Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100200 | sp|P93338|GAPN_NICPL | 89.315 | 496 | 53 | 0 | 1 | 496 | 1 | 496 | 0.0 | 932 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100200 | G7I8A4 | 98.387 | 496 | 8 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004940 | Msa0100200 | 0.820937 | 5.267175e-53 | -8.615850e-47 |
| Msa0004990 | Msa0100200 | 0.819154 | 1.348303e-52 | -8.615850e-47 |
| Msa0021400 | Msa0100200 | 0.837228 | 5.882100e-57 | -8.615850e-47 |
| Msa0029700 | Msa0100200 | 0.800856 | 1.184598e-48 | -8.615850e-47 |
| Msa0031650 | Msa0100200 | 0.801329 | 9.479027e-49 | -8.615850e-47 |
| Msa0036550 | Msa0100200 | 0.809280 | 2.046201e-50 | -8.615850e-47 |
| Msa0038010 | Msa0100200 | 0.819119 | 1.372675e-52 | -8.615850e-47 |
| Msa0046430 | Msa0100200 | 0.804184 | 2.439800e-49 | -8.615850e-47 |
| Msa0051910 | Msa0100200 | 0.803220 | 3.867971e-49 | -8.615850e-47 |
| Msa0053040 | Msa0100200 | 0.818816 | 1.609034e-52 | -8.615850e-47 |
| Msa0054860 | Msa0100200 | 0.955039 | 7.563723e-113 | -8.615850e-47 |
| Msa0064960 | Msa0100200 | 0.806187 | 9.293075e-50 | -8.615850e-47 |
| Msa0072440 | Msa0100200 | 0.806790 | 6.931445e-50 | -8.615850e-47 |
| Msa0078160 | Msa0100200 | -0.809906 | 1.500926e-50 | -8.615850e-47 |
| Msa0078170 | Msa0100200 | -0.803118 | 4.060898e-49 | -8.615850e-47 |
| Msa0080010 | Msa0100200 | 0.813109 | 3.022673e-51 | -8.615850e-47 |
| Msa0080020 | Msa0100200 | 0.801608 | 8.307905e-49 | -8.615850e-47 |
| Msa0085710 | Msa0100200 | 0.819005 | 1.457408e-52 | -8.615850e-47 |
| Msa0090190 | Msa0100200 | 0.804350 | 2.252989e-49 | -8.615850e-47 |
| Msa0098380 | Msa0100200 | 0.803114 | 4.068080e-49 | -8.615850e-47 |
| Msa0100200 | Msa0107830 | 0.819255 | 1.278155e-52 | -8.615850e-47 |
| Msa0100200 | Msa0110240 | 0.810434 | 1.154718e-50 | -8.615850e-47 |
| Msa0100200 | Msa0120860 | 0.809639 | 1.713285e-50 | -8.615850e-47 |
| Msa0100200 | Msa0129270 | 0.802877 | 4.554458e-49 | -8.615850e-47 |
| Msa0100200 | Msa0130360 | 0.836349 | 9.857923e-57 | -8.615850e-47 |
| Msa0100200 | Msa0137760 | 0.821969 | 3.043157e-53 | -8.615850e-47 |
| Msa0100200 | Msa0154750 | 0.813294 | 2.753425e-51 | -8.615850e-47 |
| Msa0100200 | Msa0171740 | 0.808055 | 3.736632e-50 | -8.615850e-47 |
| Msa0100200 | Msa0175060 | 0.825825 | 3.794062e-54 | -8.615850e-47 |
| Msa0100200 | Msa0176600 | 0.800635 | 1.313824e-48 | -8.615850e-47 |
| Msa0100200 | Msa0182840 | 0.800863 | 1.180355e-48 | -8.615850e-47 |
| Msa0100200 | Msa0186200 | 0.817368 | 3.419887e-52 | -8.615850e-47 |
| Msa0100200 | Msa0200090 | 0.806066 | 9.854317e-50 | -8.615850e-47 |
| Msa0100200 | Msa0227790 | 0.817359 | 3.434667e-52 | -8.615850e-47 |
| Msa0100200 | Msa0240580 | 0.801443 | 8.984095e-49 | -8.615850e-47 |
| Msa0100200 | Msa0242720 | 0.802972 | 4.353829e-49 | -8.615850e-47 |
| Msa0100200 | Msa0244310 | 0.805596 | 1.236719e-49 | -8.615850e-47 |
| Msa0100200 | Msa0261020 | -0.824517 | 7.733485e-54 | -8.615850e-47 |
| Msa0100200 | Msa0264220 | 0.800917 | 1.150695e-48 | -8.615850e-47 |
| Msa0100200 | Msa0276780 | 0.830169 | 3.416436e-55 | -8.615850e-47 |
| Msa0100200 | Msa0308740 | 0.830516 | 2.810567e-55 | -8.615850e-47 |
| Msa0100200 | Msa0320170 | 0.808213 | 3.458846e-50 | -8.615850e-47 |
| Msa0100200 | Msa0336640 | 0.838133 | 3.446724e-57 | -8.615850e-47 |
| Msa0100200 | Msa0343520 | 0.801579 | 8.424887e-49 | -8.615850e-47 |
| Msa0100200 | Msa0346170 | 0.817106 | 3.915977e-52 | -8.615850e-47 |
| Msa0100200 | Msa0350180 | 0.834684 | 2.599809e-56 | -8.615850e-47 |
| Msa0100200 | Msa0357470 | 0.823299 | 1.492292e-53 | -8.615850e-47 |
| Msa0100200 | Msa0357510 | 0.821371 | 4.183145e-53 | -8.615850e-47 |
| Msa0100200 | Msa0357530 | 0.818849 | 1.581253e-52 | -8.615850e-47 |
| Msa0100200 | Msa0372100 | 0.802334 | 5.894637e-49 | -8.615850e-47 |
| Msa0100200 | Msa0375550 | 0.832506 | 9.091425e-56 | -8.615850e-47 |
| Msa0100200 | Msa0390200 | 0.811519 | 6.723623e-51 | -8.615850e-47 |
| Msa0100200 | Msa0405200 | 0.814950 | 1.186332e-51 | -8.615850e-47 |
| Msa0100200 | Msa0417060 | 0.800852 | 1.186706e-48 | -8.615850e-47 |
| Msa0100200 | Msa0423630 | 0.801158 | 1.027564e-48 | -8.615850e-47 |
| Msa0100200 | Msa0433090 | 0.851698 | 7.489494e-61 | -8.615850e-47 |
| Msa0100200 | Msa0434140 | 0.807303 | 5.398629e-50 | -8.615850e-47 |
| Msa0100200 | Msa0449500 | 0.814690 | 1.354830e-51 | -8.615850e-47 |
| Msa0100200 | Msa0459930 | 0.814314 | 1.640774e-51 | -8.615850e-47 |
| Msa0100200 | Msa0465420 | 0.806786 | 6.944143e-50 | -8.615850e-47 |
| Msa0100200 | Msa0474290 | -0.802246 | 6.146080e-49 | -8.615850e-47 |
| Msa0100200 | Msa0478400 | 0.802899 | 4.506931e-49 | -8.615850e-47 |
| Msa0100200 | Msa0497680 | 0.830612 | 2.662035e-55 | -8.615850e-47 |
| Msa0100200 | Msa0511280 | 0.802629 | 5.122826e-49 | -8.615850e-47 |
| Msa0100200 | Msa0511380 | 0.823902 | 1.078332e-53 | -8.615850e-47 |
| Msa0100200 | Msa0517200 | 0.801859 | 7.379508e-49 | -8.615850e-47 |
| Msa0100200 | Msa0518720 | -0.804851 | 1.771249e-49 | -8.615850e-47 |
| Msa0100200 | Msa0524710 | 0.846276 | 2.404599e-59 | -8.615850e-47 |
| Msa0100200 | Msa0561830 | 0.821279 | 4.392515e-53 | -8.615850e-47 |
| Msa0100200 | Msa0568920 | 0.803195 | 3.914163e-49 | -8.615850e-47 |
| Msa0100200 | Msa0572700 | 0.809447 | 1.884191e-50 | -8.615850e-47 |
| Msa0100200 | Msa0575950 | 0.843040 | 1.789542e-58 | -8.615850e-47 |
| Msa0100200 | Msa0579520 | 0.841834 | 3.735942e-58 | -8.615850e-47 |
| Msa0100200 | Msa0587730 | 0.811980 | 5.336952e-51 | -8.615850e-47 |
| Msa0100200 | Msa0587930 | 0.804652 | 1.949075e-49 | -8.615850e-47 |
| Msa0100200 | Msa0597800 | 0.849640 | 2.840585e-60 | -8.615850e-47 |
| Msa0100200 | Msa0597820 | 0.854909 | 8.992018e-62 | -8.615850e-47 |
| Msa0100200 | Msa0614960 | 0.809053 | 2.288304e-50 | -8.615850e-47 |
| Msa0100200 | Msa0619450 | -0.806860 | 6.699494e-50 | -8.615850e-47 |
| Msa0100200 | Msa0619530 | -0.802979 | 4.338555e-49 | -8.615850e-47 |
| Msa0100200 | Msa0622890 | 0.813965 | 1.959339e-51 | -8.615850e-47 |
| Msa0100200 | Msa0637590 | 0.809460 | 1.871330e-50 | -8.615850e-47 |
| Msa0100200 | Msa0637700 | 0.824410 | 8.194112e-54 | -8.615850e-47 |
| Msa0100200 | Msa0644340 | 0.821171 | 4.653810e-53 | -8.615850e-47 |
| Msa0100200 | Msa0650550 | 0.840157 | 1.029714e-57 | -8.615850e-47 |
| Msa0100200 | Msa0655370 | 0.827552 | 1.468680e-54 | -8.615850e-47 |
| Msa0100200 | Msa0659580 | -0.805764 | 1.140417e-49 | -8.615850e-47 |
| Msa0100200 | Msa0679220 | 0.809019 | 2.327322e-50 | -8.615850e-47 |
| Msa0100200 | Msa0680460 | 0.801532 | 8.614546e-49 | -8.615850e-47 |
| Msa0100200 | Msa0689840 | 0.806911 | 6.535352e-50 | -8.615850e-47 |
| Msa0100200 | Msa0699170 | 0.815715 | 8.018846e-52 | -8.615850e-47 |
| Msa0100200 | Msa0711240 | 0.819413 | 1.176737e-52 | -8.615850e-47 |
| Msa0100200 | Msa0716980 | 0.812861 | 3.426282e-51 | -8.615850e-47 |
| Msa0100200 | Msa0727230 | 0.801880 | 7.307242e-49 | -8.615850e-47 |
| Msa0100200 | Msa0734700 | 0.802717 | 4.914233e-49 | -8.615850e-47 |
| Msa0100200 | Msa0735340 | 0.850297 | 1.859958e-60 | -8.615850e-47 |
| Msa0100200 | Msa0743370 | 0.830347 | 3.090394e-55 | -8.615850e-47 |
| Msa0100200 | Msa0744710 | 0.814716 | 1.337003e-51 | -8.615850e-47 |
| Msa0100200 | Msa0747710 | 0.823429 | 1.392090e-53 | -8.615850e-47 |
| Msa0100200 | Msa0750790 | 0.824807 | 6.608633e-54 | -8.615850e-47 |
| Msa0100200 | Msa0750830 | 0.839798 | 1.277497e-57 | -8.615850e-47 |
| Msa0100200 | Msa0751510 | 0.800108 | 1.682047e-48 | -8.615850e-47 |
| Msa0100200 | Msa0753410 | 0.802162 | 6.395313e-49 | -8.615850e-47 |
| Msa0100200 | Msa0756570 | 0.807562 | 4.758534e-50 | -8.615850e-47 |
| Msa0100200 | Msa0772350 | 0.811000 | 8.713673e-51 | -8.615850e-47 |
| Msa0100200 | Msa0777210 | 0.854983 | 8.555339e-62 | -8.615850e-47 |
| Msa0100200 | Msa0777600 | 0.806218 | 9.151440e-50 | -8.615850e-47 |
| Msa0100200 | Msa0794200 | 0.818926 | 1.519182e-52 | -8.615850e-47 |
| Msa0100200 | Msa0797950 | 0.807106 | 5.942980e-50 | -8.615850e-47 |
| Msa0100200 | Msa0799110 | 0.809076 | 2.262913e-50 | -8.615850e-47 |
| Msa0100200 | Msa0799120 | 0.818875 | 1.560377e-52 | -8.615850e-47 |
| Msa0100200 | Msa0801860 | 0.804479 | 2.118019e-49 | -8.615850e-47 |
| Msa0100200 | Msa0813610 | 0.811381 | 7.202757e-51 | -8.615850e-47 |
| Msa0100200 | Msa0814350 | 0.854573 | 1.125085e-61 | -8.615850e-47 |
| Msa0100200 | Msa0814660 | 0.823182 | 1.589462e-53 | -8.615850e-47 |
| Msa0100200 | Msa0826240 | 0.814118 | 1.813146e-51 | -8.615850e-47 |
| Msa0100200 | Msa0829990 | 0.801848 | 7.419190e-49 | -8.615850e-47 |
| Msa0100200 | Msa0840540 | 0.800187 | 1.621171e-48 | -8.615850e-47 |
| Msa0100200 | Msa0847140 | 0.809850 | 1.543240e-50 | -8.615850e-47 |
| Msa0100200 | Msa0854230 | 0.808648 | 2.793332e-50 | -8.615850e-47 |
| Msa0100200 | Msa0854860 | 0.806388 | 8.429589e-50 | -8.615850e-47 |
| Msa0100200 | Msa0855260 | 0.806267 | 8.936984e-50 | -8.615850e-47 |
| Msa0100200 | Msa0871420 | 0.804262 | 2.350136e-49 | -8.615850e-47 |
| Msa0100200 | Msa0874750 | 0.828239 | 1.004221e-54 | -8.615850e-47 |
| Msa0100200 | Msa0886370 | 0.820916 | 5.325347e-53 | -8.615850e-47 |
| Msa0100200 | Msa0904590 | 0.816057 | 6.729536e-52 | -8.615850e-47 |
| Msa0100200 | Msa0910560 | 0.816773 | 4.653181e-52 | -8.615850e-47 |
| Msa0100200 | Msa0910590 | 0.848651 | 5.350160e-60 | -8.615850e-47 |
| Msa0100200 | Msa0913500 | 0.829761 | 4.295338e-55 | -8.615850e-47 |
| Msa0100200 | Msa0921860 | 0.818436 | 1.962173e-52 | -8.615850e-47 |
| Msa0100200 | Msa0936630 | 0.823198 | 1.576282e-53 | -8.615850e-47 |
| Msa0100200 | Msa0937160 | -0.805317 | 1.414939e-49 | -8.615850e-47 |
| Msa0100200 | Msa0947420 | 0.807700 | 4.446502e-50 | -8.615850e-47 |
| Msa0100200 | Msa0948430 | 0.846302 | 2.365438e-59 | -8.615850e-47 |
| Msa0100200 | Msa0973850 | 0.818452 | 1.946372e-52 | -8.615850e-47 |
| Msa0100200 | Msa0974410 | -0.815367 | 9.585450e-52 | -8.615850e-47 |
| Msa0100200 | Msa0976400 | 0.809039 | 2.304010e-50 | -8.615850e-47 |
| Msa0100200 | Msa0978530 | 0.801769 | 7.701068e-49 | -8.615850e-47 |
| Msa0100200 | Msa0985380 | 0.821131 | 4.752874e-53 | -8.615850e-47 |
| Msa0100200 | Msa0985980 | -0.802798 | 4.729155e-49 | -8.615850e-47 |
| Msa0100200 | Msa0987020 | 0.805757 | 1.144032e-49 | -8.615850e-47 |
| Msa0100200 | Msa0987550 | 0.823511 | 1.331796e-53 | -8.615850e-47 |
| Msa0100200 | Msa1003730 | 0.817901 | 2.592452e-52 | -8.615850e-47 |
| Msa0100200 | Msa1026970 | 0.824398 | 8.246284e-54 | -8.615850e-47 |
| Msa0100200 | Msa1031060 | 0.805926 | 1.054413e-49 | -8.615850e-47 |
| Msa0100200 | Msa1035050 | 0.805070 | 1.594427e-49 | -8.615850e-47 |
| Msa0100200 | Msa1036590 | 0.838494 | 2.781630e-57 | -8.615850e-47 |
| Msa0100200 | Msa1037360 | 0.807772 | 4.292785e-50 | -8.615850e-47 |
| Msa0100200 | Msa1040330 | 0.811922 | 5.494996e-51 | -8.615850e-47 |
| Msa0100200 | Msa1075090 | 0.807370 | 5.226229e-50 | -8.615850e-47 |
| Msa0100200 | Msa1076900 | 0.840628 | 7.756535e-58 | -8.615850e-47 |
| Msa0100200 | Msa1085560 | 0.844250 | 8.490519e-59 | -8.615850e-47 |
| Msa0100200 | Msa1085820 | 0.861231 | 1.185960e-63 | -8.615850e-47 |
| Msa0100200 | Msa1107220 | 0.830411 | 2.981647e-55 | -8.615850e-47 |
| Msa0100200 | Msa1107250 | 0.810760 | 9.819384e-51 | -8.615850e-47 |
| Msa0100200 | Msa1111900 | 0.810873 | 9.284567e-51 | -8.615850e-47 |
| Msa0100200 | Msa1119670 | 0.806326 | 8.683647e-50 | -8.615850e-47 |
| Msa0100200 | Msa1123000 | 0.802239 | 6.165523e-49 | -8.615850e-47 |
| Msa0100200 | Msa1124220 | 0.806101 | 9.685748e-50 | -8.615850e-47 |
| Msa0100200 | Msa1150760 | 0.821707 | 3.498775e-53 | -8.615850e-47 |
| Msa0100200 | Msa1154310 | 0.831535 | 1.580164e-55 | -8.615850e-47 |
| Msa0100200 | Msa1163710 | 0.810645 | 1.039841e-50 | -8.615850e-47 |
| Msa0100200 | Msa1191270 | 0.838300 | 3.121800e-57 | -8.615850e-47 |
| Msa0100200 | Msa1202110 | 0.806898 | 6.578045e-50 | -8.615850e-47 |
| Msa0100200 | Msa1208140 | 0.801155 | 1.028795e-48 | -8.615850e-47 |
| Msa0100200 | Msa1211160 | 0.811645 | 6.312752e-51 | -8.615850e-47 |
| Msa0100200 | Msa1211320 | 0.844231 | 8.591523e-59 | -8.615850e-47 |
| Msa0100200 | Msa1223710 | 0.826425 | 2.732324e-54 | -8.615850e-47 |
| Msa0100200 | Msa1225280 | -0.802606 | 5.180165e-49 | -8.615850e-47 |
| Msa0100200 | Msa1254870 | 0.808194 | 3.491340e-50 | -8.615850e-47 |
| Msa0100200 | Msa1259570 | 0.832040 | 1.185600e-55 | -8.615850e-47 |
| Msa0100200 | Msa1263370 | 0.834974 | 2.197290e-56 | -8.615850e-47 |
| Msa0100200 | Msa1296490 | 0.810224 | 1.281780e-50 | -8.615850e-47 |
| Msa0100200 | Msa1299310 | 0.813788 | 2.143241e-51 | -8.615850e-47 |
| Msa0100200 | Msa1300570 | 0.801135 | 1.038779e-48 | -8.615850e-47 |
| Msa0100200 | Msa1302630 | 0.808295 | 3.322131e-50 | -8.615850e-47 |
| Msa0100200 | Msa1320160 | 0.803811 | 2.916464e-49 | -8.615850e-47 |
| Msa0100200 | Msa1328430 | 0.807720 | 4.403234e-50 | -8.615850e-47 |
| Msa0100200 | Msa1329770 | 0.804380 | 2.220951e-49 | -8.615850e-47 |
| Msa0100200 | Msa1335500 | 0.806240 | 9.054620e-50 | -8.615850e-47 |
| Msa0100200 | Msa1349420 | 0.835416 | 1.700079e-56 | -8.615850e-47 |
| Msa0100200 | Msa1357840 | 0.801906 | 7.218582e-49 | -8.615850e-47 |
| Msa0100200 | Msa1359520 | 0.993382 | 2.389702e-199 | -8.615850e-47 |
| Msa0100200 | Msa1362520 | 0.835207 | 1.919699e-56 | -8.615850e-47 |
| Msa0100200 | Msa1364690 | 0.828144 | 1.058713e-54 | -8.615850e-47 |
| Msa0100200 | Msa1375640 | 0.815774 | 7.781656e-52 | -8.615850e-47 |
| Msa0100200 | Msa1376520 | 0.823242 | 1.539430e-53 | -8.615850e-47 |
| Msa0100200 | Msa1377190 | 0.846332 | 2.321073e-59 | -8.615850e-47 |
| Msa0100200 | Msa1377460 | 0.831604 | 1.519159e-55 | -8.615850e-47 |
| Msa0100200 | Msa1393730 | 0.800629 | 1.317828e-48 | -8.615850e-47 |
| Msa0100200 | Msa1395720 | 0.807505 | 4.891527e-50 | -8.615850e-47 |
| Msa0100200 | Msa1407040 | 0.803956 | 2.721083e-49 | -8.615850e-47 |
| Msa0100200 | Msa1408320 | 0.801018 | 1.097369e-48 | -8.615850e-47 |
| Msa0100200 | Msa1417220 | 0.818366 | 2.034833e-52 | -8.615850e-47 |
| Msa0100200 | Msa1429190 | 0.814092 | 1.837449e-51 | -8.615850e-47 |
| Msa0100200 | Msa1434700 | 0.842514 | 2.468216e-58 | -8.615850e-47 |
| Msa0100200 | Msa1437590 | 0.845819 | 3.201086e-59 | -8.615850e-47 |
| Msa0100200 | Msa1453890 | 0.808466 | 3.055459e-50 | -8.615850e-47 |
| Msa0100200 | Msa1463640 | 0.818418 | 1.980545e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100200 | MtrunA17_Chr1g0149961 | 98.387 | 496 | 8 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1008 |
| Msa0100200 | MtrunA17_Chr4g0074171 | 90.121 | 496 | 49 | 0 | 1 | 496 | 1 | 496 | 0.0 | 940 |
| Msa0100200 | MtrunA17_Chr2g0310091 | 32.272 | 471 | 298 | 7 | 22 | 482 | 68 | 527 | 1.31e-71 | 237 |
| Msa0100200 | MtrunA17_Chr8g0365221 | 31.762 | 488 | 305 | 10 | 21 | 493 | 66 | 540 | 1.09e-60 | 208 |
| Msa0100200 | MtrunA17_Chr3g0118081 | 33.761 | 468 | 285 | 9 | 19 | 469 | 41 | 500 | 2.09e-60 | 207 |
| Msa0100200 | MtrunA17_Chr3g0118121 | 33.830 | 470 | 282 | 11 | 19 | 469 | 11 | 470 | 3.09e-59 | 203 |
| Msa0100200 | MtrunA17_Chr8g0390631 | 29.218 | 486 | 320 | 10 | 19 | 493 | 17 | 489 | 1.97e-57 | 198 |
| Msa0100200 | MtrunA17_Chr4g0059221 | 29.817 | 493 | 308 | 10 | 21 | 493 | 69 | 543 | 8.83e-55 | 192 |
| Msa0100200 | MtrunA17_Chr8g0390651 | 28.049 | 492 | 320 | 9 | 19 | 494 | 26 | 499 | 1.82e-54 | 190 |
| Msa0100200 | MtrunA17_Chr3g0117861 | 29.918 | 488 | 314 | 11 | 21 | 493 | 67 | 541 | 2.42e-53 | 188 |
| Msa0100200 | MtrunA17_Chr4g0059521 | 31.381 | 478 | 303 | 10 | 19 | 477 | 11 | 482 | 3.44e-53 | 187 |
| Msa0100200 | MtrunA17_Chr6g0485301 | 28.889 | 495 | 312 | 11 | 19 | 494 | 25 | 498 | 1.04e-52 | 186 |
| Msa0100200 | MtrunA17_Chr6g0485311 | 28.827 | 503 | 325 | 11 | 11 | 493 | 6 | 495 | 1.90e-52 | 185 |
| Msa0100200 | MtrunA17_Chr2g0279751 | 29.522 | 481 | 313 | 11 | 22 | 487 | 21 | 490 | 3.51e-47 | 171 |
| Msa0100200 | MtrunA17_Chr2g0294411 | 28.601 | 486 | 319 | 12 | 19 | 485 | 52 | 528 | 6.82e-46 | 169 |
| Msa0100200 | MtrunA17_Chr4g0049641 | 28.211 | 475 | 319 | 9 | 22 | 483 | 48 | 513 | 3.32e-44 | 163 |
| Msa0100200 | MtrunA17_Chr2g0300801 | 24.431 | 483 | 339 | 14 | 19 | 487 | 25 | 495 | 8.54e-30 | 122 |
| Msa0100200 | MtrunA17_Chr2g0328781 | 28.615 | 325 | 208 | 10 | 158 | 467 | 120 | 435 | 1.86e-24 | 106 |
| Msa0100200 | MtrunA17_Chr3g0124811 | 24.891 | 458 | 317 | 12 | 39 | 485 | 7 | 448 | 1.87e-23 | 103 |
| Msa0100200 | MtrunA17_Chr8g0384741 | 25.408 | 429 | 285 | 13 | 53 | 467 | 74 | 481 | 5.45e-23 | 102 |
| Msa0100200 | MtrunA17_Chr8g0372381 | 28.797 | 316 | 216 | 6 | 158 | 467 | 109 | 421 | 1.37e-21 | 97.8 |
| Msa0100200 | MtrunA17_Chr1g0159811 | 25.505 | 396 | 276 | 10 | 75 | 461 | 37 | 422 | 2.73e-19 | 90.5 |
| Msa0100200 | MtrunA17_Chr4g0032441 | 25.581 | 301 | 209 | 7 | 158 | 448 | 105 | 400 | 1.51e-12 | 69.7 |
| Msa0100200 | MtrunA17_Chr4g0060261 | 25.836 | 329 | 209 | 13 | 22 | 329 | 57 | 371 | 1.21e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0100200 | AT2G24270.2 | 86.492 | 496 | 67 | 0 | 1 | 496 | 41 | 536 | 0.0 | 912 |
| Msa0100200 | AT2G24270.3 | 86.492 | 496 | 67 | 0 | 1 | 496 | 1 | 496 | 0.0 | 912 |
| Msa0100200 | AT2G24270.1 | 86.492 | 496 | 67 | 0 | 1 | 496 | 1 | 496 | 0.0 | 912 |
| Msa0100200 | AT2G24270.4 | 86.492 | 496 | 67 | 0 | 1 | 496 | 1 | 496 | 0.0 | 911 |
| Msa0100200 | AT1G74920.1 | 35.135 | 481 | 281 | 12 | 19 | 477 | 11 | 482 | 4.31e-69 | 229 |
| Msa0100200 | AT1G74920.2 | 34.927 | 481 | 277 | 13 | 19 | 477 | 11 | 477 | 1.27e-66 | 223 |
| Msa0100200 | AT1G79440.1 | 31.983 | 469 | 302 | 6 | 22 | 482 | 59 | 518 | 4.82e-66 | 222 |
| Msa0100200 | AT3G48170.1 | 31.667 | 480 | 299 | 11 | 19 | 477 | 11 | 482 | 2.37e-62 | 212 |
| Msa0100200 | AT3G48000.1 | 30.470 | 489 | 310 | 10 | 21 | 493 | 63 | 537 | 1.27e-58 | 202 |
| Msa0100200 | AT1G23800.1 | 30.435 | 483 | 316 | 9 | 22 | 493 | 60 | 533 | 3.34e-57 | 199 |
| Msa0100200 | AT3G24503.1 | 28.482 | 481 | 325 | 8 | 19 | 488 | 23 | 495 | 2.78e-53 | 187 |
| Msa0100200 | AT3G66658.1 | 28.016 | 489 | 311 | 13 | 11 | 467 | 31 | 510 | 4.61e-44 | 163 |
| Msa0100200 | AT2G14170.2 | 28.931 | 477 | 313 | 11 | 22 | 483 | 11 | 476 | 4.87e-44 | 162 |
| Msa0100200 | AT3G66658.2 | 28.016 | 489 | 311 | 13 | 11 | 467 | 31 | 510 | 1.00e-43 | 163 |
| Msa0100200 | AT2G14170.3 | 29.114 | 474 | 312 | 10 | 22 | 482 | 120 | 582 | 4.01e-43 | 161 |
| Msa0100200 | AT2G14170.1 | 28.931 | 477 | 313 | 11 | 22 | 483 | 120 | 585 | 4.26e-43 | 161 |
| Msa0100200 | AT1G23800.2 | 31.013 | 316 | 203 | 6 | 22 | 330 | 60 | 367 | 4.98e-34 | 133 |
| Msa0100200 | AT1G54100.2 | 24.224 | 483 | 340 | 12 | 19 | 487 | 24 | 494 | 1.86e-32 | 130 |
| Msa0100200 | AT1G54100.1 | 24.224 | 483 | 340 | 12 | 19 | 487 | 24 | 494 | 1.86e-32 | 130 |
| Msa0100200 | AT1G44170.3 | 27.044 | 318 | 221 | 8 | 158 | 468 | 49 | 362 | 2.29e-22 | 99.8 |
| Msa0100200 | AT1G44170.1 | 27.044 | 318 | 221 | 8 | 158 | 468 | 112 | 425 | 2.97e-22 | 100 |
| Msa0100200 | AT1G44170.2 | 27.044 | 318 | 221 | 8 | 158 | 468 | 112 | 425 | 2.97e-22 | 100 |
| Msa0100200 | AT4G34240.4 | 23.973 | 438 | 296 | 11 | 46 | 468 | 58 | 473 | 9.69e-20 | 92.8 |
| Msa0100200 | AT4G34240.1 | 23.973 | 438 | 296 | 11 | 46 | 468 | 73 | 488 | 1.27e-19 | 92.4 |
| Msa0100200 | AT4G34240.3 | 26.183 | 317 | 225 | 6 | 158 | 468 | 33 | 346 | 9.27e-19 | 89.0 |
| Msa0100200 | AT4G36250.1 | 26.935 | 323 | 216 | 10 | 158 | 467 | 108 | 423 | 8.60e-18 | 86.3 |
| Msa0100200 | AT5G62530.1 | 24.425 | 348 | 231 | 15 | 19 | 351 | 56 | 386 | 1.33e-12 | 70.5 |
| Msa0100200 | AT4G34240.2 | 26.415 | 265 | 166 | 9 | 71 | 322 | 92 | 340 | 7.74e-12 | 67.4 |
Find 133 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTAATGCAAGCAATTT+TGG | 0.134284 | 1_3:-6736410 | Msa0100200:CDS |
| ATACCTGGGTTGGTGGTTTA+AGG | 0.181685 | 1_3:+6737990 | None:intergenic |
| TTCCTTCCCTTCTGTATTCT+TGG | 0.223634 | 1_3:+6736552 | None:intergenic |
| TCTCGGAGAAGGAAAGTTTC+TGG | 0.263915 | 1_3:-6738251 | Msa0100200:CDS |
| TTTGAAACAGCTAGATTAAC+AGG | 0.291774 | 1_3:+6738049 | None:intergenic |
| ACGGAATTTATTCTGATAAC+AGG | 0.316059 | 1_3:+6736449 | None:intergenic |
| GGTTGTTAGATCAGGGGATT+TGG | 0.337868 | 1_3:-6738305 | Msa0100200:CDS |
| GATTACTGTGGTCTTAATCT+TGG | 0.346129 | 1_3:+6735327 | None:intergenic |
| GGAAAATATTGCACCTGAAA+AGG | 0.346437 | 1_3:+6735725 | None:intergenic |
| TATATGTAGGTTGTTAGATC+AGG | 0.348615 | 1_3:-6738313 | Msa0100200:intron |
| AGGAGGACCGACAGTTAGTT+TGG | 0.359188 | 1_3:+6736673 | None:intergenic |
| TGAAGATGCTGACTTGGATT+TGG | 0.367579 | 1_3:-6736993 | Msa0100200:CDS |
| TTGCAGGGTTTGAAGGATAG+TGG | 0.372922 | 1_3:-6735391 | Msa0100200:intron |
| CACACAGCTTATAAGACCTT+TGG | 0.374357 | 1_3:+6737668 | None:intergenic |
| ACACAGCTTATAAGACCTTT+GGG | 0.375552 | 1_3:+6737669 | None:intergenic |
| ATTGCTCCAGCTCTTATTGC+TGG | 0.384524 | 1_3:-6738025 | Msa0100200:CDS |
| GAGGAAGGAGTTAGAATTCT+CGG | 0.389121 | 1_3:-6738268 | Msa0100200:CDS |
| TATGGTACATTGCTTTCATA+TGG | 0.390165 | 1_3:-6737700 | Msa0100200:CDS |
| AGATTAACAGGATAGTTAAA+AGG | 0.392708 | 1_3:+6738061 | None:intergenic |
| GTACATTGCTTTCATATGGC+TGG | 0.398669 | 1_3:-6737696 | Msa0100200:CDS |
| TATTTAGTTCTTTCATTGCC+TGG | 0.403493 | 1_3:+6738214 | None:intergenic |
| CTTTATTGAAGGGTTGGTAA+TGG | 0.403798 | 1_3:-6736603 | Msa0100200:CDS |
| GCCAACACCTTCTTATACAA+TGG | 0.407521 | 1_3:-6735299 | Msa0100200:CDS |
| TCCACTCCCTGCCATTTGCT+TGG | 0.418783 | 1_3:+6739517 | None:intergenic |
| GGTTTGAAGGATAGTGGAAT+TGG | 0.422091 | 1_3:-6735385 | Msa0100200:CDS |
| TTAACAAGACACTCAGCAAT+AGG | 0.426100 | 1_3:+6738834 | None:intergenic |
| ATGTACCTTGGACCTTGAAA+TGG | 0.428401 | 1_3:+6739381 | None:intergenic |
| TATTGCTGAGTGTCTTGTTA+AGG | 0.430949 | 1_3:-6738832 | Msa0100200:CDS |
| ACATTAATCCTTAGTTTCAC+TGG | 0.432236 | 1_3:-6737103 | Msa0100200:intron |
| TGCAATGGTTCCTCTTCAAA+TGG | 0.433244 | 1_3:-6737047 | Msa0100200:CDS |
| TGATTTGTTGCAGGGTTTGA+AGG | 0.434669 | 1_3:-6735398 | Msa0100200:intron |
| TGCTAACTTTATTGAAGGGT+TGG | 0.434842 | 1_3:-6736609 | Msa0100200:CDS |
| CTGGTGGTTGGATTGATGAT+AGG | 0.435909 | 1_3:+6739410 | None:intergenic |
| CCAACACCTTCTTATACAAT+GGG | 0.438581 | 1_3:-6735298 | Msa0100200:CDS |
| ATATTTGCAGAGATTATAGA+TGG | 0.438746 | 1_3:-6739494 | Msa0100200:CDS |
| GAAAATATTGCACCTGAAAA+GGG | 0.439932 | 1_3:+6735726 | None:intergenic |
| TCCTCTGCTAACTTTATTGA+AGG | 0.440983 | 1_3:-6736614 | Msa0100200:CDS |
| TACCTTATGCAGTTCACCCC+TGG | 0.448155 | 1_3:+6737603 | None:intergenic |
| TGAAAGGAGGGTTCTCCTAC+AGG | 0.449738 | 1_3:-6736955 | Msa0100200:intron |
| TCAATTCAATTCCAAGCAAA+TGG | 0.450231 | 1_3:-6739528 | Msa0100200:exon |
| GACTTTCTTACAATGCATCC+AGG | 0.452616 | 1_3:-6737621 | Msa0100200:CDS |
| TACTTCAGTGACAGCATCCT+TGG | 0.455558 | 1_3:+6738794 | None:intergenic |
| TTCAATTCCAAGCAAATGGC+AGG | 0.458328 | 1_3:-6739524 | Msa0100200:exon |
| ATTGAATTGATTATACACTT+TGG | 0.459555 | 1_3:+6739541 | None:intergenic |
| ATAATGTTCGTTCCGATATG+AGG | 0.461487 | 1_3:-6736505 | Msa0100200:CDS |
| GTTCCGATATGAGGATATCA+TGG | 0.465033 | 1_3:-6736496 | Msa0100200:CDS |
| TGTTCTTGAAGATGCTGACT+TGG | 0.468639 | 1_3:-6736999 | Msa0100200:CDS |
| ATAAGCTGTGTGACAGGAAA+GGG | 0.469137 | 1_3:-6737657 | Msa0100200:CDS |
| TCAGTGACAGCATCCTTGGC+TGG | 0.470757 | 1_3:+6738798 | None:intergenic |
| ATTCTGATAACAGGCAAAAC+CGG | 0.474825 | 1_3:+6736458 | None:intergenic |
| TGCTGTAGCTGCACTACATA+TGG | 0.475429 | 1_3:-6737718 | Msa0100200:CDS |
| AGAATAAATTCCGTCGAAGA+AGG | 0.485859 | 1_3:-6736440 | Msa0100200:CDS |
| ACCTGAAAAGGGAAGTGATC+AGG | 0.486864 | 1_3:+6735737 | None:intergenic |
| TTCCCATGATATCCTCATAT+CGG | 0.487401 | 1_3:+6736493 | None:intergenic |
| AAGTGGAACAAATCCTCCTC+TGG | 0.487476 | 1_3:-6739443 | Msa0100200:CDS |
| ATATGTAGGTTGTTAGATCA+GGG | 0.488532 | 1_3:-6738312 | Msa0100200:intron |
| TATGGGCTAAAACTCCACTT+TGG | 0.488875 | 1_3:-6738911 | Msa0100200:CDS |
| GGTTGCTTTAGTCATGGAAT+CGG | 0.489106 | 1_3:-6736735 | Msa0100200:CDS |
| ATCCAGGGGTGAACTGCATA+AGG | 0.490005 | 1_3:-6737605 | Msa0100200:intron |
| ATATCATGGGAAGAACCATT+TGG | 0.490103 | 1_3:-6736482 | Msa0100200:CDS |
| ACAGGCAAAACCGGTCCAAA+TGG | 0.493625 | 1_3:+6736467 | None:intergenic |
| AGTTTCACTGGTGGGGACAC+TGG | 0.494684 | 1_3:-6737091 | Msa0100200:CDS |
| GGTCTTATAAGCTGTGTGAC+AGG | 0.497203 | 1_3:-6737663 | Msa0100200:CDS |
| TCAAAGATGCACAGCAGTAA+AGG | 0.504769 | 1_3:-6736756 | Msa0100200:CDS |
| TCCAAGCAAATGGCAGGGAG+TGG | 0.506297 | 1_3:-6739518 | Msa0100200:exon |
| ACAGGAAAGGGTTCTGAGAT+TGG | 0.507660 | 1_3:-6737645 | Msa0100200:CDS |
| CCACCAAGCTCCATTTGAAG+AGG | 0.508608 | 1_3:+6737037 | None:intergenic |
| GTTCCTCTTCAAATGGAGCT+TGG | 0.511297 | 1_3:-6737040 | Msa0100200:CDS |
| GTGATGTCGCAGTCATCCTC+AGG | 0.511676 | 1_3:+6736653 | None:intergenic |
| CAAGGCTGCAGCAATATTGA+AGG | 0.514089 | 1_3:-6738868 | Msa0100200:CDS |
| ATAAGCGATGCAATGGAGAC+AGG | 0.514767 | 1_3:-6735794 | Msa0100200:CDS |
| CCTCTTCAAATGGAGCTTGG+TGG | 0.517151 | 1_3:-6737037 | Msa0100200:CDS |
| ACTACTATGCAGATGGGAAG+TGG | 0.523545 | 1_3:-6739460 | Msa0100200:CDS |
| AAGTGATCAGGTCCGCGAGC+TGG | 0.523854 | 1_3:+6735749 | None:intergenic |
| AACAGCTTGTACACAGGAAG+AGG | 0.524957 | 1_3:-6738973 | Msa0100200:intron |
| GCTTTCAACTACTATGCAGA+TGG | 0.527011 | 1_3:-6739467 | Msa0100200:CDS |
| GGTCATCATGTTAATACTGT+TGG | 0.527504 | 1_3:+6735348 | None:intergenic |
| TAAATACTGTCTCACTTCAA+AGG | 0.527755 | 1_3:-6738197 | Msa0100200:intron |
| AATCCTTAGTTTCACTGGTG+GGG | 0.528272 | 1_3:-6737098 | Msa0100200:intron |
| AAAGAAAATCAAGGATAAAG+TGG | 0.530683 | 1_3:-6736696 | Msa0100200:CDS |
| TGCCAAGAATACAGAAGGGA+AGG | 0.531745 | 1_3:-6736554 | Msa0100200:CDS |
| ATGGGAAGAACCATTTGGAC+CGG | 0.532169 | 1_3:-6736477 | Msa0100200:CDS |
| GTAATGGATGCTAAGAAGAA+AGG | 0.533888 | 1_3:-6736587 | Msa0100200:CDS |
| CATACTTGTAAAGAAAATCA+AGG | 0.535139 | 1_3:-6736705 | Msa0100200:CDS |
| GAAGGGAAGGAAATCTCATA+TGG | 0.535932 | 1_3:-6736541 | Msa0100200:CDS |
| TAATCCTTAGTTTCACTGGT+GGG | 0.536871 | 1_3:-6737099 | Msa0100200:intron |
| CCTCTGCTAACTTTATTGAA+GGG | 0.538814 | 1_3:-6736613 | Msa0100200:CDS |
| ACTTTCTTACAATGCATCCA+GGG | 0.540072 | 1_3:-6737620 | Msa0100200:CDS |
| TCTTATCCCATTGTATAAGA+AGG | 0.542086 | 1_3:+6735292 | None:intergenic |
| CATATGGCTGGCTTCCCCAA+AGG | 0.543018 | 1_3:-6737684 | Msa0100200:CDS |
| TAGTTGTATACCTGGGTTGG+TGG | 0.543473 | 1_3:+6737983 | None:intergenic |
| GAGTTTCCAGCAATAAGAGC+TGG | 0.549640 | 1_3:+6738019 | None:intergenic |
| CAAAATTGCTTGCATTACAA+TGG | 0.559581 | 1_3:+6736411 | None:intergenic |
| GTGTCATATTGTGCAGAGGA+AGG | 0.561191 | 1_3:-6738283 | Msa0100200:CDS |
| CCCATTGTATAAGAAGGTGT+TGG | 0.561818 | 1_3:+6735298 | None:intergenic |
| TATAAGCTGTGTGACAGGAA+AGG | 0.564453 | 1_3:-6737658 | Msa0100200:CDS |
| TAACAGGATAGTTAAAAGGC+GGG | 0.565103 | 1_3:+6738065 | None:intergenic |
| GATAGTGGAATTGGTTCTCA+AGG | 0.566426 | 1_3:-6735376 | Msa0100200:CDS |
| GTAGCTGCTAACATTGTGAA+AGG | 0.567909 | 1_3:-6736971 | Msa0100200:CDS |
| AAAATCCATTTCAAGGTCCA+AGG | 0.568430 | 1_3:-6739386 | Msa0100200:intron |
| GGTTGGTGGTTTAAGGACAA+TGG | 0.570050 | 1_3:+6737997 | None:intergenic |
| CGAACATTATCCAACAAAAG+TGG | 0.572392 | 1_3:+6736518 | None:intergenic |
| CTTTCAACTACTATGCAGAT+GGG | 0.575718 | 1_3:-6739466 | Msa0100200:CDS |
| GGAGTTAGAATTCTCGGAGA+AGG | 0.577933 | 1_3:-6738262 | Msa0100200:CDS |
| TTGTGTGTGCAGATTCCACT+CGG | 0.578498 | 1_3:-6738103 | Msa0100200:intron |
| AGTAAAGGTTGCTTTAGTCA+TGG | 0.579116 | 1_3:-6736741 | Msa0100200:CDS |
| GCAGAGGATTCTGTGATGAC+CGG | 0.579247 | 1_3:+6736629 | None:intergenic |
| ATGGCGAATTCCTTCTTCGA+CGG | 0.589654 | 1_3:+6736430 | None:intergenic |
| CTGCTAACATTGTGAAAGGA+GGG | 0.598823 | 1_3:-6736967 | Msa0100200:CDS |
| TTAATCCTTAGTTTCACTGG+TGG | 0.600395 | 1_3:-6737100 | Msa0100200:intron |
| CCCTTCAATAAAGTTAGCAG+AGG | 0.600576 | 1_3:+6736613 | None:intergenic |
| GGAGATTGCAAAACCAGCCA+AGG | 0.600790 | 1_3:-6738811 | Msa0100200:CDS |
| AATATCAAAGAAGTCTGCAA+TGG | 0.609417 | 1_3:-6737062 | Msa0100200:CDS |
| GCTGCTAACATTGTGAAAGG+AGG | 0.613573 | 1_3:-6736968 | Msa0100200:CDS |
| TGTCCTTAAACCACCAACCC+AGG | 0.614373 | 1_3:-6737993 | Msa0100200:intron |
| TTCCGATATGAGGATATCAT+GGG | 0.614684 | 1_3:-6736495 | Msa0100200:CDS |
| GAATAGTTGTATACCTGGGT+TGG | 0.619472 | 1_3:+6737980 | None:intergenic |
| TATGTAGGTTGTTAGATCAG+GGG | 0.620747 | 1_3:-6738311 | Msa0100200:intron |
| AATGTTGATAAGCGATGCAA+TGG | 0.626313 | 1_3:-6735801 | Msa0100200:CDS |
| AGGATAGTTAAAAGGCGGGA+TGG | 0.627333 | 1_3:+6738069 | None:intergenic |
| ATCAATTCAGCACCAGCTCG+CGG | 0.632640 | 1_3:-6735761 | Msa0100200:CDS |
| AAGAGCAGAGTTGCTTCACA+AGG | 0.641127 | 1_3:-6738886 | Msa0100200:CDS |
| TTAACAGGATAGTTAAAAGG+CGG | 0.641435 | 1_3:+6738064 | None:intergenic |
| ACTAACTGTCGGTCCTCCTG+AGG | 0.641509 | 1_3:-6736669 | Msa0100200:CDS |
| TTTGGTGTCATATTGTGCAG+AGG | 0.648388 | 1_3:-6738287 | Msa0100200:CDS |
| TCAATTCCAAGCAAATGGCA+GGG | 0.650436 | 1_3:-6739523 | Msa0100200:exon |
| CTTTCTTACAATGCATCCAG+GGG | 0.660682 | 1_3:-6737619 | Msa0100200:CDS |
| AAAGTGGCCAAACTAACTGT+CGG | 0.661745 | 1_3:-6736680 | Msa0100200:CDS |
| CACAGCTTATAAGACCTTTG+GGG | 0.662828 | 1_3:+6737670 | None:intergenic |
| ATGTCGCAGTCATCCTCAGG+AGG | 0.676524 | 1_3:+6736656 | None:intergenic |
| ATGGCTAAAACAACTCCGAG+TGG | 0.678221 | 1_3:+6738088 | None:intergenic |
| GGATGACTGCGACATCACAC+CGG | 0.698931 | 1_3:-6736648 | Msa0100200:CDS |
| TGTTGGCAAGTTGATTACTG+TGG | 0.718041 | 1_3:+6735315 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAATAATATATATCA+TGG | - | chr1_3:6735793-6735812 | Msa0100200:CDS | 10.0% |
| !!! | TTAACTTTTCATTTATTTAA+TGG | - | chr1_3:6736111-6736130 | Msa0100200:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr1_3:6738753-6738772 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr1_3:6738754-6738773 | None:intergenic | 10.0% |
| !!! | TAAAATCATATTTTTTGTTT+TGG | + | chr1_3:6738897-6738916 | None:intergenic | 10.0% |
| !! | TAAGGAATATATATATAATT+AGG | + | chr1_3:6739219-6739238 | None:intergenic | 10.0% |
| !!! | ATTGAAAGTAAATTTTGATT+GGG | + | chr1_3:6735546-6735565 | None:intergenic | 15.0% |
| !!! | TTACAATTTTTTTTACTATC+TGG | - | chr1_3:6735845-6735864 | Msa0100200:intron | 15.0% |
| !!! | AATTTATAATTTGTTGTGTT+CGG | - | chr1_3:6736199-6736218 | Msa0100200:intron | 15.0% |
| !! | TATAGTTATTATGATGTATA+TGG | + | chr1_3:6736921-6736940 | None:intergenic | 15.0% |
| !! | AATCTAACTAATCTAATTAA+TGG | - | chr1_3:6737024-6737043 | Msa0100200:CDS | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | + | chr1_3:6738688-6738707 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | + | chr1_3:6738689-6738708 | None:intergenic | 15.0% |
| !! | AAAATGGAATATATTGAATT+GGG | + | chr1_3:6738729-6738748 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr1_3:6738752-6738771 | None:intergenic | 15.0% |
| !! | ATTGAATTGATTATACACTT+TGG | + | chr1_3:6735332-6735351 | None:intergenic | 20.0% |
| !!! | GATTGAAAGTAAATTTTGAT+TGG | + | chr1_3:6735547-6735566 | None:intergenic | 20.0% |
| !!! | TGTTGCTGATTTTTTTTTAA+AGG | - | chr1_3:6735820-6735839 | Msa0100200:CDS | 20.0% |
| !! | AAAAGTTGCTCAAAAATTAT+GGG | - | chr1_3:6735942-6735961 | Msa0100200:intron | 20.0% |
| !! | TAATATGTAACAATTGCATT+CGG | + | chr1_3:6737051-6737070 | None:intergenic | 20.0% |
| !! | TACCAAATGTATTATGAATA+GGG | - | chr1_3:6737129-6737148 | Msa0100200:intron | 20.0% |
| !! | TAATAAAACCAAAACAAAAG+TGG | + | chr1_3:6737330-6737349 | None:intergenic | 20.0% |
| !! | TAAAAAAATTCTTACTAGAG+AGG | - | chr1_3:6737705-6737724 | Msa0100200:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGTAAAT+GGG | + | chr1_3:6738619-6738638 | None:intergenic | 20.0% |
| !! | GAAAATGGAATATATTGAAT+TGG | + | chr1_3:6738730-6738749 | None:intergenic | 20.0% |
| !! | TAGGAAGAAAAAAAATTCAA+AGG | - | chr1_3:6739248-6739267 | Msa0100200:intron | 20.0% |
| !! | TTTCATATCTATTCTTAACA+AGG | + | chr1_3:6739376-6739395 | None:intergenic | 20.0% |
| ! | ATATTTGCAGAGATTATAGA+TGG | - | chr1_3:6735376-6735395 | Msa0100200:CDS | 25.0% |
| ! | ATATAATATGTCATGTACCT+TGG | + | chr1_3:6735504-6735523 | None:intergenic | 25.0% |
| ! | TTTCAATCTTTACTCTTTAC+CGG | - | chr1_3:6735559-6735578 | Msa0100200:intron | 25.0% |
| ! | TAGACTTATTGATCAAATAG+TGG | + | chr1_3:6735639-6735658 | None:intergenic | 25.0% |
| ! | TTGATCAATAAGTCTAACTA+TGG | - | chr1_3:6735643-6735662 | Msa0100200:intron | 25.0% |
| !! | AACATGATATCAATTAGTCT+TGG | + | chr1_3:6735729-6735748 | None:intergenic | 25.0% |
| ! | CAAAAGTTGCTCAAAAATTA+TGG | - | chr1_3:6735941-6735960 | Msa0100200:intron | 25.0% |
| !! | CATCAATATTTTGTATTCGA+TGG | - | chr1_3:6736275-6736294 | Msa0100200:intron | 25.0% |
| ! | TTTCAATATTCTTGATGTTG+CGG | - | chr1_3:6736332-6736351 | Msa0100200:intron | 25.0% |
| ! | AGATTAACAGGATAGTTAAA+AGG | + | chr1_3:6736812-6736831 | None:intergenic | 25.0% |
| ! | GTACCAAATGTATTATGAAT+AGG | - | chr1_3:6737128-6737147 | Msa0100200:intron | 25.0% |
| ! | TAAGGTAATATTCACTTCTT+CGG | - | chr1_3:6737283-6737302 | Msa0100200:intron | 25.0% |
| !!! | ATTATTGTCCACTTTTGTTT+TGG | - | chr1_3:6737319-6737338 | Msa0100200:intron | 25.0% |
| !! | GTCTTTTGTTAGCAATTTTA+CGG | - | chr1_3:6737453-6737472 | Msa0100200:intron | 25.0% |
| !! | TTTTGTAAGTTTGATACACT+CGG | - | chr1_3:6737545-6737564 | Msa0100200:intron | 25.0% |
| ! | TACCATCATTATTATCTACT+CGG | - | chr1_3:6737958-6737977 | Msa0100200:intron | 25.0% |
| ! | GTTATGAAATCAAGAAAATG+TGG | + | chr1_3:6738026-6738045 | None:intergenic | 25.0% |
| !! | ATTTTCTTTTGATATGTCAG+TGG | - | chr1_3:6738091-6738110 | Msa0100200:CDS | 25.0% |
| ! | CATACTTGTAAAGAAAATCA+AGG | - | chr1_3:6738165-6738184 | Msa0100200:intron | 25.0% |
| ! | AAAGAAAATCAAGGATAAAG+TGG | - | chr1_3:6738174-6738193 | Msa0100200:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGTAAA+TGG | + | chr1_3:6738620-6738639 | None:intergenic | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr1_3:6738641-6738660 | None:intergenic | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr1_3:6738642-6738661 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGGGGAAAA+TGG | + | chr1_3:6738745-6738764 | None:intergenic | 25.0% |
| !!! | ATTTTTTGTTTTGGAGAGAA+TGG | + | chr1_3:6738888-6738907 | None:intergenic | 25.0% |
| !! | AACGGCATTAATATTTTTCA+GGG | - | chr1_3:6738971-6738990 | Msa0100200:CDS | 25.0% |
| !!! | TATTTTATTTTGCATGACAC+AGG | - | chr1_3:6739015-6739034 | Msa0100200:intron | 25.0% |
| !!! | ATTTTATTTTGCATGACACA+GGG | - | chr1_3:6739016-6739035 | Msa0100200:intron | 25.0% |
| !!! | TTCGAAGGTATGAAATTTTA+TGG | + | chr1_3:6739189-6739208 | None:intergenic | 25.0% |
| !! | ATATTCCTTAAGTTGTTCTT+AGG | - | chr1_3:6739229-6739248 | Msa0100200:intron | 25.0% |
| ! | AATATGTTCATAAATCTGCA+TGG | + | chr1_3:6739399-6739418 | None:intergenic | 25.0% |
| TCAATTCAATTCCAAGCAAA+TGG | - | chr1_3:6735342-6735361 | Msa0100200:CDS | 30.0% | |
| !!! | AGTAAATTTTGATTGGGTGA+GGG | + | chr1_3:6735540-6735559 | None:intergenic | 30.0% |
| !!! | AAGTAAATTTTGATTGGGTG+AGG | + | chr1_3:6735541-6735560 | None:intergenic | 30.0% |
| TCACTTGTGCATTATAGAAT+TGG | + | chr1_3:6735585-6735604 | None:intergenic | 30.0% | |
| TGTGTGAGTTATTGATCTAA+TGG | - | chr1_3:6735680-6735699 | Msa0100200:intron | 30.0% | |
| !!! | TGTACAAGCTGTTTTTCATT+TGG | + | chr1_3:6735890-6735909 | None:intergenic | 30.0% |
| !!! | TGCACAAGGTTTTGAAATTT+CGG | - | chr1_3:6736306-6736325 | Msa0100200:intron | 30.0% |
| TAAATATGTTCACGACGTAA+AGG | + | chr1_3:6736416-6736435 | None:intergenic | 30.0% | |
| CCAAATCTAAGAAACAATAG+AGG | + | chr1_3:6736462-6736481 | None:intergenic | 30.0% | |
| ! | CCTCTATTGTTTCTTAGATT+TGG | - | chr1_3:6736459-6736478 | Msa0100200:CDS | 30.0% |
| ! | GCTACGACTTTTATATATGT+AGG | - | chr1_3:6736544-6736563 | Msa0100200:CDS | 30.0% |
| TATATGTAGGTTGTTAGATC+AGG | - | chr1_3:6736557-6736576 | Msa0100200:CDS | 30.0% | |
| ATATGTAGGTTGTTAGATCA+GGG | - | chr1_3:6736558-6736577 | Msa0100200:CDS | 30.0% | |
| !! | TATTTAGTTCTTTCATTGCC+TGG | + | chr1_3:6736659-6736678 | None:intergenic | 30.0% |
| TAAATACTGTCTCACTTCAA+AGG | - | chr1_3:6736673-6736692 | Msa0100200:CDS | 30.0% | |
| ATAACTATGTAAGAACAGAC+AGG | + | chr1_3:6736709-6736728 | None:intergenic | 30.0% | |
| TTAACAGGATAGTTAAAAGG+CGG | + | chr1_3:6736809-6736828 | None:intergenic | 30.0% | |
| ! | TTTGAAACAGCTAGATTAAC+AGG | + | chr1_3:6736824-6736843 | None:intergenic | 30.0% |
| CTATGAATAGTTGTATACCT+GGG | + | chr1_3:6736897-6736916 | None:intergenic | 30.0% | |
| TCTATGAATAGTTGTATACC+TGG | + | chr1_3:6736898-6736917 | None:intergenic | 30.0% | |
| CACCCTATTCATAATACATT+TGG | + | chr1_3:6737134-6737153 | None:intergenic | 30.0% | |
| TATGGTACATTGCTTTCATA+TGG | - | chr1_3:6737170-6737189 | Msa0100200:intron | 30.0% | |
| ! | TTCAGAGTAAACCATCATTT+TGG | - | chr1_3:6737358-6737377 | Msa0100200:intron | 30.0% |
| ACCAACAAAAGACAAATATG+AGG | - | chr1_3:6737517-6737536 | Msa0100200:intron | 30.0% | |
| ! | ACCTCATATTTGTCTTTTGT+TGG | + | chr1_3:6737521-6737540 | None:intergenic | 30.0% |
| TTTGTAAGTTTGATACACTC+GGG | - | chr1_3:6737546-6737565 | Msa0100200:intron | 30.0% | |
| ACATTAATCCTTAGTTTCAC+TGG | - | chr1_3:6737767-6737786 | Msa0100200:intron | 30.0% | |
| AATATCAAAGAAGTCTGCAA+TGG | - | chr1_3:6737808-6737827 | Msa0100200:intron | 30.0% | |
| ACCATCATTATTATCTACTC+GGG | - | chr1_3:6737959-6737978 | Msa0100200:intron | 30.0% | |
| ! | ATTTTGCCAAGAATACAGAA+GGG | - | chr1_3:6738312-6738331 | Msa0100200:intron | 30.0% |
| ACGGAATTTATTCTGATAAC+AGG | + | chr1_3:6738424-6738443 | None:intergenic | 30.0% | |
| CAAAATTGCTTGCATTACAA+TGG | + | chr1_3:6738462-6738481 | None:intergenic | 30.0% | |
| ! | CATTGTAATGCAAGCAATTT+TGG | - | chr1_3:6738460-6738479 | Msa0100200:intron | 30.0% |
| AAAACAATTAGCACCATCAT+AGG | - | chr1_3:6738539-6738558 | Msa0100200:intron | 30.0% | |
| ! | GAACGGCATTAATATTTTTC+AGG | - | chr1_3:6738970-6738989 | Msa0100200:CDS | 30.0% |
| !!! | TTTTATTTTGCATGACACAG+GGG | - | chr1_3:6739017-6739036 | Msa0100200:intron | 30.0% |
| GAAAATATTGCACCTGAAAA+GGG | + | chr1_3:6739147-6739166 | None:intergenic | 30.0% | |
| TAATTAGGATTGAAGTTCGA+AGG | + | chr1_3:6739204-6739223 | None:intergenic | 30.0% | |
| TTCTTCCTAAGAACAACTTA+AGG | + | chr1_3:6739237-6739256 | None:intergenic | 30.0% | |
| GTAGCTGCAATTTAATATCT+TGG | + | chr1_3:6739324-6739343 | None:intergenic | 30.0% | |
| CTTTCAACTACTATGCAGAT+GGG | - | chr1_3:6735404-6735423 | Msa0100200:intron | 35.0% | |
| ! | GATAGGAACAAATTTTCCAG+AGG | + | chr1_3:6735446-6735465 | None:intergenic | 35.0% |
| !! | AAATGGATTTTTCTGGTGGT+TGG | + | chr1_3:6735475-6735494 | None:intergenic | 35.0% |
| !! | CTTGAAATGGATTTTTCTGG+TGG | + | chr1_3:6735479-6735498 | None:intergenic | 35.0% |
| CACCAGAAAAATCCATTTCA+AGG | - | chr1_3:6735477-6735496 | Msa0100200:intron | 35.0% | |
| !! | GACCTTGAAATGGATTTTTC+TGG | + | chr1_3:6735482-6735501 | None:intergenic | 35.0% |
| AAAATCCATTTCAAGGTCCA+AGG | - | chr1_3:6735484-6735503 | Msa0100200:intron | 35.0% | |
| TTGTGCATTATAGAATTGGC+CGG | + | chr1_3:6735581-6735600 | None:intergenic | 35.0% | |
| ATGAAAAACAGCTTGTACAC+AGG | - | chr1_3:6735891-6735910 | Msa0100200:intron | 35.0% | |
| !!! | AGCAACTTTTGCTGATTCTA+TGG | + | chr1_3:6735932-6735951 | None:intergenic | 35.0% |
| TTAACAAGACACTCAGCAAT+AGG | + | chr1_3:6736039-6736058 | None:intergenic | 35.0% | |
| ! | TATTGCTGAGTGTCTTGTTA+AGG | - | chr1_3:6736038-6736057 | Msa0100200:intron | 35.0% |
| CTTGATGTTGCGGAAAATTA+TGG | - | chr1_3:6736342-6736361 | Msa0100200:intron | 35.0% | |
| CGTGAACATATTTACAGTTG+CGG | - | chr1_3:6736422-6736441 | Msa0100200:CDS | 35.0% | |
| TATGTAGGTTGTTAGATCAG+GGG | - | chr1_3:6736559-6736578 | Msa0100200:CDS | 35.0% | |
| TAACAGGATAGTTAAAAGGC+GGG | + | chr1_3:6736808-6736827 | None:intergenic | 35.0% | |
| ACACAGCTTATAAGACCTTT+GGG | + | chr1_3:6737204-6737223 | None:intergenic | 35.0% | |
| ACTTTCTTACAATGCATCCA+GGG | - | chr1_3:6737250-6737269 | Msa0100200:intron | 35.0% | |
| !! | CATTTTAGGGACCAAAATGA+TGG | + | chr1_3:6737372-6737391 | None:intergenic | 35.0% |
| TTGTAAGTTTGATACACTCG+GGG | - | chr1_3:6737547-6737566 | Msa0100200:intron | 35.0% | |
| !!! | TTTTAGTTCTTGAGTGTGTG+AGG | + | chr1_3:6737588-6737607 | None:intergenic | 35.0% |
| TAGTTACAACTTCCAACAAG+AGG | - | chr1_3:6737617-6737636 | Msa0100200:CDS | 35.0% | |
| TTAATCCTTAGTTTCACTGG+TGG | - | chr1_3:6737770-6737789 | Msa0100200:intron | 35.0% | |
| TAATCCTTAGTTTCACTGGT+GGG | - | chr1_3:6737771-6737790 | Msa0100200:intron | 35.0% | |
| ACCCGAGTAGATAATAATGA+TGG | + | chr1_3:6737963-6737982 | None:intergenic | 35.0% | |
| ! | AGTAAAGGTTGCTTTAGTCA+TGG | - | chr1_3:6738129-6738148 | Msa0100200:intron | 35.0% |
| TCCTCTGCTAACTTTATTGA+AGG | - | chr1_3:6738256-6738275 | Msa0100200:CDS | 35.0% | |
| CCTCTGCTAACTTTATTGAA+GGG | - | chr1_3:6738257-6738276 | Msa0100200:CDS | 35.0% | |
| TGCTAACTTTATTGAAGGGT+TGG | - | chr1_3:6738261-6738280 | Msa0100200:CDS | 35.0% | |
| !! | CTTTATTGAAGGGTTGGTAA+TGG | - | chr1_3:6738267-6738286 | Msa0100200:CDS | 35.0% |
| !! | GTAATGGATGCTAAGAAGAA+AGG | - | chr1_3:6738283-6738302 | Msa0100200:CDS | 35.0% |
| ! | CATTTTGCCAAGAATACAGA+AGG | - | chr1_3:6738311-6738330 | Msa0100200:intron | 35.0% |
| CGAACATTATCCAACAAAAG+TGG | + | chr1_3:6738355-6738374 | None:intergenic | 35.0% | |
| ATAATGTTCGTTCCGATATG+AGG | - | chr1_3:6738365-6738384 | Msa0100200:intron | 35.0% | |
| TTCCGATATGAGGATATCAT+GGG | - | chr1_3:6738375-6738394 | Msa0100200:intron | 35.0% | |
| TTCCCATGATATCCTCATAT+CGG | + | chr1_3:6738380-6738399 | None:intergenic | 35.0% | |
| ATATCATGGGAAGAACCATT+TGG | - | chr1_3:6738388-6738407 | Msa0100200:intron | 35.0% | |
| ATTCTGATAACAGGCAAAAC+CGG | + | chr1_3:6738415-6738434 | None:intergenic | 35.0% | |
| AGAATAAATTCCGTCGAAGA+AGG | - | chr1_3:6738430-6738449 | Msa0100200:intron | 35.0% | |
| TTAGCACCATCATAGGAAAA+AGG | - | chr1_3:6738546-6738565 | Msa0100200:intron | 35.0% | |
| AGTAAATGGGTCAGATATTC+CGG | + | chr1_3:6738606-6738625 | None:intergenic | 35.0% | |
| CCAAACTAGCTCATATATTC+CGG | - | chr1_3:6738788-6738807 | Msa0100200:intron | 35.0% | |
| CAAACTAGCTCATATATTCC+GGG | - | chr1_3:6738789-6738808 | Msa0100200:intron | 35.0% | |
| ! | AATGTTGATAAGCGATGCAA+TGG | - | chr1_3:6739069-6739088 | Msa0100200:intron | 35.0% |
| GGAAAATATTGCACCTGAAA+AGG | + | chr1_3:6739148-6739167 | None:intergenic | 35.0% | |
| TTTATGGCAACTTAGCAAGA+TGG | + | chr1_3:6739173-6739192 | None:intergenic | 35.0% | |
| GCTGCAATTTAATATCTTGG+TGG | + | chr1_3:6739321-6739340 | None:intergenic | 35.0% | |
| ATACTTTGGCAGTTTAGACA+TGG | + | chr1_3:6739453-6739472 | None:intergenic | 35.0% | |
| !! | CCAAAGTATGATTTGTTGCA+GGG | - | chr1_3:6739464-6739483 | Msa0100200:CDS | 35.0% |
| GGTCATCATGTTAATACTGT+TGG | + | chr1_3:6739525-6739544 | None:intergenic | 35.0% | |
| ! | GATTACTGTGGTCTTAATCT+TGG | + | chr1_3:6739546-6739565 | None:intergenic | 35.0% |
| CCAACACCTTCTTATACAAT+GGG | - | chr1_3:6739572-6739591 | Msa0100200:five_prime_UTR | 35.0% | |
| TTCAATTCCAAGCAAATGGC+AGG | - | chr1_3:6735346-6735365 | Msa0100200:CDS | 40.0% | |
| TCAATTCCAAGCAAATGGCA+GGG | - | chr1_3:6735347-6735366 | Msa0100200:CDS | 40.0% | |
| GCTTTCAACTACTATGCAGA+TGG | - | chr1_3:6735403-6735422 | Msa0100200:intron | 40.0% | |
| ! | AGGAACAAATTTTCCAGAGG+AGG | + | chr1_3:6735443-6735462 | None:intergenic | 40.0% |
| ATGTACCTTGGACCTTGAAA+TGG | + | chr1_3:6735492-6735511 | None:intergenic | 40.0% | |
| TTGATTGGGTGAGGGAAAAA+GGG | + | chr1_3:6735532-6735551 | None:intergenic | 40.0% | |
| TTTGATTGGGTGAGGGAAAA+AGG | + | chr1_3:6735533-6735552 | None:intergenic | 40.0% | |
| ! | TATGGGCTAAAACTCCACTT+TGG | - | chr1_3:6735959-6735978 | Msa0100200:intron | 40.0% |
| ! | AACTCTGCTCTTTTCCAAAG+TGG | + | chr1_3:6735976-6735995 | None:intergenic | 40.0% |
| !! | TTTGGTGTCATATTGTGCAG+AGG | - | chr1_3:6736583-6736602 | Msa0100200:CDS | 40.0% |
| GAGGAAGGAGTTAGAATTCT+CGG | - | chr1_3:6736602-6736621 | Msa0100200:CDS | 40.0% | |
| GAATAGTTGTATACCTGGGT+TGG | + | chr1_3:6736893-6736912 | None:intergenic | 40.0% | |
| GTACATTGCTTTCATATGGC+TGG | - | chr1_3:6737174-6737193 | Msa0100200:intron | 40.0% | |
| CACAGCTTATAAGACCTTTG+GGG | + | chr1_3:6737203-6737222 | None:intergenic | 40.0% | |
| CACACAGCTTATAAGACCTT+TGG | + | chr1_3:6737205-6737224 | None:intergenic | 40.0% | |
| TATAAGCTGTGTGACAGGAA+AGG | - | chr1_3:6737212-6737231 | Msa0100200:intron | 40.0% | |
| ATAAGCTGTGTGACAGGAAA+GGG | - | chr1_3:6737213-6737232 | Msa0100200:intron | 40.0% | |
| GACTTTCTTACAATGCATCC+AGG | - | chr1_3:6737249-6737268 | Msa0100200:intron | 40.0% | |
| CTTTCTTACAATGCATCCAG+GGG | - | chr1_3:6737251-6737270 | Msa0100200:intron | 40.0% | |
| TTTGGTCCCTAAAATGTGTG+AGG | - | chr1_3:6737376-6737395 | Msa0100200:intron | 40.0% | |
| ! | ACACTGCCTCACACATTTTA+GGG | + | chr1_3:6737385-6737404 | None:intergenic | 40.0% |
| GCTAACAAAAGACACACTCA+AGG | + | chr1_3:6737446-6737465 | None:intergenic | 40.0% | |
| AATCCTTAGTTTCACTGGTG+GGG | - | chr1_3:6737772-6737791 | Msa0100200:intron | 40.0% | |
| TGCAATGGTTCCTCTTCAAA+TGG | - | chr1_3:6737823-6737842 | Msa0100200:intron | 40.0% | |
| ! | TGTTCTTGAAGATGCTGACT+TGG | - | chr1_3:6737871-6737890 | Msa0100200:intron | 40.0% |
| !! | TGAAGATGCTGACTTGGATT+TGG | - | chr1_3:6737877-6737896 | Msa0100200:intron | 40.0% |
| GTAGCTGCTAACATTGTGAA+AGG | - | chr1_3:6737899-6737918 | Msa0100200:intron | 40.0% | |
| CTGCTAACATTGTGAAAGGA+GGG | - | chr1_3:6737903-6737922 | Msa0100200:intron | 40.0% | |
| ! | TATGTGCTACTGTTACCTGT+AGG | + | chr1_3:6737933-6737952 | None:intergenic | 40.0% |
| TCAAAGATGCACAGCAGTAA+AGG | - | chr1_3:6738114-6738133 | Msa0100200:intron | 40.0% | |
| ! | GGTTGCTTTAGTCATGGAAT+CGG | - | chr1_3:6738135-6738154 | Msa0100200:intron | 40.0% |
| AAAGTGGCCAAACTAACTGT+CGG | - | chr1_3:6738190-6738209 | Msa0100200:intron | 40.0% | |
| CCCTTCAATAAAGTTAGCAG+AGG | + | chr1_3:6738260-6738279 | None:intergenic | 40.0% | |
| TTCCTTCCCTTCTGTATTCT+TGG | + | chr1_3:6738321-6738340 | None:intergenic | 40.0% | |
| GAAGGGAAGGAAATCTCATA+TGG | - | chr1_3:6738329-6738348 | Msa0100200:intron | 40.0% | |
| !!! | TCTCATATGGCCACTTTTGT+TGG | - | chr1_3:6738342-6738361 | Msa0100200:intron | 40.0% |
| GTTCCGATATGAGGATATCA+TGG | - | chr1_3:6738374-6738393 | Msa0100200:intron | 40.0% | |
| GACACTCATACTATACCTGA+AGG | + | chr1_3:6738486-6738505 | None:intergenic | 40.0% | |
| ! | GTGCATCCTTTTTCCTATGA+TGG | + | chr1_3:6738555-6738574 | None:intergenic | 40.0% |
| CCGGAATATATGAGCTAGTT+TGG | + | chr1_3:6738791-6738810 | None:intergenic | 40.0% | |
| CAGCTACATACTTACAGTCA+TGG | - | chr1_3:6739337-6739356 | Msa0100200:intron | 40.0% | |
| !! | GCCAAAGTATGATTTGTTGC+AGG | - | chr1_3:6739463-6739482 | Msa0100200:CDS | 40.0% |
| CCCTGCAACAAATCATACTT+TGG | + | chr1_3:6739467-6739486 | None:intergenic | 40.0% | |
| !! | TGATTTGTTGCAGGGTTTGA+AGG | - | chr1_3:6739472-6739491 | Msa0100200:CDS | 40.0% |
| !! | GGTTTGAAGGATAGTGGAAT+TGG | - | chr1_3:6739485-6739504 | Msa0100200:CDS | 40.0% |
| !! | GATAGTGGAATTGGTTCTCA+AGG | - | chr1_3:6739494-6739513 | Msa0100200:CDS | 40.0% |
| !! | TGTTGGCAAGTTGATTACTG+TGG | + | chr1_3:6739558-6739577 | None:intergenic | 40.0% |
| GCCAACACCTTCTTATACAA+TGG | - | chr1_3:6739571-6739590 | Msa0100200:five_prime_UTR | 40.0% | |
| ! | CCCATTGTATAAGAAGGTGT+TGG | + | chr1_3:6739575-6739594 | None:intergenic | 40.0% |
| ACTACTATGCAGATGGGAAG+TGG | - | chr1_3:6735410-6735429 | Msa0100200:intron | 45.0% | |
| AAGTGGAACAAATCCTCCTC+TGG | - | chr1_3:6735427-6735446 | Msa0100200:intron | 45.0% | |
| ! | CTGGTGGTTGGATTGATGAT+AGG | + | chr1_3:6735463-6735482 | None:intergenic | 45.0% |
| AGTGGAAATAAGCTTGTGCG+CGG | + | chr1_3:6735621-6735640 | None:intergenic | 45.0% | |
| AACAGCTTGTACACAGGAAG+AGG | - | chr1_3:6735897-6735916 | Msa0100200:intron | 45.0% | |
| AAGAGCAGAGTTGCTTCACA+AGG | - | chr1_3:6735984-6736003 | Msa0100200:intron | 45.0% | |
| CAAGGCTGCAGCAATATTGA+AGG | - | chr1_3:6736002-6736021 | Msa0100200:intron | 45.0% | |
| TACTTCAGTGACAGCATCCT+TGG | + | chr1_3:6736079-6736098 | None:intergenic | 45.0% | |
| GGTTGTTAGATCAGGGGATT+TGG | - | chr1_3:6736565-6736584 | Msa0100200:CDS | 45.0% | |
| GTGTCATATTGTGCAGAGGA+AGG | - | chr1_3:6736587-6736606 | Msa0100200:CDS | 45.0% | |
| GGAGTTAGAATTCTCGGAGA+AGG | - | chr1_3:6736608-6736627 | Msa0100200:CDS | 45.0% | |
| TCTCGGAGAAGGAAAGTTTC+TGG | - | chr1_3:6736619-6736638 | Msa0100200:CDS | 45.0% | |
| ! | CTGGTCTCTGATAGTTTTCC+AGG | - | chr1_3:6736638-6736657 | Msa0100200:CDS | 45.0% |
| TTGTGTGTGCAGATTCCACT+CGG | - | chr1_3:6736767-6736786 | Msa0100200:intron | 45.0% | |
| ATGGCTAAAACAACTCCGAG+TGG | + | chr1_3:6736785-6736804 | None:intergenic | 45.0% | |
| AGGATAGTTAAAAGGCGGGA+TGG | + | chr1_3:6736804-6736823 | None:intergenic | 45.0% | |
| ATTGCTCCAGCTCTTATTGC+TGG | - | chr1_3:6736845-6736864 | Msa0100200:intron | 45.0% | |
| GAGTTTCCAGCAATAAGAGC+TGG | + | chr1_3:6736854-6736873 | None:intergenic | 45.0% | |
| !! | GGTTGGTGGTTTAAGGACAA+TGG | + | chr1_3:6736876-6736895 | None:intergenic | 45.0% |
| !! | ATACCTGGGTTGGTGGTTTA+AGG | + | chr1_3:6736883-6736902 | None:intergenic | 45.0% |
| ! | TAGTTGTATACCTGGGTTGG+TGG | + | chr1_3:6736890-6736909 | None:intergenic | 45.0% |
| TGCTGTAGCTGCACTACATA+TGG | - | chr1_3:6737152-6737171 | Msa0100200:intron | 45.0% | |
| ! | GGTCTTATAAGCTGTGTGAC+AGG | - | chr1_3:6737207-6737226 | Msa0100200:intron | 45.0% |
| !! | ACAGGAAAGGGTTCTGAGAT+TGG | - | chr1_3:6737225-6737244 | Msa0100200:intron | 45.0% |
| ! | GACACTGCCTCACACATTTT+AGG | + | chr1_3:6737386-6737405 | None:intergenic | 45.0% |
| TAGTTCTTGAGTGTGTGAGG+CGG | + | chr1_3:6737585-6737604 | None:intergenic | 45.0% | |
| ATCTTGCTTGAGCCTCTTGT+TGG | + | chr1_3:6737632-6737651 | None:intergenic | 45.0% | |
| GTTCCTCTTCAAATGGAGCT+TGG | - | chr1_3:6737830-6737849 | Msa0100200:intron | 45.0% | |
| GCTGCTAACATTGTGAAAGG+AGG | - | chr1_3:6737902-6737921 | Msa0100200:intron | 45.0% | |
| TGCCAAGAATACAGAAGGGA+AGG | - | chr1_3:6738316-6738335 | Msa0100200:intron | 45.0% | |
| ATGGGAAGAACCATTTGGAC+CGG | - | chr1_3:6738393-6738412 | Msa0100200:intron | 45.0% | |
| ATGGCGAATTCCTTCTTCGA+CGG | + | chr1_3:6738443-6738462 | None:intergenic | 45.0% | |
| !! | TGCAAGCAATTTTGGCCTTC+AGG | - | chr1_3:6738468-6738487 | Msa0100200:intron | 45.0% |
| ATGGGTCAGATATTCCGGTA+CGG | + | chr1_3:6738601-6738620 | None:intergenic | 45.0% | |
| CTAGCTCATATATTCCGGGA+CGG | - | chr1_3:6738793-6738812 | Msa0100200:intron | 45.0% | |
| TCACTGCATTCTCTGTCGAA+CGG | - | chr1_3:6738953-6738972 | Msa0100200:CDS | 45.0% | |
| ATAAGCGATGCAATGGAGAC+AGG | - | chr1_3:6739076-6739095 | Msa0100200:intron | 45.0% | |
| ! | ACCTGATCACTTCCCTTTTC+AGG | - | chr1_3:6739132-6739151 | Msa0100200:intron | 45.0% |
| ACCTGAAAAGGGAAGTGATC+AGG | + | chr1_3:6739136-6739155 | None:intergenic | 45.0% | |
| TGGCAACTTAGCAAGATGGA+GGG | + | chr1_3:6739169-6739188 | None:intergenic | 45.0% | |
| ATGGCAACTTAGCAAGATGG+AGG | + | chr1_3:6739170-6739189 | None:intergenic | 45.0% | |
| TTGCAGGGTTTGAAGGATAG+TGG | - | chr1_3:6739479-6739498 | Msa0100200:CDS | 45.0% | |
| GGAGATTGCAAAACCAGCCA+AGG | - | chr1_3:6736059-6736078 | Msa0100200:intron | 50.0% | |
| CGATGGCTATGTTGTGCACA+AGG | - | chr1_3:6736292-6736311 | Msa0100200:intron | 50.0% | |
| TGTCCTTAAACCACCAACCC+AGG | - | chr1_3:6736877-6736896 | Msa0100200:intron | 50.0% | |
| ATCCAGGGGTGAACTGCATA+AGG | - | chr1_3:6737265-6737284 | Msa0100200:intron | 50.0% | |
| TACCTTATGCAGTTCACCCC+TGG | + | chr1_3:6737270-6737289 | None:intergenic | 50.0% | |
| TGTCCCCACCAGTGAAACTA+AGG | + | chr1_3:6737778-6737797 | None:intergenic | 50.0% | |
| CCACCAAGCTCCATTTGAAG+AGG | + | chr1_3:6737836-6737855 | None:intergenic | 50.0% | |
| CCTCTTCAAATGGAGCTTGG+TGG | - | chr1_3:6737833-6737852 | Msa0100200:intron | 50.0% | |
| TGAAAGGAGGGTTCTCCTAC+AGG | - | chr1_3:6737915-6737934 | Msa0100200:intron | 50.0% | |
| AGGAGGACCGACAGTTAGTT+TGG | + | chr1_3:6738200-6738219 | None:intergenic | 50.0% | |
| GCAGAGGATTCTGTGATGAC+CGG | + | chr1_3:6738244-6738263 | None:intergenic | 50.0% | |
| ACAGGCAAAACCGGTCCAAA+TGG | + | chr1_3:6738406-6738425 | None:intergenic | 50.0% | |
| CTCTAATACTCCCTCCGTAC+CGG | - | chr1_3:6738584-6738603 | Msa0100200:intron | 50.0% | |
| GTCAGATATTCCGGTACGGA+GGG | + | chr1_3:6738597-6738616 | None:intergenic | 50.0% | |
| CTCATATATTCCGGGACGGA+GGG | - | chr1_3:6738797-6738816 | Msa0100200:CDS | 50.0% | |
| ATAGAATACTCCCTCCGTCC+CGG | + | chr1_3:6738810-6738829 | None:intergenic | 50.0% | |
| ATCAATTCAGCACCAGCTCG+CGG | - | chr1_3:6739109-6739128 | Msa0100200:intron | 50.0% | |
| TCCAAGCAAATGGCAGGGAG+TGG | - | chr1_3:6735352-6735371 | Msa0100200:CDS | 55.0% | |
| ! | TCCACTCCCTGCCATTTGCT+TGG | + | chr1_3:6735356-6735375 | None:intergenic | 55.0% |
| TCAGTGACAGCATCCTTGGC+TGG | + | chr1_3:6736075-6736094 | None:intergenic | 55.0% | |
| ATGTCTGTGCGAGCGCATTG+TGG | + | chr1_3:6736387-6736406 | None:intergenic | 55.0% | |
| !! | CATATGGCTGGCTTCCCCAA+AGG | - | chr1_3:6737186-6737205 | Msa0100200:intron | 55.0% |
| AGTTTCACTGGTGGGGACAC+TGG | - | chr1_3:6737779-6737798 | Msa0100200:intron | 55.0% | |
| ACTAACTGTCGGTCCTCCTG+AGG | - | chr1_3:6738201-6738220 | Msa0100200:CDS | 55.0% | |
| ATGTCGCAGTCATCCTCAGG+AGG | + | chr1_3:6738217-6738236 | None:intergenic | 55.0% | |
| GTGATGTCGCAGTCATCCTC+AGG | + | chr1_3:6738220-6738239 | None:intergenic | 55.0% | |
| GGATGACTGCGACATCACAC+CGG | - | chr1_3:6738222-6738241 | Msa0100200:CDS | 55.0% | |
| GGTCAGATATTCCGGTACGG+AGG | + | chr1_3:6738598-6738617 | None:intergenic | 55.0% | |
| GCTCATATATTCCGGGACGG+AGG | - | chr1_3:6738796-6738815 | Msa0100200:intron | 55.0% | |
| GCGCATTGTGGCTGCATCGT+CGG | + | chr1_3:6736375-6736394 | None:intergenic | 60.0% | |
| AAGTGATCAGGTCCGCGAGC+TGG | + | chr1_3:6739124-6739143 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 6735294 | 6739598 | 6735294 | ID=Msa0100200;Name=Msa0100200 |
| chr1_3 | mRNA | 6735294 | 6739598 | 6735294 | ID=Msa0100200-mRNA-1;Parent=Msa0100200;Name=Msa0100200-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|0.75|0.66|1|1|1|9|0|496 |
| chr1_3 | exon | 6735294 | 6735407 | 6735294 | ID=Msa0100200-mRNA-1:exon:2536;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6735739 | 6735855 | 6735739 | ID=Msa0100200-mRNA-1:exon:2535;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6736403 | 6736781 | 6736403 | ID=Msa0100200-mRNA-1:exon:2534;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6736956 | 6737111 | 6736956 | ID=Msa0100200-mRNA-1:exon:2533;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6737606 | 6737742 | 6737606 | ID=Msa0100200-mRNA-1:exon:2532;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6737994 | 6738113 | 6737994 | ID=Msa0100200-mRNA-1:exon:2531;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6738198 | 6738326 | 6738198 | ID=Msa0100200-mRNA-1:exon:2530;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6738797 | 6738990 | 6738797 | ID=Msa0100200-mRNA-1:exon:2529;Parent=Msa0100200-mRNA-1 |
| chr1_3 | exon | 6739387 | 6739598 | 6739387 | ID=Msa0100200-mRNA-1:exon:2528;Parent=Msa0100200-mRNA-1 |
| chr1_3 | five_prime_UTR | 6739532 | 6739598 | 6739532 | ID=Msa0100200-mRNA-1:five_prime_utr;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6739387 | 6739531 | 6739387 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6738797 | 6738990 | 6738797 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6738198 | 6738326 | 6738198 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6737994 | 6738113 | 6737994 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6737606 | 6737742 | 6737606 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6736956 | 6737111 | 6736956 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6736403 | 6736781 | 6736403 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6735739 | 6735855 | 6735739 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| chr1_3 | CDS | 6735294 | 6735407 | 6735294 | ID=Msa0100200-mRNA-1:cds;Parent=Msa0100200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
