Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805890 | QCD89882.1 | 49.937 | 797 | 266 | 17 | 57 | 724 | 1 | 793 | 0.0 | 682 |
| Msa0805890 | QCD89882.1 | 52.830 | 424 | 110 | 11 | 24 | 364 | 350 | 766 | 2.63e-120 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805890 | A0A4D6LM61 | 49.937 | 797 | 266 | 17 | 57 | 724 | 1 | 793 | 0.0 | 682 |
| Msa0805890 | A0A4D6LM61 | 52.830 | 424 | 110 | 11 | 24 | 364 | 350 | 766 | 1.26e-120 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023060 | Msa0805890 | 0.803832 | 2.887507e-49 | -8.615850e-47 |
| Msa0026630 | Msa0805890 | 0.801077 | 1.067267e-48 | -8.615850e-47 |
| Msa0051960 | Msa0805890 | 0.806815 | 6.847796e-50 | -8.615850e-47 |
| Msa0101960 | Msa0805890 | 0.812111 | 4.996202e-51 | -8.615850e-47 |
| Msa0613340 | Msa0805890 | 0.807725 | 4.391983e-50 | -8.615850e-47 |
| Msa0632650 | Msa0805890 | 0.809521 | 1.816294e-50 | -8.615850e-47 |
| Msa0635270 | Msa0805890 | 0.819387 | 1.192714e-52 | -8.615850e-47 |
| Msa0641130 | Msa0805890 | 0.807235 | 5.581371e-50 | -8.615850e-47 |
| Msa0662580 | Msa0805890 | 0.812401 | 4.318126e-51 | -8.615850e-47 |
| Msa0671860 | Msa0805890 | 0.804172 | 2.453754e-49 | -8.615850e-47 |
| Msa0704680 | Msa0805890 | 0.808860 | 2.516262e-50 | -8.615850e-47 |
| Msa0723580 | Msa0805890 | 0.920752 | 8.588091e-88 | -8.615850e-47 |
| Msa0764070 | Msa0805890 | 0.915872 | 3.510306e-85 | -8.615850e-47 |
| Msa0772740 | Msa0805890 | 0.800961 | 1.127054e-48 | -8.615850e-47 |
| Msa0775160 | Msa0805890 | 0.801663 | 8.096990e-49 | -8.615850e-47 |
| Msa0805890 | Msa0805910 | 0.901436 | 2.686119e-78 | -8.615850e-47 |
| Msa0805890 | Msa0809940 | 0.808634 | 2.812904e-50 | -8.615850e-47 |
| Msa0805890 | Msa0832950 | 0.802572 | 5.265521e-49 | -8.615850e-47 |
| Msa0805890 | Msa0843700 | 0.800270 | 1.559201e-48 | -8.615850e-47 |
| Msa0805890 | Msa1159170 | 0.800547 | 1.369574e-48 | -8.615850e-47 |
| Msa0805890 | Msa1181140 | 0.827446 | 1.557127e-54 | -8.615850e-47 |
| Msa0805890 | Msa1225580 | 0.809687 | 1.673132e-50 | -8.615850e-47 |
| Msa0805890 | Msa1256060 | 0.811021 | 8.621450e-51 | -8.615850e-47 |
| Msa0805890 | Msa1276520 | 0.803134 | 4.029653e-49 | -8.615850e-47 |
| Msa0805890 | Msa1277670 | 0.803647 | 3.155045e-49 | -8.615850e-47 |
| Msa0805890 | Msa1312440 | 0.802197 | 6.290054e-49 | -8.615850e-47 |
| Msa0805890 | Msa1355510 | 0.800919 | 1.149825e-48 | -8.615850e-47 |
| Msa0805890 | Msa1398900 | 0.801581 | 8.416099e-49 | -8.615850e-47 |
| Msa0805890 | Msa1447880 | 0.800848 | 1.189050e-48 | -8.615850e-47 |
| Msa0187310 | Msa0805890 | 0.813919 | 2.005815e-51 | -8.615850e-47 |
| Msa0264680 | Msa0805890 | 0.800872 | 1.175439e-48 | -8.615850e-47 |
| Msa0302730 | Msa0805890 | 0.816952 | 4.240523e-52 | -8.615850e-47 |
| Msa0307420 | Msa0805890 | 0.806116 | 9.615293e-50 | -8.615850e-47 |
| Msa0335070 | Msa0805890 | 0.818275 | 2.134030e-52 | -8.615850e-47 |
| Msa0536540 | Msa0805890 | 0.825317 | 5.006977e-54 | -8.615850e-47 |
| Msa0592650 | Msa0805890 | 0.822682 | 2.079039e-53 | -8.615850e-47 |
| Msa0600590 | Msa0805890 | 0.816054 | 6.737468e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805890 | MtrunA17_Chr5g0414461 | 85.263 | 380 | 40 | 1 | 361 | 724 | 1 | 380 | 0.0 | 675 |
| Msa0805890 | MtrunA17_Chr5g0414461 | 69.529 | 361 | 65 | 7 | 57 | 372 | 1 | 361 | 2.11e-160 | 468 |
| Msa0805890 | MtrunA17_Chr5g0414371 | 79.545 | 352 | 28 | 4 | 57 | 364 | 1 | 352 | 0.0 | 548 |
| Msa0805890 | MtrunA17_Chr5g0414371 | 70.712 | 379 | 92 | 3 | 361 | 722 | 1 | 377 | 0.0 | 542 |
| Msa0805890 | MtrunA17_Chr5g0414421 | 68.957 | 393 | 96 | 3 | 356 | 724 | 26 | 416 | 0.0 | 545 |
| Msa0805890 | MtrunA17_Chr5g0414421 | 74.406 | 379 | 46 | 4 | 40 | 367 | 14 | 392 | 0.0 | 544 |
| Msa0805890 | MtrunA17_Chr5g0414441 | 76.860 | 363 | 32 | 4 | 57 | 367 | 1 | 363 | 0.0 | 539 |
| Msa0805890 | MtrunA17_Chr5g0414441 | 68.123 | 389 | 97 | 4 | 361 | 724 | 1 | 387 | 0.0 | 523 |
| Msa0805890 | MtrunA17_Chr5g0414391 | 67.717 | 381 | 106 | 2 | 361 | 724 | 1 | 381 | 8.65e-179 | 515 |
| Msa0805890 | MtrunA17_Chr5g0414391 | 74.510 | 357 | 45 | 5 | 57 | 367 | 1 | 357 | 2.57e-173 | 501 |
| Msa0805890 | MtrunA17_Chr0c01g0489311 | 45.088 | 397 | 181 | 9 | 364 | 724 | 4 | 399 | 1.22e-100 | 315 |
| Msa0805890 | MtrunA17_Chr0c01g0489311 | 48.011 | 377 | 128 | 14 | 57 | 367 | 1 | 375 | 1.49e-85 | 275 |
| Msa0805890 | MtrunA17_Chr6g0456421 | 36.881 | 404 | 203 | 11 | 364 | 724 | 4 | 398 | 9.36e-72 | 239 |
| Msa0805890 | MtrunA17_Chr6g0456421 | 39.037 | 374 | 165 | 9 | 57 | 367 | 1 | 374 | 3.34e-67 | 227 |
| Msa0805890 | MtrunA17_Chr5g0414451 | 79.798 | 99 | 6 | 1 | 145 | 229 | 1 | 99 | 8.41e-47 | 161 |
| Msa0805890 | MtrunA17_Chr5g0414451 | 63.636 | 99 | 36 | 0 | 457 | 555 | 1 | 99 | 9.64e-37 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0805890 | AT1G13510.1 | 40.000 | 390 | 192 | 13 | 364 | 724 | 4 | 380 | 6.18e-75 | 247 |
| Msa0805890 | AT1G13510.1 | 39.344 | 366 | 157 | 13 | 57 | 367 | 1 | 356 | 1.33e-61 | 211 |
| Msa0805890 | AT1G13540.1 | 41.176 | 391 | 187 | 13 | 364 | 724 | 4 | 381 | 9.97e-75 | 246 |
| Msa0805890 | AT1G13540.1 | 36.957 | 368 | 164 | 12 | 57 | 367 | 1 | 357 | 6.51e-60 | 207 |
| Msa0805890 | AT1G13480.1 | 38.579 | 394 | 199 | 10 | 364 | 724 | 4 | 387 | 2.71e-73 | 243 |
| Msa0805890 | AT1G13480.1 | 38.859 | 368 | 157 | 11 | 57 | 364 | 1 | 360 | 1.47e-62 | 214 |
| Msa0805890 | AT1G13530.1 | 41.985 | 393 | 185 | 13 | 364 | 724 | 4 | 385 | 3.58e-73 | 243 |
| Msa0805890 | AT1G13530.1 | 39.344 | 366 | 156 | 13 | 57 | 364 | 1 | 358 | 5.00e-61 | 210 |
| Msa0805890 | AT1G13550.1 | 39.286 | 392 | 194 | 11 | 364 | 721 | 4 | 385 | 1.07e-71 | 239 |
| Msa0805890 | AT1G13550.1 | 36.658 | 371 | 160 | 12 | 57 | 363 | 1 | 360 | 8.36e-57 | 199 |
| Msa0805890 | AT1G13490.2 | 40.464 | 388 | 195 | 11 | 364 | 724 | 4 | 382 | 3.51e-70 | 234 |
| Msa0805890 | AT1G13490.2 | 39.178 | 365 | 155 | 14 | 57 | 364 | 1 | 355 | 2.55e-59 | 205 |
| Msa0805890 | AT1G13520.1 | 38.832 | 394 | 198 | 13 | 364 | 724 | 4 | 387 | 1.02e-69 | 233 |
| Msa0805890 | AT1G13520.1 | 38.108 | 370 | 157 | 14 | 57 | 364 | 1 | 360 | 3.05e-62 | 213 |
| Msa0805890 | AT1G13490.1 | 41.823 | 373 | 192 | 12 | 364 | 724 | 4 | 363 | 1.57e-68 | 229 |
| Msa0805890 | AT1G13490.1 | 38.462 | 351 | 158 | 14 | 57 | 364 | 1 | 336 | 1.01e-52 | 187 |
| Msa0805890 | AT1G13500.1 | 40.458 | 393 | 192 | 15 | 364 | 724 | 4 | 386 | 2.11e-64 | 219 |
| Msa0805890 | AT1G13500.1 | 37.602 | 367 | 162 | 14 | 57 | 364 | 1 | 359 | 5.06e-54 | 191 |
| Msa0805890 | AT1G13470.1 | 38.205 | 390 | 197 | 13 | 364 | 724 | 4 | 378 | 4.26e-64 | 218 |
| Msa0805890 | AT1G13470.1 | 39.011 | 364 | 153 | 14 | 57 | 364 | 1 | 351 | 2.39e-58 | 202 |
| Msa0805890 | AT1G61600.1 | 34.524 | 420 | 214 | 11 | 364 | 724 | 4 | 421 | 1.04e-62 | 216 |
| Msa0805890 | AT1G61600.1 | 34.343 | 396 | 170 | 11 | 57 | 364 | 1 | 394 | 5.62e-52 | 186 |
Find 163 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAACAATCATTGAAAAT+TGG | 0.131773 | 5_3:+22949105 | None:intergenic |
| GAATTCCTTGTGGTTTATTA+AGG | 0.154134 | 5_3:-22946227 | Msa0805890:CDS |
| CACATCAAATTAGGAGTAAA+TGG | 0.167671 | 5_3:-22945582 | Msa0805890:CDS |
| ATTACAAGATACCCGGAATT+TGG | 0.193937 | 5_3:+22946968 | None:intergenic |
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5_3:+22949836 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5_3:-22949831 | Msa0805890:CDS |
| CCTTCCTTCACAAACATAAA+AGG | 0.226109 | 5_3:+22946048 | None:intergenic |
| TTGAATTTGGAAGTTGTTAA+AGG | 0.232384 | 5_3:-22945790 | Msa0805890:CDS |
| AGCCTAAAGCTTGGCTTAAA+TGG | 0.235862 | 5_3:+22949169 | None:intergenic |
| TATGTAACACTTGAACAATT+TGG | 0.238831 | 5_3:+22950599 | None:intergenic |
| ACTAGTGTATGCTGCCATTT+TGG | 0.250791 | 5_3:-22946354 | Msa0805890:CDS |
| CTCTCCTTCACAAACATAAA+TGG | 0.257853 | 5_3:+22949054 | None:intergenic |
| GAAGGAGAGAATGAATTTAA+AGG | 0.260016 | 5_3:-22949040 | Msa0805890:intron |
| AAAATTGGGAAGTTGAAATT+TGG | 0.260333 | 5_3:+22949120 | None:intergenic |
| TTCCGGGTATCTTGTAATAT+TGG | 0.269387 | 5_3:-22946963 | Msa0805890:CDS |
| GCTCAAACTTACTCTTTCTT+TGG | 0.280898 | 5_3:-22946932 | Msa0805890:CDS |
| TCAGACACTCACATCAAATT+AGG | 0.282058 | 5_3:-22945591 | Msa0805890:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.300774 | 5_3:-22949800 | Msa0805890:intron |
| CCACCATCAGGTCCAAATTC+CGG | 0.313193 | 5_3:-22946980 | Msa0805890:CDS |
| AACCAGTCGTTGTTGGAAAA+TGG | 0.314365 | 5_3:-22946077 | Msa0805890:CDS |
| GAAATAAGCAAGAAGCGTTT+TGG | 0.324616 | 5_3:-22946279 | Msa0805890:CDS |
| ATGTAACACTTGAACAATTT+GGG | 0.340960 | 5_3:+22950600 | None:intergenic |
| CAGAACAATCATTGAAAATT+GGG | 0.343953 | 5_3:+22949106 | None:intergenic |
| CACCATCAGGTCCAAATTCC+GGG | 0.346849 | 5_3:-22946979 | Msa0805890:CDS |
| GCCTCAGATGGAATTCCTCC+TGG | 0.354070 | 5_3:-22949243 | Msa0805890:CDS |
| GAAAGGTTTGGATGGATTGC+TGG | 0.360515 | 5_3:-22945751 | Msa0805890:CDS |
| TTGGCTTAAATGGTGGTTGC+GGG | 0.360622 | 5_3:+22949179 | None:intergenic |
| TGTGGAAGGACATTGGTATT+GGG | 0.363284 | 5_3:-22946907 | Msa0805890:CDS |
| TGAAGGAAAGGACGCTGTTT+GGG | 0.368363 | 5_3:-22945875 | Msa0805890:CDS |
| TGAAGGAAAGGACGCTGTTT+GGG | 0.368363 | 5_3:-22948887 | Msa0805890:CDS |
| TTGAAGGAAAGGACGCTGTT+TGG | 0.369269 | 5_3:-22945876 | Msa0805890:CDS |
| TTGAAGGAAAGGACGCTGTT+TGG | 0.369269 | 5_3:-22948888 | Msa0805890:CDS |
| GACAATGGTTGATTCAAAAC+TGG | 0.371505 | 5_3:+22949668 | None:intergenic |
| AATTCCTTGTGGTTTATTAA+GGG | 0.379479 | 5_3:-22946226 | Msa0805890:CDS |
| TAAGCAGGATGGGAGTATTA+AGG | 0.379785 | 5_3:-22950689 | Msa0805890:intron |
| GAAGGAAGGAATGACATTAA+AGG | 0.380941 | 5_3:-22946034 | Msa0805890:CDS |
| TCACTCAAATGGTAATTTGT+AGG | 0.387265 | 5_3:+22946174 | None:intergenic |
| ACAAAAGTTGAAGAGTTTGA+TGG | 0.392275 | 5_3:-22948718 | Msa0805890:CDS |
| AGAAAATGTTATGTTCCTTC+CGG | 0.393674 | 5_3:-22946822 | Msa0805890:CDS |
| CCTTTGAATCTAAGTTTGCT+TGG | 0.397890 | 5_3:+22946391 | None:intergenic |
| GACAATGGAAAGTTGAAATC+TGG | 0.400529 | 5_3:+22946114 | None:intergenic |
| CTTACTCTTTCTTTGGTTTG+TGG | 0.402118 | 5_3:-22946925 | Msa0805890:CDS |
| CCTTTGAACTTGCACTAGCT+TGG | 0.407926 | 5_3:+22949397 | None:intergenic |
| TTGTGGAAGGACATTGGTAT+TGG | 0.416602 | 5_3:-22946908 | Msa0805890:CDS |
| CGTTCTGAACCAGTCGTTGT+TGG | 0.418054 | 5_3:-22946084 | Msa0805890:CDS |
| GAAAGGTTTGGATGGAATGC+TGG | 0.429285 | 5_3:-22948763 | Msa0805890:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5_3:-22948990 | Msa0805890:CDS |
| CACCATTTAAGCCAAGCTTT+AGG | 0.434225 | 5_3:-22949171 | Msa0805890:CDS |
| GAATGAACATAGCTTCTTCA+TGG | 0.436065 | 5_3:+22949690 | None:intergenic |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5_3:-22945763 | Msa0805890:CDS |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5_3:-22948775 | Msa0805890:CDS |
| AAGCCAAGGCTTCACTCAAA+TGG | 0.444491 | 5_3:+22946163 | None:intergenic |
| GACTGGTTCAGAACGATCAT+TGG | 0.445272 | 5_3:+22946092 | None:intergenic |
| CTCTTTCTTTGGTTTGTGGA+AGG | 0.448953 | 5_3:-22946921 | Msa0805890:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5_3:+22949851 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5_3:-22949860 | Msa0805890:CDS |
| GACTCCTTTCCATGTACAAA+AGG | 0.456814 | 5_3:-22947027 | Msa0805890:CDS |
| AAGTTGTTAAAGGAATGAAA+TGG | 0.456844 | 5_3:-22945780 | Msa0805890:CDS |
| AGTTGACGCTCGAGCAAAGA+TGG | 0.461286 | 5_3:-22945984 | Msa0805890:CDS |
| AGAAGGAAGGGGAAATATCA+AGG | 0.463926 | 5_3:-22949623 | Msa0805890:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5_3:-22948865 | Msa0805890:CDS |
| AGTTGTTAAAGGAATGAAAT+GGG | 0.466263 | 5_3:-22945779 | Msa0805890:CDS |
| TTACCATTTGAGTGAAGCCT+TGG | 0.467858 | 5_3:-22946166 | Msa0805890:CDS |
| AGCACTTGCTGGTAGAGTTA+AGG | 0.471852 | 5_3:+22950566 | None:intergenic |
| TTTGGATGGAATGCTGGGAA+TGG | 0.475064 | 5_3:-22948757 | Msa0805890:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.475186 | 5_3:-22949233 | Msa0805890:CDS |
| AGTTCTTGAAAGCATGGAAA+TGG | 0.475618 | 5_3:-22950635 | Msa0805890:CDS |
| TAGTGCAAGTTCAAAGGAAG+AGG | 0.491990 | 5_3:-22949391 | Msa0805890:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.492208 | 5_3:-22948872 | Msa0805890:CDS |
| CTTTCAGATCCACCACCATC+AGG | 0.493605 | 5_3:-22946992 | Msa0805890:CDS |
| ACAGAAGTAGCTAAGGTTGA+AGG | 0.499493 | 5_3:-22948904 | Msa0805890:intron |
| CCAAGCTAGTGCAAGTTCAA+AGG | 0.501377 | 5_3:-22949397 | Msa0805890:CDS |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.502221 | 5_3:-22948955 | Msa0805890:CDS |
| GAATGAAATGGGAACAAGAA+AGG | 0.502774 | 5_3:-22945768 | Msa0805890:CDS |
| ACACAAGTTGCAAAGGTTGA+AGG | 0.504590 | 5_3:-22945892 | Msa0805890:CDS |
| AAAGAAAATGGATAGAAGAA+TGG | 0.506573 | 5_3:-22945629 | Msa0805890:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.507064 | 5_3:-22949640 | Msa0805890:CDS |
| AGGAACCGCTGCATCGGTAA+AGG | 0.507102 | 5_3:-22950658 | Msa0805890:CDS |
| CTTGGCTTAAATGGTGGTTG+CGG | 0.507449 | 5_3:+22949178 | None:intergenic |
| GCAAAATCAGTTGCCTCAGA+TGG | 0.507539 | 5_3:-22949255 | Msa0805890:CDS |
| AAACTTAGATTCAAAGGAAG+AGG | 0.508991 | 5_3:-22946385 | Msa0805890:CDS |
| ACATCAAATTAGGAGTAAAT+GGG | 0.511504 | 5_3:-22945581 | Msa0805890:CDS |
| TTTGGATGGATTGCTGGGAA+AGG | 0.511828 | 5_3:-22945745 | Msa0805890:CDS |
| AATTTGTTGATAATGATTGA+AGG | 0.512989 | 5_3:+22946302 | None:intergenic |
| AAATGTTTGTTCTGAGGGAA+AGG | 0.513031 | 5_3:+22946878 | None:intergenic |
| GCCGAGTCAGTTGCCTCGGA+TGG | 0.514029 | 5_3:-22946249 | Msa0805890:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5_3:+22949852 | None:intergenic |
| CCAAGCAAACTTAGATTCAA+AGG | 0.515419 | 5_3:-22946391 | Msa0805890:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.515966 | 5_3:-22945860 | Msa0805890:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.517021 | 5_3:-22945759 | Msa0805890:CDS |
| ATCTGGTAGCTTAGAACGCA+AGG | 0.519737 | 5_3:+22946131 | None:intergenic |
| TCATGCCGAGTCAGTTGCCT+CGG | 0.520151 | 5_3:-22946253 | Msa0805890:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.522008 | 5_3:-22949636 | Msa0805890:CDS |
| TTTGGTTTGTGGAAGGACAT+TGG | 0.522019 | 5_3:-22946914 | Msa0805890:CDS |
| CCTCAGATGGAATTCCTCCT+GGG | 0.522046 | 5_3:-22949242 | Msa0805890:CDS |
| ATTTGTTGATAATGATTGAA+GGG | 0.523333 | 5_3:+22946303 | None:intergenic |
| TGATATTAAAACAAGTCCCT+TGG | 0.523624 | 5_3:-22946328 | Msa0805890:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.524181 | 5_3:-22948771 | Msa0805890:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5_3:-22949090 | Msa0805890:CDS |
| GACAATGGTTGATTCAATAC+CGG | 0.528283 | 5_3:+22946803 | None:intergenic |
| CTGAACTGTATAAGCAGGAT+GGG | 0.528682 | 5_3:-22950699 | Msa0805890:intron |
| CAAGGAATCATTTGAAGCCA+AGG | 0.529560 | 5_3:+22946149 | None:intergenic |
| GAATGAAATGGGAACAAGAA+AGG | 0.531154 | 5_3:-22948780 | Msa0805890:CDS |
| TACTATGTTATAAGAAGGAA+GGG | 0.531189 | 5_3:-22949635 | Msa0805890:CDS |
| AATGACATTAAAGGAACAGA+TGG | 0.531283 | 5_3:-22946025 | Msa0805890:CDS |
| GAACATAGCTTCTTCATGGC+GGG | 0.536859 | 5_3:+22949694 | None:intergenic |
| AAAGGTTTGGATGGATTGCT+GGG | 0.537248 | 5_3:-22945750 | Msa0805890:CDS |
| TTATCTTGTGATATTGGATG+AGG | 0.537375 | 5_3:-22949825 | Msa0805890:CDS |
| GGTGGATCTGAAAGAGCAGT+AGG | 0.540507 | 5_3:+22947001 | None:intergenic |
| GAAACTTAGTTGTTATGTGT+TGG | 0.541498 | 5_3:-22945668 | Msa0805890:CDS |
| TGGTTAAATGTTTGTTCTGA+GGG | 0.543646 | 5_3:+22946873 | None:intergenic |
| TCCCTCAGGAACCGCTGCAT+CGG | 0.543864 | 5_3:-22950664 | Msa0805890:CDS |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5_3:+22949137 | None:intergenic |
| AGTAGCTAAGGTTGAAGGAA+AGG | 0.545787 | 5_3:-22948899 | Msa0805890:intron |
| AGTTGTTGAGGGAATGAAAT+GGG | 0.546947 | 5_3:-22948791 | Msa0805890:CDS |
| TACCGATGCAGCGGTTCCTG+AGG | 0.548069 | 5_3:+22950662 | None:intergenic |
| CAATGATTGTTCTGAATCAG+TGG | 0.548989 | 5_3:-22949097 | Msa0805890:CDS |
| TCCATCCGAGGCAACTGACT+CGG | 0.549619 | 5_3:+22946248 | None:intergenic |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5_3:+22949845 | None:intergenic |
| TTGAGTTTGGAAGTTGTTGA+GGG | 0.559577 | 5_3:-22948802 | Msa0805890:CDS |
| AAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5_3:-22948762 | Msa0805890:CDS |
| ACCGATGCAGCGGTTCCTGA+GGG | 0.563348 | 5_3:+22950663 | None:intergenic |
| TAAAGGAGTTCTTGAAAGCA+TGG | 0.563931 | 5_3:-22950641 | Msa0805890:CDS |
| AATCATTTGAGCCTAAAGCT+TGG | 0.566503 | 5_3:+22949160 | None:intergenic |
| TACCCGGAATTTGGACCTGA+TGG | 0.568278 | 5_3:+22946977 | None:intergenic |
| TATTCAAACACAAGTTGCAA+AGG | 0.569586 | 5_3:-22945899 | Msa0805890:CDS |
| GCCTCGGATGGAATTCCTTG+TGG | 0.570357 | 5_3:-22946237 | Msa0805890:CDS |
| ATGGTTAAATGTTTGTTCTG+AGG | 0.571762 | 5_3:+22946872 | None:intergenic |
| ACTGAACTGTATAAGCAGGA+TGG | 0.579852 | 5_3:-22950700 | Msa0805890:intron |
| GGAGTATTAAGGACTCCCTC+AGG | 0.583577 | 5_3:-22950678 | Msa0805890:CDS |
| AGTTTGATGGAACAAATAAG+TGG | 0.584146 | 5_3:-22948705 | Msa0805890:CDS |
| AGTTGCAAAGGTTGAAGGAA+AGG | 0.584505 | 5_3:-22945887 | Msa0805890:CDS |
| CTAAAGCTTGGCTTAAATGG+TGG | 0.584507 | 5_3:+22949172 | None:intergenic |
| CATAGCTTCTTCATGGCGGG+TGG | 0.584589 | 5_3:+22949697 | None:intergenic |
| GAATTTGGACCTGATGGTGG+TGG | 0.585532 | 5_3:+22946983 | None:intergenic |
| ATAATGATTGAAGGGCTCCA+AGG | 0.592883 | 5_3:+22946311 | None:intergenic |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.595211 | 5_3:-22948803 | Msa0805890:CDS |
| CAAATGGTAATTTGTAGGAG+TGG | 0.595709 | 5_3:+22946179 | None:intergenic |
| GTTGACGCTCGAGCAAAGAT+GGG | 0.596375 | 5_3:-22945983 | Msa0805890:CDS |
| TAATGATTGAAGGGCTCCAA+GGG | 0.597144 | 5_3:+22946312 | None:intergenic |
| GAAGGAAGGGGAAATATCAA+GGG | 0.603366 | 5_3:-22949622 | Msa0805890:intron |
| TGGCTTAAATGGTGGTTGCG+GGG | 0.603595 | 5_3:+22949180 | None:intergenic |
| CCCAGGAGGAATTCCATCTG+AGG | 0.605151 | 5_3:+22949242 | None:intergenic |
| TATACCTTCAAAATCACTGA+TGG | 0.605231 | 5_3:+22946853 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5_3:+22949848 | None:intergenic |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.608877 | 5_3:+22949869 | None:intergenic |
| AAGTTGTTGAGGGAATGAAA+TGG | 0.611433 | 5_3:-22948792 | Msa0805890:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5_3:-22948989 | Msa0805890:CDS |
| GATGAAAATAGATTGGCTGA+TGG | 0.614708 | 5_3:-22945853 | Msa0805890:CDS |
| ATCCAATATTACAAGATACC+CGG | 0.620362 | 5_3:+22946961 | None:intergenic |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5_3:-22949083 | Msa0805890:CDS |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5_3:-22949859 | Msa0805890:CDS |
| GAACTCCTTTACCGATGCAG+CGG | 0.637351 | 5_3:+22950653 | None:intergenic |
| GTGGATCTGAAAGAGCAGTA+GGG | 0.648068 | 5_3:+22947002 | None:intergenic |
| ATGGTTGATTCAATACCGGA+AGG | 0.657288 | 5_3:+22946807 | None:intergenic |
| TCAGAACGATCATTGGACAA+TGG | 0.661451 | 5_3:+22946099 | None:intergenic |
| AAAACTACAACAAAAGCATG+TGG | 0.665724 | 5_3:+22949362 | None:intergenic |
| TAGTAGCGATTCGAAGACAA+TGG | 0.670254 | 5_3:+22949653 | None:intergenic |
| TGAACATAGCTTCTTCATGG+CGG | 0.672652 | 5_3:+22949693 | None:intergenic |
| CCGGAATTTGGACCTGATGG+TGG | 0.679033 | 5_3:+22946980 | None:intergenic |
| ACTATGTTATAAGAAGGAAG+GGG | 0.681475 | 5_3:-22949634 | Msa0805890:CDS |
| ACCACAAGGAATTCCATCCG+AGG | 0.692906 | 5_3:+22946236 | None:intergenic |
| AAGGAAAATAGTGGAGAAGG+CGG | 0.707639 | 5_3:-22948952 | Msa0805890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATTATATTTATAA+AGG | - | chr5_3:22945983-22946002 | Msa0805890:CDS | 0.0% |
| !! | AAAAAATTTACTTTAGTAAT+TGG | - | chr5_3:22945587-22945606 | Msa0805890:CDS | 10.0% |
| !! | TTATTATGTATTCTTAATAT+TGG | - | chr5_3:22945850-22945869 | Msa0805890:CDS | 10.0% |
| !! | GAAATTAATTAGTATAAAAA+TGG | + | chr5_3:22946018-22946037 | None:intergenic | 10.0% |
| !!! | TAAAGTTTTATATAATAACA+TGG | + | chr5_3:22946927-22946946 | None:intergenic | 10.0% |
| !! | TATAATTTAATGTAATAGAT+TGG | + | chr5_3:22948731-22948750 | None:intergenic | 10.0% |
| !! | ATATATCAAAATCAATTAAT+TGG | + | chr5_3:22949760-22949779 | None:intergenic | 10.0% |
| !! | CATAAAAACATACTATTTAA+AGG | + | chr5_3:22945691-22945710 | None:intergenic | 15.0% |
| !!! | TAATTAATTTCGAATTTTGA+TGG | - | chr5_3:22946027-22946046 | Msa0805890:CDS | 15.0% |
| !!! | TATTATTTTTACTTAATCTC+TGG | - | chr5_3:22946876-22946895 | Msa0805890:CDS | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | - | chr5_3:22947493-22947512 | Msa0805890:intron | 15.0% |
| !! | AGAAAAACATATAAAAAATG+CGG | + | chr5_3:22948626-22948645 | None:intergenic | 15.0% |
| !! | TTTGAACTTTGAATTTATAT+TGG | + | chr5_3:22948782-22948801 | None:intergenic | 15.0% |
| !! | ATGTAATTAAATATTTGCTT+TGG | + | chr5_3:22949101-22949120 | None:intergenic | 15.0% |
| !! | TCAACTATTGAATTAAAAAA+AGG | - | chr5_3:22949853-22949872 | Msa0805890:CDS | 15.0% |
| !! | GTTTCTATATACTATATATT+TGG | + | chr5_3:22949911-22949930 | None:intergenic | 15.0% |
| !! | TATATAGTATATAGAAACAA+TGG | - | chr5_3:22949913-22949932 | Msa0805890:CDS | 15.0% |
| !!! | AAGTTTTGTATTAAAGAAAA+TGG | - | chr5_3:22951371-22951390 | Msa0805890:intron | 15.0% |
| !! | TTAAGTATAGTATCCTTAAA+AGG | - | chr5_3:22945772-22945791 | Msa0805890:CDS | 20.0% |
| !!! | GTATTTTATTTTGTGTTTCT+AGG | - | chr5_3:22945912-22945931 | Msa0805890:CDS | 20.0% |
| !!! | CAAGTTTTTTTTTTTTGTTC+AGG | + | chr5_3:22946856-22946875 | None:intergenic | 20.0% |
| !! | AAGAAATATGAAGTATATCA+AGG | - | chr5_3:22947002-22947021 | Msa0805890:CDS | 20.0% |
| !! | TGGTAATTAATTAACTTTCA+TGG | - | chr5_3:22947513-22947532 | Msa0805890:intron | 20.0% |
| !! | ATAGATTCATAAAGTAATAG+TGG | - | chr5_3:22947553-22947572 | Msa0805890:intron | 20.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | - | chr5_3:22947727-22947746 | Msa0805890:intron | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | - | chr5_3:22948051-22948070 | Msa0805890:intron | 20.0% |
| !!! | TTTTATTTTGAGTATACAAG+TGG | - | chr5_3:22948598-22948617 | Msa0805890:intron | 20.0% |
| !!! | TTTTGCTTATAATATAGAGA+TGG | - | chr5_3:22948688-22948707 | Msa0805890:CDS | 20.0% |
| !!! | TTGATTCTTTAGTTGTTTTA+AGG | + | chr5_3:22948756-22948775 | None:intergenic | 20.0% |
| !!! | AATTAAATATTTGCTTTGGA+GGG | + | chr5_3:22949097-22949116 | None:intergenic | 20.0% |
| !! | TAATTAAATATTTGCTTTGG+AGG | + | chr5_3:22949098-22949117 | None:intergenic | 20.0% |
| !! | AGAAATTAATGCTTATATAC+AGG | - | chr5_3:22949214-22949233 | Msa0805890:CDS | 20.0% |
| !!! | TACATTGTTTAGAATTGTAA+AGG | + | chr5_3:22949382-22949401 | None:intergenic | 20.0% |
| !!! | GCTAATTTTTGTATAGAATA+TGG | + | chr5_3:22949729-22949748 | None:intergenic | 20.0% |
| !!! | TTTTGATATATCATGAACAT+TGG | - | chr5_3:22949769-22949788 | Msa0805890:intron | 20.0% |
| !! | TGACAGAAAATCTATTAAAA+TGG | - | chr5_3:22949803-22949822 | Msa0805890:CDS | 20.0% |
| !!! | TATATTTGGATGAAGTTTTA+TGG | + | chr5_3:22949897-22949916 | None:intergenic | 20.0% |
| !!! | AATTTTAAATAGAACATGCA+AGG | - | chr5_3:22950363-22950382 | Msa0805890:intron | 20.0% |
| !! | AAATCTTAAAGCACAAAAAA+AGG | + | chr5_3:22950485-22950504 | None:intergenic | 20.0% |
| !!! | ATTTGTTGATAATGATTGAA+GGG | + | chr5_3:22950712-22950731 | None:intergenic | 20.0% |
| !!! | AATTTGTTGATAATGATTGA+AGG | + | chr5_3:22950713-22950732 | None:intergenic | 20.0% |
| !! | AATGTTAAGTTGTTAATGAG+TGG | - | chr5_3:22945646-22945665 | Msa0805890:CDS | 25.0% |
| !!! | TTTTATTTTGTGTTTCTAGG+AGG | - | chr5_3:22945915-22945934 | Msa0805890:CDS | 25.0% |
| ! | ACTTCATTTGTAGTAAAAGA+CGG | - | chr5_3:22946196-22946215 | Msa0805890:CDS | 25.0% |
| ! | ATGTAACACTTGAACAATTT+GGG | + | chr5_3:22946415-22946434 | None:intergenic | 25.0% |
| ! | TATGTAACACTTGAACAATT+TGG | + | chr5_3:22946416-22946435 | None:intergenic | 25.0% |
| !! | TTCAATTGTGTATATTGACT+TGG | + | chr5_3:22946689-22946708 | None:intergenic | 25.0% |
| ! | TTGAACCAATTGAATATTCT+AGG | - | chr5_3:22946704-22946723 | Msa0805890:intron | 25.0% |
| !! | GTTTTCCTAGAATATTCAAT+TGG | + | chr5_3:22946712-22946731 | None:intergenic | 25.0% |
| ! | TAGGAAAACAATATTCCATT+AGG | - | chr5_3:22946723-22946742 | Msa0805890:intron | 25.0% |
| ! | TTGTTCAGGAAAATAATACA+AGG | + | chr5_3:22946842-22946861 | None:intergenic | 25.0% |
| ! | ATGGATAAATCTCATTTGTT+AGG | + | chr5_3:22946908-22946927 | None:intergenic | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | + | chr5_3:22947179-22947198 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | - | chr5_3:22947181-22947200 | Msa0805890:intron | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | - | chr5_3:22947377-22947396 | Msa0805890:intron | 25.0% |
| ! | CAGGTAGAAATAATCAAAAA+AGG | - | chr5_3:22947721-22947740 | Msa0805890:intron | 25.0% |
| ! | AAAATTGGGAAGTTGAAATT+TGG | + | chr5_3:22947895-22947914 | None:intergenic | 25.0% |
| ! | CAGAACAATCATTGAAAATT+GGG | + | chr5_3:22947909-22947928 | None:intergenic | 25.0% |
| ! | TCAGAACAATCATTGAAAAT+TGG | + | chr5_3:22947910-22947929 | None:intergenic | 25.0% |
| !!! | GAGTTTTTTATTGAAGAGAA+TGG | - | chr5_3:22948359-22948378 | Msa0805890:intron | 25.0% |
| !! | TTTTTATTGAAGAGAATGGA+TGG | - | chr5_3:22948363-22948382 | Msa0805890:intron | 25.0% |
| ! | TTATATCAGTGTCTTATCAT+GGG | + | chr5_3:22948841-22948860 | None:intergenic | 25.0% |
| ! | TATCATTTATGATACAACGT+TGG | - | chr5_3:22948918-22948937 | Msa0805890:intron | 25.0% |
| ! | AAAAGTAAGATACGAGTTAA+AGG | - | chr5_3:22949163-22949182 | Msa0805890:CDS | 25.0% |
| !! | TGTGTTGATATGCATATATT+TGG | + | chr5_3:22949485-22949504 | None:intergenic | 25.0% |
| ! | TGAACAATTGTCAATATAGT+CGG | - | chr5_3:22949637-22949656 | Msa0805890:CDS | 25.0% |
| ! | TTTCTATATCAATCAACTGA+TGG | - | chr5_3:22950290-22950309 | Msa0805890:intron | 25.0% |
| !! | TTTTAATATCATGGCCAAAA+TGG | + | chr5_3:22950675-22950694 | None:intergenic | 25.0% |
| ! | AATTCCTTGTGGTTTATTAA+GGG | - | chr5_3:22950786-22950805 | Msa0805890:intron | 25.0% |
| ! | GAAAAATGTTGGATTGAATT+TGG | - | chr5_3:22951209-22951228 | Msa0805890:intron | 25.0% |
| ! | TTGAATTTGGAAGTTGTTAA+AGG | - | chr5_3:22951222-22951241 | Msa0805890:intron | 25.0% |
| ! | AAGTTGTTAAAGGAATGAAA+TGG | - | chr5_3:22951232-22951251 | Msa0805890:intron | 25.0% |
| ! | AGTTGTTAAAGGAATGAAAT+GGG | - | chr5_3:22951233-22951252 | Msa0805890:intron | 25.0% |
| !! | ACAAAAGTTGAAGAGTTTTA+TGG | - | chr5_3:22951306-22951325 | Msa0805890:intron | 25.0% |
| !!! | AGTTTTATGGAACAAACAAA+TGG | - | chr5_3:22951319-22951338 | Msa0805890:intron | 25.0% |
| ! | AAAGAAAATGGATAGAAGAA+TGG | - | chr5_3:22951383-22951402 | Msa0805890:intron | 25.0% |
| ! | ACATCAAATTAGGAGTAAAT+GGG | - | chr5_3:22951431-22951450 | Msa0805890:intron | 25.0% |
| ATAAAATACCCAAAATGCAG+TGG | + | chr5_3:22945901-22945920 | None:intergenic | 30.0% | |
| ! | ACATTTTTCACATTTGTGCA+TGG | + | chr5_3:22946279-22946298 | None:intergenic | 30.0% |
| ATATACTGAACTGTATAAGC+AGG | - | chr5_3:22946308-22946327 | Msa0805890:CDS | 30.0% | |
| ! | ACTAGGATTCTTTTTGTACA+TGG | + | chr5_3:22947129-22947148 | None:intergenic | 30.0% |
| TTATCTTGTGATATTGGATG+AGG | - | chr5_3:22947187-22947206 | Msa0805890:intron | 30.0% | |
| TGGTTAAATTCTTGTTCTGA+GGG | + | chr5_3:22947274-22947293 | None:intergenic | 30.0% | |
| ATGGTTAAATTCTTGTTCTG+AGG | + | chr5_3:22947275-22947294 | None:intergenic | 30.0% | |
| TTAACCATCAAGTATTCATC+AGG | - | chr5_3:22947287-22947306 | Msa0805890:intron | 30.0% | |
| ATCGCTACTATGTTATAAGA+AGG | - | chr5_3:22947372-22947391 | Msa0805890:intron | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | - | chr5_3:22947376-22947395 | Msa0805890:intron | 30.0% | |
| ACTATGTTATAAGAAGGAAG+GGG | - | chr5_3:22947378-22947397 | Msa0805890:intron | 30.0% | |
| ! | AAGTTTTTCTCTCATGTCAA+CGG | - | chr5_3:22947454-22947473 | Msa0805890:intron | 30.0% |
| ! | AAAACTACAACAAAAGCATG+TGG | + | chr5_3:22947653-22947672 | None:intergenic | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | + | chr5_3:22947706-22947725 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | + | chr5_3:22947707-22947726 | None:intergenic | 30.0% |
| GAAAAAAAGGTGGAAACTTA+AGG | - | chr5_3:22947801-22947820 | Msa0805890:intron | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | - | chr5_3:22947954-22947973 | Msa0805890:intron | 30.0% | |
| GAAGGAGAGAATGAATTTAA+AGG | - | chr5_3:22947972-22947991 | Msa0805890:intron | 30.0% | |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | - | chr5_3:22948041-22948060 | Msa0805890:intron | 30.0% |
| TATTCAAACAGAAGTAGCTA+AGG | - | chr5_3:22948101-22948120 | Msa0805890:intron | 30.0% | |
| ! | TGTTTGGGATGAAAATAGAT+TGG | - | chr5_3:22948140-22948159 | Msa0805890:intron | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | - | chr5_3:22948147-22948166 | Msa0805890:intron | 30.0% |
| !! | AGTGTTGATGAGAAAAATGT+TGG | - | chr5_3:22948186-22948205 | Msa0805890:intron | 30.0% |
| GAAAAATGTTGGATTGAGTT+TGG | - | chr5_3:22948197-22948216 | Msa0805890:intron | 30.0% | |
| ACAAAAGTTGAAGAGTTTGA+TGG | - | chr5_3:22948294-22948313 | Msa0805890:intron | 30.0% | |
| AGTTTGATGGAACAAATAAG+TGG | - | chr5_3:22948307-22948326 | Msa0805890:intron | 30.0% | |
| ACATCAAATTAGGAGCAAAT+GGG | - | chr5_3:22948419-22948438 | Msa0805890:intron | 30.0% | |
| ATAAAAGAGCTAAAATGTGC+TGG | + | chr5_3:22948584-22948603 | None:intergenic | 30.0% | |
| TGCTTATAATATAGAGATGG+AGG | - | chr5_3:22948691-22948710 | Msa0805890:CDS | 30.0% | |
| CTTATATCAGTGTCTTATCA+TGG | + | chr5_3:22948842-22948861 | None:intergenic | 30.0% | |
| ! | TAACGTGGAAACTTTAAAAG+CGG | - | chr5_3:22948962-22948981 | Msa0805890:CDS | 30.0% |
| !!! | CGAGTTAAAGGTATTTTTGA+CGG | - | chr5_3:22949175-22949194 | Msa0805890:CDS | 30.0% |
| !!! | GAGTTAAAGGTATTTTTGAC+GGG | - | chr5_3:22949176-22949195 | Msa0805890:CDS | 30.0% |
| CACTTCAAAAAACAACATTG+TGG | - | chr5_3:22949256-22949275 | Msa0805890:CDS | 30.0% | |
| ! | GTTTAGAATTGTAAAGGAAG+AGG | + | chr5_3:22949376-22949395 | None:intergenic | 30.0% |
| TTCTCTTATTACTTTACGCT+TGG | - | chr5_3:22949520-22949539 | Msa0805890:intron | 30.0% | |
| TTTAATTGATGTCATATGCC+AGG | + | chr5_3:22949691-22949710 | None:intergenic | 30.0% | |
| ATCCAATATTACAAGATACC+CGG | + | chr5_3:22950054-22950073 | None:intergenic | 30.0% | |
| TGGTTAAATGTTTGTTCTGA+GGG | + | chr5_3:22950142-22950161 | None:intergenic | 30.0% | |
| ATGGTTAAATGTTTGTTCTG+AGG | + | chr5_3:22950143-22950162 | None:intergenic | 30.0% | |
| ! | TTAACCATCAGTGATTTTGA+AGG | - | chr5_3:22950155-22950174 | Msa0805890:intron | 30.0% |
| TATACCTTCAAAATCACTGA+TGG | + | chr5_3:22950162-22950181 | None:intergenic | 30.0% | |
| ! | GGAACATAACATTTTCTCTT+TGG | + | chr5_3:22950187-22950206 | None:intergenic | 30.0% |
| AGAAAATGTTATGTTCCTTC+CGG | - | chr5_3:22950190-22950209 | Msa0805890:intron | 30.0% | |
| TCCTTCTTATGACATGATAA+CGG | + | chr5_3:22950241-22950260 | None:intergenic | 30.0% | |
| TTATCATGTCATAAGAAGGA+AGG | - | chr5_3:22950241-22950260 | Msa0805890:intron | 30.0% | |
| TATCATGTCATAAGAAGGAA+GGG | - | chr5_3:22950242-22950261 | Msa0805890:intron | 30.0% | |
| AAACTTAGATTCAAAGGAAG+AGG | - | chr5_3:22950627-22950646 | Msa0805890:CDS | 30.0% | |
| !!! | AGGGACTTGTTTTAATATCA+TGG | + | chr5_3:22950684-22950703 | None:intergenic | 30.0% |
| TGATATTAAAACAAGTCCCT+TGG | - | chr5_3:22950684-22950703 | Msa0805890:CDS | 30.0% | |
| GAATTCCTTGTGGTTTATTA+AGG | - | chr5_3:22950785-22950804 | Msa0805890:intron | 30.0% | |
| ! | TTTTCCCTTAATAAACCACA+AGG | + | chr5_3:22950793-22950812 | None:intergenic | 30.0% |
| GTTTATTAAGGGAAAAAGTG+TGG | - | chr5_3:22950797-22950816 | Msa0805890:intron | 30.0% | |
| !! | GAAAAAGTGTGGACAATTTT+TGG | - | chr5_3:22950808-22950827 | Msa0805890:intron | 30.0% |
| ! | TCACTCAAATGGTAATTTGT+AGG | + | chr5_3:22950841-22950860 | None:intergenic | 30.0% |
| ! | TTGTCCTTTTATGTTTGTGA+AGG | - | chr5_3:22950960-22950979 | Msa0805890:intron | 30.0% |
| AATGACATTAAAGGAACAGA+TGG | - | chr5_3:22950987-22951006 | Msa0805890:intron | 30.0% | |
| TATTCAAACACAAGTTGCAA+AGG | - | chr5_3:22951113-22951132 | Msa0805890:intron | 30.0% | |
| ! | TGTTTGGGATGAAAATAGAT+TGG | - | chr5_3:22948140-22948159 | Msa0805890:intron | 30.0% |
| ! | AGTGTTGAAGAGAAAAATGT+TGG | - | chr5_3:22951198-22951217 | Msa0805890:intron | 30.0% |
| GAAACTTAGTTGTTATGTGT+TGG | - | chr5_3:22951344-22951363 | Msa0805890:intron | 30.0% | |
| CACATCAAATTAGGAGTAAA+TGG | - | chr5_3:22951430-22951449 | Msa0805890:intron | 30.0% | |
| !!! | TATTTTGTGTTTCTAGGAGG+AGG | - | chr5_3:22945918-22945937 | Msa0805890:CDS | 35.0% |
| GAATTTGAGTGATGAAACCA+TGG | + | chr5_3:22946103-22946122 | None:intergenic | 35.0% | |
| ! | TTTTTCACATTTGTGCATGG+CGG | + | chr5_3:22946276-22946295 | None:intergenic | 35.0% |
| TAAAGGAGTTCTTGAAAGCA+TGG | - | chr5_3:22946371-22946390 | Msa0805890:CDS | 35.0% | |
| ! | AGTTCTTGAAAGCATGGAAA+TGG | - | chr5_3:22946377-22946396 | Msa0805890:CDS | 35.0% |
| AAGTGCTTATGACTTCAACT+GGG | - | chr5_3:22946462-22946481 | Msa0805890:intron | 35.0% | |
| ATAGATGAACAAGCCATCAA+TGG | + | chr5_3:22946498-22946517 | None:intergenic | 35.0% | |
| !! | TTGATGGCTTGTTCATCTAT+TGG | - | chr5_3:22946498-22946517 | Msa0805890:intron | 35.0% |
| !! | GGATTCAACTTGTTGAGAAA+AGG | - | chr5_3:22946663-22946682 | Msa0805890:intron | 35.0% |
| CTACTATCATTCTTGCCTAA+TGG | + | chr5_3:22946741-22946760 | None:intergenic | 35.0% | |
| GAATGATAGTAGTATGTACG+TGG | - | chr5_3:22946749-22946768 | Msa0805890:intron | 35.0% | |
| ATGTTTGCAAATTGACGTAC+AGG | - | chr5_3:22946977-22946996 | Msa0805890:CDS | 35.0% | |
| !! | GCTCAAACTTACTCTTGTTT+TGG | - | chr5_3:22947212-22947231 | Msa0805890:intron | 35.0% |
| !! | AAATTCTTGTTCTGAGGGAT+AGG | + | chr5_3:22947269-22947288 | None:intergenic | 35.0% |
| TTCACCTGATGAATACTTGA+TGG | + | chr5_3:22947294-22947313 | None:intergenic | 35.0% | |
| GAATGAACATAGCTTCTTCA+TGG | + | chr5_3:22947325-22947344 | None:intergenic | 35.0% | |
| ! | GACAATGGTTGATTCAAAAC+TGG | + | chr5_3:22947347-22947366 | None:intergenic | 35.0% |
| !!! | CTTTTTTTCCTCAATAACCC+AGG | + | chr5_3:22947790-22947809 | None:intergenic | 35.0% |
| CTGGGTTATTGAGGAAAAAA+AGG | - | chr5_3:22947788-22947807 | Msa0805890:intron | 35.0% | |
| GGTTATTGAGGAAAAAAAGG+TGG | - | chr5_3:22947791-22947810 | Msa0805890:intron | 35.0% | |
| AATCATTTGAGCCTAAAGCT+TGG | + | chr5_3:22947855-22947874 | None:intergenic | 35.0% | |
| ! | CAATGATTGTTCTGAATCAG+TGG | - | chr5_3:22947915-22947934 | Msa0805890:intron | 35.0% |
| CTCTCCTTCACAAACATAAA+TGG | + | chr5_3:22947961-22947980 | None:intergenic | 35.0% | |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | - | chr5_3:22948057-22948076 | Msa0805890:intron | 35.0% |
| ATTGAGTTTGGAAGTTGTTG+AGG | - | chr5_3:22948209-22948228 | Msa0805890:intron | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+GGG | - | chr5_3:22948210-22948229 | Msa0805890:intron | 35.0% | |
| AAGTTGTTGAGGGAATGAAA+TGG | - | chr5_3:22948220-22948239 | Msa0805890:intron | 35.0% | |
| AGTTGTTGAGGGAATGAAAT+GGG | - | chr5_3:22948221-22948240 | Msa0805890:intron | 35.0% | |
| GAATGAAATGGGAACAAGAA+AGG | - | chr5_3:22948232-22948251 | Msa0805890:intron | 35.0% | |
| AAATGGGAACAAGAAAGGTT+TGG | - | chr5_3:22948237-22948256 | Msa0805890:intron | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | - | chr5_3:22948409-22948428 | Msa0805890:intron | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | - | chr5_3:22948418-22948437 | Msa0805890:intron | 35.0% | |
| ! | ATATAGAGATGGAGGCATAA+TGG | - | chr5_3:22948699-22948718 | Msa0805890:CDS | 35.0% |
| ! | TATAGAGATGGAGGCATAAT+GGG | - | chr5_3:22948700-22948719 | Msa0805890:CDS | 35.0% |
| TATTGCACAATAGCATTCAC+TGG | - | chr5_3:22948881-22948900 | Msa0805890:CDS | 35.0% | |
| ATTGCACAATAGCATTCACT+GGG | - | chr5_3:22948882-22948901 | Msa0805890:CDS | 35.0% | |
| TGCAACATAAGAACATAACG+TGG | - | chr5_3:22948947-22948966 | Msa0805890:CDS | 35.0% | |
| ! | AACGTGGAAACTTTAAAAGC+GGG | - | chr5_3:22948963-22948982 | Msa0805890:CDS | 35.0% |
| ! | TCTTGCATGACAAGTATTGT+AGG | + | chr5_3:22949282-22949301 | None:intergenic | 35.0% |
| CAATACTTGTCATGCAAGAA+AGG | - | chr5_3:22949283-22949302 | Msa0805890:CDS | 35.0% | |
| ! | TTGAAGTGCTAAGACAAGTA+AGG | + | chr5_3:22949327-22949346 | None:intergenic | 35.0% |
| AGGACCAAGTCAATTGATAA+TGG | - | chr5_3:22949554-22949573 | Msa0805890:intron | 35.0% | |
| TACGCCATTATCAATTGACT+TGG | + | chr5_3:22949561-22949580 | None:intergenic | 35.0% | |
| TCATACATAGTCTAATCACG+AGG | - | chr5_3:22949945-22949964 | Msa0805890:intron | 35.0% | |
| CATACATAGTCTAATCACGA+GGG | - | chr5_3:22949946-22949965 | Msa0805890:intron | 35.0% | |
| ATTACAAGATACCCGGAATT+TGG | + | chr5_3:22950047-22950066 | None:intergenic | 35.0% | |
| TTCCGGGTATCTTGTAATAT+TGG | - | chr5_3:22950049-22950068 | Msa0805890:intron | 35.0% | |
| GCTCAAACTTACTCTTTCTT+TGG | - | chr5_3:22950080-22950099 | Msa0805890:intron | 35.0% | |
| !! | CTTACTCTTTCTTTGGTTTG+TGG | - | chr5_3:22950087-22950106 | Msa0805890:intron | 35.0% |
| !! | AAATGTTTGTTCTGAGGGAA+AGG | + | chr5_3:22950137-22950156 | None:intergenic | 35.0% |
| ! | GACAATGGTTGATTCAATAC+CGG | + | chr5_3:22950212-22950231 | None:intergenic | 35.0% |
| ACCGTTATCATGTCATAAGA+AGG | - | chr5_3:22950237-22950256 | Msa0805890:intron | 35.0% | |
| !!! | TGATGGTTTTAATTCCGTGT+AGG | - | chr5_3:22950307-22950326 | Msa0805890:intron | 35.0% |
| ! | CCTTTGAATCTAAGTTTGCT+TGG | + | chr5_3:22950624-22950643 | None:intergenic | 35.0% |
| CCAAGCAAACTTAGATTCAA+AGG | - | chr5_3:22950621-22950640 | Msa0805890:CDS | 35.0% | |
| !!! | GAAATAAGCAAGAAGCGTTT+TGG | - | chr5_3:22950733-22950752 | Msa0805890:intron | 35.0% |
| ! | CAAATGGTAATTTGTAGGAG+TGG | + | chr5_3:22950836-22950855 | None:intergenic | 35.0% |
| GACAATGGAAAGTTGAAATC+TGG | + | chr5_3:22950901-22950920 | None:intergenic | 35.0% | |
| CCTTCCTTCACAAACATAAA+AGG | + | chr5_3:22950967-22950986 | None:intergenic | 35.0% | |
| ! | CCTTTTATGTTTGTGAAGGA+AGG | - | chr5_3:22950964-22950983 | Msa0805890:intron | 35.0% |
| GAAGGAAGGAATGACATTAA+AGG | - | chr5_3:22950978-22950997 | Msa0805890:intron | 35.0% | |
| ! | GATGAAAATAGATTGGCTGA+TGG | - | chr5_3:22951159-22951178 | Msa0805890:intron | 35.0% |
| GAATGAAATGGGAACAAGAA+AGG | - | chr5_3:22948232-22948251 | Msa0805890:intron | 35.0% | |
| AAATGGGAACAAGAAAGGTT+TGG | - | chr5_3:22948237-22948256 | Msa0805890:intron | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | - | chr5_3:22948409-22948428 | Msa0805890:intron | 35.0% | |
| AAAGGCCTTCAATAGTGTCA+CGG | + | chr5_3:22945673-22945692 | None:intergenic | 40.0% | |
| !!! | TGTCTTTGGGACACCTTTTA+AGG | + | chr5_3:22945788-22945807 | None:intergenic | 40.0% |
| AACGACTGTCTCTTGTCTTT+GGG | + | chr5_3:22945801-22945820 | None:intergenic | 40.0% | |
| TAACGACTGTCTCTTGTCTT+TGG | + | chr5_3:22945802-22945821 | None:intergenic | 40.0% | |
| ACAAGAGACAGTCGTTAACA+AGG | - | chr5_3:22945805-22945824 | Msa0805890:CDS | 40.0% | |
| CAAGAGACAGTCGTTAACAA+GGG | - | chr5_3:22945806-22945825 | Msa0805890:CDS | 40.0% | |
| GTGTAATCACTAATCAGCCA+TGG | - | chr5_3:22946083-22946102 | Msa0805890:CDS | 40.0% | |
| ACTGAACTGTATAAGCAGGA+TGG | - | chr5_3:22946312-22946331 | Msa0805890:CDS | 40.0% | |
| CTGAACTGTATAAGCAGGAT+GGG | - | chr5_3:22946313-22946332 | Msa0805890:CDS | 40.0% | |
| !! | TAAGCAGGATGGGAGTATTA+AGG | - | chr5_3:22946323-22946342 | Msa0805890:CDS | 40.0% |
| TTGAAGTCATAAGCACTTGC+TGG | + | chr5_3:22946460-22946479 | None:intergenic | 40.0% | |
| CAAGTGCTTATGACTTCAAC+TGG | - | chr5_3:22946461-22946480 | Msa0805890:intron | 40.0% | |
| !! | GTGTCAGTAGCTTTGTTTCA+TGG | - | chr5_3:22946520-22946539 | Msa0805890:intron | 40.0% |
| CGCGTTTGACTATTCATAAC+GGG | + | chr5_3:22946802-22946821 | None:intergenic | 40.0% | |
| CCGCGTTTGACTATTCATAA+CGG | + | chr5_3:22946803-22946822 | None:intergenic | 40.0% | |
| CCGTTATGAATAGTCAAACG+CGG | - | chr5_3:22946800-22946819 | Msa0805890:intron | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | + | chr5_3:22947170-22947189 | None:intergenic | 40.0% | |
| !!! | CTCTTGTTTTGGTTTGTGCA+AGG | - | chr5_3:22947223-22947242 | Msa0805890:intron | 40.0% |
| TGAACATAGCTTCTTCATGG+CGG | + | chr5_3:22947322-22947341 | None:intergenic | 40.0% | |
| TAGTAGCGATTCGAAGACAA+TGG | + | chr5_3:22947362-22947381 | None:intergenic | 40.0% | |
| AGAAGGAAGGGGAAATATCA+AGG | - | chr5_3:22947389-22947408 | Msa0805890:intron | 40.0% | |
| GAAGGAAGGGGAAATATCAA+GGG | - | chr5_3:22947390-22947409 | Msa0805890:intron | 40.0% | |
| TAGTGCAAGTTCAAAGGAAG+AGG | - | chr5_3:22947621-22947640 | Msa0805890:intron | 40.0% | |
| !! | TTGAAGGGCTCTAAAGCTAT+TGG | + | chr5_3:22947691-22947710 | None:intergenic | 40.0% |
| GCCCTTCAATGATTATCAAC+AGG | - | chr5_3:22947702-22947721 | Msa0805890:intron | 40.0% | |
| ! | TTTTTCCTCAATAACCCAGG+AGG | + | chr5_3:22947787-22947806 | None:intergenic | 40.0% |
| CTAAAGCTTGGCTTAAATGG+TGG | + | chr5_3:22947843-22947862 | None:intergenic | 40.0% | |
| CACCATTTAAGCCAAGCTTT+AGG | - | chr5_3:22947841-22947860 | Msa0805890:intron | 40.0% | |
| AGCCTAAAGCTTGGCTTAAA+TGG | + | chr5_3:22947846-22947865 | None:intergenic | 40.0% | |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | - | chr5_3:22947922-22947941 | Msa0805890:intron | 40.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | - | chr5_3:22947929-22947948 | Msa0805890:intron | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | - | chr5_3:22948022-22948041 | Msa0805890:intron | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | - | chr5_3:22948023-22948042 | Msa0805890:intron | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+CGG | - | chr5_3:22948060-22948079 | Msa0805890:intron | 40.0% |
| ACAGAAGTAGCTAAGGTTGA+AGG | - | chr5_3:22948108-22948127 | Msa0805890:intron | 40.0% | |
| AGTAGCTAAGGTTGAAGGAA+AGG | - | chr5_3:22948113-22948132 | Msa0805890:intron | 40.0% | |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | - | chr5_3:22948157-22948176 | Msa0805890:intron | 40.0% |
| AAAGGTTTGGATGGAATGCT+GGG | - | chr5_3:22948250-22948269 | Msa0805890:intron | 40.0% | |
| ! | ACGTGGAAACTTTAAAAGCG+GGG | - | chr5_3:22948964-22948983 | Msa0805890:CDS | 40.0% |
| !! | ATATTTGCTTTGGAGGGTGT+GGG | + | chr5_3:22949091-22949110 | None:intergenic | 40.0% |
| !! | AATATTTGCTTTGGAGGGTG+TGG | + | chr5_3:22949092-22949111 | None:intergenic | 40.0% |
| AAGTGCTAAGACAAGTAAGG+TGG | + | chr5_3:22949324-22949343 | None:intergenic | 40.0% | |
| ! | TACGCTTGGCTTCTAAAGAA+AGG | - | chr5_3:22949534-22949553 | Msa0805890:intron | 40.0% |
| ACCTAGTATTTGTCACTACC+TGG | - | chr5_3:22949670-22949689 | Msa0805890:CDS | 40.0% | |
| GACTCCTTTCCATGTACAAA+AGG | - | chr5_3:22949985-22950004 | Msa0805890:intron | 40.0% | |
| ! | GGTTCCTTTTGTACATGGAA+AGG | + | chr5_3:22949992-22950011 | None:intergenic | 40.0% |
| ! | AGTAGGGTTCCTTTTGTACA+TGG | + | chr5_3:22949997-22950016 | None:intergenic | 40.0% |
| !! | CTCTTTCTTTGGTTTGTGGA+AGG | - | chr5_3:22950091-22950110 | Msa0805890:intron | 40.0% |
| !! | TTTGGTTTGTGGAAGGACAT+TGG | - | chr5_3:22950098-22950117 | Msa0805890:intron | 40.0% |
| TTGTGGAAGGACATTGGTAT+TGG | - | chr5_3:22950104-22950123 | Msa0805890:intron | 40.0% | |
| TGTGGAAGGACATTGGTATT+GGG | - | chr5_3:22950105-22950124 | Msa0805890:intron | 40.0% | |
| ! | ATGGTTGATTCAATACCGGA+AGG | + | chr5_3:22950208-22950227 | None:intergenic | 40.0% |
| !! | TGATAACGGTTCGAAGACAA+TGG | + | chr5_3:22950227-22950246 | None:intergenic | 40.0% |
| AGAAGGAAGGGAAAGAATCA+AGG | - | chr5_3:22950254-22950273 | Msa0805890:intron | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | - | chr5_3:22950255-22950274 | Msa0805890:intron | 40.0% | |
| ! | TGAATCTAAGTTTGCTTGGC+TGG | + | chr5_3:22950620-22950639 | None:intergenic | 40.0% |
| !! | ACTAGTGTATGCTGCCATTT+TGG | - | chr5_3:22950658-22950677 | Msa0805890:CDS | 40.0% |
| TAATGATTGAAGGGCTCCAA+GGG | + | chr5_3:22950703-22950722 | None:intergenic | 40.0% | |
| ATAATGATTGAAGGGCTCCA+AGG | + | chr5_3:22950704-22950723 | None:intergenic | 40.0% | |
| TTACCATTTGAGTGAAGCCT+TGG | - | chr5_3:22950846-22950865 | Msa0805890:intron | 40.0% | |
| ! | CAAGGAATCATTTGAAGCCA+AGG | + | chr5_3:22950866-22950885 | None:intergenic | 40.0% |
| TCAGAACGATCATTGGACAA+TGG | + | chr5_3:22950916-22950935 | None:intergenic | 40.0% | |
| AACCAGTCGTTGTTGGAAAA+TGG | - | chr5_3:22950935-22950954 | Msa0805890:intron | 40.0% | |
| ! | TACCATTTTCCAACAACGAC+TGG | + | chr5_3:22950940-22950959 | None:intergenic | 40.0% |
| ACACAAGTTGCAAAGGTTGA+AGG | - | chr5_3:22951120-22951139 | Msa0805890:intron | 40.0% | |
| AGTTGCAAAGGTTGAAGGAA+AGG | - | chr5_3:22951125-22951144 | Msa0805890:intron | 40.0% | |
| !! | AAAGGTTTGGATGGATTGCT+GGG | - | chr5_3:22951262-22951281 | Msa0805890:intron | 40.0% |
| ! | TGATGTGAGCCACTGCATTT+TGG | - | chr5_3:22945889-22945908 | Msa0805890:CDS | 45.0% |
| ! | GATGTGAGCCACTGCATTTT+GGG | - | chr5_3:22945890-22945909 | Msa0805890:CDS | 45.0% |
| ! | AGCACTTGCTGGTAGAGTTA+AGG | + | chr5_3:22946449-22946468 | None:intergenic | 45.0% |
| TGAACAAGCCATCAATGGCA+GGG | + | chr5_3:22946493-22946512 | None:intergenic | 45.0% | |
| ATGAACAAGCCATCAATGGC+AGG | + | chr5_3:22946494-22946513 | None:intergenic | 45.0% | |
| GAACATAGCTTCTTCATGGC+GGG | + | chr5_3:22947321-22947340 | None:intergenic | 45.0% | |
| CCTTTGAACTTGCACTAGCT+TGG | + | chr5_3:22947618-22947637 | None:intergenic | 45.0% | |
| CCAAGCTAGTGCAAGTTCAA+AGG | - | chr5_3:22947615-22947634 | Msa0805890:intron | 45.0% | |
| GCAAAATCAGTTGCCTCAGA+TGG | - | chr5_3:22947757-22947776 | Msa0805890:intron | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | - | chr5_3:22947779-22947798 | Msa0805890:intron | 45.0% | |
| TTGGCTTAAATGGTGGTTGC+GGG | + | chr5_3:22947836-22947855 | None:intergenic | 45.0% | |
| CTTGGCTTAAATGGTGGTTG+CGG | + | chr5_3:22947837-22947856 | None:intergenic | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | + | chr5_3:22947878-22947897 | None:intergenic | 45.0% |
| TTGAAGGAAAGGACGCTGTT+TGG | - | chr5_3:22948124-22948143 | Msa0805890:intron | 45.0% | |
| TGAAGGAAAGGACGCTGTTT+GGG | - | chr5_3:22948125-22948144 | Msa0805890:intron | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | - | chr5_3:22948241-22948260 | Msa0805890:intron | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | - | chr5_3:22948249-22948268 | Msa0805890:intron | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | - | chr5_3:22948255-22948274 | Msa0805890:intron | 45.0% | |
| GGGAGTGGTTTACATGTACA+AGG | + | chr5_3:22948821-22948840 | None:intergenic | 45.0% | |
| TCAGTGTCTTATCATGGGAG+TGG | + | chr5_3:22948836-22948855 | None:intergenic | 45.0% | |
| GACTACTCTCAAATACCCAC+CGG | - | chr5_3:22949055-22949074 | Msa0805890:intron | 45.0% | |
| CCAACATCGACAGTTAAGCA+CGG | - | chr5_3:22949456-22949475 | Msa0805890:intron | 45.0% | |
| GCCAGGTAGTGACAAATACT+AGG | + | chr5_3:22949674-22949693 | None:intergenic | 45.0% | |
| GTGGATCTGAAAGAGCAGTA+GGG | + | chr5_3:22950013-22950032 | None:intergenic | 45.0% | |
| AAGCCAAGGCTTCACTCAAA+TGG | + | chr5_3:22950852-22950871 | None:intergenic | 45.0% | |
| ATCTGGTAGCTTAGAACGCA+AGG | + | chr5_3:22950884-22950903 | None:intergenic | 45.0% | |
| ! | GACTGGTTCAGAACGATCAT+TGG | + | chr5_3:22950923-22950942 | None:intergenic | 45.0% |
| TTGAAGGAAAGGACGCTGTT+TGG | - | chr5_3:22948124-22948143 | Msa0805890:intron | 45.0% | |
| TGAAGGAAAGGACGCTGTTT+GGG | - | chr5_3:22948125-22948144 | Msa0805890:intron | 45.0% | |
| !! | GATTGGCTGATGGAGTTTTG+TGG | - | chr5_3:22951169-22951188 | Msa0805890:intron | 45.0% |
| GGGAACAAGAAAGGTTTGGA+TGG | - | chr5_3:22948241-22948260 | Msa0805890:intron | 45.0% | |
| !! | GAAAGGTTTGGATGGATTGC+TGG | - | chr5_3:22951261-22951280 | Msa0805890:intron | 45.0% |
| !! | TTTGGATGGATTGCTGGGAA+AGG | - | chr5_3:22951267-22951286 | Msa0805890:intron | 45.0% |
| !! | AAATTAATTAGTATAAAAAT+GGG | + | chr5_3:22946017-22946036 | None:intergenic | 5.0% |
| GTGGTCCGTGACACTATTGA+AGG | - | chr5_3:22945665-22945684 | Msa0805890:CDS | 50.0% | |
| ! | GGAGTATTAAGGACTCCCTC+AGG | - | chr5_3:22946334-22946353 | Msa0805890:CDS | 50.0% |
| GAACTCCTTTACCGATGCAG+CGG | + | chr5_3:22946362-22946381 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAAG+CGG | - | chr5_3:22946642-22946661 | Msa0805890:intron | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | - | chr5_3:22947153-22947172 | Msa0805890:intron | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | + | chr5_3:22947163-22947182 | None:intergenic | 50.0% |
| CTTGAATTTGGCCCTGATGG+TGG | + | chr5_3:22947167-22947186 | None:intergenic | 50.0% | |
| CCTCAGATGGAATTCCTCCT+GGG | - | chr5_3:22947770-22947789 | Msa0805890:intron | 50.0% | |
| TGGCTTAAATGGTGGTTGCG+GGG | + | chr5_3:22947835-22947854 | None:intergenic | 50.0% | |
| CCGTGCTTAACTGTCGATGT+TGG | + | chr5_3:22949459-22949478 | None:intergenic | 50.0% | |
| GGTGGATCTGAAAGAGCAGT+AGG | + | chr5_3:22950014-22950033 | None:intergenic | 50.0% | |
| CTTTCAGATCCACCACCATC+AGG | - | chr5_3:22950020-22950039 | Msa0805890:intron | 50.0% | |
| !! | GAATTTGGACCTGATGGTGG+TGG | + | chr5_3:22950032-22950051 | None:intergenic | 50.0% |
| CCACCATCAGGTCCAAATTC+CGG | - | chr5_3:22950032-22950051 | Msa0805890:intron | 50.0% | |
| CACCATCAGGTCCAAATTCC+GGG | - | chr5_3:22950033-22950052 | Msa0805890:intron | 50.0% | |
| TACCCGGAATTTGGACCTGA+TGG | + | chr5_3:22950038-22950057 | None:intergenic | 50.0% | |
| ACCACAAGGAATTCCATCCG+AGG | + | chr5_3:22950779-22950798 | None:intergenic | 50.0% | |
| ! | CGTTCTGAACCAGTCGTTGT+TGG | - | chr5_3:22950928-22950947 | Msa0805890:intron | 50.0% |
| AGTTGACGCTCGAGCAAAGA+TGG | - | chr5_3:22951028-22951047 | Msa0805890:intron | 50.0% | |
| GTTGACGCTCGAGCAAAGAT+GGG | - | chr5_3:22951029-22951048 | Msa0805890:intron | 50.0% | |
| ! | AGGAACCGCTGCATCGGTAA+AGG | - | chr5_3:22946354-22946373 | Msa0805890:CDS | 55.0% |
| GGGTCTTTCCCTGCCATTGA+TGG | - | chr5_3:22946482-22946501 | Msa0805890:intron | 55.0% | |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | + | chr5_3:22947146-22947165 | None:intergenic | 55.0% |
| CTTTCAGACCCACCACCATC+AGG | - | chr5_3:22947152-22947171 | Msa0805890:intron | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | + | chr5_3:22947164-22947183 | None:intergenic | 55.0% |
| ! | CATAGCTTCTTCATGGCGGG+TGG | + | chr5_3:22947318-22947337 | None:intergenic | 55.0% |
| GCCTCAGATGGAATTCCTCC+TGG | - | chr5_3:22947769-22947788 | Msa0805890:intron | 55.0% | |
| CCCAGGAGGAATTCCATCTG+AGG | + | chr5_3:22947773-22947792 | None:intergenic | 55.0% | |
| CCGGAATTTGGACCTGATGG+TGG | + | chr5_3:22950035-22950054 | None:intergenic | 55.0% | |
| TTCCGTGTAGGTAGCTCAGC+TGG | - | chr5_3:22950319-22950338 | Msa0805890:intron | 55.0% | |
| CACCAGCTGAGCTACCTACA+CGG | + | chr5_3:22950324-22950343 | None:intergenic | 55.0% | |
| TCATGCCGAGTCAGTTGCCT+CGG | - | chr5_3:22950759-22950778 | Msa0805890:intron | 55.0% | |
| TCCATCCGAGGCAACTGACT+CGG | + | chr5_3:22950767-22950786 | None:intergenic | 55.0% | |
| GCCTCGGATGGAATTCCTTG+TGG | - | chr5_3:22950775-22950794 | Msa0805890:intron | 55.0% | |
| TCCCTCAGGAACCGCTGCAT+CGG | - | chr5_3:22946348-22946367 | Msa0805890:CDS | 60.0% | |
| ACCGATGCAGCGGTTCCTGA+GGG | + | chr5_3:22946352-22946371 | None:intergenic | 60.0% | |
| TACCGATGCAGCGGTTCCTG+AGG | + | chr5_3:22946353-22946372 | None:intergenic | 60.0% | |
| ! | TTTGGAGGGTGTGGGTGCAC+TGG | + | chr5_3:22949083-22949102 | None:intergenic | 60.0% |
| GCCGAGTCAGTTGCCTCGGA+TGG | - | chr5_3:22950763-22950782 | Msa0805890:intron | 65.0% | |
| GTGGGTGCACTGGAGCCGGT+GGG | + | chr5_3:22949073-22949092 | None:intergenic | 70.0% | |
| TGTGGGTGCACTGGAGCCGG+TGG | + | chr5_3:22949074-22949093 | None:intergenic | 70.0% | |
| GGGTGTGGGTGCACTGGAGC+CGG | + | chr5_3:22949077-22949096 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 22945576 | 22951458 | 22945576 | ID=Msa0805890;Name=Msa0805890 |
| chr5_3 | mRNA | 22945576 | 22951458 | 22945576 | ID=Msa0805890-mRNA-1;Parent=Msa0805890;Name=Msa0805890-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0.11|0|1|0.22|0.1|10|0|724 |
| chr5_3 | exon | 22951433 | 22951458 | 22951433 | ID=Msa0805890-mRNA-1:exon:9139;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22950571 | 22950707 | 22950571 | ID=Msa0805890-mRNA-1:exon:9138;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22949801 | 22949935 | 22949801 | ID=Msa0805890-mRNA-1:exon:9137;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22949623 | 22949725 | 22949623 | ID=Msa0805890-mRNA-1:exon:9136;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22949353 | 22949419 | 22949353 | ID=Msa0805890-mRNA-1:exon:9135;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22949065 | 22949310 | 22949065 | ID=Msa0805890-mRNA-1:exon:9134;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22948921 | 22949058 | 22948921 | ID=Msa0805890-mRNA-1:exon:9133;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22948674 | 22948911 | 22948674 | ID=Msa0805890-mRNA-1:exon:9132;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22946806 | 22947052 | 22946806 | ID=Msa0805890-mRNA-1:exon:9131;Parent=Msa0805890-mRNA-1 |
| chr5_3 | exon | 22945576 | 22946413 | 22945576 | ID=Msa0805890-mRNA-1:exon:9130;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22951433 | 22951458 | 22951433 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22950571 | 22950707 | 22950571 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22949801 | 22949935 | 22949801 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22949623 | 22949725 | 22949623 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22949353 | 22949419 | 22949353 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22949065 | 22949310 | 22949065 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22948921 | 22949058 | 22948921 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22948674 | 22948911 | 22948674 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22946806 | 22947052 | 22946806 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| chr5_3 | CDS | 22945576 | 22946413 | 22945576 | ID=Msa0805890-mRNA-1:cds;Parent=Msa0805890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
