AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1216370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216370 MtrunA17_Chr4g0065661 94.737 361 9 4 1 354 1 358 0.0 694
Msa1216370 MtrunA17_Chr2g0287731 71.923 260 67 3 99 353 127 385 9.12e-138 397
Msa1216370 MtrunA17_Chr1g0181351 47.308 260 130 4 94 350 88 343 1.51e-86 265
Msa1216370 MtrunA17_Chr7g0264071 45.882 255 109 4 99 353 103 328 1.77e-74 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216370 AT5G19080.1 58.647 266 98 5 93 354 119 376 4.83e-103 308
Msa1216370 AT3G06140.1 60.236 254 92 5 102 354 112 357 5.29e-100 300
Msa1216370 AT3G09770.1 49.035 259 123 4 96 350 117 370 1.02e-83 259
Msa1216370 AT5G03200.1 44.478 335 147 11 28 351 31 337 2.41e-80 249
Msa1216370 AT3G53410.1 45.769 260 131 6 96 354 48 298 8.06e-75 233
Msa1216370 AT3G09770.2 45.815 227 114 4 96 318 117 338 2.88e-63 205

Find 123 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGGCCAATTCCTTTC+TGG 0.102959 8_1:+78092988 None:intergenic
CTGATGGCTGACAAAATTTC+TGG 0.178200 8_1:+78092973 None:intergenic
TTCTTATTCATCTTGGATTC+AGG 0.179706 8_1:+78092332 None:intergenic
GCAAATAACTCAAGCTGTTT+TGG 0.219800 8_1:-78092796 Msa1216370:CDS
TGACTTAGGTTTCTTTGATT+TGG 0.233161 8_1:-78092940 Msa1216370:CDS
TTACCTTCTTTGCAGTTTCA+TGG 0.243842 8_1:+78093922 None:intergenic
TCACTCACTCAACTGAAAAT+TGG 0.245007 8_1:+78094263 None:intergenic
CAATTGGTTGGCGGCATATA+GGG 0.281867 8_1:+78092407 None:intergenic
ATCTCTATCAGTTGCTCAAT+TGG 0.285101 8_1:+78092391 None:intergenic
CATATTACACACTCCTTTCC+AGG 0.293169 8_1:+78092639 None:intergenic
CGAGTGTGCAAAAGCTTTGC+GGG 0.313846 8_1:-78092446 Msa1216370:CDS
TCAATTGGTTGGCGGCATAT+AGG 0.323799 8_1:+78092406 None:intergenic
AATCATGTTCTTATTCATCT+TGG 0.323829 8_1:+78092325 None:intergenic
CAGTGACACTGGTCCTTTCC+AGG 0.340830 8_1:-78092766 Msa1216370:CDS
GGCCAATTCCTTTCTGGAAT+GGG 0.342924 8_1:+78092994 None:intergenic
TATGAGTTGAGAGAGTTATA+TGG 0.348028 8_1:-78092702 Msa1216370:CDS
TTGAGAGAGTTATATGGAAT+TGG 0.359843 8_1:-78092696 Msa1216370:CDS
TTCCCATTCCAGAAAGGAAT+TGG 0.365027 8_1:-78092996 Msa1216370:CDS
TATTGATGAGGAGGAGGAGG+AGG 0.370203 8_1:+78094077 None:intergenic
ACATTGATGTTCTTCTTCTC+TGG 0.372529 8_1:+78093061 None:intergenic
TATCATTTGCATTGTAGATC+TGG 0.373022 8_1:-78092146 Msa1216370:three_prime_UTR
AGGCTGAGGCAGCATGGAAT+TGG 0.393269 8_1:+78094031 None:intergenic
AAGTGGTTAGGCAAATTCTA+TGG 0.397311 8_1:-78092740 Msa1216370:CDS
GCAGTTTCATGGCCAGTGTA+TGG 0.399077 8_1:+78093933 None:intergenic
AGGGGAAATATGTCTTCTTC+AGG 0.406792 8_1:+78092897 None:intergenic
TTTGCATTGTAGATCTGGTT+TGG 0.410772 8_1:-78092141 Msa1216370:three_prime_UTR
AAGGAAATCAAGTGGTGATC+AGG 0.412166 8_1:+78093843 None:intergenic
GAGTAGTATTGATGAGGAGG+AGG 0.417420 8_1:+78094071 None:intergenic
TGGCCAATTCCTTTCTGGAA+TGG 0.423982 8_1:+78092993 None:intergenic
CCTCATCAATACTACTCAAA+TGG 0.428146 8_1:-78094065 Msa1216370:CDS
TCTTATTCATCTTGGATTCA+GGG 0.429217 8_1:+78092333 None:intergenic
GGTAAGACAGCAGTATCCTT+TGG 0.432308 8_1:+78092606 None:intergenic
ATGCGCTGAATCAACGCCTT+TGG 0.436735 8_1:-78092868 Msa1216370:CDS
TGAGAAGAGTAATAATAGTA+AGG 0.437802 8_1:+78094146 None:intergenic
CGTGATCGGCTCAAATGCTT+CGG 0.440976 8_1:+78093019 None:intergenic
TAGTATTGATGAGGAGGAGG+AGG 0.441106 8_1:+78094074 None:intergenic
GGCTGTGGCTGTGGCATCAG+AGG 0.441122 8_1:+78094116 None:intergenic
CAAGTGGTGATCAGGATTGT+TGG 0.441902 8_1:+78093851 None:intergenic
GTGGTGTTGTATTGTGTTAG+TGG 0.448372 8_1:-78094332 Msa1216370:five_prime_UTR
ACGCCAAAGAAAAGATGAAA+AGG 0.450424 8_1:-78094379 Msa1216370:five_prime_UTR
CCTTGAGGAGGCTGTGGCTG+TGG 0.452037 8_1:+78094107 None:intergenic
ACTCAACTGAAAATTGGAAC+AGG 0.452941 8_1:+78094269 None:intergenic
GTGATCGGCTCAAATGCTTC+GGG 0.457608 8_1:+78093020 None:intergenic
CTTTCCAGGTTAAAGTGGTT+AGG 0.458992 8_1:-78092752 Msa1216370:CDS
AGTGTGAGATGGGTGGTTCA+TGG 0.459707 8_1:-78094241 Msa1216370:exon
CCTGCTCATTTATATTGTAC+AGG 0.459912 8_1:-78092191 Msa1216370:three_prime_UTR
GAGGTGGTGGATAGTGTTCA+TGG 0.461809 8_1:+78094168 None:intergenic
TCGATGCCCTCTATCCTGGC+AGG 0.463596 8_1:-78093815 Msa1216370:intron
AAGTGGTGATCAGGATTGTT+GGG 0.464409 8_1:+78093852 None:intergenic
GGCTGTGGCATCAGAGGCTG+AGG 0.464754 8_1:+78094122 None:intergenic
GATCAGGATTGTTGGGATCC+TGG 0.468434 8_1:+78093859 None:intergenic
GGATCATTACGATCGAAATC+AGG 0.469121 8_1:+78092660 None:intergenic
TCAGGAACAGGTATTGACTT+AGG 0.473795 8_1:-78092954 Msa1216370:CDS
GCGAGTGTGCAAAAGCTTTG+CGG 0.476383 8_1:-78092447 Msa1216370:CDS
TAATAATAGTAAGGAGGTGG+TGG 0.477071 8_1:+78094155 None:intergenic
CCAGTGTATGGAGGTGGTGG+TGG 0.478271 8_1:+78093945 None:intergenic
AGACGAACCTGCCAGGATAG+AGG 0.481223 8_1:+78093808 None:intergenic
TCAAATGCTTCGGGAAATAG+AGG 0.481528 8_1:+78093029 None:intergenic
CCTCTTTGTAATGTATCTTG+AGG 0.484206 8_1:-78092107 None:intergenic
CTATCAGTTGCTCAATTGGT+TGG 0.489453 8_1:+78092395 None:intergenic
AAAAGATGAAAAGGGAAGCA+AGG 0.489935 8_1:-78094370 Msa1216370:five_prime_UTR
TTCTGGAATGGGAACGTGAT+CGG 0.491433 8_1:+78093005 None:intergenic
ATTGATGAGGAGGAGGAGGA+GGG 0.494857 8_1:+78094078 None:intergenic
TTGAGTGAGTGAGTGTGAGA+TGG 0.495129 8_1:-78094252 Msa1216370:exon
GATTTCGATCGTAATGATCC+TGG 0.496477 8_1:-78092657 Msa1216370:CDS
GTATTTGTTGTTGCATAGAA+AGG 0.501927 8_1:+78094002 None:intergenic
TGAGTGAGTGAGTGTGAGAT+GGG 0.502779 8_1:-78094251 Msa1216370:exon
TGGCCATGAAACTGCAAAGA+AGG 0.508084 8_1:-78093925 Msa1216370:CDS
TGGCCAGTGTATGGAGGTGG+TGG 0.511527 8_1:+78093942 None:intergenic
TCAGGGTAAAATGATGTCAT+TGG 0.515723 8_1:+78092350 None:intergenic
GAGTAATAATAGTAAGGAGG+TGG 0.516479 8_1:+78094152 None:intergenic
CTTGAGTTATTTGCATGTGA+GGG 0.517477 8_1:+78092805 None:intergenic
CGCCAAAGAAAAGATGAAAA+GGG 0.518233 8_1:-78094378 Msa1216370:five_prime_UTR
TGGTCCTTTCCAGGTTAAAG+TGG 0.521296 8_1:-78092757 Msa1216370:CDS
CGTTGATAGACGAACCTGCC+AGG 0.527320 8_1:+78093801 None:intergenic
TCAGTTGCTCAATTGGTTGG+CGG 0.527891 8_1:+78092398 None:intergenic
TAGAAAGGGTGGTGAGGCTG+AGG 0.530145 8_1:+78094017 None:intergenic
ATGAAACTGCAAAGAAGGTA+AGG 0.531866 8_1:-78093920 Msa1216370:CDS
CCTGTACAATATAAATGAGC+AGG 0.534383 8_1:+78092191 None:intergenic
CTAACCACTTTAACCTGGAA+AGG 0.535092 8_1:+78092753 None:intergenic
TTTGCCTAACCACTTTAACC+TGG 0.535215 8_1:+78092748 None:intergenic
GTGAGGGGATGCATCTACTA+AGG 0.540789 8_1:+78092821 None:intergenic
AATATGTCTTCTTCAGGTGA+AGG 0.544420 8_1:+78092903 None:intergenic
ATATAAAATTAGATTCTATG+TGG 0.547472 8_1:-78092237 Msa1216370:three_prime_UTR
TGTCTTACCTTGCCGACACA+TGG 0.547747 8_1:-78092592 Msa1216370:intron
ACACACTCTGCAGCTTTACC+AGG 0.548102 8_1:-78093877 Msa1216370:CDS
TGAGGCAGCATGGAATTGGC+AGG 0.548235 8_1:+78094035 None:intergenic
ATATGTCTTCTTCAGGTGAA+GGG 0.552252 8_1:+78092904 None:intergenic
AAGTAACCTTGAGGAGGCTG+TGG 0.554211 8_1:+78094101 None:intergenic
TTGATTCAGCGCATATTACG+AGG 0.561322 8_1:+78092877 None:intergenic
CCTCAAGATACATTACAAAG+AGG 0.562171 8_1:+78092107 None:intergenic
GCTTGAGTTATTTGCATGTG+AGG 0.564572 8_1:+78092804 None:intergenic
TATTTGTTGTTGCATAGAAA+GGG 0.567537 8_1:+78094003 None:intergenic
GAGAAGAAGAACATCAATGT+AGG 0.568366 8_1:-78093058 Msa1216370:CDS
GAAGAGTAATAATAGTAAGG+AGG 0.571669 8_1:+78094149 None:intergenic
TCATGGCCAGTGTATGGAGG+TGG 0.578139 8_1:+78093939 None:intergenic
ATCACGTTCCCATTCCAGAA+AGG 0.578262 8_1:-78093002 Msa1216370:CDS
GACGAACCTGCCAGGATAGA+GGG 0.579142 8_1:+78093809 None:intergenic
TTTGAGTAGTATTGATGAGG+AGG 0.581162 8_1:+78094068 None:intergenic
TGAACAACATCTACATCAAG+TGG 0.588278 8_1:+78093975 None:intergenic
CGATCGTAATGATCCTGGAA+AGG 0.591702 8_1:-78092652 Msa1216370:CDS
CCATTTGAGTAGTATTGATG+AGG 0.605820 8_1:+78094065 None:intergenic
CCACAGCCACAGCCTCCTCA+AGG 0.607092 8_1:-78094107 Msa1216370:CDS
GTGGTGAGGCTGAGGCAGCA+TGG 0.607957 8_1:+78094025 None:intergenic
TTGTTGTTGCATAGAAAGGG+TGG 0.612191 8_1:+78094006 None:intergenic
AAGTCAATACCTGTTCCTGA+TGG 0.616490 8_1:+78092957 None:intergenic
AATGATACCATGTGTCGGCA+AGG 0.619576 8_1:+78092585 None:intergenic
GCATCTACTAAGGAACTGAC+AGG 0.623246 8_1:+78092831 None:intergenic
GTGAGTGAGTGTGAGATGGG+TGG 0.635300 8_1:-78094248 Msa1216370:exon
CCACCACCACCTCCATACAC+TGG 0.639768 8_1:-78093945 Msa1216370:CDS
TTGAGTTATTTGCATGTGAG+GGG 0.641986 8_1:+78092806 None:intergenic
CGAAAACAAAGGAAATCAAG+TGG 0.643884 8_1:+78093835 None:intergenic
AACTGAAAATTGGAACAGGA+TGG 0.644466 8_1:+78094273 None:intergenic
GTTTCATGGCCAGTGTATGG+AGG 0.646913 8_1:+78093936 None:intergenic
CTAGTAATGATACCATGTGT+CGG 0.651467 8_1:+78092580 None:intergenic
GGAGGGAAGTAACCTTGAGG+AGG 0.654039 8_1:+78094095 None:intergenic
AATATGCATGACAGAACCAA+AGG 0.654188 8_1:-78092622 Msa1216370:CDS
TGATTCAGCGCATATTACGA+GGG 0.654776 8_1:+78092878 None:intergenic
GGAGTATCATGATCTTCCAA+AGG 0.657082 8_1:+78092852 None:intergenic
GATTCAGCGCATATTACGAG+GGG 0.658579 8_1:+78092879 None:intergenic
ATAGAGGGCATCGAAAACAA+AGG 0.673912 8_1:+78093824 None:intergenic
GGAGGAGGGAAGTAACCTTG+AGG 0.702725 8_1:+78094092 None:intergenic
GTTGCATAGAAAGGGTGGTG+AGG 0.707943 8_1:+78094011 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTTTATCTTAATTAAA+AGG - chr8_1:78092857-78092876 Msa1216370:CDS 10.0%
!! TATGTTTATCTTAATTAAAA+GGG - chr8_1:78092858-78092877 Msa1216370:CDS 10.0%
!! TTATGTTTATCTTAATTAAA+AGG - chr8_1:78092857-78092876 Msa1216370:CDS 10.0%
!! TATGTTTATCTTAATTAAAA+GGG - chr8_1:78092858-78092877 Msa1216370:CDS 10.0%
!! ATATAAAATTAGATTCTATG+TGG - chr8_1:78094272-78094291 Msa1216370:five_prime_UTR 15.0%
!! ATATAAAATTAGATTCTATG+TGG - chr8_1:78094272-78094291 Msa1216370:five_prime_UTR 15.0%
!! TTAAAACCACAACAATTAAA+TGG - chr8_1:78093094-78093113 Msa1216370:intron 20.0%
!! ATCATTCAATTGTTTAATTG+TGG + chr8_1:78093157-78093176 None:intergenic 20.0%
!! AATAATCAAAATAGTGAAGT+GGG + chr8_1:78094004-78094023 None:intergenic 20.0%
!! AAATAATCAAAATAGTGAAG+TGG + chr8_1:78094005-78094024 None:intergenic 20.0%
!! TTAAAACCACAACAATTAAA+TGG - chr8_1:78093094-78093113 Msa1216370:intron 20.0%
!! ATCATTCAATTGTTTAATTG+TGG + chr8_1:78093157-78093176 None:intergenic 20.0%
!! AATAATCAAAATAGTGAAGT+GGG + chr8_1:78094004-78094023 None:intergenic 20.0%
!! AAATAATCAAAATAGTGAAG+TGG + chr8_1:78094005-78094024 None:intergenic 20.0%
! AGTGGAAAAGAAAAAAGAAT+TGG - chr8_1:78092195-78092214 Msa1216370:three_prime_UTR 25.0%
! AAAGAAAAAAGAATTGGATC+TGG - chr8_1:78092201-78092220 Msa1216370:three_prime_UTR 25.0%
! TGAGAAGAGTAATAATAGTA+AGG + chr8_1:78092366-78092385 None:intergenic 25.0%
!!! TATTTGTTGTTGCATAGAAA+GGG + chr8_1:78092509-78092528 None:intergenic 25.0%
! TTACTGAATATTCAATTGAC+AGG + chr8_1:78092915-78092934 None:intergenic 25.0%
! TGCTACTACTTTCAATTATT+CGG - chr8_1:78093267-78093286 Msa1216370:intron 25.0%
!!! GTTTTGTTTCAAATTATGAC+TGG - chr8_1:78093289-78093308 Msa1216370:intron 25.0%
! TTCTGGTCATTACAAATAAA+AGG + chr8_1:78093410-78093429 None:intergenic 25.0%
! ATCATTACTAGTTGTTTGTT+TGG - chr8_1:78093941-78093960 Msa1216370:CDS 25.0%
! AATCATGTTCTTATTCATCT+TGG + chr8_1:78094187-78094206 None:intergenic 25.0%
! AGTGGAAAAGAAAAAAGAAT+TGG - chr8_1:78092195-78092214 Msa1216370:three_prime_UTR 25.0%
! AAAGAAAAAAGAATTGGATC+TGG - chr8_1:78092201-78092220 Msa1216370:three_prime_UTR 25.0%
! TGAGAAGAGTAATAATAGTA+AGG + chr8_1:78092366-78092385 None:intergenic 25.0%
!!! TATTTGTTGTTGCATAGAAA+GGG + chr8_1:78092509-78092528 None:intergenic 25.0%
! TTACTGAATATTCAATTGAC+AGG + chr8_1:78092915-78092934 None:intergenic 25.0%
! TGCTACTACTTTCAATTATT+CGG - chr8_1:78093267-78093286 Msa1216370:intron 25.0%
!!! GTTTTGTTTCAAATTATGAC+TGG - chr8_1:78093289-78093308 Msa1216370:intron 25.0%
! TTCTGGTCATTACAAATAAA+AGG + chr8_1:78093410-78093429 None:intergenic 25.0%
! ATCATTACTAGTTGTTTGTT+TGG - chr8_1:78093941-78093960 Msa1216370:CDS 25.0%
! AATCATGTTCTTATTCATCT+TGG + chr8_1:78094187-78094206 None:intergenic 25.0%
! TTCCCTTTTCATCTTTTCTT+TGG + chr8_1:78092136-78092155 None:intergenic 30.0%
AAGGATTAAAAATTGGCAAG+TGG - chr8_1:78092158-78092177 Msa1216370:three_prime_UTR 30.0%
GAAGAGTAATAATAGTAAGG+AGG + chr8_1:78092363-78092382 None:intergenic 30.0%
!! GTATTTGTTGTTGCATAGAA+AGG + chr8_1:78092510-78092529 None:intergenic 30.0%
TGCAGTAAGAAAAGTAGAAA+AGG + chr8_1:78092734-78092753 None:intergenic 30.0%
! TACTTTTCTTACTGCATGTT+TGG - chr8_1:78092738-78092757 Msa1216370:CDS 30.0%
ATAACCTAATTACTACGCAA+TGG + chr8_1:78092833-78092852 None:intergenic 30.0%
GAATATTCAATTGACAGGTA+AGG + chr8_1:78092910-78092929 None:intergenic 30.0%
! AATTGAAGAGCATAAAGAGT+TGG + chr8_1:78092970-78092989 None:intergenic 30.0%
GTCTAACCATTTAATTGTTG+TGG + chr8_1:78093103-78093122 None:intergenic 30.0%
TAAGTAGAAGATCGTAATTC+TGG + chr8_1:78093427-78093446 None:intergenic 30.0%
TGACTTAGGTTTCTTTGATT+TGG - chr8_1:78093569-78093588 Msa1216370:intron 30.0%
! TATGAGTTGAGAGAGTTATA+TGG - chr8_1:78093807-78093826 Msa1216370:intron 30.0%
TTGAGAGAGTTATATGGAAT+TGG - chr8_1:78093813-78093832 Msa1216370:intron 30.0%
TCTTATTCATCTTGGATTCA+GGG + chr8_1:78094179-78094198 None:intergenic 30.0%
TTCTTATTCATCTTGGATTC+AGG + chr8_1:78094180-78094199 None:intergenic 30.0%
TATCATTTGCATTGTAGATC+TGG - chr8_1:78094363-78094382 Msa1216370:five_prime_UTR 30.0%
! TTCCCTTTTCATCTTTTCTT+TGG + chr8_1:78092136-78092155 None:intergenic 30.0%
AAGGATTAAAAATTGGCAAG+TGG - chr8_1:78092158-78092177 Msa1216370:three_prime_UTR 30.0%
GAAGAGTAATAATAGTAAGG+AGG + chr8_1:78092363-78092382 None:intergenic 30.0%
!! GTATTTGTTGTTGCATAGAA+AGG + chr8_1:78092510-78092529 None:intergenic 30.0%
TGCAGTAAGAAAAGTAGAAA+AGG + chr8_1:78092734-78092753 None:intergenic 30.0%
! TACTTTTCTTACTGCATGTT+TGG - chr8_1:78092738-78092757 Msa1216370:CDS 30.0%
ATAACCTAATTACTACGCAA+TGG + chr8_1:78092833-78092852 None:intergenic 30.0%
GAATATTCAATTGACAGGTA+AGG + chr8_1:78092910-78092929 None:intergenic 30.0%
! AATTGAAGAGCATAAAGAGT+TGG + chr8_1:78092970-78092989 None:intergenic 30.0%
GTCTAACCATTTAATTGTTG+TGG + chr8_1:78093103-78093122 None:intergenic 30.0%
TAAGTAGAAGATCGTAATTC+TGG + chr8_1:78093427-78093446 None:intergenic 30.0%
TGACTTAGGTTTCTTTGATT+TGG - chr8_1:78093569-78093588 Msa1216370:intron 30.0%
! TATGAGTTGAGAGAGTTATA+TGG - chr8_1:78093807-78093826 Msa1216370:intron 30.0%
TTGAGAGAGTTATATGGAAT+TGG - chr8_1:78093813-78093832 Msa1216370:intron 30.0%
TCTTATTCATCTTGGATTCA+GGG + chr8_1:78094179-78094198 None:intergenic 30.0%
TTCTTATTCATCTTGGATTC+AGG + chr8_1:78094180-78094199 None:intergenic 30.0%
TATCATTTGCATTGTAGATC+TGG - chr8_1:78094363-78094382 Msa1216370:five_prime_UTR 30.0%
ACGCCAAAGAAAAGATGAAA+AGG - chr8_1:78092130-78092149 Msa1216370:three_prime_UTR 35.0%
CGCCAAAGAAAAGATGAAAA+GGG - chr8_1:78092131-78092150 Msa1216370:three_prime_UTR 35.0%
AAAAGATGAAAAGGGAAGCA+AGG - chr8_1:78092139-78092158 Msa1216370:three_prime_UTR 35.0%
GGGAAGCAAGGATTAAAAAT+TGG - chr8_1:78092151-78092170 Msa1216370:three_prime_UTR 35.0%
AACTGAAAATTGGAACAGGA+TGG + chr8_1:78092239-78092258 None:intergenic 35.0%
ACTCAACTGAAAATTGGAAC+AGG + chr8_1:78092243-78092262 None:intergenic 35.0%
TCACTCACTCAACTGAAAAT+TGG + chr8_1:78092249-78092268 None:intergenic 35.0%
TAATAATAGTAAGGAGGTGG+TGG + chr8_1:78092357-78092376 None:intergenic 35.0%
GAGTAATAATAGTAAGGAGG+TGG + chr8_1:78092360-78092379 None:intergenic 35.0%
!! TTTGAGTAGTATTGATGAGG+AGG + chr8_1:78092444-78092463 None:intergenic 35.0%
!! CCATTTGAGTAGTATTGATG+AGG + chr8_1:78092447-78092466 None:intergenic 35.0%
CCTCATCAATACTACTCAAA+TGG - chr8_1:78092444-78092463 Msa1216370:CDS 35.0%
TGAACAACATCTACATCAAG+TGG + chr8_1:78092537-78092556 None:intergenic 35.0%
TTACCTTCTTTGCAGTTTCA+TGG + chr8_1:78092590-78092609 None:intergenic 35.0%
ATGAAACTGCAAAGAAGGTA+AGG - chr8_1:78092589-78092608 Msa1216370:intron 35.0%
CGAAAACAAAGGAAATCAAG+TGG + chr8_1:78092677-78092696 None:intergenic 35.0%
TTACTGCATGTTTGGTATCA+CGG - chr8_1:78092746-78092765 Msa1216370:CDS 35.0%
TTCACCATTGCGTAGTAATT+AGG - chr8_1:78092826-78092845 Msa1216370:CDS 35.0%
TTGCAATATATCCATCCACA+GGG + chr8_1:78092884-78092903 None:intergenic 35.0%
ATTGCAATATATCCATCCAC+AGG + chr8_1:78092885-78092904 None:intergenic 35.0%
ACATAGCGTCACATTATTGA+AGG - chr8_1:78093202-78093221 Msa1216370:intron 35.0%
TCGTATCTTGTATCTTTGTC+TGG - chr8_1:78093328-78093347 Msa1216370:intron 35.0%
CGTATCTTGTATCTTTGTCT+GGG - chr8_1:78093329-78093348 Msa1216370:intron 35.0%
ACATTGATGTTCTTCTTCTC+TGG + chr8_1:78093451-78093470 None:intergenic 35.0%
GAGAAGAAGAACATCAATGT+AGG - chr8_1:78093451-78093470 Msa1216370:intron 35.0%
ATATGTCTTCTTCAGGTGAA+GGG + chr8_1:78093608-78093627 None:intergenic 35.0%
AATATGTCTTCTTCAGGTGA+AGG + chr8_1:78093609-78093628 None:intergenic 35.0%
TTGAGTTATTTGCATGTGAG+GGG + chr8_1:78093706-78093725 None:intergenic 35.0%
CTTGAGTTATTTGCATGTGA+GGG + chr8_1:78093707-78093726 None:intergenic 35.0%
! GCAAATAACTCAAGCTGTTT+TGG - chr8_1:78093713-78093732 Msa1216370:intron 35.0%
AAGTGGTTAGGCAAATTCTA+TGG - chr8_1:78093769-78093788 Msa1216370:intron 35.0%
AATATGCATGACAGAACCAA+AGG - chr8_1:78093887-78093906 Msa1216370:CDS 35.0%
CTAGTAATGATACCATGTGT+CGG + chr8_1:78093932-78093951 None:intergenic 35.0%
AATCAAAATAGTGAAGTGGG+TGG + chr8_1:78094001-78094020 None:intergenic 35.0%
ATCTCTATCAGTTGCTCAAT+TGG + chr8_1:78094121-78094140 None:intergenic 35.0%
TCAGGGTAAAATGATGTCAT+TGG + chr8_1:78094162-78094181 None:intergenic 35.0%
CCTGTACAATATAAATGAGC+AGG + chr8_1:78094321-78094340 None:intergenic 35.0%
CCTGCTCATTTATATTGTAC+AGG - chr8_1:78094318-78094337 Msa1216370:five_prime_UTR 35.0%
TTTGCATTGTAGATCTGGTT+TGG - chr8_1:78094368-78094387 Msa1216370:five_prime_UTR 35.0%
ACGCCAAAGAAAAGATGAAA+AGG - chr8_1:78092130-78092149 Msa1216370:three_prime_UTR 35.0%
CGCCAAAGAAAAGATGAAAA+GGG - chr8_1:78092131-78092150 Msa1216370:three_prime_UTR 35.0%
AAAAGATGAAAAGGGAAGCA+AGG - chr8_1:78092139-78092158 Msa1216370:three_prime_UTR 35.0%
GGGAAGCAAGGATTAAAAAT+TGG - chr8_1:78092151-78092170 Msa1216370:three_prime_UTR 35.0%
AACTGAAAATTGGAACAGGA+TGG + chr8_1:78092239-78092258 None:intergenic 35.0%
ACTCAACTGAAAATTGGAAC+AGG + chr8_1:78092243-78092262 None:intergenic 35.0%
TCACTCACTCAACTGAAAAT+TGG + chr8_1:78092249-78092268 None:intergenic 35.0%
TAATAATAGTAAGGAGGTGG+TGG + chr8_1:78092357-78092376 None:intergenic 35.0%
GAGTAATAATAGTAAGGAGG+TGG + chr8_1:78092360-78092379 None:intergenic 35.0%
!! TTTGAGTAGTATTGATGAGG+AGG + chr8_1:78092444-78092463 None:intergenic 35.0%
!! CCATTTGAGTAGTATTGATG+AGG + chr8_1:78092447-78092466 None:intergenic 35.0%
CCTCATCAATACTACTCAAA+TGG - chr8_1:78092444-78092463 Msa1216370:CDS 35.0%
TGAACAACATCTACATCAAG+TGG + chr8_1:78092537-78092556 None:intergenic 35.0%
TTACCTTCTTTGCAGTTTCA+TGG + chr8_1:78092590-78092609 None:intergenic 35.0%
ATGAAACTGCAAAGAAGGTA+AGG - chr8_1:78092589-78092608 Msa1216370:intron 35.0%
CGAAAACAAAGGAAATCAAG+TGG + chr8_1:78092677-78092696 None:intergenic 35.0%
TTACTGCATGTTTGGTATCA+CGG - chr8_1:78092746-78092765 Msa1216370:CDS 35.0%
TTCACCATTGCGTAGTAATT+AGG - chr8_1:78092826-78092845 Msa1216370:CDS 35.0%
TTGCAATATATCCATCCACA+GGG + chr8_1:78092884-78092903 None:intergenic 35.0%
ATTGCAATATATCCATCCAC+AGG + chr8_1:78092885-78092904 None:intergenic 35.0%
ACATAGCGTCACATTATTGA+AGG - chr8_1:78093202-78093221 Msa1216370:intron 35.0%
TCGTATCTTGTATCTTTGTC+TGG - chr8_1:78093328-78093347 Msa1216370:intron 35.0%
CGTATCTTGTATCTTTGTCT+GGG - chr8_1:78093329-78093348 Msa1216370:intron 35.0%
ACATTGATGTTCTTCTTCTC+TGG + chr8_1:78093451-78093470 None:intergenic 35.0%
GAGAAGAAGAACATCAATGT+AGG - chr8_1:78093451-78093470 Msa1216370:intron 35.0%
ATATGTCTTCTTCAGGTGAA+GGG + chr8_1:78093608-78093627 None:intergenic 35.0%
AATATGTCTTCTTCAGGTGA+AGG + chr8_1:78093609-78093628 None:intergenic 35.0%
TTGAGTTATTTGCATGTGAG+GGG + chr8_1:78093706-78093725 None:intergenic 35.0%
CTTGAGTTATTTGCATGTGA+GGG + chr8_1:78093707-78093726 None:intergenic 35.0%
! GCAAATAACTCAAGCTGTTT+TGG - chr8_1:78093713-78093732 Msa1216370:intron 35.0%
AAGTGGTTAGGCAAATTCTA+TGG - chr8_1:78093769-78093788 Msa1216370:intron 35.0%
AATATGCATGACAGAACCAA+AGG - chr8_1:78093887-78093906 Msa1216370:CDS 35.0%
CTAGTAATGATACCATGTGT+CGG + chr8_1:78093932-78093951 None:intergenic 35.0%
AATCAAAATAGTGAAGTGGG+TGG + chr8_1:78094001-78094020 None:intergenic 35.0%
ATCTCTATCAGTTGCTCAAT+TGG + chr8_1:78094121-78094140 None:intergenic 35.0%
TCAGGGTAAAATGATGTCAT+TGG + chr8_1:78094162-78094181 None:intergenic 35.0%
CCTGTACAATATAAATGAGC+AGG + chr8_1:78094321-78094340 None:intergenic 35.0%
CCTGCTCATTTATATTGTAC+AGG - chr8_1:78094318-78094337 Msa1216370:five_prime_UTR 35.0%
TTTGCATTGTAGATCTGGTT+TGG - chr8_1:78094368-78094387 Msa1216370:five_prime_UTR 35.0%
!! GTGGTGTTGTATTGTGTTAG+TGG - chr8_1:78092177-78092196 Msa1216370:three_prime_UTR 40.0%
! TTGTTGTTGCATAGAAAGGG+TGG + chr8_1:78092506-78092525 None:intergenic 40.0%
AAGTGGTGATCAGGATTGTT+GGG + chr8_1:78092660-78092679 None:intergenic 40.0%
AAGGAAATCAAGTGGTGATC+AGG + chr8_1:78092669-78092688 None:intergenic 40.0%
!! ATAGAGGGCATCGAAAACAA+AGG + chr8_1:78092688-78092707 None:intergenic 40.0%
TCTTAATTAAAAGGGCCCTG+TGG - chr8_1:78092866-78092885 Msa1216370:CDS 40.0%
TTGAAAGTAGTAGCATGTGC+CGG + chr8_1:78093262-78093281 None:intergenic 40.0%
TCAAATGCTTCGGGAAATAG+AGG + chr8_1:78093483-78093502 None:intergenic 40.0%
TTCCCATTCCAGAAAGGAAT+TGG - chr8_1:78093513-78093532 Msa1216370:intron 40.0%
!! ATTTCTGGCCAATTCCTTTC+TGG + chr8_1:78093524-78093543 None:intergenic 40.0%
CTGATGGCTGACAAAATTTC+TGG + chr8_1:78093539-78093558 None:intergenic 40.0%
! CAGAAATTTTGTCAGCCATC+AGG - chr8_1:78093537-78093556 Msa1216370:intron 40.0%
AAGTCAATACCTGTTCCTGA+TGG + chr8_1:78093555-78093574 None:intergenic 40.0%
!! TCAGGAACAGGTATTGACTT+AGG - chr8_1:78093555-78093574 Msa1216370:intron 40.0%
AGGGGAAATATGTCTTCTTC+AGG + chr8_1:78093615-78093634 None:intergenic 40.0%
TGATTCAGCGCATATTACGA+GGG + chr8_1:78093634-78093653 None:intergenic 40.0%
TTGATTCAGCGCATATTACG+AGG + chr8_1:78093635-78093654 None:intergenic 40.0%
! GGAGTATCATGATCTTCCAA+AGG + chr8_1:78093660-78093679 None:intergenic 40.0%
GCTTGAGTTATTTGCATGTG+AGG + chr8_1:78093708-78093727 None:intergenic 40.0%
TTGGAGAAAAACAGTGACAC+TGG - chr8_1:78093732-78093751 Msa1216370:intron 40.0%
CTAACCACTTTAACCTGGAA+AGG + chr8_1:78093759-78093778 None:intergenic 40.0%
CTTTCCAGGTTAAAGTGGTT+AGG - chr8_1:78093757-78093776 Msa1216370:intron 40.0%
TTTGCCTAACCACTTTAACC+TGG + chr8_1:78093764-78093783 None:intergenic 40.0%
GGATCATTACGATCGAAATC+AGG + chr8_1:78093852-78093871 None:intergenic 40.0%
GATTTCGATCGTAATGATCC+TGG - chr8_1:78093852-78093871 Msa1216370:CDS 40.0%
CATATTACACACTCCTTTCC+AGG + chr8_1:78093873-78093892 None:intergenic 40.0%
CTATCAGTTGCTCAATTGGT+TGG + chr8_1:78094117-78094136 None:intergenic 40.0%
!! GTGGTGTTGTATTGTGTTAG+TGG - chr8_1:78092177-78092196 Msa1216370:three_prime_UTR 40.0%
! TTGTTGTTGCATAGAAAGGG+TGG + chr8_1:78092506-78092525 None:intergenic 40.0%
AAGTGGTGATCAGGATTGTT+GGG + chr8_1:78092660-78092679 None:intergenic 40.0%
AAGGAAATCAAGTGGTGATC+AGG + chr8_1:78092669-78092688 None:intergenic 40.0%
!! ATAGAGGGCATCGAAAACAA+AGG + chr8_1:78092688-78092707 None:intergenic 40.0%
TCTTAATTAAAAGGGCCCTG+TGG - chr8_1:78092866-78092885 Msa1216370:CDS 40.0%
TTGAAAGTAGTAGCATGTGC+CGG + chr8_1:78093262-78093281 None:intergenic 40.0%
TCAAATGCTTCGGGAAATAG+AGG + chr8_1:78093483-78093502 None:intergenic 40.0%
TTCCCATTCCAGAAAGGAAT+TGG - chr8_1:78093513-78093532 Msa1216370:intron 40.0%
!! ATTTCTGGCCAATTCCTTTC+TGG + chr8_1:78093524-78093543 None:intergenic 40.0%
CTGATGGCTGACAAAATTTC+TGG + chr8_1:78093539-78093558 None:intergenic 40.0%
! CAGAAATTTTGTCAGCCATC+AGG - chr8_1:78093537-78093556 Msa1216370:intron 40.0%
AAGTCAATACCTGTTCCTGA+TGG + chr8_1:78093555-78093574 None:intergenic 40.0%
!! TCAGGAACAGGTATTGACTT+AGG - chr8_1:78093555-78093574 Msa1216370:intron 40.0%
AGGGGAAATATGTCTTCTTC+AGG + chr8_1:78093615-78093634 None:intergenic 40.0%
TGATTCAGCGCATATTACGA+GGG + chr8_1:78093634-78093653 None:intergenic 40.0%
TTGATTCAGCGCATATTACG+AGG + chr8_1:78093635-78093654 None:intergenic 40.0%
! GGAGTATCATGATCTTCCAA+AGG + chr8_1:78093660-78093679 None:intergenic 40.0%
GCTTGAGTTATTTGCATGTG+AGG + chr8_1:78093708-78093727 None:intergenic 40.0%
TTGGAGAAAAACAGTGACAC+TGG - chr8_1:78093732-78093751 Msa1216370:intron 40.0%
CTAACCACTTTAACCTGGAA+AGG + chr8_1:78093759-78093778 None:intergenic 40.0%
CTTTCCAGGTTAAAGTGGTT+AGG - chr8_1:78093757-78093776 Msa1216370:intron 40.0%
TTTGCCTAACCACTTTAACC+TGG + chr8_1:78093764-78093783 None:intergenic 40.0%
GGATCATTACGATCGAAATC+AGG + chr8_1:78093852-78093871 None:intergenic 40.0%
GATTTCGATCGTAATGATCC+TGG - chr8_1:78093852-78093871 Msa1216370:CDS 40.0%
CATATTACACACTCCTTTCC+AGG + chr8_1:78093873-78093892 None:intergenic 40.0%
CTATCAGTTGCTCAATTGGT+TGG + chr8_1:78094117-78094136 None:intergenic 40.0%
TTGAGTGAGTGAGTGTGAGA+TGG - chr8_1:78092257-78092276 Msa1216370:three_prime_UTR 45.0%
TGAGTGAGTGAGTGTGAGAT+GGG - chr8_1:78092258-78092277 Msa1216370:three_prime_UTR 45.0%
!! TAGTATTGATGAGGAGGAGG+AGG + chr8_1:78092438-78092457 None:intergenic 45.0%
!! GAGTAGTATTGATGAGGAGG+AGG + chr8_1:78092441-78092460 None:intergenic 45.0%
TGGCCATGAAACTGCAAAGA+AGG - chr8_1:78092584-78092603 Msa1216370:intron 45.0%
CAAGTGGTGATCAGGATTGT+TGG + chr8_1:78092661-78092680 None:intergenic 45.0%
AATTAAAAGGGCCCTGTGGA+TGG - chr8_1:78092870-78092889 Msa1216370:CDS 45.0%
CTGGGACAGTGTTTCATTGA+TGG - chr8_1:78093347-78093366 Msa1216370:intron 45.0%
!! TTCTGGAATGGGAACGTGAT+CGG + chr8_1:78093507-78093526 None:intergenic 45.0%
ATCACGTTCCCATTCCAGAA+AGG - chr8_1:78093507-78093526 Msa1216370:intron 45.0%
!! GGCCAATTCCTTTCTGGAAT+GGG + chr8_1:78093518-78093537 None:intergenic 45.0%
! TGGCCAATTCCTTTCTGGAA+TGG + chr8_1:78093519-78093538 None:intergenic 45.0%
! TTTTGTCAGCCATCAGGAAC+AGG - chr8_1:78093543-78093562 Msa1216370:intron 45.0%
GATTCAGCGCATATTACGAG+GGG + chr8_1:78093633-78093652 None:intergenic 45.0%
GCATCTACTAAGGAACTGAC+AGG + chr8_1:78093681-78093700 None:intergenic 45.0%
TGGTCCTTTCCAGGTTAAAG+TGG - chr8_1:78093752-78093771 Msa1216370:intron 45.0%
CGATCGTAATGATCCTGGAA+AGG - chr8_1:78093857-78093876 Msa1216370:CDS 45.0%
GGTAAGACAGCAGTATCCTT+TGG + chr8_1:78093906-78093925 None:intergenic 45.0%
! AATGATACCATGTGTCGGCA+AGG + chr8_1:78093927-78093946 None:intergenic 45.0%
CAATTGGTTGGCGGCATATA+GGG + chr8_1:78094105-78094124 None:intergenic 45.0%
TCAATTGGTTGGCGGCATAT+AGG + chr8_1:78094106-78094125 None:intergenic 45.0%
TCAGTTGCTCAATTGGTTGG+CGG + chr8_1:78094114-78094133 None:intergenic 45.0%
TTGAGTGAGTGAGTGTGAGA+TGG - chr8_1:78092257-78092276 Msa1216370:three_prime_UTR 45.0%
TGAGTGAGTGAGTGTGAGAT+GGG - chr8_1:78092258-78092277 Msa1216370:three_prime_UTR 45.0%
!! TAGTATTGATGAGGAGGAGG+AGG + chr8_1:78092438-78092457 None:intergenic 45.0%
!! GAGTAGTATTGATGAGGAGG+AGG + chr8_1:78092441-78092460 None:intergenic 45.0%
TGGCCATGAAACTGCAAAGA+AGG - chr8_1:78092584-78092603 Msa1216370:intron 45.0%
CAAGTGGTGATCAGGATTGT+TGG + chr8_1:78092661-78092680 None:intergenic 45.0%
AATTAAAAGGGCCCTGTGGA+TGG - chr8_1:78092870-78092889 Msa1216370:CDS 45.0%
CTGGGACAGTGTTTCATTGA+TGG - chr8_1:78093347-78093366 Msa1216370:intron 45.0%
!! TTCTGGAATGGGAACGTGAT+CGG + chr8_1:78093507-78093526 None:intergenic 45.0%
ATCACGTTCCCATTCCAGAA+AGG - chr8_1:78093507-78093526 Msa1216370:intron 45.0%
!! GGCCAATTCCTTTCTGGAAT+GGG + chr8_1:78093518-78093537 None:intergenic 45.0%
! TGGCCAATTCCTTTCTGGAA+TGG + chr8_1:78093519-78093538 None:intergenic 45.0%
! TTTTGTCAGCCATCAGGAAC+AGG - chr8_1:78093543-78093562 Msa1216370:intron 45.0%
GATTCAGCGCATATTACGAG+GGG + chr8_1:78093633-78093652 None:intergenic 45.0%
GCATCTACTAAGGAACTGAC+AGG + chr8_1:78093681-78093700 None:intergenic 45.0%
TGGTCCTTTCCAGGTTAAAG+TGG - chr8_1:78093752-78093771 Msa1216370:intron 45.0%
CGATCGTAATGATCCTGGAA+AGG - chr8_1:78093857-78093876 Msa1216370:CDS 45.0%
GGTAAGACAGCAGTATCCTT+TGG + chr8_1:78093906-78093925 None:intergenic 45.0%
! AATGATACCATGTGTCGGCA+AGG + chr8_1:78093927-78093946 None:intergenic 45.0%
CAATTGGTTGGCGGCATATA+GGG + chr8_1:78094105-78094124 None:intergenic 45.0%
TCAATTGGTTGGCGGCATAT+AGG + chr8_1:78094106-78094125 None:intergenic 45.0%
TCAGTTGCTCAATTGGTTGG+CGG + chr8_1:78094114-78094133 None:intergenic 45.0%
!! TTTCAAATAAATAAAAAAAA+CGG + chr8_1:78093023-78093042 None:intergenic 5.0%
!! TTTCAAATAAATAAAAAAAA+CGG + chr8_1:78093023-78093042 None:intergenic 5.0%
AGTGTGAGATGGGTGGTTCA+TGG - chr8_1:78092268-78092287 Msa1216370:three_prime_UTR 50.0%
!! GAGGTGGTGGATAGTGTTCA+TGG + chr8_1:78092344-78092363 None:intergenic 50.0%
AAGTAACCTTGAGGAGGCTG+TGG + chr8_1:78092411-78092430 None:intergenic 50.0%
ATTGATGAGGAGGAGGAGGA+GGG + chr8_1:78092434-78092453 None:intergenic 50.0%
TATTGATGAGGAGGAGGAGG+AGG + chr8_1:78092435-78092454 None:intergenic 50.0%
GTTGCATAGAAAGGGTGGTG+AGG + chr8_1:78092501-78092520 None:intergenic 50.0%
GTTTCATGGCCAGTGTATGG+AGG + chr8_1:78092576-78092595 None:intergenic 50.0%
GCAGTTTCATGGCCAGTGTA+TGG + chr8_1:78092579-78092598 None:intergenic 50.0%
ACACACTCTGCAGCTTTACC+AGG - chr8_1:78092632-78092651 Msa1216370:CDS 50.0%
GATCAGGATTGTTGGGATCC+TGG + chr8_1:78092653-78092672 None:intergenic 50.0%
! GTTTTCGATGCCCTCTATCC+TGG - chr8_1:78092690-78092709 Msa1216370:CDS 50.0%
CGTGTTCTGTGTATGACACG+TGG - chr8_1:78093225-78093244 Msa1216370:intron 50.0%
! GTGATCGGCTCAAATGCTTC+GGG + chr8_1:78093492-78093511 None:intergenic 50.0%
! CGTGATCGGCTCAAATGCTT+CGG + chr8_1:78093493-78093512 None:intergenic 50.0%
ATGCGCTGAATCAACGCCTT+TGG - chr8_1:78093641-78093660 Msa1216370:intron 50.0%
GTGAGGGGATGCATCTACTA+AGG + chr8_1:78093691-78093710 None:intergenic 50.0%
TGTCTTACCTTGCCGACACA+TGG - chr8_1:78093917-78093936 Msa1216370:CDS 50.0%
GCGAGTGTGCAAAAGCTTTG+CGG - chr8_1:78094062-78094081 Msa1216370:CDS 50.0%
CGAGTGTGCAAAAGCTTTGC+GGG - chr8_1:78094063-78094082 Msa1216370:CDS 50.0%
AGTGTGAGATGGGTGGTTCA+TGG - chr8_1:78092268-78092287 Msa1216370:three_prime_UTR 50.0%
!! GAGGTGGTGGATAGTGTTCA+TGG + chr8_1:78092344-78092363 None:intergenic 50.0%
AAGTAACCTTGAGGAGGCTG+TGG + chr8_1:78092411-78092430 None:intergenic 50.0%
ATTGATGAGGAGGAGGAGGA+GGG + chr8_1:78092434-78092453 None:intergenic 50.0%
TATTGATGAGGAGGAGGAGG+AGG + chr8_1:78092435-78092454 None:intergenic 50.0%
GTTGCATAGAAAGGGTGGTG+AGG + chr8_1:78092501-78092520 None:intergenic 50.0%
GTTTCATGGCCAGTGTATGG+AGG + chr8_1:78092576-78092595 None:intergenic 50.0%
GCAGTTTCATGGCCAGTGTA+TGG + chr8_1:78092579-78092598 None:intergenic 50.0%
ACACACTCTGCAGCTTTACC+AGG - chr8_1:78092632-78092651 Msa1216370:CDS 50.0%
GATCAGGATTGTTGGGATCC+TGG + chr8_1:78092653-78092672 None:intergenic 50.0%
! GTTTTCGATGCCCTCTATCC+TGG - chr8_1:78092690-78092709 Msa1216370:CDS 50.0%
CGTGTTCTGTGTATGACACG+TGG - chr8_1:78093225-78093244 Msa1216370:intron 50.0%
! GTGATCGGCTCAAATGCTTC+GGG + chr8_1:78093492-78093511 None:intergenic 50.0%
! CGTGATCGGCTCAAATGCTT+CGG + chr8_1:78093493-78093512 None:intergenic 50.0%
ATGCGCTGAATCAACGCCTT+TGG - chr8_1:78093641-78093660 Msa1216370:intron 50.0%
GTGAGGGGATGCATCTACTA+AGG + chr8_1:78093691-78093710 None:intergenic 50.0%
TGTCTTACCTTGCCGACACA+TGG - chr8_1:78093917-78093936 Msa1216370:CDS 50.0%
GCGAGTGTGCAAAAGCTTTG+CGG - chr8_1:78094062-78094081 Msa1216370:CDS 50.0%
CGAGTGTGCAAAAGCTTTGC+GGG - chr8_1:78094063-78094082 Msa1216370:CDS 50.0%
GTGAGTGAGTGTGAGATGGG+TGG - chr8_1:78092261-78092280 Msa1216370:three_prime_UTR 55.0%
GGAGGGAAGTAACCTTGAGG+AGG + chr8_1:78092417-78092436 None:intergenic 55.0%
GGAGGAGGGAAGTAACCTTG+AGG + chr8_1:78092420-78092439 None:intergenic 55.0%
TGAGGCAGCATGGAATTGGC+AGG + chr8_1:78092477-78092496 None:intergenic 55.0%
AGGCTGAGGCAGCATGGAAT+TGG + chr8_1:78092481-78092500 None:intergenic 55.0%
TAGAAAGGGTGGTGAGGCTG+AGG + chr8_1:78092495-78092514 None:intergenic 55.0%
TCATGGCCAGTGTATGGAGG+TGG + chr8_1:78092573-78092592 None:intergenic 55.0%
GACGAACCTGCCAGGATAGA+GGG + chr8_1:78092703-78092722 None:intergenic 55.0%
AGACGAACCTGCCAGGATAG+AGG + chr8_1:78092704-78092723 None:intergenic 55.0%
! CGTTGATAGACGAACCTGCC+AGG + chr8_1:78092711-78092730 None:intergenic 55.0%
!! ACACGTGGTAGTGTCGACAC+CGG - chr8_1:78093240-78093259 Msa1216370:intron 55.0%
CAGTGACACTGGTCCTTTCC+AGG - chr8_1:78093743-78093762 Msa1216370:intron 55.0%
GTGAGTGAGTGTGAGATGGG+TGG - chr8_1:78092261-78092280 Msa1216370:three_prime_UTR 55.0%
GGAGGGAAGTAACCTTGAGG+AGG + chr8_1:78092417-78092436 None:intergenic 55.0%
GGAGGAGGGAAGTAACCTTG+AGG + chr8_1:78092420-78092439 None:intergenic 55.0%
TGAGGCAGCATGGAATTGGC+AGG + chr8_1:78092477-78092496 None:intergenic 55.0%
AGGCTGAGGCAGCATGGAAT+TGG + chr8_1:78092481-78092500 None:intergenic 55.0%
TAGAAAGGGTGGTGAGGCTG+AGG + chr8_1:78092495-78092514 None:intergenic 55.0%
TCATGGCCAGTGTATGGAGG+TGG + chr8_1:78092573-78092592 None:intergenic 55.0%
GACGAACCTGCCAGGATAGA+GGG + chr8_1:78092703-78092722 None:intergenic 55.0%
AGACGAACCTGCCAGGATAG+AGG + chr8_1:78092704-78092723 None:intergenic 55.0%
! CGTTGATAGACGAACCTGCC+AGG + chr8_1:78092711-78092730 None:intergenic 55.0%
!! ACACGTGGTAGTGTCGACAC+CGG - chr8_1:78093240-78093259 Msa1216370:intron 55.0%
CAGTGACACTGGTCCTTTCC+AGG - chr8_1:78093743-78093762 Msa1216370:intron 55.0%
! CCAGTGTATGGAGGTGGTGG+TGG + chr8_1:78092567-78092586 None:intergenic 60.0%
CCACCACCACCTCCATACAC+TGG - chr8_1:78092564-78092583 Msa1216370:intron 60.0%
TGGCCAGTGTATGGAGGTGG+TGG + chr8_1:78092570-78092589 None:intergenic 60.0%
TCGATGCCCTCTATCCTGGC+AGG - chr8_1:78092694-78092713 Msa1216370:CDS 60.0%
! CCAGTGTATGGAGGTGGTGG+TGG + chr8_1:78092567-78092586 None:intergenic 60.0%
CCACCACCACCTCCATACAC+TGG - chr8_1:78092564-78092583 Msa1216370:intron 60.0%
TGGCCAGTGTATGGAGGTGG+TGG + chr8_1:78092570-78092589 None:intergenic 60.0%
TCGATGCCCTCTATCCTGGC+AGG - chr8_1:78092694-78092713 Msa1216370:CDS 60.0%
GGCTGTGGCATCAGAGGCTG+AGG + chr8_1:78092390-78092409 None:intergenic 65.0%
GGCTGTGGCTGTGGCATCAG+AGG + chr8_1:78092396-78092415 None:intergenic 65.0%
CCTTGAGGAGGCTGTGGCTG+TGG + chr8_1:78092405-78092424 None:intergenic 65.0%
CCACAGCCACAGCCTCCTCA+AGG - chr8_1:78092402-78092421 Msa1216370:CDS 65.0%
GTGGTGAGGCTGAGGCAGCA+TGG + chr8_1:78092487-78092506 None:intergenic 65.0%
GGCTGTGGCATCAGAGGCTG+AGG + chr8_1:78092390-78092409 None:intergenic 65.0%
GGCTGTGGCTGTGGCATCAG+AGG + chr8_1:78092396-78092415 None:intergenic 65.0%
CCTTGAGGAGGCTGTGGCTG+TGG + chr8_1:78092405-78092424 None:intergenic 65.0%
CCACAGCCACAGCCTCCTCA+AGG - chr8_1:78092402-78092421 Msa1216370:CDS 65.0%
GTGGTGAGGCTGAGGCAGCA+TGG + chr8_1:78092487-78092506 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 78092110 78094421 78092110 ID=Msa1216370;Name=Msa1216370
chr8_1 mRNA 78092110 78094421 78092110 ID=Msa1216370-mRNA-1;Parent=Msa1216370;Name=Msa1216370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=166|1|1|1|0.5|0.66|3|256|354
chr8_1 exon 78092110 78092479 78092110 ID=Msa1216370-mRNA-1:exon:27008;Parent=Msa1216370-mRNA-1
chr8_1 exon 78092593 78093103 78092593 ID=Msa1216370-mRNA-1:exon:27007;Parent=Msa1216370-mRNA-1
chr8_1 exon 78093816 78094421 78093816 ID=Msa1216370-mRNA-1:exon:27006;Parent=Msa1216370-mRNA-1
chr8_1 five_prime_UTR 78094256 78094421 78094256 ID=Msa1216370-mRNA-1:five_prime_utr;Parent=Msa1216370-mRNA-1
chr8_1 CDS 78093816 78094255 78093816 ID=Msa1216370-mRNA-1:cds;Parent=Msa1216370-mRNA-1
chr8_1 CDS 78092593 78093103 78092593 ID=Msa1216370-mRNA-1:cds;Parent=Msa1216370-mRNA-1
chr8_1 CDS 78092366 78092479 78092366 ID=Msa1216370-mRNA-1:cds;Parent=Msa1216370-mRNA-1
chr8_1 three_prime_UTR 78092110 78092365 78092110 ID=Msa1216370-mRNA-1:three_prime_utr;Parent=Msa1216370-mRNA-1
Gene Sequence

>Msa1216370

ATGGGTGGTTCATGGAGTAATAATAACAGTAATAACAGAAACATAAGTAGAAGAAGACATAGTTACCATGAACACTATCCACCACCTCCTTACTATTATTACTCTTCTCAGCCTCAGCCTCTGATGCCACAGCCACAGCCTCCTCAAGGTTACTTCCCTCCTCCTCCTCCTCATCAATACTACTCAAATGGATACACTCCTGCCAATTCCATGCTGCCTCAGCCTCACCACCCTTTCTATGCAACAACAAATACTCAACCACTTGATGTAGATGTTGTTCAAGCACTTCCACCACCACCTCCATACACTGGCCATGAAACTGCAAAGAAGGTAAGGAATGATGTGAACTTGCATAAACACACTCTGCAGCTTTACCAGGATCCCAACAATCCTGATCACCACTTGATTTCCTTTGTTTTCGATGCCCTCTATCCTGGCAGAATTACGATCTTCTACTTAGCCAGAGAAGAAGAACATCAATGTAGGTTTGTTCCTCTATTTCCCGAAGCATTTGAGCCGATCACGTTCCCATTCCAGAAAGGAATTGGCCAGAAATTTTGTCAGCCATCAGGAACAGGTATTGACTTAGGTTTCTTTGATTTGGATGATCTTTCAAACCCTTCACCTGAAGAAGACATATTTCCCCTCGTAATATGCGCTGAATCAACGCCTTTGGAAGATCATGATACTCCTGTCAGTTCCTTAGTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTTTTGGAGAAAAACAGTGACACTGGTCCTTTCCAGGTTAAAGTGGTTAGGCAAATTCTATGGATCGATCAAGTTCGTTATGAGTTGAGAGAGTTATATGGAATTGGTAACTCAACAGCACCTGATTTCGATCGTAATGATCCTGGAAAGGAGTGTGTAATATGCATGACAGAACCAAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGCGAGTGTGCAAAAGCTTTGCGGGTTCAATCAAACAATTGCCCTATATGCCGCCAACCAATTGAGCAACTGATAGAGATCAAGATAAACAATGATGACCAATGA
Protein sequence

>Msa1216370

MGGSWSNNNSNNRNISRRRHSYHEHYPPPPYYYYSSQPQPLMPQPQPPQGYFPPPPPHQYYSNGYTPANSMLPQPHHPFYATTNTQPLDVDVVQALPPPPPYTGHETAKKVRNDVNLHKHTLQLYQDPNNPDHHLISFVFDALYPGRITIFYLAREEEHQCRFVPLFPEAFEPITFPFQKGIGQKFCQPSGTGIDLGFFDLDDLSNPSPEEDIFPLVICAESTPLEDHDTPVSSLVDASPHMQITQAVLEKNSDTGPFQVKVVRQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRVQSNNCPICRQPIEQLIEIKINNDDQ*