AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795690 MtrunA17_Chr5g0398651 93.966 116 7 0 1 116 1 116 9.08e-77 222
Msa0795690 MtrunA17_Chr4g0056791 62.385 109 36 1 5 113 41 144 6.96e-40 130
Msa0795690 MtrunA17_Chr2g0320881 53.125 96 45 0 20 115 51 146 7.09e-27 98.6
Msa0795690 MtrunA17_Chr4g0027171 50.562 89 44 0 24 112 67 155 6.46e-26 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795690 AT2G27830.1 52.128 94 45 0 19 112 61 154 1.09e-30 108

Find 70 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGCAACTAAATATAATT+TGG 0.142333 5_3:+7715628 None:intergenic
AAGATATTATTCACACTTAT+TGG 0.154119 5_3:-7715927 Msa0795690:three_prime_UTR
ATCCAAACTCTCTTTGTCTT+TGG 0.236659 5_3:-7716611 Msa0795690:five_prime_UTR
TCTCTTTGTCTTTGGCTTCA+TGG 0.240774 5_3:-7716603 Msa0795690:exon
ACATCAAAACCTCACTGTTT+AGG 0.276948 5_3:-7716863 Msa0795690:five_prime_UTR
AATCACTTTAGCATTAATTA+TGG 0.277764 5_3:+7715897 None:intergenic
CTCTTTGTCTTTGGCTTCAT+GGG 0.284185 5_3:-7716602 Msa0795690:exon
CAGGTCACTGCTGGAAAATT+CGG 0.287630 5_3:-7716819 Msa0795690:five_prime_UTR
AATGAGTGAAGGAAGCTTCT+AGG 0.300519 5_3:+7716732 None:intergenic
CATCAAAACCTCACTGTTTA+GGG 0.313886 5_3:-7716862 Msa0795690:five_prime_UTR
AGCCAAAGACAAAGAGAGTT+TGG 0.330320 5_3:+7716609 None:intergenic
TATCCTTTACATGTTGCATA+AGG 0.355932 5_3:+7715609 None:intergenic
ATGTATCTTGTGAAAGGTTA+AGG 0.390025 5_3:-7715815 Msa0795690:three_prime_UTR
AGGGCAACTAAATATAATTT+GGG 0.412005 5_3:+7715629 None:intergenic
ATTATTTGTCAGGTCACTGC+TGG 0.415487 5_3:-7716828 Msa0795690:five_prime_UTR
TGCATTGATGACTTATGATA+AGG 0.419305 5_3:-7716408 Msa0795690:CDS
AACGGAAATTTGTCAGTTTG+AGG 0.425120 5_3:+7716563 None:intergenic
TAGTGAGAAATTGAAGAACT+TGG 0.435583 5_3:-7716040 Msa0795690:CDS
TGAGTAGTATGAGGTAGTTT+AGG 0.435990 5_3:-7715655 Msa0795690:three_prime_UTR
TAATTACTTTCAAGCGTGAA+TGG 0.437696 5_3:+7716326 None:intergenic
TGATGAGGCTATTATTTGTC+AGG 0.438001 5_3:-7716838 Msa0795690:five_prime_UTR
AGAGTTTGGATTTCAGTTTA+CGG 0.441806 5_3:+7716623 None:intergenic
ATGAAATGGTGCAGGTTTGA+AGG 0.447179 5_3:-7716064 Msa0795690:intron
ATCCTTTACATGTTGCATAA+GGG 0.449046 5_3:+7715610 None:intergenic
GGATCGGTGTCCTTCAATAA+TGG 0.452970 5_3:+7716374 None:intergenic
GTGACTGATTGAATCTCAAT+TGG 0.460220 5_3:-7715868 Msa0795690:three_prime_UTR
AAGTGAAGTTGGTAGCGGTT+TGG 0.461676 5_3:+7716353 None:intergenic
TGCCCTTATGCAACATGTAA+AGG 0.473630 5_3:-7715612 Msa0795690:three_prime_UTR
TGAACTTCCAAGGCAGCATA+TGG 0.474963 5_3:-7715976 Msa0795690:three_prime_UTR
AGTGAGAAATTGAAGAACTT+GGG 0.475992 5_3:-7716039 Msa0795690:CDS
AAGGGTGAAATTTGAGTTTG+TGG 0.476387 5_3:+7716702 None:intergenic
TGAATGGAGAGAAGTGAAGT+TGG 0.482669 5_3:+7716342 None:intergenic
TTGGAAGTTCAGATTGAAGT+AGG 0.484151 5_3:+7715988 None:intergenic
AATTAATGCTAAAGTGATTG+AGG 0.488321 5_3:-7715893 Msa0795690:three_prime_UTR
GAAGAGAAGGCCATTATTGA+AGG 0.491115 5_3:-7716384 Msa0795690:CDS
AGGTCACTGCTGGAAAATTC+GGG 0.491361 5_3:-7716818 Msa0795690:five_prime_UTR
ATATTTCGATTTGTAGAGGT+TGG 0.493266 5_3:+7716774 None:intergenic
AGGGTGAAATTTGAGTTTGT+GGG 0.494506 5_3:+7716703 None:intergenic
AATTGAAGAACTTGGGGTCA+AGG 0.499762 5_3:-7716032 Msa0795690:CDS
TCAATTGCCATATGCTGCCT+TGG 0.502902 5_3:+7715969 None:intergenic
TGGTCTAAGAGGAGAGTCAT+TGG 0.503838 5_3:+7716526 None:intergenic
TGTTGTTGTTGTTACGAGAA+AGG 0.503927 5_3:+7716660 None:intergenic
AAATTTATGAATCGTCAAGC+TGG 0.516087 5_3:-7715687 Msa0795690:three_prime_UTR
AATCTTATGTATCTTGTGAA+AGG 0.518070 5_3:-7715821 Msa0795690:three_prime_UTR
AGAAGTTTCGATGGTCTAAG+AGG 0.521243 5_3:+7716515 None:intergenic
GAGAGAAGTGAAGTTGGTAG+CGG 0.523441 5_3:+7716348 None:intergenic
CGAAGCTATTGAGTAGTATG+AGG 0.524961 5_3:-7715664 Msa0795690:three_prime_UTR
TTTGTCTTTGGCTTCATGGG+TGG 0.526303 5_3:-7716599 Msa0795690:exon
TCAAACTGACAAATTTCCGT+TGG 0.528724 5_3:-7716561 Msa0795690:CDS
GTCAGTTTGAGGAGTAGAAA+CGG 0.529246 5_3:+7716574 None:intergenic
GTGTCCATCGAGAACACGTT+GGG 0.537604 5_3:-7716485 Msa0795690:CDS
CAAATTTCCGTTGGATACAA+CGG 0.549881 5_3:-7716552 Msa0795690:CDS
TTGGTTTCCGTTGTATCCAA+CGG 0.551596 5_3:+7716545 None:intergenic
TACCGTTGGCGAATTAGTGA+AGG 0.567706 5_3:-7716432 Msa0795690:CDS
GGGTGAAATTTGAGTTTGTG+GGG 0.570497 5_3:+7716704 None:intergenic
ACTTATATTTCGATTTGTAG+AGG 0.579774 5_3:+7716770 None:intergenic
GTGAGAAATTGAAGAACTTG+GGG 0.585031 5_3:-7716038 Msa0795690:CDS
CTTATGATAAGGAGAAGAGA+AGG 0.588206 5_3:-7716397 Msa0795690:CDS
AAGTTGGTAGCGGTTTGGAT+CGG 0.590772 5_3:+7716358 None:intergenic
CTCACTGTTTAGGGATGATG+AGG 0.592643 5_3:-7716853 Msa0795690:five_prime_UTR
ATGTCGCCTGAAAATACCGT+TGG 0.599343 5_3:-7716446 Msa0795690:CDS
TGCACCCAACGTGTTCTCGA+TGG 0.600223 5_3:+7716481 None:intergenic
TACTTCAATCTGAACTTCCA+AGG 0.601898 5_3:-7715986 Msa0795690:exon
TGTCCCTCAAAAGTGTTGAG+TGG 0.609379 5_3:+7715845 None:intergenic
GGTGAAATTTGAGTTTGTGG+GGG 0.618265 5_3:+7716705 None:intergenic
ACGTTGAGTAGAAGTTTCGA+TGG 0.635634 5_3:+7716506 None:intergenic
TGTTGTTGTTACGAGAAAGG+TGG 0.636326 5_3:+7716663 None:intergenic
AACCTTCACTAATTCGCCAA+CGG 0.655659 5_3:+7716430 None:intergenic
CGTGTCCATCGAGAACACGT+TGG 0.692755 5_3:-7716486 Msa0795690:CDS
CTCATCATCCCTAAACAGTG+AGG 0.694635 5_3:+7716854 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGATATAAATTATGAAAAAA+GGG + chr5_3:7716202-7716221 None:intergenic 15.0%
!! AGGATATAAATTATGAAAAA+AGG + chr5_3:7716203-7716222 None:intergenic 15.0%
!! AAAAATGATATGAAAAAACA+AGG + chr5_3:7716223-7716242 None:intergenic 15.0%
!! AAGTAAAAAATAATACTGTT+TGG - chr5_3:7716700-7716719 Msa0795690:five_prime_UTR 15.0%
!! GGATATAAATTATGAAAAAA+GGG + chr5_3:7716202-7716221 None:intergenic 15.0%
!! AGGATATAAATTATGAAAAA+AGG + chr5_3:7716203-7716222 None:intergenic 15.0%
!! AAAAATGATATGAAAAAACA+AGG + chr5_3:7716223-7716242 None:intergenic 15.0%
!! AAGTAAAAAATAATACTGTT+TGG - chr5_3:7716700-7716719 Msa0795690:five_prime_UTR 15.0%
!! AAGATATTATTCACACTTAT+TGG - chr5_3:7716551-7716570 Msa0795690:CDS 20.0%
!! AATCACTTTAGCATTAATTA+TGG + chr5_3:7716584-7716603 None:intergenic 20.0%
!! AAGATATTATTCACACTTAT+TGG - chr5_3:7716551-7716570 Msa0795690:CDS 20.0%
!! AATCACTTTAGCATTAATTA+TGG + chr5_3:7716584-7716603 None:intergenic 20.0%
!! ACTTATATTTCGATTTGTAG+AGG + chr5_3:7715711-7715730 None:intergenic 25.0%
!!! GGTTTTTTTCAAAAGTGAAA+GGG + chr5_3:7715797-7715816 None:intergenic 25.0%
!!! TGGTTTTTTTCAAAAGTGAA+AGG + chr5_3:7715798-7715817 None:intergenic 25.0%
! AATTAATGCTAAAGTGATTG+AGG - chr5_3:7716585-7716604 Msa0795690:CDS 25.0%
! AATCTTATGTATCTTGTGAA+AGG - chr5_3:7716657-7716676 Msa0795690:five_prime_UTR 25.0%
! AGGGCAACTAAATATAATTT+GGG + chr5_3:7716852-7716871 None:intergenic 25.0%
! AAGGGCAACTAAATATAATT+TGG + chr5_3:7716853-7716872 None:intergenic 25.0%
!! ACTTATATTTCGATTTGTAG+AGG + chr5_3:7715711-7715730 None:intergenic 25.0%
!!! GGTTTTTTTCAAAAGTGAAA+GGG + chr5_3:7715797-7715816 None:intergenic 25.0%
!!! TGGTTTTTTTCAAAAGTGAA+AGG + chr5_3:7715798-7715817 None:intergenic 25.0%
! AATTAATGCTAAAGTGATTG+AGG - chr5_3:7716585-7716604 Msa0795690:CDS 25.0%
! AATCTTATGTATCTTGTGAA+AGG - chr5_3:7716657-7716676 Msa0795690:five_prime_UTR 25.0%
! AGGGCAACTAAATATAATTT+GGG + chr5_3:7716852-7716871 None:intergenic 25.0%
! AAGGGCAACTAAATATAATT+TGG + chr5_3:7716853-7716872 None:intergenic 25.0%
! ATATTTCGATTTGTAGAGGT+TGG + chr5_3:7715707-7715726 None:intergenic 30.0%
AGAGTTTGGATTTCAGTTTA+CGG + chr5_3:7715858-7715877 None:intergenic 30.0%
! TGCATTGATGACTTATGATA+AGG - chr5_3:7716070-7716089 Msa0795690:intron 30.0%
TAATTACTTTCAAGCGTGAA+TGG + chr5_3:7716155-7716174 None:intergenic 30.0%
ATGAAAAAAGGGAACATTGA+AGG + chr5_3:7716191-7716210 None:intergenic 30.0%
TATACACGATGCATATGATA+AGG + chr5_3:7716355-7716374 None:intergenic 30.0%
TAATCAACCACCAAATGAAA+TGG - chr5_3:7716400-7716419 Msa0795690:CDS 30.0%
TAGTGAGAAATTGAAGAACT+TGG - chr5_3:7716438-7716457 Msa0795690:CDS 30.0%
AGTGAGAAATTGAAGAACTT+GGG - chr5_3:7716439-7716458 Msa0795690:CDS 30.0%
ATGTATCTTGTGAAAGGTTA+AGG - chr5_3:7716663-7716682 Msa0795690:five_prime_UTR 30.0%
! AATCTAGCTGCATGTATTTT+TGG - chr5_3:7716732-7716751 Msa0795690:five_prime_UTR 30.0%
AAATTTATGAATCGTCAAGC+TGG - chr5_3:7716791-7716810 Msa0795690:five_prime_UTR 30.0%
ATCCTTTACATGTTGCATAA+GGG + chr5_3:7716871-7716890 None:intergenic 30.0%
TATCCTTTACATGTTGCATA+AGG + chr5_3:7716872-7716891 None:intergenic 30.0%
! ATATTTCGATTTGTAGAGGT+TGG + chr5_3:7715707-7715726 None:intergenic 30.0%
AGAGTTTGGATTTCAGTTTA+CGG + chr5_3:7715858-7715877 None:intergenic 30.0%
! TGCATTGATGACTTATGATA+AGG - chr5_3:7716070-7716089 Msa0795690:intron 30.0%
TAATTACTTTCAAGCGTGAA+TGG + chr5_3:7716155-7716174 None:intergenic 30.0%
ATGAAAAAAGGGAACATTGA+AGG + chr5_3:7716191-7716210 None:intergenic 30.0%
TATACACGATGCATATGATA+AGG + chr5_3:7716355-7716374 None:intergenic 30.0%
TAATCAACCACCAAATGAAA+TGG - chr5_3:7716400-7716419 Msa0795690:CDS 30.0%
TAGTGAGAAATTGAAGAACT+TGG - chr5_3:7716438-7716457 Msa0795690:CDS 30.0%
AGTGAGAAATTGAAGAACTT+GGG - chr5_3:7716439-7716458 Msa0795690:CDS 30.0%
ATGTATCTTGTGAAAGGTTA+AGG - chr5_3:7716663-7716682 Msa0795690:five_prime_UTR 30.0%
! AATCTAGCTGCATGTATTTT+TGG - chr5_3:7716732-7716751 Msa0795690:five_prime_UTR 30.0%
AAATTTATGAATCGTCAAGC+TGG - chr5_3:7716791-7716810 Msa0795690:five_prime_UTR 30.0%
ATCCTTTACATGTTGCATAA+GGG + chr5_3:7716871-7716890 None:intergenic 30.0%
TATCCTTTACATGTTGCATA+AGG + chr5_3:7716872-7716891 None:intergenic 30.0%
!! AGGTTTTGATGTTCATGGAT+TGG + chr5_3:7715607-7715626 None:intergenic 35.0%
ACATCAAAACCTCACTGTTT+AGG - chr5_3:7715615-7715634 Msa0795690:three_prime_UTR 35.0%
CATCAAAACCTCACTGTTTA+GGG - chr5_3:7715616-7715635 Msa0795690:three_prime_UTR 35.0%
TGATGAGGCTATTATTTGTC+AGG - chr5_3:7715640-7715659 Msa0795690:three_prime_UTR 35.0%
! AGGGTGAAATTTGAGTTTGT+GGG + chr5_3:7715778-7715797 None:intergenic 35.0%
! AAGGGTGAAATTTGAGTTTG+TGG + chr5_3:7715779-7715798 None:intergenic 35.0%
! TGTTGTTGTTGTTACGAGAA+AGG + chr5_3:7715821-7715840 None:intergenic 35.0%
ATCCAAACTCTCTTTGTCTT+TGG - chr5_3:7715867-7715886 Msa0795690:three_prime_UTR 35.0%
AACGGAAATTTGTCAGTTTG+AGG + chr5_3:7715918-7715937 None:intergenic 35.0%
TCAAACTGACAAATTTCCGT+TGG - chr5_3:7715917-7715936 Msa0795690:three_prime_UTR 35.0%
CAAATTTCCGTTGGATACAA+CGG - chr5_3:7715926-7715945 Msa0795690:three_prime_UTR 35.0%
CTTATGATAAGGAGAAGAGA+AGG - chr5_3:7716081-7716100 Msa0795690:intron 35.0%
AAGGGAACATTGAAGGATTA+AGG + chr5_3:7716184-7716203 None:intergenic 35.0%
! CATTTGGTGGTTGATTAACA+TGG + chr5_3:7716397-7716416 None:intergenic 35.0%
GTGAGAAATTGAAGAACTTG+GGG - chr5_3:7716440-7716459 Msa0795690:CDS 35.0%
TTGGAAGTTCAGATTGAAGT+AGG + chr5_3:7716493-7716512 None:intergenic 35.0%
TACTTCAATCTGAACTTCCA+AGG - chr5_3:7716492-7716511 Msa0795690:CDS 35.0%
GTGACTGATTGAATCTCAAT+TGG - chr5_3:7716610-7716629 Msa0795690:five_prime_UTR 35.0%
TGAGTAGTATGAGGTAGTTT+AGG - chr5_3:7716823-7716842 Msa0795690:five_prime_UTR 35.0%
!! GTTCATGGATTGGTATCTTT+GGG + chr5_3:7715597-7715616 None:intergenic 35.0%
!! TGTTCATGGATTGGTATCTT+TGG + chr5_3:7715598-7715617 None:intergenic 35.0%
!! AGGTTTTGATGTTCATGGAT+TGG + chr5_3:7715607-7715626 None:intergenic 35.0%
ACATCAAAACCTCACTGTTT+AGG - chr5_3:7715615-7715634 Msa0795690:three_prime_UTR 35.0%
CATCAAAACCTCACTGTTTA+GGG - chr5_3:7715616-7715635 Msa0795690:three_prime_UTR 35.0%
TGATGAGGCTATTATTTGTC+AGG - chr5_3:7715640-7715659 Msa0795690:three_prime_UTR 35.0%
! AGGGTGAAATTTGAGTTTGT+GGG + chr5_3:7715778-7715797 None:intergenic 35.0%
! AAGGGTGAAATTTGAGTTTG+TGG + chr5_3:7715779-7715798 None:intergenic 35.0%
! TGTTGTTGTTGTTACGAGAA+AGG + chr5_3:7715821-7715840 None:intergenic 35.0%
ATCCAAACTCTCTTTGTCTT+TGG - chr5_3:7715867-7715886 Msa0795690:three_prime_UTR 35.0%
AACGGAAATTTGTCAGTTTG+AGG + chr5_3:7715918-7715937 None:intergenic 35.0%
TCAAACTGACAAATTTCCGT+TGG - chr5_3:7715917-7715936 Msa0795690:three_prime_UTR 35.0%
CAAATTTCCGTTGGATACAA+CGG - chr5_3:7715926-7715945 Msa0795690:three_prime_UTR 35.0%
CTTATGATAAGGAGAAGAGA+AGG - chr5_3:7716081-7716100 Msa0795690:intron 35.0%
AAGGGAACATTGAAGGATTA+AGG + chr5_3:7716184-7716203 None:intergenic 35.0%
! CATTTGGTGGTTGATTAACA+TGG + chr5_3:7716397-7716416 None:intergenic 35.0%
GTGAGAAATTGAAGAACTTG+GGG - chr5_3:7716440-7716459 Msa0795690:CDS 35.0%
TTGGAAGTTCAGATTGAAGT+AGG + chr5_3:7716493-7716512 None:intergenic 35.0%
TACTTCAATCTGAACTTCCA+AGG - chr5_3:7716492-7716511 Msa0795690:CDS 35.0%
GTGACTGATTGAATCTCAAT+TGG - chr5_3:7716610-7716629 Msa0795690:five_prime_UTR 35.0%
TGAGTAGTATGAGGTAGTTT+AGG - chr5_3:7716823-7716842 Msa0795690:five_prime_UTR 35.0%
!! CAGTGAGGTTTTGATGTTCA+TGG + chr5_3:7715612-7715631 None:intergenic 40.0%
ATTATTTGTCAGGTCACTGC+TGG - chr5_3:7715650-7715669 Msa0795690:three_prime_UTR 40.0%
AATGAGTGAAGGAAGCTTCT+AGG + chr5_3:7715749-7715768 None:intergenic 40.0%
! GGTGAAATTTGAGTTTGTGG+GGG + chr5_3:7715776-7715795 None:intergenic 40.0%
! GGGTGAAATTTGAGTTTGTG+GGG + chr5_3:7715777-7715796 None:intergenic 40.0%
! TGTTGTTGTTACGAGAAAGG+TGG + chr5_3:7715818-7715837 None:intergenic 40.0%
AGCCAAAGACAAAGAGAGTT+TGG + chr5_3:7715872-7715891 None:intergenic 40.0%
! TCTCTTTGTCTTTGGCTTCA+TGG - chr5_3:7715875-7715894 Msa0795690:three_prime_UTR 40.0%
! CTCTTTGTCTTTGGCTTCAT+GGG - chr5_3:7715876-7715895 Msa0795690:three_prime_UTR 40.0%
GTCAGTTTGAGGAGTAGAAA+CGG + chr5_3:7715907-7715926 None:intergenic 40.0%
TTGGTTTCCGTTGTATCCAA+CGG + chr5_3:7715936-7715955 None:intergenic 40.0%
AGAAGTTTCGATGGTCTAAG+AGG + chr5_3:7715966-7715985 None:intergenic 40.0%
ACGTTGAGTAGAAGTTTCGA+TGG + chr5_3:7715975-7715994 None:intergenic 40.0%
! AATTCGCCAACGGTATTTTC+AGG + chr5_3:7716041-7716060 None:intergenic 40.0%
AACCTTCACTAATTCGCCAA+CGG + chr5_3:7716051-7716070 None:intergenic 40.0%
GAAGAGAAGGCCATTATTGA+AGG - chr5_3:7716094-7716113 Msa0795690:intron 40.0%
TGAATGGAGAGAAGTGAAGT+TGG + chr5_3:7716139-7716158 None:intergenic 40.0%
CAAACCTGCACCATTTCATT+TGG + chr5_3:7716413-7716432 None:intergenic 40.0%
ATGAAATGGTGCAGGTTTGA+AGG - chr5_3:7716414-7716433 Msa0795690:CDS 40.0%
AATTGAAGAACTTGGGGTCA+AGG - chr5_3:7716446-7716465 Msa0795690:CDS 40.0%
CGAAGCTATTGAGTAGTATG+AGG - chr5_3:7716814-7716833 Msa0795690:five_prime_UTR 40.0%
TGCCCTTATGCAACATGTAA+AGG - chr5_3:7716866-7716885 Msa0795690:five_prime_UTR 40.0%
!! CAGTGAGGTTTTGATGTTCA+TGG + chr5_3:7715612-7715631 None:intergenic 40.0%
ATTATTTGTCAGGTCACTGC+TGG - chr5_3:7715650-7715669 Msa0795690:three_prime_UTR 40.0%
AATGAGTGAAGGAAGCTTCT+AGG + chr5_3:7715749-7715768 None:intergenic 40.0%
! GGTGAAATTTGAGTTTGTGG+GGG + chr5_3:7715776-7715795 None:intergenic 40.0%
! GGGTGAAATTTGAGTTTGTG+GGG + chr5_3:7715777-7715796 None:intergenic 40.0%
! TGTTGTTGTTACGAGAAAGG+TGG + chr5_3:7715818-7715837 None:intergenic 40.0%
AGCCAAAGACAAAGAGAGTT+TGG + chr5_3:7715872-7715891 None:intergenic 40.0%
! TCTCTTTGTCTTTGGCTTCA+TGG - chr5_3:7715875-7715894 Msa0795690:three_prime_UTR 40.0%
! CTCTTTGTCTTTGGCTTCAT+GGG - chr5_3:7715876-7715895 Msa0795690:three_prime_UTR 40.0%
GTCAGTTTGAGGAGTAGAAA+CGG + chr5_3:7715907-7715926 None:intergenic 40.0%
TTGGTTTCCGTTGTATCCAA+CGG + chr5_3:7715936-7715955 None:intergenic 40.0%
AGAAGTTTCGATGGTCTAAG+AGG + chr5_3:7715966-7715985 None:intergenic 40.0%
ACGTTGAGTAGAAGTTTCGA+TGG + chr5_3:7715975-7715994 None:intergenic 40.0%
! AATTCGCCAACGGTATTTTC+AGG + chr5_3:7716041-7716060 None:intergenic 40.0%
AACCTTCACTAATTCGCCAA+CGG + chr5_3:7716051-7716070 None:intergenic 40.0%
GAAGAGAAGGCCATTATTGA+AGG - chr5_3:7716094-7716113 Msa0795690:intron 40.0%
TGAATGGAGAGAAGTGAAGT+TGG + chr5_3:7716139-7716158 None:intergenic 40.0%
CAAACCTGCACCATTTCATT+TGG + chr5_3:7716413-7716432 None:intergenic 40.0%
ATGAAATGGTGCAGGTTTGA+AGG - chr5_3:7716414-7716433 Msa0795690:CDS 40.0%
AATTGAAGAACTTGGGGTCA+AGG - chr5_3:7716446-7716465 Msa0795690:CDS 40.0%
CGAAGCTATTGAGTAGTATG+AGG - chr5_3:7716814-7716833 Msa0795690:five_prime_UTR 40.0%
TGCCCTTATGCAACATGTAA+AGG - chr5_3:7716866-7716885 Msa0795690:five_prime_UTR 40.0%
CTCATCATCCCTAAACAGTG+AGG + chr5_3:7715627-7715646 None:intergenic 45.0%
CTCACTGTTTAGGGATGATG+AGG - chr5_3:7715625-7715644 Msa0795690:three_prime_UTR 45.0%
CAGGTCACTGCTGGAAAATT+CGG - chr5_3:7715659-7715678 Msa0795690:three_prime_UTR 45.0%
AGGTCACTGCTGGAAAATTC+GGG - chr5_3:7715660-7715679 Msa0795690:three_prime_UTR 45.0%
! TTTGTCTTTGGCTTCATGGG+TGG - chr5_3:7715879-7715898 Msa0795690:three_prime_UTR 45.0%
TGGTCTAAGAGGAGAGTCAT+TGG + chr5_3:7715955-7715974 None:intergenic 45.0%
ATGTCGCCTGAAAATACCGT+TGG - chr5_3:7716032-7716051 Msa0795690:CDS 45.0%
TACCGTTGGCGAATTAGTGA+AGG - chr5_3:7716046-7716065 Msa0795690:CDS 45.0%
! GGATCGGTGTCCTTCAATAA+TGG + chr5_3:7716107-7716126 None:intergenic 45.0%
!! AAGTTGGTAGCGGTTTGGAT+CGG + chr5_3:7716123-7716142 None:intergenic 45.0%
!! AAGTGAAGTTGGTAGCGGTT+TGG + chr5_3:7716128-7716147 None:intergenic 45.0%
!! GAGAGAAGTGAAGTTGGTAG+CGG + chr5_3:7716133-7716152 None:intergenic 45.0%
ACCACCAAATGAAATGGTGC+AGG - chr5_3:7716406-7716425 Msa0795690:CDS 45.0%
ACCTGCACCATTTCATTTGG+TGG + chr5_3:7716410-7716429 None:intergenic 45.0%
TGAACTTCCAAGGCAGCATA+TGG - chr5_3:7716502-7716521 Msa0795690:CDS 45.0%
TCAATTGCCATATGCTGCCT+TGG + chr5_3:7716512-7716531 None:intergenic 45.0%
! TTGGCCACTCAACACTTTTG+AGG - chr5_3:7716629-7716648 Msa0795690:five_prime_UTR 45.0%
! TGGCCACTCAACACTTTTGA+GGG - chr5_3:7716630-7716649 Msa0795690:five_prime_UTR 45.0%
!! TGTCCCTCAAAAGTGTTGAG+TGG + chr5_3:7716636-7716655 None:intergenic 45.0%
CTCATCATCCCTAAACAGTG+AGG + chr5_3:7715627-7715646 None:intergenic 45.0%
CTCACTGTTTAGGGATGATG+AGG - chr5_3:7715625-7715644 Msa0795690:three_prime_UTR 45.0%
CAGGTCACTGCTGGAAAATT+CGG - chr5_3:7715659-7715678 Msa0795690:three_prime_UTR 45.0%
AGGTCACTGCTGGAAAATTC+GGG - chr5_3:7715660-7715679 Msa0795690:three_prime_UTR 45.0%
! TTTGTCTTTGGCTTCATGGG+TGG - chr5_3:7715879-7715898 Msa0795690:three_prime_UTR 45.0%
TGGTCTAAGAGGAGAGTCAT+TGG + chr5_3:7715955-7715974 None:intergenic 45.0%
ATGTCGCCTGAAAATACCGT+TGG - chr5_3:7716032-7716051 Msa0795690:CDS 45.0%
TACCGTTGGCGAATTAGTGA+AGG - chr5_3:7716046-7716065 Msa0795690:CDS 45.0%
! GGATCGGTGTCCTTCAATAA+TGG + chr5_3:7716107-7716126 None:intergenic 45.0%
!! AAGTTGGTAGCGGTTTGGAT+CGG + chr5_3:7716123-7716142 None:intergenic 45.0%
!! AAGTGAAGTTGGTAGCGGTT+TGG + chr5_3:7716128-7716147 None:intergenic 45.0%
!! GAGAGAAGTGAAGTTGGTAG+CGG + chr5_3:7716133-7716152 None:intergenic 45.0%
ACCACCAAATGAAATGGTGC+AGG - chr5_3:7716406-7716425 Msa0795690:CDS 45.0%
ACCTGCACCATTTCATTTGG+TGG + chr5_3:7716410-7716429 None:intergenic 45.0%
TGAACTTCCAAGGCAGCATA+TGG - chr5_3:7716502-7716521 Msa0795690:CDS 45.0%
TCAATTGCCATATGCTGCCT+TGG + chr5_3:7716512-7716531 None:intergenic 45.0%
! TTGGCCACTCAACACTTTTG+AGG - chr5_3:7716629-7716648 Msa0795690:five_prime_UTR 45.0%
! TGGCCACTCAACACTTTTGA+GGG - chr5_3:7716630-7716649 Msa0795690:five_prime_UTR 45.0%
!! TGTCCCTCAAAAGTGTTGAG+TGG + chr5_3:7716636-7716655 None:intergenic 45.0%
GTGGGGGCTTAAATGAGTGA+AGG + chr5_3:7715760-7715779 None:intergenic 50.0%
GTGTCCATCGAGAACACGTT+GGG - chr5_3:7715993-7716012 Msa0795690:exon 50.0%
GTGGGGGCTTAAATGAGTGA+AGG + chr5_3:7715760-7715779 None:intergenic 50.0%
GTGTCCATCGAGAACACGTT+GGG - chr5_3:7715993-7716012 Msa0795690:exon 50.0%
CGTGTCCATCGAGAACACGT+TGG - chr5_3:7715992-7716011 Msa0795690:exon 55.0%
TGCACCCAACGTGTTCTCGA+TGG + chr5_3:7716000-7716019 None:intergenic 55.0%
CGTGTCCATCGAGAACACGT+TGG - chr5_3:7715992-7716011 Msa0795690:exon 55.0%
TGCACCCAACGTGTTCTCGA+TGG + chr5_3:7716000-7716019 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7715597 7716903 7715597 ID=Msa0795690;Name=Msa0795690
chr5_3 mRNA 7715597 7716903 7715597 ID=Msa0795690-mRNA-1;Parent=Msa0795690;Name=Msa0795690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=297|1|1|1|1|1|2|399|116
chr5_3 exon 7715597 7716072 7715597 ID=Msa0795690-mRNA-1:exon:3182;Parent=Msa0795690-mRNA-1
chr5_3 exon 7716333 7716903 7716333 ID=Msa0795690-mRNA-1:exon:3181;Parent=Msa0795690-mRNA-1
chr5_3 five_prime_UTR 7716607 7716903 7716607 ID=Msa0795690-mRNA-1:five_prime_utr;Parent=Msa0795690-mRNA-1
chr5_3 CDS 7716333 7716606 7716333 ID=Msa0795690-mRNA-1:cds;Parent=Msa0795690-mRNA-1
chr5_3 CDS 7715996 7716072 7715996 ID=Msa0795690-mRNA-1:cds;Parent=Msa0795690-mRNA-1
chr5_3 three_prime_UTR 7715597 7715995 7715597 ID=Msa0795690-mRNA-1:three_prime_utr;Parent=Msa0795690-mRNA-1
Gene Sequence

>Msa0795690

ATGGGTGGTACCGTTTCTACTCCTCAAACTGACAAATTTCCGTTGGATACAACGGAAACCAATGACTCTCCTCTTAGACCATCGAAACTTCTACTCAACGTGTCCATCGAGAACACGTTGGGTGCAATACAAGTTTTGATGTCGCCTGAAAATACCGTTGGCGAATTAGTGAAGGTTGCATTGATGACTTATGATAAGGAGAAGAGAAGGCCATTATTGAAGGACACCGATCCAAACCGCTACCAACTTCACTTCTCTCCATTCACGCTTGAAAGTTTGAAGGTTAGTGAGAAATTGAAGAACTTGGGGTCAAGGAACTTCTTTCTATGCTCAAAGCCTACTTCAATCTGA
Protein sequence

>Msa0795690

MGGTVSTPQTDKFPLDTTETNDSPLRPSKLLLNVSIENTLGAIQVLMSPENTVGELVKVALMTYDKEKRRPLLKDTDPNRYQLHFSPFTLESLKVSEKLKNLGSRNFFLCSKPTSI*