:-23290700 Msa0913120:intron
AATGCTACATTACCTGAAAC+AGG 0.460910 6_2:+23284961 None:intergenic
GAGTATACTTCTACGCTAAA+CGG 0.462066 6_2:-23285115 Msa0913120:three_prime_UTR
CTTTGTAGTTCAGTTTGAAT+CGG 0.466239 6_2:-23285085 Msa0913120:three_prime_UTR
CTTGTTTCGAGCATATTGTA+AGG 0.469849 6_2:+23286420 None:intergenic
GCATTAAATGAAAGGTGCTT+AGG 0.487345 6_2:+23285216 None:intergenic
TCCCTTGACCAAAGATCTAC+AGG 0.490363 6_2:-23286545 Msa0913120:intron
GAGAAACATACAAGAACAAA+GGG 0.494631 6_2:-23285691 Msa0913120:CDS
AAGCTTAGAACAAGCGATGA+AGG 0.501592 6_2:-23285321 Msa0913120:CDS
TTTACTCGATGCATCCAGGT+TGG 0.504519 6_2:-23285661 Msa0913120:CDS
GTTACAATGCAATTCTTCCC+TGG 0.509486 6_2:+23288222 None:intergenic
TACTTCTACGCTAAACGGTA+GGG 0.513110 6_2:-23285110 Msa0913120:three_prime_UTR
CAAATAACATACAGAAAAGC+AGG 0.522471 6_2:+23290538 None:intergenic
AATTGGTTATGCGGCAGCCG+AGG 0.526551 6_2:-23288184 Msa0913120:CDS
CCAGGAGTGTCAGCCCAACC+TGG 0.529866 6_2:+23285647 None:intergenic
GAAATGCCAGGTTGCACTAA+CGG 0.529915 6_2:-23285723 Msa0913120:intron
AATCGAGTTACTACATCAGA+AGG 0.531699 6_2:-23287026 Msa0913120:CDS
ATTGGTTATGCGGCAGCCGA+GGG 0.531732 6_2:-23288183 Msa0913120:CDS
GTCATCACAGTTTCTTCTGG+TGG 0.534610 6_2:-23286580 Msa0913120:CDS
TCAAAAGATTCAAATAGTAT+GGG 0.538082 6_2:-23285039 Msa0913120:three_prime_UTR
ACCTGTAGATCTTTGGTCAA+GGG 0.546962 6_2:+23286544 None:intergenic
CTTTCATTTAATGCTACAAG+TGG 0.548445 6_2:-23285207 Msa0913120:CDS
ACTACAACCAAAGGAGAAGT+TGG 0.556290 6_2:-23285274 Msa0913120:CDS
TTCTAAGAATTTCAAACCAG+AGG 0.557905 6_2:-23288262 Msa0913120:CDS
TTAAGCCGAAAGAGATGCAA+AGG 0.568116 6_2:+23285143 None:intergenic
TACCTGTAGATCTTTGGTCA+AGG 0.568894 6_2:+23286543 None:intergenic
GAAACAGAAACACAAATACC+AGG 0.569965 6_2:-23288240 Msa0913120:CDS
ATACTTCTACGCTAAACGGT+AGG 0.573420 6_2:-23285111 Msa0913120:three_prime_UTR
CGCAGACACAGTTATCTGGT+TGG 0.576863 6_2:-23285298 Msa0913120:CDS
CACTTGTAGCATTAAATGAA+AGG 0.577862 6_2:+23285208 None:intergenic
ATTGTAACAGGAGCAAACTC+TGG 0.588444 6_2:-23288207 Msa0913120:CDS
TTGTGATCTGTCATCTGTCA+CGG 0.588486 6_2:-23287532 Msa0913120:CDS
ACATACAAGAACAAAGGGAT+AGG 0.589492 6_2:-23285686 Msa0913120:CDS
GGAGAAACATACAAGAACAA+AGG 0.596140 6_2:-23285692 Msa0913120:CDS
ACTTCTACGCTAAACGGTAG+GGG 0.598387 6_2:-23285109 Msa0913120:three_prime_UTR
CGGTACCATCAATTCAGTCA+TGG 0.602047 6_2:+23286633 None:intergenic
GTATATGAATAAGTTTCTAT+GGG 0.603166 6_2:-23284862 Msa0913120:three_prime_UTR
TGTCACGGATATCAAGTCAC+TGG 0.604843 6_2:-23287517 Msa0913120:CDS
TGTGATGACACGTGCATCAG+GGG 0.607622 6_2:+23286594 None:intergenic
AAACCGCTGTGCAAGACCCT+CGG 0.611055 6_2:+23288167 None:intergenic
TTATTAATTACAGGTTAGCA+GGG 0.613550 6_2:-23285344 Msa0913120:intron
CTGGTTGGCACTACAACCAA+AGG 0.614640 6_2:-23285283 Msa0913120:CDS
GGGGAAGCTTTCTCCAGCAA+CGG 0.614707 6_2:+23286613 None:intergenic
CTGTGATGACACGTGCATCA+GGG 0.619232 6_2:+23286593 None:intergenic
GAATGTTCCAGTGCACGTGT+TGG 0.626224 6_2:-23287475 Msa0913120:intron
TCGTAATAAGGAGAGAGGAG+AGG 0.632019 6_2:-23288034 Msa0913120:CDS
GTATGTCGTAATAAGGAGAG+AGG 0.632214 6_2:-23288039 Msa0913120:CDS
AAACAGAAACACAAATACCA+GGG 0.633281 6_2:-23288239 Msa0913120:CDS
CAATCAAAATGTGTATCTGG+AGG 0.636392 6_2:-23287980 Msa0913120:intron
ATCGAGTTACTACATCAGAA+GGG 0.664466 6_2:-23287025 Msa0913120:intron
CAGCCGAGGGTCTTGCACAG+CGG 0.674108 6_2:-23288170 Msa0913120:intron
AAACTCTGGAATTGGTTATG+CGG 0.681764 6_2:-23288193 Msa0913120:CDS
GTTGCACTAACGGAAAATTG+GGG 0.736562 6_2:-23285713 Msa0913120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTGTTATTGTTATT+AGG - chr6_2:23285365-23285384 Msa0913120:intron 10.0%
!! ATGATAATAATTATTGTTAT+TGG - chr6_2:23286039-23286058 Msa0913120:intron 10.0%
!!! AAGATAAAATTTTATACATA+AGG + chr6_2:23287371-23287390 None:intergenic 10.0%
!!! AGTTTTTATATTAAACTTAT+CGG + chr6_2:23288428-23288447 None:intergenic 10.0%
!! AAGTTTAATATAAAAACTTA+CGG - chr6_2:23288430-23288449 Msa0913120:intron 10.0%
!! TCTTAAAAGATATATAATGA+TGG - chr6_2:23285332-23285351 Msa0913120:CDS 15.0%
!! ATTATGCAATAAATATATAG+AGG - chr6_2:23286332-23286351 Msa0913120:intron 15.0%
!!! TATTAAAACAATTTGACTTT+AGG - chr6_2:23287896-23287915 Msa0913120:intron 15.0%
!! AGTTTAATATAAAAACTTAC+GGG - chr6_2:23288431-23288450 Msa0913120:intron 15.0%
!!! AGATTTTCAAAAGAATAAAT+TGG + chr6_2:23288566-23288585 None:intergenic 15.0%
!!! ATTTTATGTTCCGTTTTTTA+TGG + chr6_2:23284885-23284904 None:intergenic 20.0%
!! GAACATAAAATGAAAAAAAG+TGG - chr6_2:23284894-23284913 Msa0913120:three_prime_UTR 20.0%
!!! TTGTTTTTTCTTTTTCCATT+TGG - chr6_2:23285147-23285166 Msa0913120:CDS 20.0%
!! TCCTATTTATAAGAGATATT+TGG - chr6_2:23285199-23285218 Msa0913120:CDS 20.0%
!! CCTATTTATAAGAGATATTT+GGG - chr6_2:23285200-23285219 Msa0913120:CDS 20.0%
!!! ATAAAATTTGTTTTACCAAC+TGG - chr6_2:23285488-23285507 Msa0913120:intron 20.0%
!!! ATTTATATCTAGCTTTTTGT+TGG - chr6_2:23285648-23285667 Msa0913120:CDS 20.0%
!!! TTTATATCTAGCTTTTTGTT+GGG - chr6_2:23285649-23285668 Msa0913120:CDS 20.0%
!!! CTTTTAGACATTAAGTATAT+GGG + chr6_2:23285744-23285763 None:intergenic 20.0%
!!! ACTTTTAGACATTAAGTATA+TGG + chr6_2:23285745-23285764 None:intergenic 20.0%
!!! ACTTAATGTCTAAAAGTTTT+CGG - chr6_2:23285748-23285767 Msa0913120:intron 20.0%
!! TTCATATAATTCCTAGAATT+TGG + chr6_2:23286787-23286806 None:intergenic 20.0%
!!! ATTTTGTTTGTTTGTTTGAT+TGG - chr6_2:23287130-23287149 Msa0913120:intron 20.0%
!! AAAAGCTTATAAGATTGAAT+TGG - chr6_2:23287235-23287254 Msa0913120:intron 20.0%
!!! TAAAATGTCTAATATGCTTT+TGG + chr6_2:23288003-23288022 None:intergenic 20.0%
!!! TTTTCACAATTTTGTTGATT+TGG - chr6_2:23288056-23288075 Msa0913120:CDS 20.0%
!!! GTTCTTTTCTTGAAATAAAA+TGG + chr6_2:23288489-23288508 None:intergenic 20.0%
!!! TTTTCAAATAGAAACTATTG+AGG + chr6_2:23288807-23288826 None:intergenic 20.0%
!!! GTAATGATATTTTAGATTCA+AGG - chr6_2:23289299-23289318 Msa0913120:intron 20.0%
!! TTGTATTGTTGAACAATTAA+CGG - chr6_2:23289487-23289506 Msa0913120:intron 20.0%
!!! CTTGATATTTTATCACTATT+CGG + chr6_2:23289625-23289644 None:intergenic 20.0%
!! ATAAGGTCAGTATATTAATT+AGG + chr6_2:23290305-23290324 None:intergenic 20.0%
!!! TACTATTTGAATCTTTTGAT+TGG + chr6_2:23290625-23290644 None:intergenic 20.0%
!! ATCAAAAGATTCAAATAGTA+TGG - chr6_2:23290625-23290644 Msa0913120:intron 20.0%
!! TCAAAAGATTCAAATAGTAT+GGG - chr6_2:23290626-23290645 Msa0913120:intron 20.0%
!!! ACAGTTATATCAATTGTTTT+CGG - chr6_2:23290740-23290759 Msa0913120:CDS 20.0%
!! CATAGAAACTTATTCATATA+CGG + chr6_2:23290804-23290823 None:intergenic 20.0%
! ACTGAAATGTGAAATTGTTA+AGG + chr6_2:23285011-23285030 None:intergenic 25.0%
!! GTAAAATAGTTGATTCCAAA+TGG + chr6_2:23285165-23285184 None:intergenic 25.0%
! ATATCTCTTATAAATAGGAC+CGG + chr6_2:23285198-23285217 None:intergenic 25.0%
! CCCAAATATCTCTTATAAAT+AGG + chr6_2:23285203-23285222 None:intergenic 25.0%
!! TGTGGTTTAAAATAGTAATG+CGG + chr6_2:23285227-23285246 None:intergenic 25.0%
! CCAAATTATAAGAGACATTT+CGG + chr6_2:23285290-23285309 None:intergenic 25.0%
! ATCATAGAATTTCTTAAGTC+AGG - chr6_2:23285394-23285413 Msa0913120:intron 25.0%
! TAGAGCACAAATATCAATTT+AGG - chr6_2:23285443-23285462 Msa0913120:intron 25.0%
!! AGTTTAGTGTTGGATATATA+AGG - chr6_2:23285711-23285730 Msa0913120:CDS 25.0%
!! GTTTAGTGTTGGATATATAA+GGG - chr6_2:23285712-23285731 Msa0913120:CDS 25.0%
! ACATGTAGTGATTAAATAGT+GGG - chr6_2:23285865-23285884 Msa0913120:intron 25.0%
! CTGCTATATTATATTGTTCA+TGG - chr6_2:23286000-23286019 Msa0913120:intron 25.0%
! CAAAAATAGTTGCTATAAGT+TGG - chr6_2:23286092-23286111 Msa0913120:intron 25.0%
! CTTAAATCCAAGTTATAAGA+CGG - chr6_2:23286154-23286173 Msa0913120:intron 25.0%
! TGAGACTTATATAAGTTTGA+AGG - chr6_2:23286531-23286550 Msa0913120:intron 25.0%
! TTATATAAGTTTGAAGGATG+TGG - chr6_2:23286537-23286556 Msa0913120:intron 25.0%
! TTATATGAACTGAGTTATAG+TGG - chr6_2:23286798-23286817 Msa0913120:intron 25.0%
!! AAAGAAAAGGGAATGAATTT+TGG + chr6_2:23286886-23286905 None:intergenic 25.0%
!! TTTTAGACACTCAAAGAAAA+GGG + chr6_2:23286898-23286917 None:intergenic 25.0%
!! ATTTTAGACACTCAAAGAAA+AGG + chr6_2:23286899-23286918 None:intergenic 25.0%
! CACACACATTGTATTTATAA+TGG - chr6_2:23286960-23286979 Msa0913120:intron 25.0%
! AGAAGTAATAACAATCAATC+TGG - chr6_2:23287045-23287064 Msa0913120:CDS 25.0%
! GAAGTAATAACAATCAATCT+GGG - chr6_2:23287046-23287065 Msa0913120:CDS 25.0%
! AAAAGAAGAATGTAGAAAAG+TGG - chr6_2:23287329-23287348 Msa0913120:intron 25.0%
! AAAATTCCAGAAACAAACAT+CGG + chr6_2:23287535-23287554 None:intergenic 25.0%
! TCAACAGATAAGCTAAAATA+AGG + chr6_2:23287753-23287772 None:intergenic 25.0%
! TAACTGATGAAAACAATTCA+TGG - chr6_2:23287869-23287888 Msa0913120:intron 25.0%
! TGAAACAATTTATTGCATCA+AGG - chr6_2:23288590-23288609 Msa0913120:intron 25.0%
! TGAGAACACTTATTATAAGA+CGG + chr6_2:23288735-23288754 None:intergenic 25.0%
!! AAGTTTATCTATTCTTTTCC+AGG - chr6_2:23288969-23288988 Msa0913120:intron 25.0%
!!! AATTTTGCTGTCAATGTATT+AGG - chr6_2:23289001-23289020 Msa0913120:intron 25.0%
! CACATGTTATATATACTTGT+TGG + chr6_2:23289601-23289620 None:intergenic 25.0%
!! TTTGATATATTTGAAATGCC+AGG - chr6_2:23289930-23289949 Msa0913120:intron 25.0%
! ATACTGACCTTATTAATTAC+AGG - chr6_2:23290312-23290331 Msa0913120:intron 25.0%
! TTATTAATTACAGGTTAGCA+GGG - chr6_2:23290321-23290340 Msa0913120:intron 25.0%
!! GATATAACTGTCACTAATTT+TGG + chr6_2:23290731-23290750 None:intergenic 25.0%
! TTAGGAAAATGTACACTTTA+TGG + chr6_2:23290779-23290798 None:intergenic 25.0%
! CGTATATGAATAAGTTTCTA+TGG - chr6_2:23290802-23290821 Msa0913120:five_prime_UTR 25.0%
AGTGAGAGATACAATGTTAA+AGG + chr6_2:23284952-23284971 None:intergenic 30.0%
CAAATAACATACAGAAAAGC+AGG + chr6_2:23285130-23285149 None:intergenic 30.0%
!! TCAACAAAAGTTGATGTATG+TGG + chr6_2:23285245-23285264 None:intergenic 30.0%
CCGAAATGTCTCTTATAATT+TGG - chr6_2:23285287-23285306 Msa0913120:CDS 30.0%
ATGTCTCTTATAATTTGGAC+CGG - chr6_2:23285292-23285311 Msa0913120:CDS 30.0%
!! AATTCGAACATTGATTCATC+AGG + chr6_2:23285549-23285568 None:intergenic 30.0%
AACACTAAACTCATTCATAG+TGG + chr6_2:23285702-23285721 None:intergenic 30.0%
ACTATGAATGAGTTTAGTGT+TGG - chr6_2:23285701-23285720 Msa0913120:CDS 30.0%
GACATGTAGTGATTAAATAG+TGG - chr6_2:23285864-23285883 Msa0913120:intron 30.0%
GTTGACTAATGATATGTGAT+AGG - chr6_2:23286068-23286087 Msa0913120:intron 30.0%
!! AACTCTCATTGACTAACTTT+TGG - chr6_2:23286119-23286138 Msa0913120:intron 30.0%
!! ACTCTCATTGACTAACTTTT+GGG - chr6_2:23286120-23286139 Msa0913120:intron 30.0%
GTAGGTATGAAGATGTTTAT+TGG - chr6_2:23286273-23286292 Msa0913120:intron 30.0%
!!! TCTATGTTTGTTTTGAACAC+TGG + chr6_2:23286313-23286332 None:intergenic 30.0%
TATAGAGGATCTTACAATGT+TGG - chr6_2:23286347-23286366 Msa0913120:intron 30.0%
TCAAGTCAGTATAATGATTG+AGG - chr6_2:23286463-23286482 Msa0913120:intron 30.0%
ATATCATCATCAATCAAGGT+AGG + chr6_2:23286512-23286531 None:intergenic 30.0%
TCTCATATCATCATCAATCA+AGG + chr6_2:23286516-23286535 None:intergenic 30.0%
TAACTACTTCACCATATTAC+TGG + chr6_2:23286603-23286622 None:intergenic 30.0%
AGTAATATGGTGAAGTAGTT+AGG - chr6_2:23286602-23286621 Msa0913120:CDS 30.0%
TAAGCTGAAATCCAAATTCT+AGG - chr6_2:23286773-23286792 Msa0913120:intron 30.0%
AGATAAGCATCAAGAATTTG+AGG + chr6_2:23286826-23286845 None:intergenic 30.0%
CTTATCTTAGAACACAACAT+TGG - chr6_2:23286839-23286858 Msa0913120:intron 30.0%
! AAAGGGAATGAATTTTGGAT+TGG + chr6_2:23286881-23286900 None:intergenic 30.0%
! TTCTAAGAATTTCAAACCAG+AGG - chr6_2:23287403-23287422 Msa0913120:intron 30.0%
AAACAGAAACACAAATACCA+GGG - chr6_2:23287426-23287445 Msa0913120:intron 30.0%
AGAAACAAACATCGGAAAAA+AGG + chr6_2:23287527-23287546 None:intergenic 30.0%
!!! TTTTTTCCGATGTTTGTTTC+TGG - chr6_2:23287526-23287545 Msa0913120:CDS 30.0%
TGTAGTTATATGCTAATCTG+TGG - chr6_2:23287567-23287586 Msa0913120:intron 30.0%
CTATCTAGTATGTCGTAATA+AGG - chr6_2:23287619-23287638 Msa0913120:intron 30.0%
TCTCAAATTCAGACTAAAAC+TGG - chr6_2:23287662-23287681 Msa0913120:intron 30.0%
TAAAATAAGGCAGTTCAAAC+AGG + chr6_2:23287740-23287759 None:intergenic 30.0%
TTATCTGTTGACATAATCAC+TGG - chr6_2:23287762-23287781 Msa0913120:intron 30.0%
!!! AACATTCTTTTTCGAAAACC+TGG + chr6_2:23288177-23288196 None:intergenic 30.0%
ATGAAACACTAATACAGACA+CGG - chr6_2:23288248-23288267 Msa0913120:CDS 30.0%
! GTATTCGGTCATTTCATTTT+TGG + chr6_2:23288309-23288328 None:intergenic 30.0%
! GGAATTTTGTGTATTGCTTA+TGG - chr6_2:23288452-23288471 Msa0913120:intron 30.0%
TCAAATAGAAACTATTGAGG+CGG + chr6_2:23288804-23288823 None:intergenic 30.0%
AATCAATAGGTATGAAACAC+TGG + chr6_2:23289435-23289454 None:intergenic 30.0%
ATTCTAACAGAGCAATCAAT+AGG + chr6_2:23289448-23289467 None:intergenic 30.0%
ATTGTTCAACAATACAAGAG+AGG + chr6_2:23289484-23289503 None:intergenic 30.0%
ATATACAACCTCAAACAGTA+AGG + chr6_2:23289710-23289729 None:intergenic 30.0%
GAGAAACATACAAGAACAAA+GGG - chr6_2:23289974-23289993 Msa0913120:intron 30.0%
CAAGGATTATAGTCTCATAA+TGG + chr6_2:23290139-23290158 None:intergenic 30.0%
!!! GATGTGACTTTTGTTTTGTT+GGG - chr6_2:23290173-23290192 Msa0913120:intron 30.0%
AAGAATCTGACTTCAATTCT+TGG + chr6_2:23290225-23290244 None:intergenic 30.0%
CTGCTAACCTGTAATTAATA+AGG + chr6_2:23290322-23290341 None:intergenic 30.0%
CTTATTAATTACAGGTTAGC+AGG - chr6_2:23290320-23290339 Msa0913120:intron 30.0%
CACTTGTAGCATTAAATGAA+AGG + chr6_2:23290460-23290479 None:intergenic 30.0%
CTTTCATTTAATGCTACAAG+TGG - chr6_2:23290458-23290477 Msa0913120:intron 30.0%
CTTTGTAGTTCAGTTTGAAT+CGG - chr6_2:23290580-23290599 Msa0913120:CDS 30.0%
ACTTATTCATATACGGCTTT+AGG + chr6_2:23290797-23290816 None:intergenic 30.0%
CACACGTCAACCATAAAAAA+CGG - chr6_2:23284872-23284891 Msa0913120:three_prime_UTR 35.0%
TCTCACTATGTTTCTTGTCA+AGG - chr6_2:23284965-23284984 Msa0913120:three_prime_UTR 35.0%
TGTTTGTGTTTGAACAGACA+TGG - chr6_2:23285059-23285078 Msa0913120:three_prime_UTR 35.0%
!!! CAAACTGCTTTTGGTGTTTA+TGG - chr6_2:23285085-23285104 Msa0913120:three_prime_UTR 35.0%
! CTATTTTACTATCTCCTCTC+CGG - chr6_2:23285176-23285195 Msa0913120:CDS 35.0%
GTCAATAAAAGAGACATGTC+AGG + chr6_2:23285268-23285287 None:intergenic 35.0%
GAACTAATAAACACTCTCTC+CGG + chr6_2:23285314-23285333 None:intergenic 35.0%
!!! TTTGTTTTACCAACTGGAGT+TGG - chr6_2:23285494-23285513 Msa0913120:intron 35.0%
!! TTGTTTTACCAACTGGAGTT+GGG - chr6_2:23285495-23285514 Msa0913120:intron 35.0%
!! AACATTGATTCATCAGGTTG+TGG + chr6_2:23285543-23285562 None:intergenic 35.0%
TTTAATGTCAGGCCTAGAAT+AGG - chr6_2:23285591-23285610 Msa0913120:intron 35.0%
AGGTTCACTAATCCTATTCT+AGG + chr6_2:23285606-23285625 None:intergenic 35.0%
! GAATAGGATTAGTGAACCTA+TGG - chr6_2:23285607-23285626 Msa0913120:intron 35.0%
ATTAGTGAACCTATGGCTAT+GGG - chr6_2:23285614-23285633 Msa0913120:CDS 35.0%
!! AACTCATTCATAGTGGATGT+GGG + chr6_2:23285695-23285714 None:intergenic 35.0%
!! AAACTCATTCATAGTGGATG+TGG + chr6_2:23285696-23285715 None:intergenic 35.0%
! TAGTGTTGGATATATAAGGG+TGG - chr6_2:23285715-23285734 Msa0913120:CDS 35.0%
ATCACTACATGTCTGAAAGT+GGG + chr6_2:23285857-23285876 None:intergenic 35.0%
AATCACTACATGTCTGAAAG+TGG + chr6_2:23285858-23285877 None:intergenic 35.0%
!! CTCTCATTGACTAACTTTTG+GGG - chr6_2:23286121-23286140 Msa0913120:intron 35.0%
TCTGATACCGTCTTATAACT+TGG + chr6_2:23286164-23286183 None:intergenic 35.0%
! AACATCTGGAACATGAAGTT+TGG + chr6_2:23286248-23286267 None:intergenic 35.0%
TGTTCCAGATGTTCAATAGT+AGG - chr6_2:23286255-23286274 Msa0913120:intron 35.0%
CATACCTACTATTGAACATC+TGG + chr6_2:23286262-23286281 None:intergenic 35.0%
! CTTACAATGTTGGTAGATTG+AGG - chr6_2:23286357-23286376 Msa0913120:intron 35.0%
TTGGTAGATTGAGGAAAGAA+AGG - chr6_2:23286366-23286385 Msa0913120:intron 35.0%
AGTCAGTATAATGATTGAGG+TGG - chr6_2:23286466-23286485 Msa0913120:intron 35.0%
AAGTTTGAAGGATGTGGTAT+TGG - chr6_2:23286543-23286562 Msa0913120:intron 35.0%
AGTTTGAAGGATGTGGTATT+GGG - chr6_2:23286544-23286563 Msa0913120:intron 35.0%
AATATGGTGAAGTAGTTAGG+TGG - chr6_2:23286605-23286624 Msa0913120:CDS 35.0%
ATTTCCAACCCCAAAATATG+TGG - chr6_2:23286636-23286655 Msa0913120:CDS 35.0%
TTTCCAACCCCAAAATATGT+GGG - chr6_2:23286637-23286656 Msa0913120:CDS 35.0%
! AATCGGATTCTAAGAATGCA+TGG - chr6_2:23286715-23286734 Msa0913120:intron 35.0%
! TAATTAGTAAGCACTAGCCT+AGG - chr6_2:23287008-23287027 Msa0913120:intron 35.0%
! TCTAGAGTATAGAACTTCCT+AGG + chr6_2:23287028-23287047 None:intergenic 35.0%
! ATTTGTGTTTCTGTTTCCTC+TGG + chr6_2:23287422-23287441 None:intergenic 35.0%
GAAACAGAAACACAAATACC+AGG - chr6_2:23287425-23287444 Msa0913120:intron 35.0%
!! AAACTCTGGAATTGGTTATG+CGG - chr6_2:23287472-23287491 Msa0913120:intron 35.0%
TGGCAATCAAAATGTGTATC+TGG - chr6_2:23287682-23287701 Msa0913120:intron 35.0%
CAATCAAAATGTGTATCTGG+AGG - chr6_2:23287685-23287704 Msa0913120:intron 35.0%
! CACCGATCCTTTTCTTTTTA+GGG - chr6_2:23287714-23287733 Msa0913120:intron 35.0%
AAACAGGCCCTAAAAAGAAA+AGG + chr6_2:23287724-23287743 None:intergenic 35.0%
TAATCACTGGTGAGAATGTT+TGG - chr6_2:23287775-23287794 Msa0913120:intron 35.0%
AATCACTGGTGAGAATGTTT+GGG - chr6_2:23287776-23287795 Msa0913120:intron 35.0%
CTTATTTCCACAAACTCTCT+AGG - chr6_2:23287845-23287864 Msa0913120:intron 35.0%
!! TTGGTAGTTACAGTCTTGTT+TGG + chr6_2:23287984-23288003 None:intergenic 35.0%
! CTTCAGATTAAAAGCACATG+AGG + chr6_2:23288367-23288386 None:intergenic 35.0%
!! GTGCTTTTAATCTGAAGTGT+CGG - chr6_2:23288370-23288389 Msa0913120:intron 35.0%
GTGTATTGCTTATGGAGTTA+TGG - chr6_2:23288460-23288479 Msa0913120:intron 35.0%
AATCGAGTTACTACATCAGA+AGG - chr6_2:23288639-23288658 Msa0913120:intron 35.0%
ATCGAGTTACTACATCAGAA+GGG - chr6_2:23288640-23288659 Msa0913120:intron 35.0%
AATTTAGGCTAAAGCATAGC+GGG + chr6_2:23288878-23288897 None:intergenic 35.0%
CAATTTAGGCTAAAGCATAG+CGG + chr6_2:23288879-23288898 None:intergenic 35.0%
AGCAAAATTCAACTCAAACC+TGG + chr6_2:23288990-23289009 None:intergenic 35.0%
! TATTCTGAGAGCAGCTTTAA+TGG - chr6_2:23289220-23289239 Msa0913120:intron 35.0%
! ATTCTGAGAGCAGCTTTAAT+GGG - chr6_2:23289221-23289240 Msa0913120:intron 35.0%
CTTGTTTCGAGCATATTGTA+AGG + chr6_2:23289248-23289267 None:intergenic 35.0%
TAAACAAGCCTTACTGTTTG+AGG - chr6_2:23289699-23289718 Msa0913120:intron 35.0%
ACTTCCTACATTTGTAACTC+GGG + chr6_2:23289771-23289790 None:intergenic 35.0%
CACTTCCTACATTTGTAACT+CGG + chr6_2:23289772-23289791 None:intergenic 35.0%
ACGCAATTGAAAGATGTTAC+TGG - chr6_2:23289867-23289886 Msa0913120:intron 35.0%
GGAGAAACATACAAGAACAA+AGG - chr6_2:23289973-23289992 Msa0913120:intron 35.0%
ACATACAAGAACAAAGGGAT+AGG - chr6_2:23289979-23289998 Msa0913120:intron 35.0%
!! ATACTTTAGGGCACATATTG+AGG + chr6_2:23290092-23290111 None:intergenic 35.0%
CTAAGTTGTGGGATACTTTA+GGG + chr6_2:23290104-23290123 None:intergenic 35.0%
TCTAAGTTGTGGGATACTTT+AGG + chr6_2:23290105-23290124 None:intergenic 35.0%
!! GTCTCATAATGGACTCAAAA+GGG + chr6_2:23290128-23290147 None:intergenic 35.0%
!! AGTCTCATAATGGACTCAAA+AGG + chr6_2:23290129-23290148 None:intergenic 35.0%
TATAATCCTTGATTCCCTAG+CGG - chr6_2:23290148-23290167 Msa0913120:intron 35.0%
!!! GGATGTGACTTTTGTTTTGT+TGG - chr6_2:23290172-23290191 Msa0913120:intron 35.0%
!!! TGACTTTTGTTTTGTTGGGA+TGG - chr6_2:23290177-23290196 Msa0913120:intron 35.0%
ATTCTTGGAGTCGTGTATTT+GGG + chr6_2:23290210-23290229 None:intergenic 35.0%
AATTCTTGGAGTCGTGTATT+TGG + chr6_2:23290211-23290230 None:intergenic 35.0%
!! GCATTAAATGAAAGGTGCTT+AGG + chr6_2:23290452-23290471 None:intergenic 35.0%
TCAATCCTTTGCATCTCTTT+CGG - chr6_2:23290517-23290536 Msa0913120:intron 35.0%
CATCTCTTTCGGCTTAAATA+TGG - chr6_2:23290528-23290547 Msa0913120:intron 35.0%
GAGTATACTTCTACGCTAAA+CGG - chr6_2:23290550-23290569 Msa0913120:CDS 35.0%
!! GTATGGGTTTGCATTTTGAT+CGG - chr6_2:23290642-23290661 Msa0913120:intron 35.0%
GTAATCATAGAACCTGTTTC+AGG - chr6_2:23290692-23290711 Msa0913120:intron 35.0%
AATGCTACATTACCTGAAAC+AGG + chr6_2:23290707-23290726 None:intergenic 35.0%
! ACATGGAGACAAACTGCTTT+TGG - chr6_2:23285076-23285095 Msa0913120:three_prime_UTR 40.0%
TCTTATAAATAGGACCGGAG+AGG + chr6_2:23285193-23285212 None:intergenic 40.0%
! ATTGATTCATCAGGTTGTGG+AGG + chr6_2:23285540-23285559 None:intergenic 40.0%
TCAATGTTCGAATTTCGACC+AGG - chr6_2:23285555-23285574 Msa0913120:intron 40.0%
AGGTGACCACATTTAATGTC+AGG - chr6_2:23285580-23285599 Msa0913120:intron 40.0%
TCTAGGCCTGACATTAAATG+TGG + chr6_2:23285589-23285608 None:intergenic 40.0%
GATTAGTGAACCTATGGCTA+TGG - chr6_2:23285613-23285632 Msa0913120:intron 40.0%
! GTTTTTGTTCCCATAGCCAT+AGG + chr6_2:23285626-23285645 None:intergenic 40.0%
TTGTTGGGTTTAAGTGTGAC+CGG - chr6_2:23285664-23285683 Msa0913120:CDS 40.0%
TCTATGGGTGGACAATTAAC+AGG + chr6_2:23286214-23286233 None:intergenic 40.0%
ATTGTCCACCCATAGATGTT+CGG - chr6_2:23286218-23286237 Msa0913120:intron 40.0%
! ATCTGGAACATGAAGTTTGG+AGG + chr6_2:23286245-23286264 None:intergenic 40.0%
ATTGGACATCATCGATGTCA+TGG + chr6_2:23286412-23286431 None:intergenic 40.0%
ATGACATCGATGATGTCCAA+TGG - chr6_2:23286411-23286430 Msa0913120:CDS 40.0%
!! CATTATACTGACTTGAGCGT+TGG + chr6_2:23286459-23286478 None:intergenic 40.0%
TAATGATTGAGGTGGATGAG+AGG - chr6_2:23286474-23286493 Msa0913120:intron 40.0%
! AAGGATGTGGTATTGGGATT+CGG - chr6_2:23286550-23286569 Msa0913120:CDS 40.0%
! TATTACTGGTTGTTCCGAAG+TGG + chr6_2:23286589-23286608 None:intergenic 40.0%
CTTCGGAACAACCAGTAATA+TGG - chr6_2:23286589-23286608 Msa0913120:CDS 40.0%
! AAGTCCGACCCACATATTTT+GGG + chr6_2:23286648-23286667 None:intergenic 40.0%
! AATATCTGGAGCATGAGGTT+TGG + chr6_2:23286671-23286690 None:intergenic 40.0%
CACACATAGGACTGAATATC+TGG + chr6_2:23286685-23286704 None:intergenic 40.0%
TATTCAGTCCTATGTGTGTG+AGG - chr6_2:23286687-23286706 Msa0913120:intron 40.0%
CAGTTATCGCCATGAAACTA+GGG + chr6_2:23287274-23287293 None:intergenic 40.0%
GTTACAATGCAATTCTTCCC+TGG + chr6_2:23287446-23287465 None:intergenic 40.0%
GGGAAGAATTGCATTGTAAC+AGG - chr6_2:23287446-23287465 Msa0913120:intron 40.0%
ATTGTAACAGGAGCAAACTC+TGG - chr6_2:23287458-23287477 Msa0913120:intron 40.0%
TAGATAGACATTTGCACCAC+TGG + chr6_2:23287606-23287625 None:intergenic 40.0%
GTATGTCGTAATAAGGAGAG+AGG - chr6_2:23287626-23287645 Msa0913120:intron 40.0%
CCTAAAAAGAAAAGGATCGG+TGG + chr6_2:23287716-23287735 None:intergenic 40.0%
! CCACCGATCCTTTTCTTTTT+AGG - chr6_2:23287713-23287732 Msa0913120:intron 40.0%
GGCCCTAAAAAGAAAAGGAT+CGG + chr6_2:23287719-23287738 None:intergenic 40.0%
AGAATGTTTGGGAGAGCTTA+TGG - chr6_2:23287787-23287806 Msa0913120:intron 40.0%
CAGTTATCCTAGAGAGTTTG+TGG + chr6_2:23287855-23287874 None:intergenic 40.0%
TTGTGATCTGTCATCTGTCA+CGG - chr6_2:23288133-23288152 Msa0913120:intron 40.0%
TAATTTACCAACACGTGCAC+TGG + chr6_2:23288200-23288219 None:intergenic 40.0%
TGCATCAAGGTTAACAATGC+TGG - chr6_2:23288603-23288622 Msa0913120:intron 40.0%
CGTTTCGCGAAACACAATTT+AGG + chr6_2:23288893-23288912 None:intergenic 40.0%
!! TGATAGTGGCAAAAGCATAG+CGG + chr6_2:23288934-23288953 None:intergenic 40.0%
!! AGAGCAGTTTTGTCTGATAG+TGG + chr6_2:23288948-23288967 None:intergenic 40.0%
TTACGCCATGACTGAATTGA+TGG - chr6_2:23289027-23289046 Msa0913120:intron 40.0%
ACCTGTAGATCTTTGGTCAA+GGG + chr6_2:23289124-23289143 None:intergenic 40.0%
TACCTGTAGATCTTTGGTCA+AGG + chr6_2:23289125-23289144 None:intergenic 40.0%
CACAGTTACCTGTAGATCTT+TGG + chr6_2:23289131-23289150 None:intergenic 40.0%
TAAAGCTGCTCTCAGAATAC+TGG + chr6_2:23289219-23289238 None:intergenic 40.0%
!! ATTGACGGCATTGGTCATTA+TGG + chr6_2:23289558-23289577 None:intergenic 40.0%
GTTGACGACTTTGTCATTGA+CGG + chr6_2:23289573-23289592 None:intergenic 40.0%
ATTTGACACGACTCAAAGTG+AGG + chr6_2:23289655-23289674 None:intergenic 40.0%
TTCCTACATTTGTAACTCGG+GGG + chr6_2:23289769-23289788 None:intergenic 40.0%
CTTCCTACATTTGTAACTCG+GGG + chr6_2:23289770-23289789 None:intergenic 40.0%
CGAGTTACAAATGTAGGAAG+TGG - chr6_2:23289770-23289789 Msa0913120:intron 40.0%
GGAAGTGGTTTAAATTGTGC+AGG - chr6_2:23289785-23289804 Msa0913120:intron 40.0%
! AATTTTCCGTTAGTGCAACC+TGG + chr6_2:23289951-23289970 None:intergenic 40.0%
AGGTTGCACTAACGGAAAAT+TGG - chr6_2:23289950-23289969 Msa0913120:intron 40.0%
GGTTGCACTAACGGAAAATT+GGG - chr6_2:23289951-23289970 Msa0913120:intron 40.0%
GTTGCACTAACGGAAAATTG+GGG - chr6_2:23289952-23289971 Msa0913120:intron 40.0%
!! ACTTACGATTTTGAGAAGCC+TGG + chr6_2:23290060-23290079 None:intergenic 40.0%
CTCAAAAGGGTCTAAGTTGT+GGG + chr6_2:23290115-23290134 None:intergenic 40.0%
ACTCAAAAGGGTCTAAGTTG+TGG + chr6_2:23290116-23290135 None:intergenic 40.0%
ATAATCCTTGATTCCCTAGC+GGG - chr6_2:23290149-23290168 Msa0913120:intron 40.0%
AAGCTTAGAACAAGCGATGA+AGG - chr6_2:23290344-23290363 Msa0913120:intron 40.0%
ACTACAACCAAAGGAGAAGT+TGG - chr6_2:23290391-23290410 Msa0913120:intron 40.0%
TTAAGCCGAAAGAGATGCAA+AGG + chr6_2:23290525-23290544 None:intergenic 40.0%
ATACTTCTACGCTAAACGGT+AGG - chr6_2:23290554-23290573 Msa0913120:CDS 40.0%
TACTTCTACGCTAAACGGTA+GGG - chr6_2:23290555-23290574 Msa0913120:CDS 40.0%
TGGAGTTGGGTTCAGTTGAA+GGG - chr6_2:23285508-23285527 Msa0913120:intron 45.0%
TTAAATGTGGTCACCTCTCC+TGG + chr6_2:23285576-23285595 None:intergenic 45.0%
!! ATAGTGGATGTGGGACTAAC+CGG + chr6_2:23285686-23285705 None:intergenic 45.0%
TGCTCCATAACCACAAGAGA+GGG + chr6_2:23285790-23285809 None:intergenic 45.0%
ATGCTCCATAACCACAAGAG+AGG + chr6_2:23285791-23285810 None:intergenic 45.0%
GTCTGAAAGTGGGAATGTTG+TGG + chr6_2:23285847-23285866 None:intergenic 45.0%
TTGGAGGACCGAACATCTAT+GGG + chr6_2:23286229-23286248 None:intergenic 45.0%
TTTGGAGGACCGAACATCTA+TGG + chr6_2:23286230-23286249 None:intergenic 45.0%
GGAAAGAAAGGTTCTGTGTG+TGG - chr6_2:23286378-23286397 Msa0913120:intron 45.0%
ACATCGATGATGTCCAATGG+TGG - chr6_2:23286414-23286433 Msa0913120:CDS 45.0%
CATCGATGATGTCCAATGGT+GGG - chr6_2:23286415-23286434 Msa0913120:CDS 45.0%
ATCGATGATGTCCAATGGTG+GGG - chr6_2:23286416-23286435 Msa0913120:CDS 45.0%
GCAAGCACAAAAGTCCACTT+CGG - chr6_2:23286572-23286591 Msa0913120:CDS 45.0%
CAACCCCAAAATATGTGGGT+CGG - chr6_2:23286641-23286660 Msa0913120:CDS 45.0%
! AGTCCGACCCACATATTTTG+GGG + chr6_2:23286647-23286666 None:intergenic 45.0%
! GAAGTCCGACCCACATATTT+TGG + chr6_2:23286649-23286668 None:intergenic 45.0%
! GACTGAATATCTGGAGCATG+AGG + chr6_2:23286676-23286695 None:intergenic 45.0%
ATTCACCACCTCACACACAT+AGG + chr6_2:23286698-23286717 None:intergenic 45.0%
ATGTGTGTGAGGTGGTGAAT+CGG - chr6_2:23286698-23286717 Msa0913120:intron 45.0%
CCAAAAGCTAGATTGTGGGA+GGG + chr6_2:23286745-23286764 None:intergenic 45.0%
!!! CCTCCCACAATCTAGCTTTT+GGG - chr6_2:23286743-23286762 Msa0913120:intron 45.0%
!!! CTCCCACAATCTAGCTTTTG+GGG - chr6_2:23286744-23286763 Msa0913120:intron 45.0%
GACCCCAAAAGCTAGATTGT+GGG + chr6_2:23286749-23286768 None:intergenic 45.0%
TGTGACTGACCCTAGTTTCA+TGG - chr6_2:23287262-23287281 Msa0913120:intron 45.0%
GCAGTTATCGCCATGAAACT+AGG + chr6_2:23287275-23287294 None:intergenic 45.0%
!! ACAGGAGCAAACTCTGGAAT+TGG - chr6_2:23287464-23287483 Msa0913120:intron 45.0%
! TGGTTAGTGATTTTCGCCAG+TGG - chr6_2:23287587-23287606 Msa0913120:intron 45.0%
TCGTAATAAGGAGAGAGGAG+AGG - chr6_2:23287631-23287650 Msa0913120:intron 45.0%
TGTCACGGATATCAAGTCAC+TGG - chr6_2:23288148-23288167 Msa0913120:intron 45.0%
!! ATATCAAGTCACTGGCTTCC+AGG - chr6_2:23288156-23288175 Msa0913120:intron 45.0%
GTAAGTGTCAGTATCGTGCT+TGG + chr6_2:23288277-23288296 None:intergenic 45.0%
CCGACACATGTGGTTGTATT+CGG + chr6_2:23288324-23288343 None:intergenic 45.0%
CCGAATACAACCACATGTGT+CGG - chr6_2:23288321-23288340 Msa0913120:intron 45.0%
TTCCCTGATTATACCTGTCG+TGG - chr6_2:23288695-23288714 Msa0913120:intron 45.0%
GACCACGACAGGTATAATCA+GGG + chr6_2:23288700-23288719 None:intergenic 45.0%
TGACCACGACAGGTATAATC+AGG + chr6_2:23288701-23288720 None:intergenic 45.0%
AGCAGATTAATGACCACGAC+AGG + chr6_2:23288711-23288730 None:intergenic 45.0%
TTGCTTCGCGAAACACGATT+TGG + chr6_2:23288839-23288858 None:intergenic 45.0%
! GATAGTGGCAAAAGCATAGC+GGG + chr6_2:23288933-23288952 None:intergenic 45.0%
CGGTACCATCAATTCAGTCA+TGG + chr6_2:23289035-23289054 None:intergenic 45.0%
! TGAATTGATGGTACCGTTGC+TGG - chr6_2:23289039-23289058 Msa0913120:intron 45.0%
CGTGTCATCACAGTTTCTTC+TGG - chr6_2:23289082-23289101 Msa0913120:intron 45.0%
GTCATCACAGTTTCTTCTGG+TGG - chr6_2:23289085-23289104 Msa0913120:intron 45.0%
TCCCTTGACCAAAGATCTAC+AGG - chr6_2:23289120-23289139 Msa0913120:intron 45.0%
! AGTGTTGGAGTGTCAGATAC+GGG + chr6_2:23289330-23289349 None:intergenic 45.0%
! CAGTGTTGGAGTGTCAGATA+CGG + chr6_2:23289331-23289350 None:intergenic 45.0%
GTAACCATGTGTGTCAGTGT+TGG + chr6_2:23289345-23289364 None:intergenic 45.0%
ACGGACAAATCGCATTGAAG+TGG - chr6_2:23289506-23289525 Msa0913120:intron 45.0%
GACTTTGTCATTGACGGCAT+TGG + chr6_2:23289567-23289586 None:intergenic 45.0%
TCCTACATTTGTAACTCGGG+GGG + chr6_2:23289768-23289787 None:intergenic 45.0%
GAAATGCCAGGTTGCACTAA+CGG - chr6_2:23289942-23289961 Msa0913120:intron 45.0%
! GGATTTTACTCGATGCATCC+AGG - chr6_2:23290000-23290019 Msa0913120:intron 45.0%
TTTACTCGATGCATCCAGGT+TGG - chr6_2:23290004-23290023 Msa0913120:intron 45.0%
TTACTCGATGCATCCAGGTT+GGG - chr6_2:23290005-23290024 Msa0913120:intron 45.0%
! GGCAAACTTTTTGCAACACC+AGG + chr6_2:23290039-23290058 None:intergenic 45.0%
! GGTGTTGCAAAAAGTTTGCC+AGG - chr6_2:23290039-23290058 Msa0913120:intron 45.0%
TAATCCTTGATTCCCTAGCG+GGG - chr6_2:23290150-23290169 Msa0913120:intron 45.0%
!! ATGCTGAGAGAGTTGGTAAG+TGG + chr6_2:23290270-23290289 None:intergenic 45.0%
CAACTCTCTCAGCATCATGT+CGG - chr6_2:23290275-23290294 Msa0913120:intron 45.0%
CCAGATACCAACTTCTCCTT+TGG + chr6_2:23290401-23290420 None:intergenic 45.0%
!! CCAAAGGAGAAGTTGGTATC+TGG - chr6_2:23290398-23290417 Msa0913120:intron 45.0%
ACTTCTACGCTAAACGGTAG+GGG - chr6_2:23290556-23290575 Msa0913120:CDS 45.0%
!! ATAATTAAATATTCAATTTA+AGG - chr6_2:23285917-23285936 Msa0913120:intron 5.0%
!! TAATTAAATATTCAATTTAA+GGG - chr6_2:23285918-23285937 Msa0913120:intron 5.0%
CAACTGAACCCAACTCCAGT+TGG + chr6_2:23285506-23285525 None:intergenic 50.0%
CTGGAGTTGGGTTCAGTTGA+AGG - chr6_2:23285507-23285526 Msa0913120:intron 50.0%
GGAGTTGGGTTCAGTTGAAG+GGG - chr6_2:23285509-23285528 Msa0913120:intron 50.0%
GTTCGAATTTCGACCAGGAG+AGG - chr6_2:23285560-23285579 Msa0913120:intron 50.0%
GTCTCCCTCTCTTGTGGTTA+TGG - chr6_2:23285783-23285802 Msa0913120:intron 50.0%
! GCATTGACCTGTGTTGCTCT+CGG - chr6_2:23285807-23285826 Msa0913120:intron 50.0%
! CATTGACCTGTGTTGCTCTC+GGG - chr6_2:23285808-23285827 Msa0913120:intron 50.0%
! ATTGACCTGTGTTGCTCTCG+GGG - chr6_2:23285809-23285828 Msa0913120:intron 50.0%
TCGATGATGTCCAATGGTGG+GGG - chr6_2:23286417-23286436 Msa0913120:CDS 50.0%
!!! CGACCCACATATTTTGGGGT+TGG + chr6_2:23286643-23286662 None:intergenic 50.0%
TCAGTCCTATGTGTGTGAGG+TGG - chr6_2:23286690-23286709 Msa0913120:intron 50.0%
!!! CCCTCCCACAATCTAGCTTT+TGG - chr6_2:23286742-23286761 Msa0913120:intron 50.0%
CCCAAAAGCTAGATTGTGGG+AGG + chr6_2:23286746-23286765 None:intergenic 50.0%
CGACCCCAAAAGCTAGATTG+TGG + chr6_2:23286750-23286769 None:intergenic 50.0%
GAATGTTCCAGTGCACGTGT+TGG - chr6_2:23288190-23288209 Msa0913120:CDS 50.0%
GTGTTAGTGTCCGACACATG+TGG + chr6_2:23288334-23288353 None:intergenic 50.0%
TGTCGGACACTAACACGTGT+AGG - chr6_2:23288338-23288357 Msa0913120:intron 50.0%
TGTGATGACACGTGCATCAG+GGG + chr6_2:23289074-23289093 None:intergenic 50.0%
CTGTGATGACACGTGCATCA+GGG + chr6_2:23289075-23289094 None:intergenic 50.0%
ACTGTGATGACACGTGCATC+AGG + chr6_2:23289076-23289095 None:intergenic 50.0%
TGCTCGAAACAAGCGTGTTC+AGG - chr6_2:23289255-23289274 Msa0913120:intron 50.0%
CACTCCAACACTGACACACA+TGG - chr6_2:23289338-23289357 Msa0913120:intron 50.0%
TGACACGACTCAAAGTGAGG+CGG + chr6_2:23289652-23289671 None:intergenic 50.0%
TCCCCCCGAGTTACAAATGT+AGG - chr6_2:23289764-23289783 Msa0913120:intron 50.0%
AATCCTTGATTCCCTAGCGG+GGG - chr6_2:23290151-23290170 Msa0913120:intron 50.0%
AAAAGTCACATCCCCCGCTA+GGG + chr6_2:23290165-23290184 None:intergenic 50.0%
CTTGGAGTCGTGTATTTGGG+AGG + chr6_2:23290207-23290226 None:intergenic 50.0%
CGACATGATGCTGAGAGAGT+TGG + chr6_2:23290277-23290296 None:intergenic 50.0%
AAGGCGCAGACACAGTTATC+TGG - chr6_2:23290363-23290382 Msa0913120:intron 50.0%
CGCAGACACAGTTATCTGGT+TGG - chr6_2:23290367-23290386 Msa0913120:intron 50.0%
CTGGTTGGCACTACAACCAA+AGG - chr6_2:23290382-23290401 Msa0913120:intron 50.0%
TGTTGCGTCTCCCTCTCTTG+TGG - chr6_2:23285777-23285796 Msa0913120:intron 55.0%
GGGAATGTTGTGGAGACCGA+GGG + chr6_2:23285837-23285856 None:intergenic 55.0%
TGGGAATGTTGTGGAGACCG+AGG + chr6_2:23285838-23285857 None:intergenic 55.0%
GAGGACCGAACATCTATGGG+TGG + chr6_2:23286226-23286245 None:intergenic 55.0%
! TGGAAGTACACCCCCACCAT+TGG + chr6_2:23286430-23286449 None:intergenic 55.0%
!! GACTTGAGCGTTGGAGTGCA+TGG + chr6_2:23286450-23286469 None:intergenic 55.0%
AATTGGTTATGCGGCAGCCG+AGG - chr6_2:23287481-23287500 Msa0913120:CDS 55.0%
ATTGGTTATGCGGCAGCCGA+GGG - chr6_2:23287482-23287501 Msa0913120:CDS 55.0%
AAACCGCTGTGCAAGACCCT+CGG + chr6_2:23287501-23287520 None:intergenic 55.0%
GGGGAAGCTTTCTCCAGCAA+CGG + chr6_2:23289055-23289074 None:intergenic 55.0%
TAACTCGGGGGGAATCTTCG+AGG + chr6_2:23289757-23289776 None:intergenic 55.0%
CAAAAGTCACATCCCCCGCT+AGG + chr6_2:23290166-23290185 None:intergenic 55.0%
TGTTGCTCTCGGGGTTCCCT+CGG - chr6_2:23285818-23285837 Msa0913120:intron 60.0%
CATCCCCCGCTAGGGAATCA+AGG + chr6_2:23290157-23290176 None:intergenic 60.0%
GGGAACCCCGAGAGCAACAC+AGG + chr6_2:23285817-23285836 None:intergenic 65.0%
CAGCCGAGGGTCTTGCACAG+CGG - chr6_2:23287495-23287514 Msa0913120:CDS 65.0%
!! CCAGGAGTGTCAGCCCAACC+TGG + chr6_2:23290021-23290040 None:intergenic 65.0%
! CCAGGTTGGGCTGACACTCC+TGG - chr6_2:23290018-23290037 Msa0913120:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 23284862 23290825 23284862 ID=Msa0913120;Name=Msa0913120
chr6_2 mRNA 23284862 23290825 23284862 ID=Msa0913120-mRNA-1;Parent=Msa0913120;Name=Msa0913120-mRNA-1;_AED=0.19;_eAED=0.19;_QI=41|1|1|1|1|1|10|281|345
chr6_2 exon 23284862 23285353 23284862 ID=Msa0913120-mRNA-1:exon:4628;Parent=Msa0913120-mRNA-1
chr6_2 exon 23285614 23285735 23285614 ID=Msa0913120-mRNA-1:exon:4627;Parent=Msa0913120-mRNA-1
chr6_2 exon 23286411 23286467 23286411 ID=Msa0913120-mRNA-1:exon:4626;Parent=Msa0913120-mRNA-1
chr6_2 exon 23286546 23286696 23286546 ID=Msa0913120-mRNA-1:exon:4625;Parent=Msa0913120-mRNA-1
chr6_2 exon 23287026 23287075 23287026 ID=Msa0913120-mRNA-1:exon:4624;Parent=Msa0913120-mRNA-1
chr6_2 exon 23287476 23287556 23287476 ID=Msa0913120-mRNA-1:exon:4623;Parent=Msa0913120-mRNA-1
chr6_2 exon 23287981 23288080 23287981 ID=Msa0913120-mRNA-1:exon:4622;Parent=Msa0913120-mRNA-1
chr6_2 exon 23288171 23288290 23288171 ID=Msa0913120-mRNA-1:exon:4621;Parent=Msa0913120-mRNA-1
chr6_2 exon 23290550 23290611 23290550 ID=Msa0913120-mRNA-1:exon:4620;Parent=Msa0913120-mRNA-1
chr6_2 exon 23290701 23290825 23290701 ID=Msa0913120-mRNA-1:exon:4619;Parent=Msa0913120-mRNA-1
chr6_2 five_prime_UTR 23290785 23290825 23290785 ID=Msa0913120-mRNA-1:five_prime_utr;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23290701 23290784 23290701 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23290550 23290611 23290550 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23288171 23288290 23288171 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23287981 23288080 23287981 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23287476 23287556 23287476 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23287026 23287075 23287026 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23286546 23286696 23286546 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23286411 23286467 23286411 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23285614 23285735 23285614 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 CDS 23285143 23285353 23285143 ID=Msa0913120-mRNA-1:cds;Parent=Msa0913120-mRNA-1
chr6_2 three_prime_UTR 23284862 23285142 23284862 ID=Msa0913120-mRNA-1:three_prime_utr;Parent=Msa0913120-mRNA-1
Gene Sequence

>Msa0913120

ATGAAAAAAAGTGGAACATTGCAATTACATCTTCAGTTTCACTTCTCCTTTAACATTGTATCTCTCACTATGTTTCTTGTCAAGACATGGAGACAAACTGCTTTTGGTGTTTATGGTTATATGAATTTCACTAAACCTGCTTTTCTCGAGCATTCTAAGAATTTCAAACCAGAGGAAACAGAAACACAAATACCAGGGAAGAATTGCATTGTAACAGGAGCAAACTCTGGAATTGGTTATGCGGCAGCCGAGGGTCTTGCACAGCGTGGTGCAAATGTCTATCTAGTATGTCGTAATAAGGAGAGAGGAGAGGCTGCTCTTTCTCAAATTCAGACTAAAACTGGCAATCAAAATGTGTATCTGGAGATTTGTGATCTGTCATCTGTCACGGATATCAAGTCACTGGCTTCCAGGTTTTCGAAAAAGAATGTTCCAGTGCACGTGTTGGTTAACAATGCTGGCTTGCTTGAGCAAAATCGAGTTACTACATCAGAAGGGTTTGAGTTGAATTTTGCTGTCAATGTATTAGGCACTTACGCCATGACTGAATTGATGGTACCGTTGCTGGAGAAAGCTTCCCCTGATGCACGTGTCATCACAGTTTCTTCTGGTGGAATGTATAGTACTCCCTTGACCAAAGATCTACAGTATTCTGAGAGCAGCTTTAATGGGACCTTACAATATGCTCGAAACAAGCGTGTTCAGGTTGCACTAACGGAAAATTGGGGAGAAACATACAAGAACAAAGGGATAGGATTTTACTCGATGCATCCAGGTTGGGCTGACACTCCTGGTGTTGCAAAAAGTTTGCCAGGCTTCTCAAAATCGTTAGCAGGGAAGCTTAGAACAAGCGATGAAGGCGCAGACACAGTTATCTGGTTGGCACTACAACCAAAGGAGAAGTTGGTATCTGGTGCATTTTATTTTGATAGAGCTGAAGCTCCTAAGCACCTTTCATTTAATGCTACAAGTGGTTCTCATACTATGATCAACTCTGTCATTGATAGTCTTCAATCCTTTGCATCTCTTTCGGCTTAA

Protein sequence

>Msa0913120

MKKSGTLQLHLQFHFSFNIVSLTMFLVKTWRQTAFGVYGYMNFTKPAFLEHSKNFKPEETETQIPGKNCIVTGANSGIGYAAAEGLAQRGANVYLVCRNKERGEAALSQIQTKTGNQNVYLEICDLSSVTDIKSLASRFSKKNVPVHVLVNNAGLLEQNRVTTSEGFELNFAVNVLGTYAMTELMVPLLEKASPDARVITVSSGGMYSTPLTKDLQYSESSFNGTLQYARNKRVQVALTENWGETYKNKGIGFYSMHPGWADTPGVAKSLPGFSKSLAGKLRTSDEGADTVIWLALQPKEKLVSGAFYFDRAEAPKHLSFNATSGSHTMINSVIDSLQSFASLSA*