Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812820 | XP_003615635.1 | 81.609 | 435 | 6 | 4 | 1 | 361 | 1 | 435 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812820 | sp|Q93Z81|CAX3_ARATH | 55.263 | 418 | 103 | 6 | 25 | 360 | 32 | 447 | 1.62e-132 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812820 | G7KE49 | 81.609 | 435 | 6 | 4 | 1 | 361 | 1 | 435 | 0.0 | 622 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036430 | Msa0812820 | 0.827647 | 1.393697e-54 | -8.615850e-47 |
| Msa0044100 | Msa0812820 | 0.824676 | 7.092823e-54 | -8.615850e-47 |
| Msa0053110 | Msa0812820 | 0.800930 | 1.143627e-48 | -8.615850e-47 |
| Msa0072370 | Msa0812820 | 0.819681 | 1.022174e-52 | -8.615850e-47 |
| Msa0078430 | Msa0812820 | 0.804682 | 1.921539e-49 | -8.615850e-47 |
| Msa0084500 | Msa0812820 | 0.809336 | 1.989734e-50 | -8.615850e-47 |
| Msa0095540 | Msa0812820 | 0.858347 | 8.767566e-63 | -8.615850e-47 |
| Msa0096000 | Msa0812820 | 0.838375 | 2.984882e-57 | -8.615850e-47 |
| Msa0105420 | Msa0812820 | 0.803146 | 4.006545e-49 | -8.615850e-47 |
| Msa0609430 | Msa0812820 | 0.804785 | 1.828326e-49 | -8.615850e-47 |
| Msa0611380 | Msa0812820 | 0.877603 | 5.505436e-69 | -8.615850e-47 |
| Msa0618180 | Msa0812820 | 0.824170 | 9.331556e-54 | -8.615850e-47 |
| Msa0618290 | Msa0812820 | 0.801861 | 7.375062e-49 | -8.615850e-47 |
| Msa0619070 | Msa0812820 | 0.804444 | 2.154113e-49 | -8.615850e-47 |
| Msa0619980 | Msa0812820 | 0.802269 | 6.079420e-49 | -8.615850e-47 |
| Msa0619990 | Msa0812820 | 0.820166 | 7.916419e-53 | -8.615850e-47 |
| Msa0628640 | Msa0812820 | 0.899445 | 1.968591e-77 | -8.615850e-47 |
| Msa0631120 | Msa0812820 | 0.890211 | 1.209200e-73 | -8.615850e-47 |
| Msa0650070 | Msa0812820 | 0.821237 | 4.492012e-53 | -8.615850e-47 |
| Msa0663090 | Msa0812820 | 0.800754 | 1.242781e-48 | -8.615850e-47 |
| Msa0666030 | Msa0812820 | 0.880203 | 6.660858e-70 | -8.615850e-47 |
| Msa0669340 | Msa0812820 | 0.912625 | 1.572570e-83 | -8.615850e-47 |
| Msa0684500 | Msa0812820 | 0.858215 | 9.601410e-63 | -8.615850e-47 |
| Msa0692060 | Msa0812820 | 0.802718 | 4.910762e-49 | -8.615850e-47 |
| Msa0701970 | Msa0812820 | 0.843741 | 1.162438e-58 | -8.615850e-47 |
| Msa0706370 | Msa0812820 | 0.819968 | 8.788935e-53 | -8.615850e-47 |
| Msa0706420 | Msa0812820 | 0.805215 | 1.486746e-49 | -8.615850e-47 |
| Msa0716450 | Msa0812820 | 0.849944 | 2.335814e-60 | -8.615850e-47 |
| Msa0717260 | Msa0812820 | 0.880789 | 4.108951e-70 | -8.615850e-47 |
| Msa0734230 | Msa0812820 | 0.887476 | 1.379807e-72 | -8.615850e-47 |
| Msa0741900 | Msa0812820 | 0.827701 | 1.352625e-54 | -8.615850e-47 |
| Msa0754370 | Msa0812820 | 0.826111 | 3.244812e-54 | -8.615850e-47 |
| Msa0758320 | Msa0812820 | 0.873143 | 1.847063e-67 | -8.615850e-47 |
| Msa0772020 | Msa0812820 | 0.812671 | 3.769416e-51 | -8.615850e-47 |
| Msa0775440 | Msa0812820 | 0.911812 | 3.978636e-83 | -8.615850e-47 |
| Msa0787260 | Msa0812820 | 0.817886 | 2.613552e-52 | -8.615850e-47 |
| Msa0790850 | Msa0812820 | 0.800693 | 1.278457e-48 | -8.615850e-47 |
| Msa0795690 | Msa0812820 | 0.832251 | 1.051397e-55 | -8.615850e-47 |
| Msa0799030 | Msa0812820 | 0.869961 | 2.091174e-66 | -8.615850e-47 |
| Msa0799700 | Msa0812820 | 0.842856 | 2.003043e-58 | -8.615850e-47 |
| Msa0810020 | Msa0812820 | 0.847735 | 9.583507e-60 | -8.615850e-47 |
| Msa0812820 | Msa0822990 | 0.811915 | 5.513308e-51 | -8.615850e-47 |
| Msa0812820 | Msa0837440 | 0.872326 | 3.464755e-67 | -8.615850e-47 |
| Msa0812820 | Msa0837980 | 0.871883 | 4.867860e-67 | -8.615850e-47 |
| Msa0812820 | Msa0850500 | 0.809096 | 2.239775e-50 | -8.615850e-47 |
| Msa0812820 | Msa0853320 | 0.908455 | 1.678250e-81 | -8.615850e-47 |
| Msa0812820 | Msa0862100 | 0.851020 | 1.164664e-60 | -8.615850e-47 |
| Msa0812820 | Msa0870620 | 0.810002 | 1.431355e-50 | -8.615850e-47 |
| Msa0812820 | Msa0870690 | 0.820202 | 7.767379e-53 | -8.615850e-47 |
| Msa0812820 | Msa0872310 | 0.828083 | 1.094597e-54 | -8.615850e-47 |
| Msa0812820 | Msa0880710 | 0.821291 | 4.366479e-53 | -8.615850e-47 |
| Msa0812820 | Msa0885060 | 0.806409 | 8.344452e-50 | -8.615850e-47 |
| Msa0812820 | Msa0886980 | 0.815069 | 1.116519e-51 | -8.615850e-47 |
| Msa0812820 | Msa0905550 | 0.815066 | 1.118223e-51 | -8.615850e-47 |
| Msa0812820 | Msa0908170 | 0.801054 | 1.079172e-48 | -8.615850e-47 |
| Msa0812820 | Msa0936270 | 0.813092 | 3.048577e-51 | -8.615850e-47 |
| Msa0812820 | Msa0937550 | 0.802229 | 6.194474e-49 | -8.615850e-47 |
| Msa0812820 | Msa0944770 | 0.823046 | 1.710430e-53 | -8.615850e-47 |
| Msa0812820 | Msa0951710 | 0.824683 | 7.068055e-54 | -8.615850e-47 |
| Msa0812820 | Msa0966420 | 0.822585 | 2.189730e-53 | -8.615850e-47 |
| Msa0812820 | Msa0981010 | 0.819402 | 1.183764e-52 | -8.615850e-47 |
| Msa0812820 | Msa0988480 | 0.821971 | 3.040173e-53 | -8.615850e-47 |
| Msa0812820 | Msa1002620 | 0.854431 | 1.236827e-61 | -8.615850e-47 |
| Msa0812820 | Msa1010110 | 0.817332 | 3.483317e-52 | -8.615850e-47 |
| Msa0812820 | Msa1033560 | 0.851230 | 1.015814e-60 | -8.615850e-47 |
| Msa0812820 | Msa1055280 | 0.803106 | 4.082913e-49 | -8.615850e-47 |
| Msa0812820 | Msa1058760 | 0.802580 | 5.245429e-49 | -8.615850e-47 |
| Msa0812820 | Msa1073350 | 0.838645 | 2.542582e-57 | -8.615850e-47 |
| Msa0812820 | Msa1083150 | 0.821852 | 3.238926e-53 | -8.615850e-47 |
| Msa0812820 | Msa1098560 | 0.803716 | 3.052161e-49 | -8.615850e-47 |
| Msa0812820 | Msa1113850 | 0.836300 | 1.014365e-56 | -8.615850e-47 |
| Msa0812820 | Msa1125760 | 0.801538 | 8.590418e-49 | -8.615850e-47 |
| Msa0812820 | Msa1139810 | 0.820324 | 7.286082e-53 | -8.615850e-47 |
| Msa0812820 | Msa1160400 | 0.847068 | 1.460586e-59 | -8.615850e-47 |
| Msa0812820 | Msa1171360 | 0.801207 | 1.004187e-48 | -8.615850e-47 |
| Msa0812820 | Msa1172590 | 0.832886 | 7.319899e-56 | -8.615850e-47 |
| Msa0812820 | Msa1172670 | 0.808950 | 2.407974e-50 | -8.615850e-47 |
| Msa0812820 | Msa1179460 | 0.804498 | 2.098344e-49 | -8.615850e-47 |
| Msa0812820 | Msa1190120 | 0.825292 | 5.075980e-54 | -8.615850e-47 |
| Msa0812820 | Msa1197590 | 0.807807 | 4.219816e-50 | -8.615850e-47 |
| Msa0812820 | Msa1203000 | 0.858122 | 1.023120e-62 | -8.615850e-47 |
| Msa0812820 | Msa1204120 | 0.806109 | 9.649297e-50 | -8.615850e-47 |
| Msa0812820 | Msa1211550 | 0.843084 | 1.741219e-58 | -8.615850e-47 |
| Msa0812820 | Msa1217860 | 0.808400 | 3.154874e-50 | -8.615850e-47 |
| Msa0812820 | Msa1217940 | 0.865510 | 5.603797e-65 | -8.615850e-47 |
| Msa0812820 | Msa1218480 | 0.833770 | 4.406359e-56 | -8.615850e-47 |
| Msa0812820 | Msa1219260 | 0.859168 | 4.984420e-63 | -8.615850e-47 |
| Msa0812820 | Msa1227950 | 0.821891 | 3.172874e-53 | -8.615850e-47 |
| Msa0812820 | Msa1227970 | 0.825480 | 4.581792e-54 | -8.615850e-47 |
| Msa0812820 | Msa1254700 | 0.812997 | 3.199230e-51 | -8.615850e-47 |
| Msa0812820 | Msa1255040 | -0.813120 | 3.006822e-51 | -8.615850e-47 |
| Msa0812820 | Msa1255280 | 0.846758 | 1.776073e-59 | -8.615850e-47 |
| Msa0812820 | Msa1258050 | 0.855381 | 6.556391e-62 | -8.615850e-47 |
| Msa0812820 | Msa1266960 | 0.856761 | 2.585612e-62 | -8.615850e-47 |
| Msa0812820 | Msa1291870 | 0.841897 | 3.596620e-58 | -8.615850e-47 |
| Msa0812820 | Msa1308130 | 0.803086 | 4.121998e-49 | -8.615850e-47 |
| Msa0812820 | Msa1321000 | 0.815723 | 7.985683e-52 | -8.615850e-47 |
| Msa0812820 | Msa1339940 | 0.841490 | 4.603936e-58 | -8.615850e-47 |
| Msa0812820 | Msa1342430 | 0.805738 | 1.154692e-49 | -8.615850e-47 |
| Msa0812820 | Msa1343820 | 0.814251 | 1.694184e-51 | -8.615850e-47 |
| Msa0812820 | Msa1369700 | 0.850650 | 1.480833e-60 | -8.615850e-47 |
| Msa0812820 | Msa1370090 | 0.803986 | 2.682723e-49 | -8.615850e-47 |
| Msa0812820 | Msa1374440 | 0.804170 | 2.456009e-49 | -8.615850e-47 |
| Msa0812820 | Msa1379990 | 0.810168 | 1.318078e-50 | -8.615850e-47 |
| Msa0812820 | Msa1390310 | 0.803955 | 2.722417e-49 | -8.615850e-47 |
| Msa0812820 | Msa1395870 | 0.845603 | 3.664298e-59 | -8.615850e-47 |
| Msa0812820 | Msa1397250 | 0.827846 | 1.248582e-54 | -8.615850e-47 |
| Msa0812820 | Msa1397340 | 0.818412 | 1.987341e-52 | -8.615850e-47 |
| Msa0812820 | Msa1399560 | 0.858213 | 9.610506e-63 | -8.615850e-47 |
| Msa0812820 | Msa1401150 | 0.840330 | 9.277399e-58 | -8.615850e-47 |
| Msa0812820 | Msa1403970 | 0.825816 | 3.814121e-54 | -8.615850e-47 |
| Msa0812820 | Msa1405180 | 0.824244 | 8.964416e-54 | -8.615850e-47 |
| Msa0812820 | Msa1420060 | 0.808887 | 2.483818e-50 | -8.615850e-47 |
| Msa0812820 | Msa1422270 | 0.805446 | 1.329623e-49 | -8.615850e-47 |
| Msa0812820 | Msa1423450 | 0.821366 | 4.194092e-53 | -8.615850e-47 |
| Msa0812820 | Msa1437190 | 0.838642 | 2.547374e-57 | -8.615850e-47 |
| Msa0812820 | Msa1439960 | 0.809665 | 1.691415e-50 | -8.615850e-47 |
| Msa0812820 | Msa1440340 | 0.820320 | 7.299145e-53 | -8.615850e-47 |
| Msa0812820 | Msa1443840 | 0.834723 | 2.541314e-56 | -8.615850e-47 |
| Msa0812820 | Msa1449730 | 0.816064 | 6.705791e-52 | -8.615850e-47 |
| Msa0812820 | Msa1452060 | 0.847550 | 1.077396e-59 | -8.615850e-47 |
| Msa0812820 | Msa1460380 | 0.864755 | 9.674311e-65 | -8.615850e-47 |
| Msa0812820 | Msa1460890 | 0.813598 | 2.360530e-51 | -8.615850e-47 |
| Msa0130570 | Msa0812820 | 0.807821 | 4.190805e-50 | -8.615850e-47 |
| Msa0141100 | Msa0812820 | 0.858895 | 6.016275e-63 | -8.615850e-47 |
| Msa0148340 | Msa0812820 | 0.827932 | 1.190337e-54 | -8.615850e-47 |
| Msa0153420 | Msa0812820 | 0.807042 | 6.130792e-50 | -8.615850e-47 |
| Msa0172350 | Msa0812820 | 0.806304 | 8.777976e-50 | -8.615850e-47 |
| Msa0176470 | Msa0812820 | 0.809906 | 1.501222e-50 | -8.615850e-47 |
| Msa0183750 | Msa0812820 | 0.852629 | 4.071278e-61 | -8.615850e-47 |
| Msa0185480 | Msa0812820 | 0.802107 | 6.562913e-49 | -8.615850e-47 |
| Msa0188680 | Msa0812820 | -0.800780 | 1.227344e-48 | -8.615850e-47 |
| Msa0191040 | Msa0812820 | 0.862611 | 4.482003e-64 | -8.615850e-47 |
| Msa0206800 | Msa0812820 | 0.806861 | 6.698282e-50 | -8.615850e-47 |
| Msa0208520 | Msa0812820 | 0.833105 | 6.455259e-56 | -8.615850e-47 |
| Msa0220300 | Msa0812820 | 0.820038 | 8.472698e-53 | -8.615850e-47 |
| Msa0225600 | Msa0812820 | 0.819305 | 1.245140e-52 | -8.615850e-47 |
| Msa0233340 | Msa0812820 | 0.862853 | 3.775027e-64 | -8.615850e-47 |
| Msa0236440 | Msa0812820 | 0.833080 | 6.550225e-56 | -8.615850e-47 |
| Msa0374850 | Msa0812820 | 0.850348 | 1.800275e-60 | -8.615850e-47 |
| Msa0375090 | Msa0812820 | 0.852812 | 3.610030e-61 | -8.615850e-47 |
| Msa0385670 | Msa0812820 | 0.809557 | 1.783651e-50 | -8.615850e-47 |
| Msa0423360 | Msa0812820 | -0.807501 | 4.900442e-50 | -8.615850e-47 |
| Msa0426330 | Msa0812820 | 0.803764 | 2.982903e-49 | -8.615850e-47 |
| Msa0435670 | Msa0812820 | 0.801123 | 1.044496e-48 | -8.615850e-47 |
| Msa0436460 | Msa0812820 | 0.821534 | 3.835652e-53 | -8.615850e-47 |
| Msa0470340 | Msa0812820 | 0.874946 | 4.537643e-68 | -8.615850e-47 |
| Msa0470860 | Msa0812820 | 0.846413 | 2.206600e-59 | -8.615850e-47 |
| Msa0479680 | Msa0812820 | 0.806864 | 6.687873e-50 | -8.615850e-47 |
| Msa0480950 | Msa0812820 | 0.835754 | 1.395816e-56 | -8.615850e-47 |
| Msa0481110 | Msa0812820 | 0.853937 | 1.717766e-61 | -8.615850e-47 |
| Msa0251240 | Msa0812820 | 0.826543 | 2.560355e-54 | -8.615850e-47 |
| Msa0266450 | Msa0812820 | 0.831063 | 2.063968e-55 | -8.615850e-47 |
| Msa0267760 | Msa0812820 | 0.802038 | 6.781572e-49 | -8.615850e-47 |
| Msa0271040 | Msa0812820 | 0.817159 | 3.809847e-52 | -8.615850e-47 |
| Msa0282210 | Msa0812820 | 0.801922 | 7.164985e-49 | -8.615850e-47 |
| Msa0288190 | Msa0812820 | 0.810375 | 1.189392e-50 | -8.615850e-47 |
| Msa0309350 | Msa0812820 | 0.824146 | 9.454441e-54 | -8.615850e-47 |
| Msa0311690 | Msa0812820 | 0.860954 | 1.440374e-63 | -8.615850e-47 |
| Msa0315250 | Msa0812820 | 0.808284 | 3.341163e-50 | -8.615850e-47 |
| Msa0316850 | Msa0812820 | 0.800052 | 1.726949e-48 | -8.615850e-47 |
| Msa0326540 | Msa0812820 | 0.814430 | 1.546906e-51 | -8.615850e-47 |
| Msa0484690 | Msa0812820 | 0.807862 | 4.107853e-50 | -8.615850e-47 |
| Msa0531430 | Msa0812820 | 0.882328 | 1.142387e-70 | -8.615850e-47 |
| Msa0534570 | Msa0812820 | 0.858499 | 7.898896e-63 | -8.615850e-47 |
| Msa0534590 | Msa0812820 | 0.897428 | 1.420264e-76 | -8.615850e-47 |
| Msa0548620 | Msa0812820 | 0.814410 | 1.562699e-51 | -8.615850e-47 |
| Msa0548660 | Msa0812820 | 0.819286 | 1.257700e-52 | -8.615850e-47 |
| Msa0565600 | Msa0812820 | 0.837778 | 4.251758e-57 | -8.615850e-47 |
| Msa0568820 | Msa0812820 | 0.802107 | 6.562874e-49 | -8.615850e-47 |
| Msa0590800 | Msa0812820 | 0.896742 | 2.753494e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812820 | MtrunA17_Chr5g0429881 | 81.609 | 435 | 6 | 4 | 1 | 361 | 1 | 435 | 0.0 | 622 |
| Msa0812820 | MtrunA17_Chr7g0242351 | 56.931 | 404 | 94 | 6 | 25 | 351 | 34 | 434 | 8.26e-127 | 372 |
| Msa0812820 | MtrunA17_Chr4g0006841 | 58.360 | 317 | 63 | 5 | 107 | 359 | 2 | 313 | 4.64e-104 | 309 |
| Msa0812820 | MtrunA17_Chr2g0334171 | 38.845 | 381 | 145 | 6 | 55 | 352 | 63 | 438 | 2.53e-75 | 239 |
| Msa0812820 | MtrunA17_Chr3g0120501 | 35.749 | 414 | 177 | 8 | 18 | 346 | 15 | 424 | 7.39e-67 | 217 |
| Msa0812820 | MtrunA17_Chr4g0006831 | 57.317 | 82 | 33 | 2 | 25 | 106 | 34 | 113 | 1.50e-24 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0812820 | AT3G51860.1 | 55.263 | 418 | 103 | 6 | 25 | 360 | 32 | 447 | 1.65e-133 | 389 |
| Msa0812820 | AT2G38170.1 | 53.790 | 409 | 105 | 7 | 25 | 352 | 32 | 437 | 6.63e-131 | 382 |
| Msa0812820 | AT2G38170.3 | 53.790 | 409 | 105 | 7 | 25 | 352 | 32 | 437 | 7.67e-131 | 383 |
| Msa0812820 | AT5G01490.2 | 46.944 | 409 | 131 | 7 | 28 | 352 | 35 | 441 | 1.50e-121 | 358 |
| Msa0812820 | AT5G01490.1 | 46.944 | 409 | 131 | 7 | 28 | 352 | 35 | 441 | 1.50e-121 | 358 |
| Msa0812820 | AT3G51860.2 | 54.737 | 380 | 88 | 6 | 25 | 322 | 32 | 409 | 4.45e-112 | 335 |
| Msa0812820 | AT2G38170.2 | 53.251 | 323 | 85 | 6 | 25 | 284 | 32 | 351 | 1.49e-95 | 290 |
| Msa0812820 | AT1G55730.1 | 41.470 | 381 | 135 | 5 | 55 | 352 | 62 | 437 | 1.06e-82 | 258 |
| Msa0812820 | AT1G55730.2 | 41.470 | 381 | 135 | 5 | 55 | 352 | 62 | 437 | 1.06e-82 | 258 |
| Msa0812820 | AT3G13320.1 | 39.895 | 381 | 141 | 5 | 55 | 352 | 62 | 437 | 2.50e-79 | 250 |
| Msa0812820 | AT1G55720.2 | 39.481 | 385 | 146 | 7 | 50 | 352 | 67 | 446 | 7.32e-75 | 238 |
| Msa0812820 | AT1G55720.1 | 39.481 | 385 | 146 | 7 | 50 | 352 | 67 | 446 | 1.88e-74 | 238 |
Find 76 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACATTTCTTAGTATT+TGG | 0.108992 | 5_3:+43268743 | None:intergenic |
| TATAGACTTGTACATGAAAT+TGG | 0.165950 | 5_3:+43262124 | None:intergenic |
| TGGTCAAGTTCTTGGAAATT+TGG | 0.211542 | 5_3:-43262212 | Msa0812820:three_prime_UTR |
| CGAAGATGGATTTCTATAAA+TGG | 0.218449 | 5_3:-43262333 | Msa0812820:three_prime_UTR |
| CATGCAACAATCACACTTAA+TGG | 0.225296 | 5_3:+43263804 | None:intergenic |
| TGTTACAGCCTTCACTTTAC+AGG | 0.243931 | 5_3:-43263712 | Msa0812820:intron |
| TTTAATTTCTCTCTTGGGTT+GGG | 0.246076 | 5_3:+43268961 | None:intergenic |
| AAAGCGTATTTGAACATTAA+TGG | 0.249587 | 5_3:+43265313 | None:intergenic |
| TTTACTGTTGCAGATCATTA+TGG | 0.271655 | 5_3:-43262459 | Msa0812820:intron |
| TCAAACCTTCTCTTGGTTCT+AGG | 0.273673 | 5_3:-43265852 | Msa0812820:CDS |
| CATATCTTTGCTCCCTCTTA+AGG | 0.282560 | 5_3:+43265799 | None:intergenic |
| GACTTCAATCTTCTTGAAAC+TGG | 0.289458 | 5_3:-43263756 | Msa0812820:CDS |
| ACTAGGCTGCTTCAGATTCT+TGG | 0.297535 | 5_3:-43264425 | Msa0812820:intron |
| GTTCTCCAAATCTTCATTCA+TGG | 0.298533 | 5_3:+43268855 | None:intergenic |
| TAGAAATCCATCTTCGAATC+TGG | 0.320089 | 5_3:+43262340 | None:intergenic |
| TCGAACCATGAATGAAGATT+TGG | 0.334079 | 5_3:-43268860 | Msa0812820:CDS |
| CATTCTCTCAAACCTTCTCT+TGG | 0.346415 | 5_3:-43265859 | Msa0812820:CDS |
| CTAGGCTGCTTCAGATTCTT+GGG | 0.347536 | 5_3:-43264424 | Msa0812820:intron |
| AATGGGTATACGAATGGATT+TGG | 0.351294 | 5_3:-43263778 | Msa0812820:CDS |
| ATCAACACTAGCTAAAACTT+TGG | 0.353727 | 5_3:+43268934 | None:intergenic |
| AAAGAAATCAGATATGGTTT+TGG | 0.357259 | 5_3:-43268785 | Msa0812820:CDS |
| AATTTAACATTCGACGCAAT+AGG | 0.359719 | 5_3:+43262054 | None:intergenic |
| TGTGATTGTTGCATGGATAA+TGG | 0.362308 | 5_3:-43263796 | Msa0812820:CDS |
| CTTCTTGAAACTGGATGTCT+TGG | 0.366676 | 5_3:-43263747 | Msa0812820:CDS |
| CAAGAGAAGGTTTGAGAGAA+TGG | 0.377825 | 5_3:+43265860 | None:intergenic |
| TGACAATTGAAGAGTACTAT+TGG | 0.380652 | 5_3:+43265267 | None:intergenic |
| GTTGTCAAGTTCTCCTTGCT+TGG | 0.384448 | 5_3:-43265885 | Msa0812820:CDS |
| TGTGAGAAAGAAATCAGATA+TGG | 0.399485 | 5_3:-43268791 | Msa0812820:CDS |
| CTAGGCAGCTCACTCCTTTG+TGG | 0.409952 | 5_3:-43265834 | Msa0812820:CDS |
| TTAATTTCTCTCTTGGGTTG+GGG | 0.410150 | 5_3:+43268962 | None:intergenic |
| ATTTAACATTCGACGCAATA+GGG | 0.413923 | 5_3:+43262055 | None:intergenic |
| ATGTTCAAATACGCTTTGGC+TGG | 0.415484 | 5_3:-43265307 | Msa0812820:CDS |
| TAGATATACTTACTGATTTG+TGG | 0.418490 | 5_3:+43263507 | None:intergenic |
| ATTAATGTTCAAATACGCTT+TGG | 0.427152 | 5_3:-43265311 | Msa0812820:CDS |
| ATAGACTTGTACATGAAATT+GGG | 0.445338 | 5_3:+43262125 | None:intergenic |
| TCTTCATTCATGGTTCGAAA+TGG | 0.450144 | 5_3:+43268865 | None:intergenic |
| GTGATTGTTGCATGGATAAT+GGG | 0.451478 | 5_3:-43263795 | Msa0812820:CDS |
| GTGGCTTAGCAAACCTTAAG+AGG | 0.457666 | 5_3:-43265812 | Msa0812820:CDS |
| TCTGCAGCATTCCCAACAAT+TGG | 0.469344 | 5_3:+43264366 | None:intergenic |
| ATTTGCTTACAAGAACAAAC+TGG | 0.472635 | 5_3:-43264325 | Msa0812820:intron |
| TGAACATTAATGGCAGCAAA+TGG | 0.479920 | 5_3:+43265323 | None:intergenic |
| AAATCAGCAGCAACAGCTAA+AGG | 0.486221 | 5_3:+43268664 | None:intergenic |
| TTCAAATACGCTTTGGCTGG+GGG | 0.492117 | 5_3:-43265304 | Msa0812820:CDS |
| GTTCAAATACGCTTTGGCTG+GGG | 0.504789 | 5_3:-43265305 | Msa0812820:CDS |
| TGTTCAAATACGCTTTGGCT+GGG | 0.508594 | 5_3:-43265306 | Msa0812820:CDS |
| ATTTCTCTCTTGGGTTGGGG+TGG | 0.508807 | 5_3:+43268965 | None:intergenic |
| CGTCACTCCAGATTCGAAGA+TGG | 0.510121 | 5_3:-43262347 | Msa0812820:three_prime_UTR |
| GGAAGCTGACACGTTCAGCT+AGG | 0.511657 | 5_3:+43266853 | None:intergenic |
| GACGAATTTCAATCATCCGC+AGG | 0.512841 | 5_3:+43262366 | None:intergenic |
| GTGTGAATGTTTCAGTTGGA+GGG | 0.516787 | 5_3:-43265983 | Msa0812820:intron |
| CATTAAGTGTGATTGTTGCA+TGG | 0.528687 | 5_3:-43263803 | Msa0812820:CDS |
| AATATGAGAGAGGTGATGTT+GGG | 0.530332 | 5_3:-43268718 | Msa0812820:CDS |
| GAAGCTGACACGTTCAGCTA+GGG | 0.534246 | 5_3:+43266854 | None:intergenic |
| GGAACTTCACACTATTTGAA+AGG | 0.534618 | 5_3:-43263588 | Msa0812820:CDS |
| ATGAATTAATTCCATGAATG+TGG | 0.538219 | 5_3:+43262153 | None:intergenic |
| TAATTACACTTACCCTTCCA+AGG | 0.541293 | 5_3:+43268635 | None:intergenic |
| GCAACAGCTAAAGGAACAGC+CGG | 0.546306 | 5_3:+43268673 | None:intergenic |
| GGCAGCTCACTCCTTTGTGG+TGG | 0.549103 | 5_3:-43265831 | Msa0812820:CDS |
| TCTCACAGCTTCAGTTTCGA+AGG | 0.549530 | 5_3:+43262298 | None:intergenic |
| AAATATGAGAGAGGTGATGT+TGG | 0.552908 | 5_3:-43268719 | Msa0812820:CDS |
| GGGAATGCTGCAGAACATGC+TGG | 0.585056 | 5_3:-43264357 | Msa0812820:CDS |
| TAATATTGCTATGATCATCT+CGG | 0.588080 | 5_3:+43265932 | None:intergenic |
| GAATTTGATGAAATGTTATG+TGG | 0.590212 | 5_3:+43268817 | None:intergenic |
| TGAGAGAATGGAACCAAGCA+AGG | 0.600148 | 5_3:+43265872 | None:intergenic |
| ATGGATAATGGGTATACGAA+TGG | 0.600851 | 5_3:-43263784 | Msa0812820:CDS |
| ACGACGATAGCTTCAAAGCA+TGG | 0.608256 | 5_3:+43262431 | None:intergenic |
| CTAGGGGAGCAAGTCCAAGT+AGG | 0.616205 | 5_3:+43266871 | None:intergenic |
| ACGAATTTCAATCATCCGCA+GGG | 0.621934 | 5_3:+43262367 | None:intergenic |
| AAGCTGACACGTTCAGCTAG+GGG | 0.628561 | 5_3:+43266855 | None:intergenic |
| TAGGCTGCTTCAGATTCTTG+GGG | 0.629621 | 5_3:-43264423 | Msa0812820:CDS |
| AGCTGCCTAGAACCAAGAGA+AGG | 0.634661 | 5_3:+43265847 | None:intergenic |
| TGTGATGACAAATATGAGAG+AGG | 0.652412 | 5_3:-43268728 | Msa0812820:CDS |
| TGGCTTAGCAAACCTTAAGA+GGG | 0.662643 | 5_3:-43265811 | Msa0812820:CDS |
| GGGCTTCTAAATGCAACTTG+TGG | 0.683635 | 5_3:-43265963 | Msa0812820:CDS |
| TGTGCAGACCTGTAAAGTGA+AGG | 0.687046 | 5_3:+43263704 | None:intergenic |
| GGTTTGCTAAGCCACCACAA+AGG | 0.707409 | 5_3:+43265820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATAATTAAAAAAT+TGG | + | chr5_3:43263199-43263218 | None:intergenic | 0.0% |
| !!! | TAAGAATTTTTTTCTTTTTT+TGG | - | chr5_3:43263293-43263312 | Msa0812820:intron | 10.0% |
| !!! | AATTTGAAATTTCTTAATTT+AGG | + | chr5_3:43265330-43265349 | None:intergenic | 10.0% |
| !!! | AATTTTAATTTAAATGTGAT+TGG | + | chr5_3:43266534-43266553 | None:intergenic | 10.0% |
| !! | AAAATTCAAAATTAGATTAA+TGG | - | chr5_3:43266548-43266567 | Msa0812820:intron | 10.0% |
| !! | AAATTCAAAATTAGATTAAT+GGG | - | chr5_3:43266549-43266568 | Msa0812820:intron | 10.0% |
| !!! | TTATTTTATTATGCATAAAA+GGG | + | chr5_3:43266587-43266606 | None:intergenic | 10.0% |
| !!! | ATCCTTATTTTATTTTTAAA+TGG | - | chr5_3:43267156-43267175 | Msa0812820:intron | 10.0% |
| !! | ATTAGAGATTAATATATATA+TGG | + | chr5_3:43267657-43267676 | None:intergenic | 10.0% |
| !!! | TATATATTAATCTCTAATTT+TGG | - | chr5_3:43267659-43267678 | Msa0812820:intron | 10.0% |
| !!! | ATATATTAATCTCTAATTTT+GGG | - | chr5_3:43267660-43267679 | Msa0812820:intron | 10.0% |
| !!! | ATTTTCTTTCAAAAAATTAA+AGG | - | chr5_3:43268370-43268389 | Msa0812820:intron | 10.0% |
| !!! | TTTTCTTTCAAAAAATTAAA+GGG | - | chr5_3:43268371-43268390 | Msa0812820:intron | 10.0% |
| !! | AAGTCATAATATGAATTAAT+GGG | + | chr5_3:43262425-43262444 | None:intergenic | 15.0% |
| !! | TTATAGATAATTTATCCATT+TGG | + | chr5_3:43262792-43262811 | None:intergenic | 15.0% |
| !!! | AACTGATGAAATTTAAAATA+TGG | - | chr5_3:43262990-43263009 | Msa0812820:intron | 15.0% |
| !!! | ACTGATGAAATTTAAAATAT+GGG | - | chr5_3:43262991-43263010 | Msa0812820:intron | 15.0% |
| !! | AATAATATACTAAAAACCTT+AGG | - | chr5_3:43263465-43263484 | Msa0812820:intron | 15.0% |
| !!! | ACAATTTTTAATTAATCCTA+AGG | + | chr5_3:43263484-43263503 | None:intergenic | 15.0% |
| !! | TTAGGATTAATTAAAAATTG+TGG | - | chr5_3:43263483-43263502 | Msa0812820:intron | 15.0% |
| !! | ATGTATATATTGTAAAACTA+TGG | + | chr5_3:43263559-43263578 | None:intergenic | 15.0% |
| !! | CTATTAAAAATGAAAACTTT+GGG | - | chr5_3:43263899-43263918 | Msa0812820:intron | 15.0% |
| !! | TAAATATATGTTTATAAGTG+GGG | + | chr5_3:43264003-43264022 | None:intergenic | 15.0% |
| !! | CTAAATATATGTTTATAAGT+GGG | + | chr5_3:43264004-43264023 | None:intergenic | 15.0% |
| !! | AAAAAATTATAAGCGATTAA+GGG | + | chr5_3:43264909-43264928 | None:intergenic | 15.0% |
| !! | AAAAAAATTATAAGCGATTA+AGG | + | chr5_3:43264910-43264929 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATTTGTGTGAAA+TGG | - | chr5_3:43265524-43265543 | Msa0812820:intron | 15.0% |
| !! | AGTATAGTAATTAAATTATC+TGG | + | chr5_3:43265934-43265953 | None:intergenic | 15.0% |
| !!! | GTTATTTTATTATGCATAAA+AGG | + | chr5_3:43266588-43266607 | None:intergenic | 15.0% |
| !! | TTATGCATAATAAAATAACT+AGG | - | chr5_3:43266589-43266608 | Msa0812820:intron | 15.0% |
| !! | CACCATTTAAAAATAAAATA+AGG | + | chr5_3:43267161-43267180 | None:intergenic | 15.0% |
| !!! | CTTATTTTATTTTTAAATGG+TGG | - | chr5_3:43267159-43267178 | Msa0812820:intron | 15.0% |
| !!! | GATTTTGTTAAATTTTTTGT+AGG | - | chr5_3:43267418-43267437 | Msa0812820:intron | 15.0% |
| !! | TACTTAAATTTATTTCACAA+AGG | + | chr5_3:43267707-43267726 | None:intergenic | 15.0% |
| !!! | AAAACAAATACTTTTTTCTT+TGG | + | chr5_3:43268014-43268033 | None:intergenic | 15.0% |
| !!! | AAAAAAGTATTTGTTTTTCT+TGG | - | chr5_3:43268017-43268036 | Msa0812820:intron | 15.0% |
| !!! | TTTCATTTCTAAGTTTTTTT+TGG | - | chr5_3:43268256-43268275 | Msa0812820:intron | 15.0% |
| !!! | TTCATTTCTAAGTTTTTTTT+GGG | - | chr5_3:43268257-43268276 | Msa0812820:intron | 15.0% |
| !!! | TAAGTTATTTTAAAGAATAG+TGG | - | chr5_3:43268291-43268310 | Msa0812820:intron | 15.0% |
| !!! | GTAATGTTTTTATTTTTTGA+GGG | + | chr5_3:43268952-43268971 | None:intergenic | 15.0% |
| !!! | TGTAATGTTTTTATTTTTTG+AGG | + | chr5_3:43268953-43268972 | None:intergenic | 15.0% |
| !!! | GATTTTTTAATTTCTCTCTT+GGG | + | chr5_3:43262078-43262097 | None:intergenic | 20.0% |
| !! | GAAGTCATAATATGAATTAA+TGG | + | chr5_3:43262426-43262445 | None:intergenic | 20.0% |
| !!! | TTTGTTAGTTTTTTAAACTG+AGG | - | chr5_3:43262476-43262495 | Msa0812820:intron | 20.0% |
| !! | ACTTATTAGATTAAAAGTCA+TGG | + | chr5_3:43262571-43262590 | None:intergenic | 20.0% |
| !!! | TCTTTTAGTTCATAAATATG+TGG | - | chr5_3:43262955-43262974 | Msa0812820:intron | 20.0% |
| !!! | TTTAAATTTCATCAGTTTTG+TGG | + | chr5_3:43262987-43263006 | None:intergenic | 20.0% |
| !!! | AATGCTGATAAAGATTTTTT+AGG | + | chr5_3:43263262-43263281 | None:intergenic | 20.0% |
| !! | AGTATTTATATCTAACTAAG+TGG | + | chr5_3:43263809-43263828 | None:intergenic | 20.0% |
| !!! | CCAAAGTTTTCATTTTTAAT+AGG | + | chr5_3:43263901-43263920 | None:intergenic | 20.0% |
| !! | CCTATTAAAAATGAAAACTT+TGG | - | chr5_3:43263898-43263917 | Msa0812820:intron | 20.0% |
| !! | CCTAAATATATGTTTATAAG+TGG | + | chr5_3:43264005-43264024 | None:intergenic | 20.0% |
| !! | CCACTTATAAACATATATTT+AGG | - | chr5_3:43264002-43264021 | Msa0812820:intron | 20.0% |
| !!! | ACTCAGTTTATTGAAATTTT+TGG | + | chr5_3:43265012-43265031 | None:intergenic | 20.0% |
| !! | AAAATAATCATATACTCACT+CGG | + | chr5_3:43265259-43265278 | None:intergenic | 20.0% |
| !!! | TCCAGAAATTTCAAATTTTA+TGG | - | chr5_3:43265358-43265377 | Msa0812820:CDS | 20.0% |
| !!! | TCCATAAAATTTGAAATTTC+TGG | + | chr5_3:43265362-43265381 | None:intergenic | 20.0% |
| !! | ACATACATAAATATTCGATA+AGG | - | chr5_3:43265458-43265477 | Msa0812820:intron | 20.0% |
| !! | ATTATTAAATGAACAGAAAC+AGG | - | chr5_3:43265645-43265664 | Msa0812820:intron | 20.0% |
| !! | TTAAGTATTATCTTCATACA+TGG | - | chr5_3:43266159-43266178 | Msa0812820:intron | 20.0% |
| !! | AATCAATCATATATTTGATG+TGG | - | chr5_3:43266226-43266245 | Msa0812820:intron | 20.0% |
| !!! | GAGTACTAATATGTTTATTT+TGG | - | chr5_3:43266489-43266508 | Msa0812820:intron | 20.0% |
| !! | CTTTGTAAATAATTTGGATT+TGG | + | chr5_3:43266743-43266762 | None:intergenic | 20.0% |
| !!! | ATTCAGCTTTGTAAATAATT+TGG | + | chr5_3:43266749-43266768 | None:intergenic | 20.0% |
| !! | ATTATCCAATAATCAATTTC+AGG | - | chr5_3:43267202-43267221 | Msa0812820:intron | 20.0% |
| !!! | TTGTTAAATTTTTTGTAGGA+TGG | - | chr5_3:43267422-43267441 | Msa0812820:intron | 20.0% |
| !!! | TTGTACTACTATTTTTCATA+TGG | + | chr5_3:43267623-43267642 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTGTTTTCACT+TGG | + | chr5_3:43267730-43267749 | None:intergenic | 20.0% |
| !! | TATAAATAGGAAGATATGTT+TGG | + | chr5_3:43268059-43268078 | None:intergenic | 20.0% |
| !! | AAACATATCTTCCTATTTAT+AGG | - | chr5_3:43268058-43268077 | Msa0812820:intron | 20.0% |
| !! | GATTATAGAAACTTCAAAAA+TGG | - | chr5_3:43268158-43268177 | Msa0812820:intron | 20.0% |
| !! | ACAAATAAATTACAAGATCT+TGG | - | chr5_3:43268426-43268445 | Msa0812820:intron | 20.0% |
| !! | ACAAAAAAGAACAAAAAACT+TGG | + | chr5_3:43268536-43268555 | None:intergenic | 20.0% |
| !!! | TTGAATACTTGTATTTTTCT+TGG | - | chr5_3:43268781-43268800 | Msa0812820:CDS | 20.0% |
| !!! | TTGGTTTAACATTATCTTTT+TGG | - | chr5_3:43268838-43268857 | Msa0812820:CDS | 20.0% |
| !!! | GGATTTTTTAATTTCTCTCT+TGG | + | chr5_3:43262079-43262098 | None:intergenic | 25.0% |
| ! | GAATTTGATGAAATGTTATG+TGG | + | chr5_3:43262217-43262236 | None:intergenic | 25.0% |
| !! | AAAGAAATCAGATATGGTTT+TGG | - | chr5_3:43262246-43262265 | Msa0812820:three_prime_UTR | 25.0% |
| !!! | TTTTGGTGACAAATAATGTT+CGG | - | chr5_3:43262263-43262282 | Msa0812820:three_prime_UTR | 25.0% |
| ! | TCATCACATTTCTTAGTATT+TGG | + | chr5_3:43262291-43262310 | None:intergenic | 25.0% |
| !!! | TATGCGATGTATTTTTTTGA+GGG | + | chr5_3:43262764-43262783 | None:intergenic | 25.0% |
| !!! | TTATGCGATGTATTTTTTTG+AGG | + | chr5_3:43262765-43262784 | None:intergenic | 25.0% |
| ! | GAACATACAATATGATGATA+TGG | + | chr5_3:43262907-43262926 | None:intergenic | 25.0% |
| ! | TTAGTTCATAAATATGTGGA+CGG | - | chr5_3:43262959-43262978 | Msa0812820:intron | 25.0% |
| !! | ATTTTTACTGCTCAAAGAAA+TGG | + | chr5_3:43263019-43263038 | None:intergenic | 25.0% |
| !! | TCTCATGTCAATTATTTTCA+AGG | - | chr5_3:43263670-43263689 | Msa0812820:intron | 25.0% |
| ! | AATGCTAAAATTTACATGTC+AGG | - | chr5_3:43263730-43263749 | Msa0812820:CDS | 25.0% |
| ! | ATGCTAAAATTTACATGTCA+GGG | - | chr5_3:43263731-43263750 | Msa0812820:CDS | 25.0% |
| ! | TTAAAAATGAAAACTTTGGG+AGG | - | chr5_3:43263902-43263921 | Msa0812820:intron | 25.0% |
| !!! | CTACGATATGTATTTTGAAA+TGG | + | chr5_3:43264464-43264483 | None:intergenic | 25.0% |
| ! | AGTAAAAAAAATATGGGCAA+AGG | - | chr5_3:43264580-43264599 | Msa0812820:intron | 25.0% |
| !! | AACATTCACACAAATTGTTT+TGG | + | chr5_3:43265039-43265058 | None:intergenic | 25.0% |
| ! | TAATATTGCTATGATCATCT+CGG | + | chr5_3:43265102-43265121 | None:intergenic | 25.0% |
| ! | GCACAATGTGTAATTAAAAA+GGG | + | chr5_3:43265283-43265302 | None:intergenic | 25.0% |
| ! | TGCACAATGTGTAATTAAAA+AGG | + | chr5_3:43265284-43265303 | None:intergenic | 25.0% |
| !! | AAAATTCAAGTTTACAGTCA+AGG | + | chr5_3:43265426-43265445 | None:intergenic | 25.0% |
| ! | TCAATTATTGTGACATAGAA+TGG | - | chr5_3:43265556-43265575 | Msa0812820:intron | 25.0% |
| ! | AAAGCGTATTTGAACATTAA+TGG | + | chr5_3:43265721-43265740 | None:intergenic | 25.0% |
| ! | ATTAATGTTCAAATACGCTT+TGG | - | chr5_3:43265720-43265739 | Msa0812820:intron | 25.0% |
| !!! | TTTTTCGATGAGTTTTCAAT+TGG | + | chr5_3:43265840-43265859 | None:intergenic | 25.0% |
| ! | AAAAATATTTGATGCACAAG+AGG | - | chr5_3:43265855-43265874 | Msa0812820:CDS | 25.0% |
| ! | TTGATGTATCAATACATCAT+AGG | - | chr5_3:43266048-43266067 | Msa0812820:intron | 25.0% |
| ! | TCATATATTTGATGTGGTTA+TGG | - | chr5_3:43266232-43266251 | Msa0812820:intron | 25.0% |
| !! | ATAATTTTGCTACCAATTGT+TGG | - | chr5_3:43266653-43266672 | Msa0812820:intron | 25.0% |
| !! | TAATTTTGCTACCAATTGTT+GGG | - | chr5_3:43266654-43266673 | Msa0812820:intron | 25.0% |
| !! | TATTTGGTTTACTATAATGC+AGG | - | chr5_3:43266838-43266857 | Msa0812820:intron | 25.0% |
| ! | TACTCAAATTTCTATGTTTG+TGG | - | chr5_3:43266892-43266911 | Msa0812820:CDS | 25.0% |
| ! | AAACAAAGTTAGTATACTCT+AGG | + | chr5_3:43267124-43267143 | None:intergenic | 25.0% |
| ! | ATTGGATAATCCAAATTTAG+TGG | + | chr5_3:43267192-43267211 | None:intergenic | 25.0% |
| !!! | TAGATATACTTACTGATTTG+TGG | + | chr5_3:43267527-43267546 | None:intergenic | 25.0% |
| ! | ATTAAACTCTTTCATGTGAA+AGG | - | chr5_3:43267787-43267806 | Msa0812820:intron | 25.0% |
| ! | TTAAACTCTTTCATGTGAAA+GGG | - | chr5_3:43267788-43267807 | Msa0812820:intron | 25.0% |
| !!! | ATTGTAATCTCACTTTTTTG+TGG | + | chr5_3:43267847-43267866 | None:intergenic | 25.0% |
| ! | CATATTCATCTCCTATAAAT+AGG | + | chr5_3:43268072-43268091 | None:intergenic | 25.0% |
| ! | CATATTCATCTCCTATAAAT+AGG | + | chr5_3:43268072-43268091 | None:intergenic | 25.0% |
| ! | CTATTTATAGGAGATGAATA+TGG | - | chr5_3:43268070-43268089 | Msa0812820:intron | 25.0% |
| ! | TATGATGTTGAGAGTTAAAA+TGG | + | chr5_3:43268210-43268229 | None:intergenic | 25.0% |
| ! | CAAGTAATCACAAAAATTGA+CGG | + | chr5_3:43268476-43268495 | None:intergenic | 25.0% |
| !! | TTGTATTTTTCTTGGCAATA+AGG | - | chr5_3:43268789-43268808 | Msa0812820:CDS | 25.0% |
| ! | ATGAATTAATTCCATGAATG+TGG | + | chr5_3:43268881-43268900 | None:intergenic | 25.0% |
| ! | ATAGACTTGTACATGAAATT+GGG | + | chr5_3:43268909-43268928 | None:intergenic | 25.0% |
| ! | TATAGACTTGTACATGAAAT+TGG | + | chr5_3:43268910-43268929 | None:intergenic | 25.0% |
| ! | TTTAATTTCTCTCTTGGGTT+GGG | + | chr5_3:43262073-43262092 | None:intergenic | 30.0% |
| !!! | TTTTAATTTCTCTCTTGGGT+TGG | + | chr5_3:43262074-43262093 | None:intergenic | 30.0% |
| ATCAACACTAGCTAAAACTT+TGG | + | chr5_3:43262100-43262119 | None:intergenic | 30.0% | |
| TGTGAGAAAGAAATCAGATA+TGG | - | chr5_3:43262240-43262259 | Msa0812820:three_prime_UTR | 30.0% | |
| !! | TGATTTTTATAGCCTTGGAA+GGG | - | chr5_3:43262384-43262403 | Msa0812820:three_prime_UTR | 30.0% |
| AAAGTCATGGCATATAAAGA+TGG | + | chr5_3:43262558-43262577 | None:intergenic | 30.0% | |
| TAGTTCATAAATATGTGGAC+GGG | - | chr5_3:43262960-43262979 | Msa0812820:intron | 30.0% | |
| AATATACATACCCTTATACG+AGG | - | chr5_3:43263070-43263089 | Msa0812820:intron | 30.0% | |
| ATATACATACCCTTATACGA+GGG | - | chr5_3:43263071-43263090 | Msa0812820:intron | 30.0% | |
| GGTAGAAATCGATGTATTAT+AGG | - | chr5_3:43263356-43263375 | Msa0812820:intron | 30.0% | |
| ATATAAAGTTGTAGCTCAAG+TGG | - | chr5_3:43263600-43263619 | Msa0812820:intron | 30.0% | |
| TTATTTAAGTCCCTTAACTG+TGG | - | chr5_3:43263639-43263658 | Msa0812820:intron | 30.0% | |
| ! | TTTTGTATGATTGTGTTCTG+AGG | + | chr5_3:43263958-43263977 | None:intergenic | 30.0% |
| ! | TCATACAAAATCGACTTATG+AGG | - | chr5_3:43263968-43263987 | Msa0812820:intron | 30.0% |
| ! | TCTTACTGAAAATTTTCACC+TGG | - | chr5_3:43264340-43264359 | Msa0812820:CDS | 30.0% |
| TACGATTACTCTTTCGTTTA+TGG | - | chr5_3:43264410-43264429 | Msa0812820:CDS | 30.0% | |
| TGATCGCTTTATACATGTTA+AGG | - | chr5_3:43264485-43264504 | Msa0812820:intron | 30.0% | |
| GATCGCTTTATACATGTTAA+GGG | - | chr5_3:43264486-43264505 | Msa0812820:intron | 30.0% | |
| AAAAAAATATGGGCAAAGGT+AGG | - | chr5_3:43264584-43264603 | Msa0812820:intron | 30.0% | |
| AGGTTATGTGAAAATGTGTA+TGG | - | chr5_3:43264604-43264623 | Msa0812820:intron | 30.0% | |
| TTCATAGATATTACTGCTTC+TGG | + | chr5_3:43264652-43264671 | None:intergenic | 30.0% | |
| AGAAGCAGTAATATCTATGA+AGG | - | chr5_3:43264651-43264670 | Msa0812820:intron | 30.0% | |
| TTCTGGTATCAAATACATGT+CGG | + | chr5_3:43264768-43264787 | None:intergenic | 30.0% | |
| ! | GGAGTTTTTGATACATTTGT+GGG | + | chr5_3:43264880-43264899 | None:intergenic | 30.0% |
| ! | TGGAGTTTTTGATACATTTG+TGG | + | chr5_3:43264881-43264900 | None:intergenic | 30.0% |
| ATAAGCGATTAAGGGTAAAA+TGG | + | chr5_3:43264901-43264920 | None:intergenic | 30.0% | |
| ATTTGTGTGAATGTTTCAGT+TGG | - | chr5_3:43265044-43265063 | Msa0812820:intron | 30.0% | |
| !! | AATTCATTGCTTTTGTTGCT+TGG | - | chr5_3:43265676-43265695 | Msa0812820:intron | 30.0% |
| !! | TGACAATTGAAGAGTACTAT+TGG | + | chr5_3:43265767-43265786 | None:intergenic | 30.0% |
| ATTTAATCCACTTATGTGTG+AGG | - | chr5_3:43266332-43266351 | Msa0812820:intron | 30.0% | |
| ! | AAAAAGCAGTGATAGGATTT+TGG | - | chr5_3:43266386-43266405 | Msa0812820:intron | 30.0% |
| ATTAGTACTCTTTACCTCAA+TGG | + | chr5_3:43266479-43266498 | None:intergenic | 30.0% | |
| ATTTGCTTACAAGAACAAAC+TGG | - | chr5_3:43266706-43266725 | Msa0812820:intron | 30.0% | |
| !! | CTGGCTTTAAAATTTCTCAA+AGG | - | chr5_3:43266812-43266831 | Msa0812820:intron | 30.0% |
| !! | AATTTCTCAAAGGCACTATT+TGG | - | chr5_3:43266822-43266841 | Msa0812820:intron | 30.0% |
| ATAATGCAGGACATATCTTT+AGG | - | chr5_3:43266851-43266870 | Msa0812820:intron | 30.0% | |
| !! | ATATCTTTAGGTGTTGCTAT+GGG | - | chr5_3:43266863-43266882 | Msa0812820:intron | 30.0% |
| TGGAACCTGAAATTGATTAT+TGG | + | chr5_3:43267210-43267229 | None:intergenic | 30.0% | |
| AGAGAAAGTAGAATGTATGA+AGG | + | chr5_3:43267356-43267375 | None:intergenic | 30.0% | |
| GTGTTCCTAATCCTATTTAT+AGG | - | chr5_3:43268113-43268132 | Msa0812820:intron | 30.0% | |
| CATCTCCTATAAATAGGATT+AGG | + | chr5_3:43268121-43268140 | None:intergenic | 30.0% | |
| TTTACTGTTGCAGATCATTA+TGG | - | chr5_3:43268572-43268591 | Msa0812820:intron | 30.0% | |
| !! | TCAGATTGTTTTTCTCACAA+CGG | + | chr5_3:43268644-43268663 | None:intergenic | 30.0% |
| ! | CGAAGATGGATTTCTATAAA+TGG | - | chr5_3:43268698-43268717 | Msa0812820:CDS | 30.0% |
| !!! | GTTTTTATTTTTTGAGGGAG+TGG | + | chr5_3:43268947-43268966 | None:intergenic | 30.0% |
| ATTTAACATTCGACGCAATA+GGG | + | chr5_3:43268979-43268998 | None:intergenic | 30.0% | |
| AATTTAACATTCGACGCAAT+AGG | + | chr5_3:43268980-43268999 | None:intergenic | 30.0% | |
| ! | TTAATTTCTCTCTTGGGTTG+GGG | + | chr5_3:43262072-43262091 | None:intergenic | 35.0% |
| TCTTCATTCATGGTTCGAAA+TGG | + | chr5_3:43262169-43262188 | None:intergenic | 35.0% | |
| TCGAACCATGAATGAAGATT+TGG | - | chr5_3:43262171-43262190 | Msa0812820:three_prime_UTR | 35.0% | |
| GTTCTCCAAATCTTCATTCA+TGG | + | chr5_3:43262179-43262198 | None:intergenic | 35.0% | |
| TGTGATGACAAATATGAGAG+AGG | - | chr5_3:43262303-43262322 | Msa0812820:three_prime_UTR | 35.0% | |
| AAATATGAGAGAGGTGATGT+TGG | - | chr5_3:43262312-43262331 | Msa0812820:three_prime_UTR | 35.0% | |
| AATATGAGAGAGGTGATGTT+GGG | - | chr5_3:43262313-43262332 | Msa0812820:three_prime_UTR | 35.0% | |
| !!! | TAAGCTTGTTGTGCTTTTTC+CGG | - | chr5_3:43262339-43262358 | Msa0812820:three_prime_UTR | 35.0% |
| !! | CTGATTTTTATAGCCTTGGA+AGG | - | chr5_3:43262383-43262402 | Msa0812820:three_prime_UTR | 35.0% |
| TAATTACACTTACCCTTCCA+AGG | + | chr5_3:43262399-43262418 | None:intergenic | 35.0% | |
| !!! | AGATGGTTTTGTGATTACTG+AGG | + | chr5_3:43262541-43262560 | None:intergenic | 35.0% |
| ACATCGCATAATCATCCAAA+TGG | - | chr5_3:43262774-43262793 | Msa0812820:intron | 35.0% | |
| ! | CGAGCTTTCTTGCAATTTTA+TGG | - | chr5_3:43262869-43262888 | Msa0812820:intron | 35.0% |
| ! | TTTTAGGCACTACGTATACT+AGG | + | chr5_3:43263246-43263265 | None:intergenic | 35.0% |
| ! | CGATTTCTACCTTTTTCTCA+CGG | + | chr5_3:43263347-43263366 | None:intergenic | 35.0% |
| ! | GTTGAGTCTAAAATAACCAG+TGG | - | chr5_3:43263505-43263524 | Msa0812820:intron | 35.0% |
| ! | AGGTTATCTTTTGTCTGATG+TGG | - | chr5_3:43264022-43264041 | Msa0812820:intron | 35.0% |
| !! | ATTTTTGCTTTGAGCCTACT+TGG | - | chr5_3:43264146-43264165 | Msa0812820:intron | 35.0% |
| ATATGCAAACTTACTCAGTG+AGG | + | chr5_3:43264202-43264221 | None:intergenic | 35.0% | |
| ! | ACTGAAAATTTTCACCTGGA+CGG | - | chr5_3:43264344-43264363 | Msa0812820:CDS | 35.0% |
| AGGCAAATTGCATATTTCAC+CGG | - | chr5_3:43264378-43264397 | Msa0812820:CDS | 35.0% | |
| !! | TTATGGACTAGACTAGTGTA+CGG | - | chr5_3:43264427-43264446 | Msa0812820:intron | 35.0% |
| GCAGTAATATCTATGAAGGT+CGG | - | chr5_3:43264655-43264674 | Msa0812820:intron | 35.0% | |
| !! | ACACAACATGTATTTGGTGT+CGG | + | chr5_3:43264733-43264752 | None:intergenic | 35.0% |
| ACACTGACACAACATGTATT+TGG | + | chr5_3:43264739-43264758 | None:intergenic | 35.0% | |
| TACCAGAACACACTAATTTG+AGG | - | chr5_3:43264780-43264799 | Msa0812820:intron | 35.0% | |
| TTGATACATTTGTGGGTGTA+GGG | + | chr5_3:43264873-43264892 | None:intergenic | 35.0% | |
| TTTGATACATTTGTGGGTGT+AGG | + | chr5_3:43264874-43264893 | None:intergenic | 35.0% | |
| TGAACATTAATGGCAGCAAA+TGG | + | chr5_3:43265711-43265730 | None:intergenic | 35.0% | |
| TTAGTATCTCTCTCAGTGTA+CGG | + | chr5_3:43266091-43266110 | None:intergenic | 35.0% | |
| AATCAAACCTCACACATAAG+TGG | + | chr5_3:43266342-43266361 | None:intergenic | 35.0% | |
| !! | ATGTGTGAGGTTTGATTTTC+AGG | - | chr5_3:43266345-43266364 | Msa0812820:intron | 35.0% |
| GATGATGAAAAAGCAGTGAT+AGG | - | chr5_3:43266379-43266398 | Msa0812820:intron | 35.0% | |
| !!! | GATTTTGGAGTGCATTTAGT+TGG | - | chr5_3:43266401-43266420 | Msa0812820:intron | 35.0% |
| CTTACAAGAACAAACTGGTA+CGG | - | chr5_3:43266711-43266730 | Msa0812820:intron | 35.0% | |
| !! | AGCTTTAAGCTCAATACATC+TGG | - | chr5_3:43266793-43266812 | Msa0812820:intron | 35.0% |
| !! | CATATCTTTAGGTGTTGCTA+TGG | - | chr5_3:43266862-43266881 | Msa0812820:intron | 35.0% |
| ! | TGGCTTTACACCACTAAATT+TGG | - | chr5_3:43267179-43267198 | Msa0812820:intron | 35.0% |
| CATGCAACAATCACACTTAA+TGG | + | chr5_3:43267230-43267249 | None:intergenic | 35.0% | |
| CATTAAGTGTGATTGTTGCA+TGG | - | chr5_3:43267228-43267247 | Msa0812820:intron | 35.0% | |
| TGTGATTGTTGCATGGATAA+TGG | - | chr5_3:43267235-43267254 | Msa0812820:intron | 35.0% | |
| GTGATTGTTGCATGGATAAT+GGG | - | chr5_3:43267236-43267255 | Msa0812820:intron | 35.0% | |
| !! | ATGGATAATGGGTATACGAA+TGG | - | chr5_3:43267247-43267266 | Msa0812820:intron | 35.0% |
| ! | AATGGGTATACGAATGGATT+TGG | - | chr5_3:43267253-43267272 | Msa0812820:intron | 35.0% |
| GACTTCAATCTTCTTGAAAC+TGG | - | chr5_3:43267275-43267294 | Msa0812820:intron | 35.0% | |
| GGAACTTCACACTATTTGAA+AGG | - | chr5_3:43267443-43267462 | Msa0812820:intron | 35.0% | |
| !!! | GTAATCTCACTTTTTTGTGG+TGG | + | chr5_3:43267844-43267863 | None:intergenic | 35.0% |
| TCCAAACACATACCAAACTA+TGG | - | chr5_3:43267903-43267922 | Msa0812820:intron | 35.0% | |
| ACCATAGTTTGGTATGTGTT+TGG | + | chr5_3:43267907-43267926 | None:intergenic | 35.0% | |
| ! | GTCTCATTTTCACCATAGTT+TGG | + | chr5_3:43267918-43267937 | None:intergenic | 35.0% |
| AGTTATAGCAATCCTCTATG+TGG | + | chr5_3:43267949-43267968 | None:intergenic | 35.0% | |
| ! | TTTTTCTTTGGACAACCAAC+AGG | + | chr5_3:43268002-43268021 | None:intergenic | 35.0% |
| ! | TAGGAAGATATGTTTGGAGT+AGG | + | chr5_3:43268053-43268072 | None:intergenic | 35.0% |
| TCACAAAAATTGACGGTTCA+TGG | + | chr5_3:43268469-43268488 | None:intergenic | 35.0% | |
| TATAGTGCACCATCAAACAA+AGG | - | chr5_3:43268502-43268521 | Msa0812820:intron | 35.0% | |
| ! | GAATTCACTCCTTTGTTTGA+TGG | + | chr5_3:43268514-43268533 | None:intergenic | 35.0% |
| !! | AGATTGTTTTTCTCACAACG+GGG | + | chr5_3:43268642-43268661 | None:intergenic | 35.0% |
| !! | CAGATTGTTTTTCTCACAAC+GGG | + | chr5_3:43268643-43268662 | None:intergenic | 35.0% |
| TAGAAATCCATCTTCGAATC+TGG | + | chr5_3:43268694-43268713 | None:intergenic | 35.0% | |
| !!! | CTTGGCAATAAGGCTTTTTT+TGG | - | chr5_3:43268799-43268818 | Msa0812820:CDS | 35.0% |
| !!! | GCTTTTTTTGGTCAAGTTCT+TGG | - | chr5_3:43268811-43268830 | Msa0812820:CDS | 35.0% |
| TGGTCAAGTTCTTGGAAATT+TGG | - | chr5_3:43268819-43268838 | Msa0812820:CDS | 35.0% | |
| !!! | GTTTTGATTCTCCACATTCA+TGG | - | chr5_3:43268867-43268886 | Msa0812820:CDS | 35.0% |
| AAATCAGCAGCAACAGCTAA+AGG | + | chr5_3:43262370-43262389 | None:intergenic | 40.0% | |
| !!! | GCTGCTGATTTTTATAGCCT+TGG | - | chr5_3:43262379-43262398 | Msa0812820:three_prime_UTR | 40.0% |
| ATTACTGAGGTGGTGAAGTT+AGG | + | chr5_3:43262528-43262547 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGTGATTACTGAGG+TGG | + | chr5_3:43262538-43262557 | None:intergenic | 40.0% |
| ! | CTTTGATAGCCGTGAGAAAA+AGG | - | chr5_3:43263335-43263354 | Msa0812820:intron | 40.0% |
| ! | GAGTCTAAAATAACCAGTGG+CGG | - | chr5_3:43263508-43263527 | Msa0812820:intron | 40.0% |
| !! | AGCCAGCAGTATTTTTATGG+AGG | - | chr5_3:43263531-43263550 | Msa0812820:CDS | 40.0% |
| !! | GCCAGCAGTATTTTTATGGA+GGG | - | chr5_3:43263532-43263551 | Msa0812820:CDS | 40.0% |
| !! | CCAGCAGTATTTTTATGGAG+GGG | - | chr5_3:43263533-43263552 | Msa0812820:CDS | 40.0% |
| AAGTTGTAGCTCAAGTGGTT+TGG | - | chr5_3:43263605-43263624 | Msa0812820:intron | 40.0% | |
| GAGTTTCGAACCACAGTTAA+GGG | + | chr5_3:43263652-43263671 | None:intergenic | 40.0% | |
| AGAGTTTCGAACCACAGTTA+AGG | + | chr5_3:43263653-43263672 | None:intergenic | 40.0% | |
| GCTATGTGTCATGAACTAAG+TGG | + | chr5_3:43263782-43263801 | None:intergenic | 40.0% | |
| !! | TGTATGATTGTGTTCTGAGG+CGG | + | chr5_3:43263955-43263974 | None:intergenic | 40.0% |
| AGGCTCAAAGCAAAAATCCA+AGG | + | chr5_3:43264143-43264162 | None:intergenic | 40.0% | |
| GAAAGAGTAATCGTACCTGT+TGG | + | chr5_3:43264405-43264424 | None:intergenic | 40.0% | |
| ACCAAATACGACACAGACAT+GGG | - | chr5_3:43264704-43264723 | Msa0812820:intron | 40.0% | |
| CTCCTCAAATTAGTGTGTTC+TGG | + | chr5_3:43264785-43264804 | None:intergenic | 40.0% | |
| !! | AGGAGTATTCGTGTTTCGTA+GGG | - | chr5_3:43264800-43264819 | Msa0812820:intron | 40.0% |
| TGTGTGAATGTTTCAGTTGG+AGG | - | chr5_3:43265047-43265066 | Msa0812820:intron | 40.0% | |
| GTGTGAATGTTTCAGTTGGA+GGG | - | chr5_3:43265048-43265067 | Msa0812820:intron | 40.0% | |
| CAAGAGAAGGTTTGAGAGAA+TGG | + | chr5_3:43265174-43265193 | None:intergenic | 40.0% | |
| CATTCTCTCAAACCTTCTCT+TGG | - | chr5_3:43265172-43265191 | Msa0812820:intron | 40.0% | |
| ! | TCAAACCTTCTCTTGGTTCT+AGG | - | chr5_3:43265179-43265198 | Msa0812820:CDS | 40.0% |
| TGGCTTAGCAAACCTTAAGA+GGG | - | chr5_3:43265220-43265239 | Msa0812820:CDS | 40.0% | |
| CATATCTTTGCTCCCTCTTA+AGG | + | chr5_3:43265235-43265254 | None:intergenic | 40.0% | |
| ATGTTCAAATACGCTTTGGC+TGG | - | chr5_3:43265724-43265743 | Msa0812820:intron | 40.0% | |
| TGTTCAAATACGCTTTGGCT+GGG | - | chr5_3:43265725-43265744 | Msa0812820:intron | 40.0% | |
| !! | TGTGAGGTTTGATTTTCAGG+TGG | - | chr5_3:43266348-43266367 | Msa0812820:intron | 40.0% |
| TTGGAGTGCATTTAGTTGGT+TGG | - | chr5_3:43266405-43266424 | Msa0812820:intron | 40.0% | |
| AGTGCATTTAGTTGGTTGGT+GGG | - | chr5_3:43266409-43266428 | Msa0812820:intron | 40.0% | |
| TGTGCTTTCTGAGTATGTTG+TGG | - | chr5_3:43266450-43266469 | Msa0812820:intron | 40.0% | |
| GTGCTTTCTGAGTATGTTGT+GGG | - | chr5_3:43266451-43266470 | Msa0812820:intron | 40.0% | |
| CTTCTTGAAACTGGATGTCT+TGG | - | chr5_3:43267284-43267303 | Msa0812820:intron | 40.0% | |
| TGTTACAGCCTTCACTTTAC+AGG | - | chr5_3:43267319-43267338 | Msa0812820:intron | 40.0% | |
| ! | AGACTCATTTTGCCACATAG+AGG | - | chr5_3:43267934-43267953 | Msa0812820:intron | 40.0% |
| ACTCTCTGTCTCAAAAGAAG+TGG | - | chr5_3:43268229-43268248 | Msa0812820:intron | 40.0% | |
| AGAAAAACAATCTGACCCTG+CGG | - | chr5_3:43268649-43268668 | Msa0812820:CDS | 40.0% | |
| ACGAATTTCAATCATCCGCA+GGG | + | chr5_3:43268667-43268686 | None:intergenic | 40.0% | |
| CAAGTGCTACCCTCGTATAA+GGG | + | chr5_3:43263083-43263102 | None:intergenic | 45.0% | |
| CTTATACGAGGGTAGCACTT+GGG | - | chr5_3:43263082-43263101 | Msa0812820:intron | 45.0% | |
| GAAAGCCACTTGTGACATTG+TGG | + | chr5_3:43263136-43263155 | None:intergenic | 45.0% | |
| GCACTACGTATACTAGGCAA+TGG | + | chr5_3:43263240-43263259 | None:intergenic | 45.0% | |
| !! | CGGAGCCAGCAGTATTTTTA+TGG | - | chr5_3:43263528-43263547 | Msa0812820:CDS | 45.0% |
| CCCCTCCATAAAAATACTGC+TGG | + | chr5_3:43263536-43263555 | None:intergenic | 45.0% | |
| ! | GTTTTTCTCCATCGTAGCCT+TGG | - | chr5_3:43264123-43264142 | Msa0812820:intron | 45.0% |
| GCAAAAATCCAAGGCTACGA+TGG | + | chr5_3:43264134-43264153 | None:intergenic | 45.0% | |
| AGTAATCGTACCTGTTGGTC+CGG | + | chr5_3:43264400-43264419 | None:intergenic | 45.0% | |
| CACCAAATACGACACAGACA+TGG | - | chr5_3:43264703-43264722 | Msa0812820:intron | 45.0% | |
| TCCCATGTCTGTGTCGTATT+TGG | + | chr5_3:43264708-43264727 | None:intergenic | 45.0% | |
| !! | GAGGAGTATTCGTGTTTCGT+AGG | - | chr5_3:43264799-43264818 | Msa0812820:intron | 45.0% |
| GGGCTTCTAAATGCAACTTG+TGG | - | chr5_3:43265068-43265087 | Msa0812820:intron | 45.0% | |
| GTTGTCAAGTTCTCCTTGCT+TGG | - | chr5_3:43265146-43265165 | Msa0812820:intron | 45.0% | |
| TGAGAGAATGGAACCAAGCA+AGG | + | chr5_3:43265162-43265181 | None:intergenic | 45.0% | |
| GTGGCTTAGCAAACCTTAAG+AGG | - | chr5_3:43265219-43265238 | Msa0812820:CDS | 45.0% | |
| GTTCAAATACGCTTTGGCTG+GGG | - | chr5_3:43265726-43265745 | Msa0812820:intron | 45.0% | |
| TTCAAATACGCTTTGGCTGG+GGG | - | chr5_3:43265727-43265746 | Msa0812820:intron | 45.0% | |
| GAGTGCATTTAGTTGGTTGG+TGG | - | chr5_3:43266408-43266427 | Msa0812820:intron | 45.0% | |
| !! | TTGGTTGGTGGGTATGACAT+TGG | - | chr5_3:43266420-43266439 | Msa0812820:intron | 45.0% |
| GTATGTTGTGGGAACCATTG+AGG | - | chr5_3:43266462-43266481 | Msa0812820:intron | 45.0% | |
| ACTAGGCTGCTTCAGATTCT+TGG | - | chr5_3:43266606-43266625 | Msa0812820:intron | 45.0% | |
| CTAGGCTGCTTCAGATTCTT+GGG | - | chr5_3:43266607-43266626 | Msa0812820:intron | 45.0% | |
| TAGGCTGCTTCAGATTCTTG+GGG | - | chr5_3:43266608-43266627 | Msa0812820:intron | 45.0% | |
| TCTGCAGCATTCCCAACAAT+TGG | + | chr5_3:43266668-43266687 | None:intergenic | 45.0% | |
| TGTGCAGACCTGTAAAGTGA+AGG | + | chr5_3:43267330-43267349 | None:intergenic | 45.0% | |
| ACGACGATAGCTTCAAAGCA+TGG | + | chr5_3:43268603-43268622 | None:intergenic | 45.0% | |
| GACGAATTTCAATCATCCGC+AGG | + | chr5_3:43268668-43268687 | None:intergenic | 45.0% | |
| TCTCACAGCTTCAGTTTCGA+AGG | + | chr5_3:43268736-43268755 | None:intergenic | 45.0% | |
| !! | TTCAATAATTAATTATTTAA+AGG | + | chr5_3:43263447-43263466 | None:intergenic | 5.0% |
| !! | ATATATTAGTAAAAAAAATA+TGG | - | chr5_3:43264573-43264592 | Msa0812820:intron | 5.0% |
| !! | TATATTAGTAAAAAAAATAT+GGG | - | chr5_3:43264574-43264593 | Msa0812820:intron | 5.0% |
| !! | ATTTCTCTCTTGGGTTGGGG+TGG | + | chr5_3:43262069-43262088 | None:intergenic | 50.0% |
| GCAACAGCTAAAGGAACAGC+CGG | + | chr5_3:43262361-43262380 | None:intergenic | 50.0% | |
| CCAAGTGCTACCCTCGTATA+AGG | + | chr5_3:43263084-43263103 | None:intergenic | 50.0% | |
| CCTTATACGAGGGTAGCACT+TGG | - | chr5_3:43263081-43263100 | Msa0812820:intron | 50.0% | |
| GCCAACCACAATGTCACAAG+TGG | - | chr5_3:43263128-43263147 | Msa0812820:intron | 50.0% | |
| GCCACTTGTGACATTGTGGT+TGG | + | chr5_3:43263132-43263151 | None:intergenic | 50.0% | |
| AAGCTGACACGTTCAGCTAG+GGG | + | chr5_3:43264179-43264198 | None:intergenic | 50.0% | |
| GAAGCTGACACGTTCAGCTA+GGG | + | chr5_3:43264180-43264199 | None:intergenic | 50.0% | |
| GCATATTTCACCGGACCAAC+AGG | - | chr5_3:43264387-43264406 | Msa0812820:CDS | 50.0% | |
| ! | CAGTTTTACCTTGTACCCCC+AGG | - | chr5_3:43264840-43264859 | Msa0812820:intron | 50.0% |
| ! | TTTTACCTTGTACCCCCAGG+CGG | - | chr5_3:43264843-43264862 | Msa0812820:intron | 50.0% |
| AGCTGCCTAGAACCAAGAGA+AGG | + | chr5_3:43265187-43265206 | None:intergenic | 50.0% | |
| !! | GGTTTGCTAAGCCACCACAA+AGG | + | chr5_3:43265214-43265233 | None:intergenic | 50.0% |
| CAATCTCTCCTTGCTCCTGT+TGG | - | chr5_3:43267984-43268003 | Msa0812820:intron | 50.0% | |
| TTGGACAACCAACAGGAGCA+AGG | + | chr5_3:43267995-43268014 | None:intergenic | 50.0% | |
| CGTCACTCCAGATTCGAAGA+TGG | - | chr5_3:43268684-43268703 | Msa0812820:CDS | 50.0% | |
| GTAGCACTTGGGTGACACTG+TGG | - | chr5_3:43263093-43263112 | Msa0812820:intron | 55.0% | |
| CACTTGGGTGACACTGTGGT+TGG | - | chr5_3:43263097-43263116 | Msa0812820:intron | 55.0% | |
| !! | GACACTGTGGTTGGTGACAC+TGG | - | chr5_3:43263106-43263125 | Msa0812820:intron | 55.0% |
| !! | TGTGTTCTGAGGCGGAGCTA+GGG | + | chr5_3:43263947-43263966 | None:intergenic | 55.0% |
| !! | TTGTGTTCTGAGGCGGAGCT+AGG | + | chr5_3:43263948-43263967 | None:intergenic | 55.0% |
| CTAGGGGAGCAAGTCCAAGT+AGG | + | chr5_3:43264163-43264182 | None:intergenic | 55.0% | |
| GGAAGCTGACACGTTCAGCT+AGG | + | chr5_3:43264181-43264200 | None:intergenic | 55.0% | |
| ! | CCTTCAAGTTCATGCCGTCC+AGG | + | chr5_3:43264361-43264380 | None:intergenic | 55.0% |
| CCTGGACGGCATGAACTTGA+AGG | - | chr5_3:43264358-43264377 | Msa0812820:CDS | 55.0% | |
| CTAGGCAGCTCACTCCTTTG+TGG | - | chr5_3:43265197-43265216 | Msa0812820:CDS | 55.0% | |
| GGGAATGCTGCAGAACATGC+TGG | - | chr5_3:43266674-43266693 | Msa0812820:intron | 55.0% | |
| !! | AATACTGCTGGCTCCGCCAC+TGG | + | chr5_3:43263524-43263543 | None:intergenic | 60.0% |
| ! | AGGGGGACATGGGAGGTACA+TGG | + | chr5_3:43263928-43263947 | None:intergenic | 60.0% |
| !! | TGTTCTGAGGCGGAGCTAGG+GGG | + | chr5_3:43263945-43263964 | None:intergenic | 60.0% |
| !! | GTGTTCTGAGGCGGAGCTAG+GGG | + | chr5_3:43263946-43263965 | None:intergenic | 60.0% |
| GGCAGCTCACTCCTTTGTGG+TGG | - | chr5_3:43265200-43265219 | Msa0812820:CDS | 60.0% | |
| AGGCGGAGCTAGGGGGACAT+GGG | + | chr5_3:43263938-43263957 | None:intergenic | 65.0% | |
| ! | GATCTCCGCCTGGGGGTACA+AGG | + | chr5_3:43264851-43264870 | None:intergenic | 65.0% |
| GTGTAGGGATCTCCGCCTGG+GGG | + | chr5_3:43264858-43264877 | None:intergenic | 65.0% | |
| GGTGTAGGGATCTCCGCCTG+GGG | + | chr5_3:43264859-43264878 | None:intergenic | 65.0% | |
| GGGTGTAGGGATCTCCGCCT+GGG | + | chr5_3:43264860-43264879 | None:intergenic | 65.0% | |
| TGGGTGTAGGGATCTCCGCC+TGG | + | chr5_3:43264861-43264880 | None:intergenic | 65.0% | |
| CGGAGCTAGGGGGACATGGG+AGG | + | chr5_3:43263935-43263954 | None:intergenic | 70.0% | |
| GAGGCGGAGCTAGGGGGACA+TGG | + | chr5_3:43263939-43263958 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 43262045 | 43269008 | 43262045 | ID=Msa0812820;Name=Msa0812820 |
| chr5_3 | mRNA | 43262045 | 43269008 | 43262045 | ID=Msa0812820-mRNA-1;Parent=Msa0812820;Name=Msa0812820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=91|0.62|0.88|1|0.75|0.66|9|374|361 |
| chr5_3 | exon | 43262045 | 43262097 | 43262045 | ID=Msa0812820-mRNA-1:exon:13281;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43262122 | 43262468 | 43262122 | ID=Msa0812820-mRNA-1:exon:13280;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43263520 | 43263613 | 43263520 | ID=Msa0812820-mRNA-1:exon:13279;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43263713 | 43263829 | 43263713 | ID=Msa0812820-mRNA-1:exon:13278;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43264326 | 43264442 | 43264326 | ID=Msa0812820-mRNA-1:exon:13277;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43265177 | 43265392 | 43265177 | ID=Msa0812820-mRNA-1:exon:13276;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43265794 | 43265990 | 43265794 | ID=Msa0812820-mRNA-1:exon:13275;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43266865 | 43266913 | 43266865 | ID=Msa0812820-mRNA-1:exon:13274;Parent=Msa0812820-mRNA-1 |
| chr5_3 | exon | 43268648 | 43269008 | 43268648 | ID=Msa0812820-mRNA-1:exon:13273;Parent=Msa0812820-mRNA-1 |
| chr5_3 | five_prime_UTR | 43268918 | 43269008 | 43268918 | ID=Msa0812820-mRNA-1:five_prime_utr;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43268648 | 43268917 | 43268648 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43266865 | 43266913 | 43266865 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43265794 | 43265990 | 43265794 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43265177 | 43265392 | 43265177 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43264326 | 43264442 | 43264326 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43263713 | 43263829 | 43263713 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43263520 | 43263613 | 43263520 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | CDS | 43262443 | 43262468 | 43262443 | ID=Msa0812820-mRNA-1:cds;Parent=Msa0812820-mRNA-1 |
| chr5_3 | three_prime_UTR | 43262122 | 43262442 | 43262122 | ID=Msa0812820-mRNA-1:three_prime_utr;Parent=Msa0812820-mRNA-1 |
| chr5_3 | three_prime_UTR | 43262045 | 43262097 | 43262045 | ID=Msa0812820-mRNA-1:three_prime_utr;Parent=Msa0812820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
