AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319830 MtrunA17_Chr2g0294601 97.297 370 10 0 1 370 25 394 0.0 742
Msa0319830 MtrunA17_Chr2g0294591 76.945 347 76 2 24 370 20 362 0.0 541
Msa0319830 MtrunA17_Chr4g0038981 54.819 332 141 4 17 347 5 328 3.11e-120 350
Msa0319830 MtrunA17_Chr4g0039071 55.312 320 138 4 30 346 19 336 9.70e-120 351
Msa0319830 MtrunA17_Chr4g0038971 54.518 332 142 4 17 347 5 328 5.97e-116 340
Msa0319830 MtrunA17_Chr4g0038961 53.916 332 144 4 17 347 5 328 4.56e-114 335
Msa0319830 MtrunA17_Chr4g0039011 51.754 342 155 5 10 349 17 350 3.44e-113 334
Msa0319830 MtrunA17_Chr4g0038941 54.375 320 135 6 30 347 47 357 9.24e-110 325
Msa0319830 MtrunA17_Chr1g0174261 53.546 282 127 3 64 343 1 280 3.31e-101 303
Msa0319830 MtrunA17_Chr4g0039021 49.664 298 139 6 55 347 1 292 4.48e-94 283
Msa0319830 MtrunA17_Chr7g0250301 43.598 328 169 7 22 345 1 316 2.26e-81 251
Msa0319830 MtrunA17_Chr5g0439251 43.077 325 170 9 30 343 20 340 2.98e-74 238
Msa0319830 MtrunA17_Chr2g0294581 64.516 186 54 4 24 206 66 242 5.05e-70 221
Msa0319830 MtrunA17_Chr2g0294581 76.829 82 18 1 267 347 203 284 2.73e-37 135
Msa0319830 MtrunA17_Chr6g0487261 36.578 339 200 8 35 363 27 360 6.08e-70 227
Msa0319830 MtrunA17_Chr1g0177171 39.375 320 179 8 35 343 38 353 3.44e-69 225
Msa0319830 MtrunA17_Chr8g0389741 37.117 326 191 7 35 350 28 349 6.02e-69 224
Msa0319830 MtrunA17_Chr4g0003281 38.272 324 191 6 36 351 41 363 7.47e-68 219
Msa0319830 MtrunA17_Chr3g0119541 40.841 333 180 10 33 352 24 352 2.12e-67 216
Msa0319830 MtrunA17_Chr4g0064021 35.174 344 200 10 36 367 27 359 1.13e-66 215
Msa0319830 MtrunA17_Chr4g0034901 38.596 342 196 9 17 347 10 348 8.91e-66 215
Msa0319830 MtrunA17_Chr4g0043851 37.143 350 210 7 8 349 5 352 9.99e-65 211
Msa0319830 MtrunA17_Chr3g0144531 37.318 343 201 9 17 348 9 348 3.22e-64 211
Msa0319830 MtrunA17_Chr2g0321511 34.530 362 215 10 17 362 11 366 1.15e-63 207
Msa0319830 MtrunA17_Chr7g0250321 41.463 287 161 4 13 298 6 286 1.28e-63 204
Msa0319830 MtrunA17_Chr1g0189111 37.309 327 196 7 28 347 24 348 1.40e-63 208
Msa0319830 MtrunA17_Chr8g0339191 35.673 342 203 10 22 350 17 354 3.29e-63 209
Msa0319830 MtrunA17_Chr7g0234821 34.545 330 200 9 34 350 25 351 3.24e-62 206
Msa0319830 MtrunA17_Chr1g0161011 38.081 344 200 7 17 349 6 347 1.36e-61 205
Msa0319830 MtrunA17_Chr4g0026321 36.025 322 196 7 36 349 30 349 1.91e-61 202
Msa0319830 MtrunA17_Chr1g0146831 37.861 346 199 10 35 370 31 370 4.96e-61 201
Msa0319830 MtrunA17_Chr1g0155001 36.364 330 200 7 31 351 20 348 6.98e-61 201
Msa0319830 MtrunA17_Chr7g0223961 38.199 322 183 12 35 347 23 337 8.93e-59 197
Msa0319830 MtrunA17_Chr5g0434591 35.714 364 219 9 18 369 5 365 2.06e-58 197
Msa0319830 MtrunA17_Chr4g0069801 34.463 354 217 9 9 352 4 352 1.14e-56 192
Msa0319830 MtrunA17_Chr4g0075031 35.780 327 195 8 35 349 45 368 2.12e-56 192
Msa0319830 MtrunA17_Chr4g0046311 33.828 337 203 10 31 351 19 351 1.07e-55 189
Msa0319830 MtrunA17_Chr3g0110371 35.112 356 213 10 17 359 5 355 1.48e-54 186
Msa0319830 MtrunA17_Chr3g0121271 33.333 345 214 9 15 347 8 348 8.60e-54 185
Msa0319830 MtrunA17_Chr2g0285901 36.196 326 193 9 33 346 18 340 6.55e-53 180
Msa0319830 MtrunA17_Chr8g0378621 33.978 362 221 10 13 363 7 361 3.61e-52 180
Msa0319830 MtrunA17_Chr2g0290821 33.841 328 206 6 31 348 24 350 1.06e-51 179
Msa0319830 MtrunA17_Chr7g0253091 31.818 352 226 7 17 358 10 357 2.43e-51 178
Msa0319830 MtrunA17_Chr8g0383311 31.790 324 212 5 35 350 43 365 2.77e-51 178
Msa0319830 MtrunA17_Chr3g0138741 32.967 364 223 10 5 355 4 359 1.19e-50 176
Msa0319830 MtrunA17_Chr4g0043511 36.310 336 197 12 30 354 57 386 1.65e-49 174
Msa0319830 MtrunA17_Chr4g0076581 31.909 351 226 8 8 348 6 353 5.06e-49 172
Msa0319830 MtrunA17_Chr1g0148391 32.378 349 221 8 17 355 10 353 8.51e-49 171
Msa0319830 MtrunA17_Chr3g0129341 31.461 356 223 10 10 350 5 354 1.65e-48 171
Msa0319830 MtrunA17_Chr4g0062771 31.268 355 229 8 17 358 14 366 5.66e-48 169
Msa0319830 MtrunA17_Chr6g0461601 32.298 322 204 6 35 344 26 345 4.63e-47 166
Msa0319830 MtrunA17_Chr3g0105981 31.611 329 214 8 28 348 20 345 2.15e-44 158
Msa0319830 MtrunA17_Chr2g0306311 27.394 376 235 6 14 351 6 381 6.54e-42 153
Msa0319830 MtrunA17_Chr5g0436361 33.220 295 178 12 60 343 62 348 2.52e-35 132
Msa0319830 MtrunA17_Chr4g0018861 57.778 90 34 3 258 343 82 171 5.66e-27 106
Msa0319830 MtrunA17_Chr4g0018861 56.790 81 32 1 17 97 7 84 5.56e-24 98.6
Msa0319830 MtrunA17_Chr4g0018771 57.955 88 35 2 258 343 86 173 2.25e-26 105
Msa0319830 MtrunA17_Chr4g0018771 66.667 63 21 0 35 97 26 88 1.12e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319830 AT4G16260.1 61.494 348 125 5 13 356 1 343 1.09e-151 431
Msa0319830 AT4G16260.2 63.636 319 108 4 41 356 1 314 1.41e-142 407
Msa0319830 AT3G57240.1 56.875 320 127 6 30 347 30 340 9.23e-115 337
Msa0319830 AT3G57270.1 51.524 328 152 4 23 347 16 339 7.84e-111 327
Msa0319830 AT3G57260.1 50.440 341 156 5 12 347 6 338 1.76e-109 324
Msa0319830 AT3G57260.2 50.440 341 156 5 12 347 22 354 2.79e-109 324
Msa0319830 AT5G56590.1 38.024 334 187 8 34 353 25 352 9.96e-76 243
Msa0319830 AT5G20390.1 39.873 316 179 6 31 341 29 338 1.33e-75 238
Msa0319830 AT2G16230.1 40.308 325 185 6 31 347 21 344 2.31e-71 231
Msa0319830 AT5G20340.1 38.924 316 182 6 31 341 39 348 1.10e-70 225
Msa0319830 AT5G20330.1 39.748 317 180 6 30 341 29 339 7.31e-70 223
Msa0319830 AT2G26600.1 35.625 320 197 6 36 347 35 353 1.97e-69 223
Msa0319830 AT1G33220.1 38.245 319 185 7 11 324 11 322 1.86e-67 216
Msa0319830 AT3G15800.1 36.578 339 203 8 36 364 44 380 7.49e-67 217
Msa0319830 AT4G26830.2 37.243 341 197 9 30 359 24 358 5.12e-66 216
Msa0319830 AT4G26830.1 36.620 355 207 10 16 359 7 354 7.11e-66 216
Msa0319830 AT2G05790.1 39.024 328 187 8 33 350 23 347 8.85e-66 216
Msa0319830 AT5G55180.1 38.485 330 182 10 35 350 27 349 1.43e-65 215
Msa0319830 AT5G55180.2 38.485 330 182 10 35 350 27 349 1.68e-65 215
Msa0319830 AT5G42720.1 36.812 345 206 8 19 352 8 351 6.41e-65 213
Msa0319830 AT5G20560.1 36.308 325 196 7 18 337 18 336 1.66e-64 209
Msa0319830 AT4G29360.1 39.755 327 185 7 33 350 25 348 1.74e-64 214
Msa0319830 AT4G29360.2 39.755 327 185 7 33 350 35 358 1.87e-64 214
Msa0319830 AT4G34480.2 39.053 338 193 8 22 348 11 346 2.92e-64 209
Msa0319830 AT1G77790.1 38.012 342 195 8 10 343 7 339 2.46e-63 206
Msa0319830 AT4G34480.1 39.053 338 193 8 22 348 11 346 1.78e-62 208
Msa0319830 AT1G32860.1 36.810 326 192 8 34 348 28 350 1.79e-62 206
Msa0319830 AT5G42100.2 38.710 341 189 10 19 346 14 347 4.75e-62 205
Msa0319830 AT5G42100.1 38.710 341 189 10 19 346 14 347 4.94e-62 205
Msa0319830 AT2G01630.2 36.765 340 198 8 32 359 20 354 4.21e-60 199
Msa0319830 AT5G24318.4 37.572 346 195 11 16 346 6 345 8.69e-60 197
Msa0319830 AT2G01630.3 36.765 340 198 8 32 359 20 354 1.82e-59 199
Msa0319830 AT5G24318.2 37.572 346 195 11 16 346 6 345 8.85e-59 197
Msa0319830 AT2G01630.1 36.765 340 198 8 32 359 20 354 9.12e-59 198
Msa0319830 AT5G24318.1 37.572 346 195 11 16 346 6 345 1.24e-58 197
Msa0319830 AT4G18340.2 35.775 355 206 10 8 348 7 353 2.13e-58 194
Msa0319830 AT1G77780.1 37.179 312 186 7 36 343 25 330 3.02e-58 193
Msa0319830 AT4G18340.1 35.904 376 221 11 8 368 7 377 3.20e-58 194
Msa0319830 AT3G61810.1 36.503 326 187 8 35 348 55 372 5.61e-58 193
Msa0319830 AT1G11820.1 34.848 330 200 8 32 349 41 367 1.11e-57 192
Msa0319830 AT3G07320.1 34.139 331 196 9 36 350 26 350 1.20e-57 194
Msa0319830 AT2G27500.2 33.127 323 207 6 35 349 29 350 2.07e-57 191
Msa0319830 AT2G27500.1 33.127 323 207 6 35 349 29 350 4.61e-57 191
Msa0319830 AT1G11820.3 34.848 330 200 8 32 349 41 367 1.73e-56 192
Msa0319830 AT1G11820.2 34.848 330 200 8 32 349 41 367 3.63e-56 192
Msa0319830 AT1G30080.2 34.000 350 215 9 10 346 7 353 5.93e-56 188
Msa0319830 AT5G58090.1 34.132 334 207 8 33 356 20 350 6.44e-56 190
Msa0319830 AT1G30080.1 34.286 350 214 9 10 346 7 353 1.06e-55 188
Msa0319830 AT1G66250.1 36.391 327 194 7 29 343 24 348 2.21e-54 187
Msa0319830 AT5G18220.1 31.564 358 234 6 9 358 4 358 1.03e-53 184
Msa0319830 AT4G17180.1 34.018 341 206 8 20 348 7 340 1.40e-53 184
Msa0319830 AT2G26600.2 36.154 260 157 6 96 347 1 259 3.62e-53 178
Msa0319830 AT3G46570.1 39.466 337 185 13 22 346 14 343 8.21e-53 179
Msa0319830 AT4G14080.1 32.727 330 207 9 33 350 40 366 2.26e-51 178
Msa0319830 AT2G19440.2 32.448 339 216 8 35 363 21 356 3.61e-51 177
Msa0319830 AT2G19440.1 32.448 339 216 8 35 363 21 356 3.61e-51 177
Msa0319830 AT4G31140.1 34.365 323 201 7 35 348 27 347 5.38e-51 177
Msa0319830 AT3G55430.1 37.092 337 192 15 28 354 22 348 5.43e-51 176
Msa0319830 AT3G23770.1 33.832 334 205 9 33 352 35 366 9.77e-50 174
Msa0319830 AT3G13560.4 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0319830 AT3G13560.1 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0319830 AT3G13560.2 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0319830 AT3G13560.5 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0319830 AT3G13560.3 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0319830 AT1G64760.1 31.737 334 215 8 35 358 25 355 1.20e-48 171
Msa0319830 AT1G64760.2 31.737 334 215 8 35 358 25 355 1.20e-48 171
Msa0319830 AT3G04010.1 31.831 355 227 8 15 358 13 363 3.41e-48 170
Msa0319830 AT5G20870.1 31.143 350 225 7 17 351 12 360 8.31e-48 169
Msa0319830 AT5G58480.1 32.132 333 213 6 25 347 16 345 9.00e-48 169
Msa0319830 AT5G64790.1 30.973 339 221 7 22 350 15 350 2.12e-47 168
Msa0319830 AT3G24330.1 30.000 340 227 7 25 354 29 367 2.55e-46 165
Msa0319830 AT2G27500.3 32.601 273 175 6 85 349 1 272 9.84e-45 156
Msa0319830 AT2G39640.1 33.140 344 214 12 9 346 6 339 1.68e-44 161
Msa0319830 AT3G55780.1 32.817 323 195 13 60 366 60 376 3.32e-38 141
Msa0319830 AT4G34480.3 40.000 235 130 7 123 348 3 235 8.24e-35 132
Msa0319830 AT5G24318.3 38.278 209 116 7 147 346 2 206 6.13e-32 122

Find 110 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTGACATGACCCTTAT+TGG 0.130417 2_4:+19877781 Msa0319830:CDS
TTATCGCTTGATATATATTT+TGG 0.139583 2_4:-19877720 None:intergenic
CCAGAATTGGAGAAACATTT+TGG 0.146550 2_4:+19878258 Msa0319830:CDS
AAAGAAATGTATTGAATTTC+TGG 0.164011 2_4:+19877605 Msa0319830:CDS
CCAAAATGTTTCTCCAATTC+TGG 0.169992 2_4:-19878258 None:intergenic
GGCTTCTCCTCTCCTTCTAT+TGG 0.189245 2_4:+19874818 Msa0319830:CDS
TCTCCAATTCTGGACTCTTT+TGG 0.221583 2_4:-19878248 None:intergenic
GTCCAGTTGGAGGTTCTTCC+TGG 0.237518 2_4:+19877671 Msa0319830:CDS
AAACTCATTCCCTCCATCTA+AGG 0.248242 2_4:+19877804 Msa0319830:CDS
TTACCAACATGGCTAAAATA+AGG 0.277500 2_4:-19877916 None:intergenic
AGGCTTTGAAGGTCGGAATT+AGG 0.299238 2_4:-19877547 None:intergenic
GCTTCTCCTCTCCTTCTATT+GGG 0.305499 2_4:+19874819 Msa0319830:CDS
ATTATATCAGATGCTCAAAT+AGG 0.310799 2_4:+19877367 Msa0319830:intron
TCAGGCATTGAACTCATTCT+TGG 0.314744 2_4:+19877520 Msa0319830:CDS
GTTCTTTCAGAAATGATGTT+AGG 0.316504 2_4:+19877827 Msa0319830:CDS
CTAAATGCATTAAGAAATTC+AGG 0.318002 2_4:+19877502 Msa0319830:CDS
AAGAAGTACCCATTTGGATT+TGG 0.328985 2_4:+19878303 Msa0319830:CDS
GCATTTAGAGCAGCTTGATT+AGG 0.354084 2_4:-19877487 None:intergenic
ACATAGCATCAAATAAGTTT+TGG 0.363057 2_4:-19878014 None:intergenic
AACCGATCCCAGTGTTATCT+AGG 0.365306 2_4:-19878056 None:intergenic
TTTCACTTCACCGGGTGTTA+TGG 0.366594 2_4:+19877969 Msa0319830:CDS
GGATTTGGTGGGGAAAGAAA+TGG 0.371102 2_4:+19878318 Msa0319830:CDS
AGATCCTTTCATTGGATACT+TGG 0.375910 2_4:+19877858 Msa0319830:CDS
GATTTGGTGGGGAAAGAAAT+GGG 0.380181 2_4:+19878319 Msa0319830:CDS
TTGTGAACAATCCCAATAGA+AGG 0.380689 2_4:-19874830 None:intergenic
AGATCTATAACTTCGTTTGC+CGG 0.381564 2_4:-19877424 None:intergenic
TTTCTGAAAGAACCCTTAGA+TGG 0.395615 2_4:-19877817 None:intergenic
AAGGTACTCCACGAAGGCCT+TGG 0.400880 2_4:+19878187 Msa0319830:CDS
AGTTGGTGGCTAGGCTTTGA+AGG 0.409122 2_4:-19877558 None:intergenic
GCATACCTAGATCCTTTCAT+TGG 0.410172 2_4:+19877850 Msa0319830:CDS
AAACAAAAGAAGTACCCATT+TGG 0.414004 2_4:+19878297 Msa0319830:CDS
GAGGGAATGAGTTTCCAATA+AGG 0.416360 2_4:-19877795 None:intergenic
GAACCAAAAGAGTCCAGAAT+TGG 0.421071 2_4:+19878245 Msa0319830:CDS
CTCTGATAATGCACGTCAAT+GGG 0.427457 2_4:+19877579 Msa0319830:CDS
CTTTCCCCACCAAATCCAAA+TGG 0.434776 2_4:-19878312 None:intergenic
ATTTGATGCTATGTTGGATT+CGG 0.441997 2_4:+19878023 Msa0319830:CDS
CTTCTTTCTTTGCTCCAACC+AGG 0.443871 2_4:+19874784 Msa0319830:CDS
ATGGTACAAGACGGTCCAAA+TGG 0.444159 2_4:+19877988 Msa0319830:CDS
AGGAGTATGTTATGGTATGA+TGG 0.444271 2_4:+19877387 Msa0319830:CDS
ACTCTGATAATGCACGTCAA+TGG 0.445056 2_4:+19877578 Msa0319830:CDS
TCCAACCAGGAGGTTCTCCT+TGG 0.446401 2_4:+19874797 Msa0319830:CDS
TTCTTTCAGAAATGATGTTA+GGG 0.448198 2_4:+19877828 Msa0319830:CDS
AAACTTATTTGATGCTATGT+TGG 0.449549 2_4:+19878017 Msa0319830:CDS
ATTGGATACTTGGTATATGC+AGG 0.452948 2_4:+19877868 Msa0319830:CDS
TTGATTCGTCATGTTGGTAA+AGG 0.455676 2_4:+19878168 Msa0319830:CDS
AGTATCCAATGAAAGGATCT+AGG 0.460946 2_4:-19877855 None:intergenic
TACCAACATGGCTAAAATAA+GGG 0.471112 2_4:-19877915 None:intergenic
AAGTACCCATTTGGATTTGG+TGG 0.473093 2_4:+19878306 Msa0319830:CDS
TAGATAACACTGGGATCGGT+TGG 0.473307 2_4:+19878058 Msa0319830:CDS
AAATCTTCATGATCAAATCA+AGG 0.476242 2_4:+19877750 Msa0319830:CDS
AGCCAGGAAGAACCTCCAAC+TGG 0.478746 2_4:-19877673 None:intergenic
TAAAACATATTGTGCTAGCC+AGG 0.496486 2_4:-19877689 None:intergenic
TCTGTTGCCCAAGGCCTTCG+TGG 0.497067 2_4:-19878195 None:intergenic
CCAAACCTGCTGTGGGAATG+AGG 0.498024 2_4:-19874857 None:intergenic
AGGTACTCCACGAAGGCCTT+GGG 0.499202 2_4:+19878188 Msa0319830:CDS
GGGTAAACATTGACAAGTAA+AGG 0.501897 2_4:-19877895 None:intergenic
GCTCAAATAGGAGTATGTTA+TGG 0.506502 2_4:+19877379 Msa0319830:CDS
GAGAGTGGTTGGCCCTCTGA+TGG 0.506895 2_4:+19878099 Msa0319830:CDS
AGATAACACTGGGATCGGTT+GGG 0.511148 2_4:+19878059 Msa0319830:CDS
AATGTTGTTGTATCTGAGAG+TGG 0.513764 2_4:+19878084 Msa0319830:CDS
AGGGAATGAGTTTCCAATAA+GGG 0.515316 2_4:-19877794 None:intergenic
TTTCCCCACCAAATCCAAAT+GGG 0.522115 2_4:-19878311 None:intergenic
GGAGTATGTTATGGTATGAT+GGG 0.531605 2_4:+19877388 Msa0319830:CDS
CATTATCAGAGTTGGTGGCT+AGG 0.533624 2_4:-19877567 None:intergenic
AGTACCCATTTGGATTTGGT+GGG 0.536863 2_4:+19878307 Msa0319830:CDS
ACGTGCATTATCAGAGTTGG+TGG 0.536916 2_4:-19877572 None:intergenic
AAAATCAAGTATATTGCAGT+TGG 0.537070 2_4:+19877637 Msa0319830:CDS
GGTGAAGTGAAAAGAGCATA+AGG 0.538337 2_4:-19877958 None:intergenic
CTGAAAGAACCCTTAGATGG+AGG 0.548180 2_4:-19877814 None:intergenic
GGTGGCTAGGCTTTGAAGGT+CGG 0.549115 2_4:-19877554 None:intergenic
GATAGAGACCAAACCTGCTG+TGG 0.553318 2_4:-19874865 None:intergenic
AACTCATTCCCTCCATCTAA+GGG 0.555801 2_4:+19877805 Msa0319830:CDS
TTGACGTGCATTATCAGAGT+TGG 0.556118 2_4:-19877575 None:intergenic
TGAAAGAACCCTTAGATGGA+GGG 0.556958 2_4:-19877813 None:intergenic
GCCAAGGAGAACCTCCTGGT+TGG 0.558627 2_4:-19874798 None:intergenic
CATGACGAATCAAATTATCA+AGG 0.559453 2_4:-19878158 None:intergenic
TAGAAGGAGAGGAGAAGCCA+AGG 0.559699 2_4:-19874814 None:intergenic
GATAATTTGATTCGTCATGT+TGG 0.559706 2_4:+19878162 Msa0319830:CDS
TGGTACAAGACGGTCCAAAT+GGG 0.563902 2_4:+19877989 Msa0319830:CDS
TATACCAAGTATCCAATGAA+AGG 0.564230 2_4:-19877862 None:intergenic
CTGGTTGGAGCAAAGAAAGA+AGG 0.564398 2_4:-19874783 None:intergenic
GCCCTAGATAACACTGGGAT+CGG 0.564508 2_4:+19878054 Msa0319830:CDS
AGAAATGGGGAAATTGTCAA+TGG 0.564590 2_4:+19878333 Msa0319830:CDS
ACCGATCCCAGTGTTATCTA+GGG 0.565705 2_4:-19878055 None:intergenic
ATAAACCTCATTCCCACAGC+AGG 0.569800 2_4:+19874852 Msa0319830:CDS
ATATAAGTTTCTGTTGCCCA+AGG 0.574099 2_4:-19878204 None:intergenic
TATCGCGCGGGTTACCAACA+TGG 0.575765 2_4:-19877927 None:intergenic
GTACCCATTTGGATTTGGTG+GGG 0.578076 2_4:+19878308 Msa0319830:CDS
ATTTGGTGGGGAAAGAAATG+GGG 0.581919 2_4:+19878320 Msa0319830:CDS
AACAATCCCAATAGAAGGAG+AGG 0.583975 2_4:-19874825 None:intergenic
CCGTCTTGTACCATAACACC+CGG 0.586536 2_4:-19877979 None:intergenic
TTGTTGTATCTGAGAGTGGT+TGG 0.587177 2_4:+19878088 Msa0319830:CDS
CTTTCTTTGCTCCAACCAGG+AGG 0.587925 2_4:+19874787 Msa0319830:CDS
AGTGGTTGGCCCTCTGATGG+AGG 0.593041 2_4:+19878102 Msa0319830:CDS
CATGCAGCCCTAGATAACAC+TGG 0.595342 2_4:+19878048 Msa0319830:CDS
GGTAATGAAGTGAGTCCAGT+TGG 0.595633 2_4:+19877658 Msa0319830:CDS
AATGAAGTGAGTCCAGTTGG+AGG 0.598323 2_4:+19877661 Msa0319830:CDS
AGAAGCCAAGGAGAACCTCC+TGG 0.598809 2_4:-19874802 None:intergenic
AGTAGCCGCTCCTCCATCAG+AGG 0.623869 2_4:-19878112 None:intergenic
ATGCAGCCCTAGATAACACT+GGG 0.632794 2_4:+19878049 Msa0319830:CDS
GATGGGAAACAATCTACCAC+CGG 0.634717 2_4:+19877405 Msa0319830:CDS
ATAGAGACCAAACCTGCTGT+GGG 0.642306 2_4:-19874864 None:intergenic
TTGGCCCTCTGATGGAGGAG+CGG 0.647493 2_4:+19878107 Msa0319830:CDS
TCTATAACTTCGTTTGCCGG+TGG 0.654807 2_4:-19877421 None:intergenic
GTAGCCGCTCCTCCATCAGA+GGG 0.655173 2_4:-19878111 None:intergenic
AAGGAAGAGATATATCGCGC+GGG 0.669918 2_4:-19877939 None:intergenic
TAAGGAAGAGATATATCGCG+CGG 0.679001 2_4:-19877940 None:intergenic
AATAAGGGTCATGTCAATAG+CGG 0.686579 2_4:-19877779 None:intergenic
CCGGGTGTTATGGTACAAGA+CGG 0.687212 2_4:+19877979 Msa0319830:CDS
TTGGTAAAGGTACTCCACGA+AGG 0.718049 2_4:+19878181 Msa0319830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTATTAATAA+CGG - chr2_4:19876684-19876703 None:intergenic 0.0%
!!! GATTTTTTTTTTTTAAAAGA+AGG + chr2_4:19876578-19876597 Msa0319830:intron 10.0%
!! TTCTTTCAAAAAAAAAAAAT+CGG + chr2_4:19876760-19876779 Msa0319830:intron 10.0%
!! TATTAATGATGTATAATTTA+GGG - chr2_4:19877200-19877219 None:intergenic 10.0%
!!! TTTTATAATAAAAATGGTAT+AGG - chr2_4:19877271-19877290 None:intergenic 10.0%
!!! TTTTATTTATCTTTCTTTTT+TGG + chr2_4:19878463-19878482 Msa0319830:three_prime_UTR 10.0%
!!! TTTATTTATCTTTCTTTTTT+GGG + chr2_4:19878464-19878483 Msa0319830:three_prime_UTR 10.0%
!! ATGACATAATAAAAAAGATA+AGG + chr2_4:19875020-19875039 Msa0319830:intron 15.0%
!!! ACTTATCATTAATCTTTTTT+TGG - chr2_4:19875271-19875290 None:intergenic 15.0%
!!! ATTTCTAGTTTGTATAAATA+GGG - chr2_4:19876169-19876188 None:intergenic 15.0%
!!! AATTTCTAGTTTGTATAAAT+AGG - chr2_4:19876170-19876189 None:intergenic 15.0%
!!! ATTTTTATTGGTGTTAAATT+AGG - chr2_4:19876868-19876887 None:intergenic 15.0%
!!! TGCATCTATTAATTTTTTTT+AGG + chr2_4:19877051-19877070 Msa0319830:intron 15.0%
!! GTATTAATGATGTATAATTT+AGG - chr2_4:19877201-19877220 None:intergenic 15.0%
!!! ATTTTGTTTTTAATAGTGTG+AGG + chr2_4:19875292-19875311 Msa0319830:intron 20.0%
!! TGCTTAATATGATTCAATTA+TGG + chr2_4:19875594-19875613 Msa0319830:intron 20.0%
!! GCTTAATATGATTCAATTAT+GGG + chr2_4:19875595-19875614 Msa0319830:intron 20.0%
!! TAAAATCTTTACACATAACA+TGG - chr2_4:19875621-19875640 None:intergenic 20.0%
!! ATATAAGTCCAAGTTATATT+AGG - chr2_4:19876270-19876289 None:intergenic 20.0%
!! TTGGACTTATATTATTCTAA+TGG + chr2_4:19876278-19876297 Msa0319830:intron 20.0%
!! TGGACTTATATTATTCTAAT+GGG + chr2_4:19876279-19876298 Msa0319830:intron 20.0%
!!! TTTTTTTTTAAAAGAAGGTG+TGG + chr2_4:19876583-19876602 Msa0319830:intron 20.0%
!! ATATAACATATACAATGACA+TGG + chr2_4:19876635-19876654 Msa0319830:intron 20.0%
!!! ATGAAGATGTCTATTTTTAT+TGG - chr2_4:19876880-19876899 None:intergenic 20.0%
!!! TTGATGATATAAGTTATTGT+TGG + chr2_4:19877026-19877045 Msa0319830:intron 20.0%
!! TGATGATATAAGTTATTGTT+GGG + chr2_4:19877027-19877046 Msa0319830:intron 20.0%
!!! CTTAATTTGAGTGTTTAAAT+GGG - chr2_4:19877145-19877164 None:intergenic 20.0%
!!! ACTTAATTTGAGTGTTTAAA+TGG - chr2_4:19877146-19877165 None:intergenic 20.0%
!!! CATCATTAATACCTTTTTTT+CGG + chr2_4:19877209-19877228 Msa0319830:intron 20.0%
!! TATAAAGTTATCCGAAAAAA+AGG - chr2_4:19877223-19877242 None:intergenic 20.0%
!! AAAGAAATGTATTGAATTTC+TGG + chr2_4:19877605-19877624 Msa0319830:CDS 20.0%
!!! TATCGCTTGATATATATTTT+GGG - chr2_4:19877722-19877741 None:intergenic 20.0%
!!! TTATCGCTTGATATATATTT+TGG - chr2_4:19877723-19877742 None:intergenic 20.0%
! AACAATGCATAAAATATGCA+AGG + chr2_4:19875220-19875239 Msa0319830:intron 25.0%
!!! CATTAATCTTTTTTTGGTAG+TGG - chr2_4:19875265-19875284 None:intergenic 25.0%
! TAGAAAAAGTTTAAGTAAGC+CGG - chr2_4:19875401-19875420 None:intergenic 25.0%
! TAAAACCTAGTTCAATTTAC+AGG + chr2_4:19875987-19876006 Msa0319830:intron 25.0%
!!! TCAGTTTTAGTGATTTTGTA+AGG + chr2_4:19876018-19876037 Msa0319830:intron 25.0%
!!! AGTAATTTCTCCTTTTTTGT+AGG - chr2_4:19876061-19876080 None:intergenic 25.0%
!! AAGGAGAAATTACTCTAAAA+AGG + chr2_4:19876067-19876086 Msa0319830:intron 25.0%
! TTCTTCATTCATTCATTTGA+TGG + chr2_4:19876126-19876145 Msa0319830:intron 25.0%
! ATTCATCACCTAATATAACT+TGG + chr2_4:19876259-19876278 Msa0319830:intron 25.0%
! AAAAAAAGCCGTATTATAGA+TGG - chr2_4:19876844-19876863 None:intergenic 25.0%
! AATTTGGGTGTTTATAAGAT+TGG + chr2_4:19876912-19876931 Msa0319830:intron 25.0%
!!! TATAAGATTGGTGCTTTTAA+TGG + chr2_4:19876924-19876943 Msa0319830:intron 25.0%
! ACAAGTAAAGATGATAGAAA+CGG - chr2_4:19876952-19876971 None:intergenic 25.0%
! TTTCTATCATCTTTACTTGT+AGG + chr2_4:19876952-19876971 Msa0319830:intron 25.0%
! ATTATATCAGATGCTCAAAT+AGG + chr2_4:19877367-19877386 Msa0319830:intron 25.0%
! CTAAATGCATTAAGAAATTC+AGG + chr2_4:19877502-19877521 Msa0319830:CDS 25.0%
!!! ATATACTTGATTTTGACACT+AGG - chr2_4:19877631-19877650 None:intergenic 25.0%
! AAAATCAAGTATATTGCAGT+TGG + chr2_4:19877637-19877656 Msa0319830:CDS 25.0%
! AAATCTTCATGATCAAATCA+AGG + chr2_4:19877750-19877769 Msa0319830:CDS 25.0%
! TTCTTTCAGAAATGATGTTA+GGG + chr2_4:19877828-19877847 Msa0319830:CDS 25.0%
!! ACATAGCATCAAATAAGTTT+TGG - chr2_4:19878017-19878036 None:intergenic 25.0%
! AAACTTATTTGATGCTATGT+TGG + chr2_4:19878017-19878036 Msa0319830:CDS 25.0%
! GACATGTAAGAAAAAAATCA+AGG + chr2_4:19878387-19878406 Msa0319830:exon 25.0%
!!! TTTTTTGGGTGTAGAAAATT+TGG + chr2_4:19878478-19878497 Msa0319830:three_prime_UTR 25.0%
!! AAGGCTCAAAAAGTATTTAC+AGG - chr2_4:19875346-19875365 None:intergenic 30.0%
GACATTTATTTCGAAACGAA+GGG - chr2_4:19875507-19875526 None:intergenic 30.0%
!! CGTTTGTTATAATAGCAAGT+TGG + chr2_4:19875526-19875545 Msa0319830:intron 30.0%
!! TGTTATAATAGCAAGTTGGT+CGG + chr2_4:19875530-19875549 Msa0319830:intron 30.0%
! TTTGATGGTACCTACAAAAA+AGG + chr2_4:19876048-19876067 Msa0319830:intron 30.0%
GAGTCATTGTTTAGTTGTTA+GGG - chr2_4:19876201-19876220 None:intergenic 30.0%
TGAGTCATTGTTTAGTTGTT+AGG - chr2_4:19876202-19876221 None:intergenic 30.0%
TAAACAATGACTCATCACAA+TGG + chr2_4:19876208-19876227 Msa0319830:intron 30.0%
ACATCAAAGTCTAATTGAAG+TGG - chr2_4:19876414-19876433 None:intergenic 30.0%
ATAATGCACAATCCATTAAG+AGG + chr2_4:19876543-19876562 Msa0319830:intron 30.0%
GAGTTAGACCATCTATAATA+CGG + chr2_4:19876833-19876852 Msa0319830:intron 30.0%
GTTCTTTCAGAAATGATGTT+AGG + chr2_4:19877827-19877846 Msa0319830:CDS 30.0%
TATACCAAGTATCCAATGAA+AGG - chr2_4:19877865-19877884 None:intergenic 30.0%
TACCAACATGGCTAAAATAA+GGG - chr2_4:19877918-19877937 None:intergenic 30.0%
TTACCAACATGGCTAAAATA+AGG - chr2_4:19877919-19877938 None:intergenic 30.0%
!! AATAAGTTTTGGTACCCATT+TGG - chr2_4:19878006-19878025 None:intergenic 30.0%
ATTTGATGCTATGTTGGATT+CGG + chr2_4:19878023-19878042 Msa0319830:CDS 30.0%
CATGACGAATCAAATTATCA+AGG - chr2_4:19878161-19878180 None:intergenic 30.0%
! GATAATTTGATTCGTCATGT+TGG + chr2_4:19878162-19878181 Msa0319830:CDS 30.0%
!! GGGTACTTCTTTTGTTTATT+AGG - chr2_4:19878294-19878313 None:intergenic 30.0%
!! AAACAAAAGAAGTACCCATT+TGG + chr2_4:19878297-19878316 Msa0319830:CDS 30.0%
TTGTGAACAATCCCAATAGA+AGG - chr2_4:19874833-19874852 None:intergenic 35.0%
GGTCTCTATCTATATAGAGA+TGG + chr2_4:19874878-19874897 Msa0319830:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr2_4:19875225-19875244 Msa0319830:intron 35.0%
!!! AATCTTTTTTTGGTAGTGGC+CGG - chr2_4:19875261-19875280 None:intergenic 35.0%
CGACATTTATTTCGAAACGA+AGG - chr2_4:19875508-19875527 None:intergenic 35.0%
!! GTTATAATAGCAAGTTGGTC+GGG + chr2_4:19875531-19875550 Msa0319830:intron 35.0%
!! TTATAATAGCAAGTTGGTCG+GGG + chr2_4:19875532-19875551 Msa0319830:intron 35.0%
AAATCCTCAAGTATGGCATA+TGG + chr2_4:19875765-19875784 Msa0319830:intron 35.0%
ACACACCTGTAAATTGAACT+AGG - chr2_4:19875995-19876014 None:intergenic 35.0%
!! TTGTAAGGTACCACTTTTGA+TGG + chr2_4:19876033-19876052 Msa0319830:intron 35.0%
TTTGTAGGTACCATCAAAAG+TGG - chr2_4:19876046-19876065 None:intergenic 35.0%
GATGAATCATGCTTTCTAGA+AGG - chr2_4:19876246-19876265 None:intergenic 35.0%
! TTATTCTAATGGGCCTATCA+TGG + chr2_4:19876289-19876308 Msa0319830:intron 35.0%
GGAATGTAATGATCCATGAT+AGG - chr2_4:19876305-19876324 None:intergenic 35.0%
CATGGATCATTACATTCCAT+TGG + chr2_4:19876307-19876326 Msa0319830:intron 35.0%
TGATAAGCACTATCTGTCAT+GGG - chr2_4:19876450-19876469 None:intergenic 35.0%
ATGATAAGCACTATCTGTCA+TGG - chr2_4:19876451-19876470 None:intergenic 35.0%
TGTACGTCTCTCTATAATTG+AGG - chr2_4:19876719-19876738 None:intergenic 35.0%
TCATCGTGACAACAACAATT+TGG + chr2_4:19876896-19876915 Msa0319830:intron 35.0%
CATCGTGACAACAACAATTT+GGG + chr2_4:19876897-19876916 Msa0319830:intron 35.0%
ACAAAATAAGTGACATGTGC+CGG + chr2_4:19877114-19877133 Msa0319830:intron 35.0%
! GCTCAAATAGGAGTATGTTA+TGG + chr2_4:19877379-19877398 Msa0319830:CDS 35.0%
! AGGAGTATGTTATGGTATGA+TGG + chr2_4:19877387-19877406 Msa0319830:CDS 35.0%
GGAGTATGTTATGGTATGAT+GGG + chr2_4:19877388-19877407 Msa0319830:CDS 35.0%
AGATCTATAACTTCGTTTGC+CGG - chr2_4:19877427-19877446 None:intergenic 35.0%
TAAAACATATTGTGCTAGCC+AGG - chr2_4:19877692-19877711 None:intergenic 35.0%
!! TGATATATATTTTGGGTGGC+AGG - chr2_4:19877715-19877734 None:intergenic 35.0%
!! CGCTTGATATATATTTTGGG+TGG - chr2_4:19877719-19877738 None:intergenic 35.0%
AATAAGGGTCATGTCAATAG+CGG - chr2_4:19877782-19877801 None:intergenic 35.0%
AGGGAATGAGTTTCCAATAA+GGG - chr2_4:19877797-19877816 None:intergenic 35.0%
! TTTCTGAAAGAACCCTTAGA+TGG - chr2_4:19877820-19877839 None:intergenic 35.0%
AGTATCCAATGAAAGGATCT+AGG - chr2_4:19877858-19877877 None:intergenic 35.0%
AGATCCTTTCATTGGATACT+TGG + chr2_4:19877858-19877877 Msa0319830:CDS 35.0%
ATTGGATACTTGGTATATGC+AGG + chr2_4:19877868-19877887 Msa0319830:CDS 35.0%
GGGTAAACATTGACAAGTAA+AGG - chr2_4:19877898-19877917 None:intergenic 35.0%
!!! TACCCTTATTTTAGCCATGT+TGG + chr2_4:19877913-19877932 Msa0319830:CDS 35.0%
! TTATGCTCTTTTCACTTCAC+CGG + chr2_4:19877960-19877979 Msa0319830:CDS 35.0%
AATGTTGTTGTATCTGAGAG+TGG + chr2_4:19878084-19878103 Msa0319830:CDS 35.0%
! TTGATTCGTCATGTTGGTAA+AGG + chr2_4:19878168-19878187 Msa0319830:CDS 35.0%
ATATAAGTTTCTGTTGCCCA+AGG - chr2_4:19878207-19878226 None:intergenic 35.0%
CCAAAATGTTTCTCCAATTC+TGG - chr2_4:19878261-19878280 None:intergenic 35.0%
! CCAGAATTGGAGAAACATTT+TGG + chr2_4:19878258-19878277 Msa0319830:CDS 35.0%
!! AAGAAGTACCCATTTGGATT+TGG + chr2_4:19878303-19878322 Msa0319830:CDS 35.0%
AGAAATGGGGAAATTGTCAA+TGG + chr2_4:19878333-19878352 Msa0319830:CDS 35.0%
!! CAAGGTTTTCAAGATTTGAG+TGG + chr2_4:19878405-19878424 Msa0319830:three_prime_UTR 35.0%
AACAATCCCAATAGAAGGAG+AGG - chr2_4:19874828-19874847 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr2_4:19875226-19875245 Msa0319830:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr2_4:19875227-19875246 Msa0319830:intron 40.0%
!!! ATCTTTTTTTGGTAGTGGCC+GGG - chr2_4:19875260-19875279 None:intergenic 40.0%
TTTGAGCCTTGAGATCTGTT+TGG + chr2_4:19875356-19875375 Msa0319830:intron 40.0%
TGCCATACTTGAGGATTTGA+GGG - chr2_4:19875763-19875782 None:intergenic 40.0%
ATGCCATACTTGAGGATTTG+AGG - chr2_4:19875764-19875783 None:intergenic 40.0%
! GCTTTTCAATTACCACCTTG+AGG - chr2_4:19876352-19876371 None:intergenic 40.0%
ACTAAAGCCACACCTCTTAA+TGG - chr2_4:19876558-19876577 None:intergenic 40.0%
!! AAAAGAAGGTGTGGCTTTAG+TGG + chr2_4:19876592-19876611 Msa0319830:intron 40.0%
GAGAGACGTACACAAACAAT+CGG + chr2_4:19876727-19876746 Msa0319830:intron 40.0%
! GCATTTAGAGCAGCTTGATT+AGG - chr2_4:19877490-19877509 None:intergenic 40.0%
!! TCAGGCATTGAACTCATTCT+TGG + chr2_4:19877520-19877539 Msa0319830:CDS 40.0%
TTGACGTGCATTATCAGAGT+TGG - chr2_4:19877578-19877597 None:intergenic 40.0%
! ACTCTGATAATGCACGTCAA+TGG + chr2_4:19877578-19877597 Msa0319830:CDS 40.0%
! CTCTGATAATGCACGTCAAT+GGG + chr2_4:19877579-19877598 Msa0319830:CDS 40.0%
GCTATTGACATGACCCTTAT+TGG + chr2_4:19877781-19877800 Msa0319830:CDS 40.0%
GAGGGAATGAGTTTCCAATA+AGG - chr2_4:19877798-19877817 None:intergenic 40.0%
AAACTCATTCCCTCCATCTA+AGG + chr2_4:19877804-19877823 Msa0319830:CDS 40.0%
AACTCATTCCCTCCATCTAA+GGG + chr2_4:19877805-19877824 Msa0319830:CDS 40.0%
TGAAAGAACCCTTAGATGGA+GGG - chr2_4:19877816-19877835 None:intergenic 40.0%
GCATACCTAGATCCTTTCAT+TGG + chr2_4:19877850-19877869 Msa0319830:CDS 40.0%
TAAGGAAGAGATATATCGCG+CGG - chr2_4:19877943-19877962 None:intergenic 40.0%
! GGTGAAGTGAAAAGAGCATA+AGG - chr2_4:19877961-19877980 None:intergenic 40.0%
! TATGCTCTTTTCACTTCACC+GGG + chr2_4:19877961-19877980 Msa0319830:CDS 40.0%
TTGTTGTATCTGAGAGTGGT+TGG + chr2_4:19878088-19878107 Msa0319830:CDS 40.0%
GAACCAAAAGAGTCCAGAAT+TGG + chr2_4:19878245-19878264 Msa0319830:CDS 40.0%
! TCTCCAATTCTGGACTCTTT+TGG - chr2_4:19878251-19878270 None:intergenic 40.0%
AAGTACCCATTTGGATTTGG+TGG + chr2_4:19878306-19878325 Msa0319830:CDS 40.0%
! AGTACCCATTTGGATTTGGT+GGG + chr2_4:19878307-19878326 Msa0319830:CDS 40.0%
TTTCCCCACCAAATCCAAAT+GGG - chr2_4:19878314-19878333 None:intergenic 40.0%
!! GATTTGGTGGGGAAAGAAAT+GGG + chr2_4:19878319-19878338 Msa0319830:CDS 40.0%
! ATTTGGTGGGGAAAGAAATG+GGG + chr2_4:19878320-19878339 Msa0319830:CDS 40.0%
CTGGTTGGAGCAAAGAAAGA+AGG - chr2_4:19874786-19874805 None:intergenic 45.0%
CTTCTTTCTTTGCTCCAACC+AGG + chr2_4:19874784-19874803 Msa0319830:CDS 45.0%
GCTTCTCCTCTCCTTCTATT+GGG + chr2_4:19874819-19874838 Msa0319830:CDS 45.0%
ATAAACCTCATTCCCACAGC+AGG + chr2_4:19874852-19874871 Msa0319830:CDS 45.0%
ATAGAGACCAAACCTGCTGT+GGG - chr2_4:19874867-19874886 None:intergenic 45.0%
! CCAACTGAGCTAAGCTTTTG+AGG - chr2_4:19875197-19875216 None:intergenic 45.0%
CCTCAAAAGCTTAGCTCAGT+TGG + chr2_4:19875194-19875213 Msa0319830:intron 45.0%
!!! TCTTTTTTTGGTAGTGGCCG+GGG - chr2_4:19875259-19875278 None:intergenic 45.0%
CCAGAACCAAACAGATCTCA+AGG - chr2_4:19875365-19875384 None:intergenic 45.0%
! CCTTGAGATCTGTTTGGTTC+TGG + chr2_4:19875362-19875381 Msa0319830:intron 45.0%
!! TGTTTGGTTCTGGTGAATCG+CGG + chr2_4:19875372-19875391 Msa0319830:intron 45.0%
TCCCCTCAAATCCTCAAGTA+TGG + chr2_4:19875758-19875777 Msa0319830:intron 45.0%
GCCATACTTGAGGATTTGAG+GGG - chr2_4:19875762-19875781 None:intergenic 45.0%
TCAGCCATATGCCATACTTG+AGG - chr2_4:19875772-19875791 None:intergenic 45.0%
AGGTGTTTGTGCAAGACCAA+TGG - chr2_4:19876326-19876345 None:intergenic 45.0%
CAATTACCACCTTGAGGACA+AGG - chr2_4:19876346-19876365 None:intergenic 45.0%
GCACAATCCATTAAGAGGTG+TGG + chr2_4:19876548-19876567 Msa0319830:intron 45.0%
!! AGTGTTTAAATGGGCTACGC+CGG - chr2_4:19877136-19877155 None:intergenic 45.0%
GATGGGAAACAATCTACCAC+CGG + chr2_4:19877405-19877424 Msa0319830:CDS 45.0%
TCTATAACTTCGTTTGCCGG+TGG - chr2_4:19877424-19877443 None:intergenic 45.0%
!! AGGCTTTGAAGGTCGGAATT+AGG - chr2_4:19877550-19877569 None:intergenic 45.0%
!! CATTATCAGAGTTGGTGGCT+AGG - chr2_4:19877570-19877589 None:intergenic 45.0%
ACGTGCATTATCAGAGTTGG+TGG - chr2_4:19877575-19877594 None:intergenic 45.0%
GGTAATGAAGTGAGTCCAGT+TGG + chr2_4:19877658-19877677 Msa0319830:CDS 45.0%
AATGAAGTGAGTCCAGTTGG+AGG + chr2_4:19877661-19877680 Msa0319830:CDS 45.0%
CTGAAAGAACCCTTAGATGG+AGG - chr2_4:19877817-19877836 None:intergenic 45.0%
AAGGAAGAGATATATCGCGC+GGG - chr2_4:19877942-19877961 None:intergenic 45.0%
TTTCACTTCACCGGGTGTTA+TGG + chr2_4:19877969-19877988 Msa0319830:CDS 45.0%
ATGGTACAAGACGGTCCAAA+TGG + chr2_4:19877988-19878007 Msa0319830:CDS 45.0%
TGGTACAAGACGGTCCAAAT+GGG + chr2_4:19877989-19878008 Msa0319830:CDS 45.0%
ATGCAGCCCTAGATAACACT+GGG + chr2_4:19878049-19878068 Msa0319830:CDS 45.0%
ACCGATCCCAGTGTTATCTA+GGG - chr2_4:19878058-19878077 None:intergenic 45.0%
AACCGATCCCAGTGTTATCT+AGG - chr2_4:19878059-19878078 None:intergenic 45.0%
TAGATAACACTGGGATCGGT+TGG + chr2_4:19878058-19878077 Msa0319830:CDS 45.0%
AGATAACACTGGGATCGGTT+GGG + chr2_4:19878059-19878078 Msa0319830:CDS 45.0%
!! TTGGTAAAGGTACTCCACGA+AGG + chr2_4:19878181-19878200 Msa0319830:CDS 45.0%
!! GTACCCATTTGGATTTGGTG+GGG + chr2_4:19878308-19878327 Msa0319830:CDS 45.0%
CTTTCCCCACCAAATCCAAA+TGG - chr2_4:19878315-19878334 None:intergenic 45.0%
!! GGATTTGGTGGGGAAAGAAA+TGG + chr2_4:19878318-19878337 Msa0319830:CDS 45.0%
!!! TTTTTCTTTTATAATTAAAA+TGG - chr2_4:19877246-19877265 None:intergenic 5.0%
!!! TTTTTCTTTTATAATAAAAA+TGG - chr2_4:19877277-19877296 None:intergenic 5.0%
!!! AAAAAATAGTATTAATTTTT+TGG - chr2_4:19878585-19878604 None:intergenic 5.0%
!!! AAATTAATACTATTTTTTTT+TGG + chr2_4:19878587-19878606 Msa0319830:three_prime_UTR 5.0%
CTTTCTTTGCTCCAACCAGG+AGG + chr2_4:19874787-19874806 Msa0319830:CDS 50.0%
TAGAAGGAGAGGAGAAGCCA+AGG - chr2_4:19874817-19874836 None:intergenic 50.0%
GGCTTCTCCTCTCCTTCTAT+TGG + chr2_4:19874818-19874837 Msa0319830:CDS 50.0%
GATAGAGACCAAACCTGCTG+TGG - chr2_4:19874868-19874887 None:intergenic 50.0%
TTCTGGTGAATCGCGGAAAC+CGG + chr2_4:19875379-19875398 Msa0319830:intron 50.0%
GCACAAACACCTTGTCCTCA+AGG + chr2_4:19876334-19876353 Msa0319830:intron 50.0%
CAAACACCTTGTCCTCAAGG+TGG + chr2_4:19876337-19876356 Msa0319830:intron 50.0%
!! AGTTGGTGGCTAGGCTTTGA+AGG - chr2_4:19877561-19877580 None:intergenic 50.0%
CCGTCTTGTACCATAACACC+CGG - chr2_4:19877982-19878001 None:intergenic 50.0%
! CCGGGTGTTATGGTACAAGA+CGG + chr2_4:19877979-19877998 Msa0319830:CDS 50.0%
CATGCAGCCCTAGATAACAC+TGG + chr2_4:19878048-19878067 Msa0319830:CDS 50.0%
GCCCTAGATAACACTGGGAT+CGG + chr2_4:19878054-19878073 Msa0319830:CDS 50.0%
TCCAACCAGGAGGTTCTCCT+TGG + chr2_4:19874797-19874816 Msa0319830:CDS 55.0%
AGAAGCCAAGGAGAACCTCC+TGG - chr2_4:19874805-19874824 None:intergenic 55.0%
CCAAACCTGCTGTGGGAATG+AGG - chr2_4:19874860-19874879 None:intergenic 55.0%
CCTCATTCCCACAGCAGGTT+TGG + chr2_4:19874857-19874876 Msa0319830:intron 55.0%
AAGGTCCGGGGTTTAAACCC+CGG + chr2_4:19875239-19875258 Msa0319830:intron 55.0%
!! GGTGGCTAGGCTTTGAAGGT+CGG - chr2_4:19877557-19877576 None:intergenic 55.0%
GTCCAGTTGGAGGTTCTTCC+TGG + chr2_4:19877671-19877690 Msa0319830:CDS 55.0%
AGCCAGGAAGAACCTCCAAC+TGG - chr2_4:19877676-19877695 None:intergenic 55.0%
! TATCGCGCGGGTTACCAACA+TGG - chr2_4:19877930-19877949 None:intergenic 55.0%
! AAGGTACTCCACGAAGGCCT+TGG + chr2_4:19878187-19878206 Msa0319830:CDS 55.0%
AGGTACTCCACGAAGGCCTT+GGG + chr2_4:19878188-19878207 Msa0319830:CDS 55.0%
GCCAAGGAGAACCTCCTGGT+TGG - chr2_4:19874801-19874820 None:intergenic 60.0%
AGTGGCCGGGGTTTAAACCC+CGG - chr2_4:19875247-19875266 None:intergenic 60.0%
! GAGAGTGGTTGGCCCTCTGA+TGG + chr2_4:19878099-19878118 Msa0319830:CDS 60.0%
! AGTGGTTGGCCCTCTGATGG+AGG + chr2_4:19878102-19878121 Msa0319830:CDS 60.0%
TTGGCCCTCTGATGGAGGAG+CGG + chr2_4:19878107-19878126 Msa0319830:CDS 60.0%
GTAGCCGCTCCTCCATCAGA+GGG - chr2_4:19878114-19878133 None:intergenic 60.0%
AGTAGCCGCTCCTCCATCAG+AGG - chr2_4:19878115-19878134 None:intergenic 60.0%
TCTGTTGCCCAAGGCCTTCG+TGG - chr2_4:19878198-19878217 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 19874741 19878618 19874741 ID=Msa0319830;Name=Msa0319830
chr2_4 mRNA 19874741 19878618 19874741 ID=Msa0319830-mRNA-1;Parent=Msa0319830;Name=Msa0319830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=39|1|1|1|1|1|2|223|370
chr2_4 exon 19874741 19874873 19874741 ID=Msa0319830-mRNA-1:exon:7313;Parent=Msa0319830-mRNA-1
chr2_4 exon 19877377 19878618 19877377 ID=Msa0319830-mRNA-1:exon:7314;Parent=Msa0319830-mRNA-1
chr2_4 five_prime_UTR 19874741 19874779 19874741 ID=Msa0319830-mRNA-1:five_prime_utr;Parent=Msa0319830-mRNA-1
chr2_4 CDS 19874780 19874873 19874780 ID=Msa0319830-mRNA-1:cds;Parent=Msa0319830-mRNA-1
chr2_4 CDS 19877377 19878395 19877377 ID=Msa0319830-mRNA-1:cds;Parent=Msa0319830-mRNA-1
chr2_4 three_prime_UTR 19878396 19878618 19878396 ID=Msa0319830-mRNA-1:three_prime_utr;Parent=Msa0319830-mRNA-1
Gene Sequence

>Msa0319830

ATGCCTTCTTTCTTTGCTCCAACCAGGAGGTTCTCCTTGGCTTCTCCTCTCCTTCTATTGGGATTGTTCACAATAAACCTCATTCCCACAGCAGATGCTCAAATAGGAGTATGTTATGGTATGATGGGAAACAATCTACCACCGGCAAACGAAGTTATAGATCTCTACAAAGCAAACAATATCAAGAGAATGAGACTCTATGATCCTAATCAAGCTGCTCTAAATGCATTAAGAAATTCAGGCATTGAACTCATTCTTGGTGTGCCTAATTCCGACCTTCAAAGCCTAGCCACCAACTCTGATAATGCACGTCAATGGGTACAAAGAAATGTATTGAATTTCTGGCCTAGTGTCAAAATCAAGTATATTGCAGTTGGTAATGAAGTGAGTCCAGTTGGAGGTTCTTCCTGGCTAGCACAATATGTTTTACCTGCCACCCAAAATATATATCAAGCGATAAGAGCGAAAAATCTTCATGATCAAATCAAGGTTTCAACCGCTATTGACATGACCCTTATTGGAAACTCATTCCCTCCATCTAAGGGTTCTTTCAGAAATGATGTTAGGGCATACCTAGATCCTTTCATTGGATACTTGGTATATGCAGGTGCACCTTTACTTGTCAATGTTTACCCTTATTTTAGCCATGTTGGTAACCCGCGCGATATATCTCTTCCTTATGCTCTTTTCACTTCACCGGGTGTTATGGTACAAGACGGTCCAAATGGGTACCAAAACTTATTTGATGCTATGTTGGATTCGGTGCATGCAGCCCTAGATAACACTGGGATCGGTTGGGTGAATGTTGTTGTATCTGAGAGTGGTTGGCCCTCTGATGGAGGAGCGGCTACTTCATATGACAACGCACGTATTTACCTTGATAATTTGATTCGTCATGTTGGTAAAGGTACTCCACGAAGGCCTTGGGCAACAGAAACTTATATTTTTGCTATGTTTGATGAGAACCAAAAGAGTCCAGAATTGGAGAAACATTTTGGAGTGTTTTATCCTAATAAACAAAAGAAGTACCCATTTGGATTTGGTGGGGAAAGAAATGGGGAAATTGTCAATGGTGACTTCAATGCAACTATTTCTCTTAAGAGTGACATGTAA
Protein sequence

>Msa0319830

MPSFFAPTRRFSLASPLLLLGLFTINLIPTADAQIGVCYGMMGNNLPPANEVIDLYKANNIKRMRLYDPNQAALNALRNSGIELILGVPNSDLQSLATNSDNARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNIYQAIRAKNLHDQIKVSTAIDMTLIGNSFPPSKGSFRNDVRAYLDPFIGYLVYAGAPLLVNVYPYFSHVGNPRDISLPYALFTSPGVMVQDGPNGYQNLFDAMLDSVHAALDNTGIGWVNVVVSESGWPSDGGAATSYDNARIYLDNLIRHVGKGTPRRPWATETYIFAMFDENQKSPELEKHFGVFYPNKQKKYPFGFGGERNGEIVNGDFNATISLKSDM*