Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307420 | XP_003630093.1 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307420 | sp|Q39237|TGA1_ARATH | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.77e-155 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0307420 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043740 | Msa0307420 | 0.829729 | 4.372446e-55 | -8.615850e-47 |
| Msa0051960 | Msa0307420 | 0.813613 | 2.342919e-51 | -8.615850e-47 |
| Msa0090090 | Msa0307420 | 0.839060 | 1.986307e-57 | -8.615850e-47 |
| Msa0101960 | Msa0307420 | 0.817183 | 3.762513e-52 | -8.615850e-47 |
| Msa0129770 | Msa0307420 | 0.812522 | 4.064681e-51 | -8.615850e-47 |
| Msa0137560 | Msa0307420 | 0.836375 | 9.707974e-57 | -8.615850e-47 |
| Msa0182560 | Msa0307420 | 0.802199 | 6.283498e-49 | -8.615850e-47 |
| Msa0285890 | Msa0307420 | 0.801101 | 1.055407e-48 | -8.615850e-47 |
| Msa0296900 | Msa0307420 | 0.812857 | 3.433527e-51 | -8.615850e-47 |
| Msa0307420 | Msa0335080 | 0.811563 | 6.575568e-51 | -8.615850e-47 |
| Msa0307420 | Msa0349950 | 0.812162 | 4.869754e-51 | -8.615850e-47 |
| Msa0307420 | Msa0355550 | 0.815783 | 7.746916e-52 | -8.615850e-47 |
| Msa0307420 | Msa0490320 | 0.806447 | 8.188791e-50 | -8.615850e-47 |
| Msa0307420 | Msa0534270 | 0.802135 | 6.476905e-49 | -8.615850e-47 |
| Msa0307420 | Msa0563860 | 0.812609 | 3.889977e-51 | -8.615850e-47 |
| Msa0307420 | Msa0567480 | 0.806937 | 6.452347e-50 | -8.615850e-47 |
| Msa0307420 | Msa0577490 | 0.809819 | 1.566720e-50 | -8.615850e-47 |
| Msa0307420 | Msa0590810 | 0.800099 | 1.689159e-48 | -8.615850e-47 |
| Msa0307420 | Msa0592650 | 0.811320 | 7.426453e-51 | -8.615850e-47 |
| Msa0307420 | Msa0619310 | 0.914636 | 1.518706e-84 | -8.615850e-47 |
| Msa0307420 | Msa0635270 | 0.811188 | 7.934342e-51 | -8.615850e-47 |
| Msa0307420 | Msa0654640 | 0.806656 | 7.400362e-50 | -8.615850e-47 |
| Msa0307420 | Msa0704680 | 0.997133 | 2.025952e-237 | -8.615850e-47 |
| Msa0307420 | Msa0764070 | 0.801159 | 1.027058e-48 | -8.615850e-47 |
| Msa0307420 | Msa0775160 | 0.804921 | 1.712775e-49 | -8.615850e-47 |
| Msa0307420 | Msa0790920 | 0.806141 | 9.502503e-50 | -8.615850e-47 |
| Msa0307420 | Msa0805890 | 0.806116 | 9.615293e-50 | -8.615850e-47 |
| Msa0307420 | Msa1034450 | 0.804353 | 2.250598e-49 | -8.615850e-47 |
| Msa0307420 | Msa1074200 | 0.809415 | 1.914224e-50 | -8.615850e-47 |
| Msa0307420 | Msa1114670 | 0.817010 | 4.116683e-52 | -8.615850e-47 |
| Msa0307420 | Msa1116840 | 0.818231 | 2.183367e-52 | -8.615850e-47 |
| Msa0307420 | Msa1133700 | 0.800112 | 1.679319e-48 | -8.615850e-47 |
| Msa0307420 | Msa1159170 | 0.829161 | 6.009314e-55 | -8.615850e-47 |
| Msa0307420 | Msa1256060 | 0.837684 | 4.495833e-57 | -8.615850e-47 |
| Msa0307420 | Msa1280960 | 0.800902 | 1.159146e-48 | -8.615850e-47 |
| Msa0307420 | Msa1306830 | 0.824923 | 6.204427e-54 | -8.615850e-47 |
| Msa0307420 | Msa1362850 | 0.808954 | 2.402735e-50 | -8.615850e-47 |
| Msa0307420 | Msa1395250 | 0.811616 | 6.405818e-51 | -8.615850e-47 |
| Msa0307420 | Msa1447870 | 0.810999 | 8.718064e-51 | -8.615850e-47 |
| Msa0307420 | Msa1451990 | 0.807160 | 5.790421e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307420 | MtrunA17_Chr8g0382861 | 98.324 | 358 | 6 | 0 | 1 | 358 | 1 | 358 | 0.0 | 736 |
| Msa0307420 | MtrunA17_Chr3g0124601 | 68.785 | 362 | 105 | 4 | 4 | 358 | 3 | 363 | 0.0 | 510 |
| Msa0307420 | MtrunA17_Chr3g0115371 | 45.821 | 347 | 181 | 3 | 15 | 354 | 1 | 347 | 3.54e-102 | 305 |
| Msa0307420 | MtrunA17_Chr5g0424861 | 47.839 | 347 | 173 | 5 | 15 | 353 | 1 | 347 | 1.47e-98 | 296 |
| Msa0307420 | MtrunA17_Chr8g0353501 | 52.234 | 291 | 125 | 4 | 75 | 356 | 181 | 466 | 3.66e-94 | 288 |
| Msa0307420 | MtrunA17_Chr7g0256211 | 51.546 | 291 | 127 | 4 | 75 | 356 | 167 | 452 | 4.14e-93 | 285 |
| Msa0307420 | MtrunA17_Chr2g0321431 | 50.526 | 285 | 129 | 4 | 75 | 356 | 194 | 469 | 2.03e-90 | 280 |
| Msa0307420 | MtrunA17_Chr7g0258321 | 45.425 | 306 | 159 | 3 | 59 | 356 | 158 | 463 | 9.60e-88 | 272 |
| Msa0307420 | MtrunA17_Chr5g0422771 | 48.797 | 291 | 137 | 3 | 74 | 356 | 178 | 464 | 1.50e-86 | 269 |
| Msa0307420 | MtrunA17_Chr1g0174701 | 41.333 | 375 | 185 | 8 | 3 | 356 | 146 | 506 | 2.26e-86 | 270 |
| Msa0307420 | MtrunA17_Chr4g0026401 | 47.735 | 287 | 139 | 3 | 71 | 356 | 185 | 461 | 8.03e-85 | 265 |
| Msa0307420 | MtrunA17_Chr1g0210151 | 44.828 | 290 | 151 | 4 | 74 | 356 | 53 | 340 | 5.44e-81 | 250 |
| Msa0307420 | MtrunA17_Chr5g0424851 | 50.450 | 222 | 109 | 1 | 133 | 353 | 1 | 222 | 4.65e-67 | 218 |
| Msa0307420 | MtrunA17_Chr5g0424851 | 47.573 | 206 | 108 | 0 | 141 | 346 | 223 | 428 | 3.54e-59 | 197 |
| Msa0307420 | MtrunA17_Chr3g0093451 | 45.342 | 161 | 80 | 4 | 78 | 230 | 49 | 209 | 6.73e-40 | 140 |
| Msa0307420 | MtrunA17_Chr1g0196951 | 33.796 | 216 | 117 | 6 | 129 | 338 | 34 | 229 | 7.92e-30 | 114 |
| Msa0307420 | MtrunA17_Chr8g0384821 | 25.806 | 248 | 149 | 5 | 133 | 345 | 2 | 249 | 1.26e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0307420 | AT5G65210.5 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0307420 | AT5G65210.7 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0307420 | AT5G65210.3 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0307420 | AT5G65210.1 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0307420 | AT5G65210.2 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0307420 | AT5G65210.4 | 60.383 | 366 | 132 | 5 | 4 | 357 | 3 | 367 | 2.82e-156 | 443 |
| Msa0307420 | AT5G10030.5 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0307420 | AT5G10030.3 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0307420 | AT5G10030.1 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0307420 | AT5G10030.4 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0307420 | AT5G10030.2 | 61.264 | 364 | 128 | 5 | 4 | 357 | 3 | 363 | 9.81e-156 | 442 |
| Msa0307420 | AT5G65210.6 | 65.646 | 294 | 98 | 2 | 67 | 357 | 4 | 297 | 9.37e-139 | 396 |
| Msa0307420 | AT1G77920.1 | 49.867 | 375 | 161 | 5 | 1 | 357 | 2 | 367 | 9.47e-124 | 361 |
| Msa0307420 | AT1G22070.1 | 51.093 | 366 | 157 | 5 | 13 | 356 | 17 | 382 | 5.38e-122 | 357 |
| Msa0307420 | AT5G06950.2 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0307420 | AT5G06950.4 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0307420 | AT5G06950.1 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0307420 | AT5G06950.5 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0307420 | AT5G06950.3 | 52.759 | 290 | 124 | 4 | 75 | 356 | 46 | 330 | 7.25e-93 | 281 |
| Msa0307420 | AT1G08320.2 | 50.704 | 284 | 130 | 4 | 75 | 356 | 54 | 329 | 7.96e-93 | 281 |
| Msa0307420 | AT1G08320.5 | 50.704 | 284 | 130 | 4 | 75 | 356 | 54 | 329 | 7.96e-93 | 281 |
| Msa0307420 | AT1G08320.1 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.40e-91 | 282 |
| Msa0307420 | AT1G08320.4 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.40e-91 | 282 |
| Msa0307420 | AT1G08320.3 | 50.704 | 284 | 130 | 4 | 75 | 356 | 178 | 453 | 2.40e-91 | 282 |
| Msa0307420 | AT3G12250.5 | 51.186 | 295 | 131 | 4 | 70 | 356 | 14 | 303 | 6.37e-91 | 275 |
| Msa0307420 | AT3G12250.6 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0307420 | AT3G12250.2 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0307420 | AT3G12250.7 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0307420 | AT3G12250.1 | 51.186 | 295 | 131 | 4 | 70 | 356 | 41 | 330 | 9.47e-91 | 275 |
| Msa0307420 | AT3G12250.3 | 51.186 | 295 | 131 | 4 | 70 | 356 | 35 | 324 | 1.53e-90 | 275 |
| Msa0307420 | AT3G12250.4 | 48.589 | 319 | 143 | 5 | 54 | 356 | 42 | 355 | 3.98e-90 | 275 |
| Msa0307420 | AT5G06960.3 | 50.865 | 289 | 131 | 3 | 75 | 356 | 26 | 310 | 2.33e-89 | 271 |
| Msa0307420 | AT5G06960.2 | 50.865 | 289 | 131 | 3 | 75 | 356 | 46 | 330 | 2.40e-89 | 272 |
| Msa0307420 | AT5G06960.1 | 50.865 | 289 | 131 | 3 | 75 | 356 | 46 | 330 | 2.40e-89 | 272 |
| Msa0307420 | AT5G06839.3 | 43.567 | 342 | 167 | 5 | 41 | 356 | 117 | 458 | 1.95e-85 | 266 |
| Msa0307420 | AT5G06839.1 | 45.779 | 308 | 151 | 4 | 65 | 356 | 108 | 415 | 2.85e-85 | 264 |
| Msa0307420 | AT5G06839.2 | 44.660 | 309 | 154 | 3 | 65 | 356 | 108 | 416 | 1.71e-83 | 259 |
| Msa0307420 | AT1G68640.1 | 43.182 | 308 | 166 | 3 | 56 | 356 | 147 | 452 | 7.96e-75 | 238 |
| Msa0307420 | AT1G58330.1 | 26.906 | 223 | 146 | 6 | 139 | 346 | 3 | 223 | 2.77e-14 | 72.0 |
Find 98 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCAGTGATATACAAAT+TGG | 0.178312 | 2_4:+338361 | Msa0307420:CDS |
| CATAATCACCTATTCATAAA+TGG | 0.187077 | 2_4:-339419 | None:intergenic |
| TGATTATTTAACTTCATTTC+AGG | 0.206692 | 2_4:-336230 | None:intergenic |
| GGATTGGATTCTAATAATTT+AGG | 0.214016 | 2_4:+337375 | Msa0307420:CDS |
| TAAGAGTCGTTTGAAGAAAA+AGG | 0.214551 | 2_4:+337080 | Msa0307420:CDS |
| GAAGAGTTTGAATTGGTTAA+TGG | 0.227830 | 2_4:+335660 | Msa0307420:five_prime_UTR |
| TAGCTCCATGATCATGATTA+TGG | 0.229163 | 2_4:+339304 | Msa0307420:three_prime_UTR |
| TCTGTCAATGGTTCAATTAA+AGG | 0.231131 | 2_4:-338654 | None:intergenic |
| CCATACACCAATTTACTATA+TGG | 0.242264 | 2_4:+336165 | Msa0307420:CDS |
| ACATAACAGCTTTGAACTAT+TGG | 0.245284 | 2_4:+335871 | Msa0307420:five_prime_UTR |
| AATGGTTTGCGTTGAGAATT+TGG | 0.249237 | 2_4:+335678 | Msa0307420:five_prime_UTR |
| TGCTCGATGGCTGCTTGCTT+TGG | 0.257053 | 2_4:+339176 | Msa0307420:CDS |
| GTTCTTCCCATATAGTAAAT+TGG | 0.257991 | 2_4:-336172 | None:intergenic |
| CATTTATGAATAGGTGATTA+TGG | 0.271786 | 2_4:+339420 | Msa0307420:three_prime_UTR |
| TAGTAACTGTGTTAGCTTCT+TGG | 0.278886 | 2_4:-336468 | None:intergenic |
| ATTCCAACATTTGTCTGTTT+AGG | 0.286691 | 2_4:-338318 | None:intergenic |
| TAGTCAGAGGATGCTTCTTT+TGG | 0.297753 | 2_4:+336415 | Msa0307420:intron |
| CAAATTGGGGAACTTGTAAA+TGG | 0.313309 | 2_4:+338376 | Msa0307420:CDS |
| ATGTCCAGGGTCTCGGTTGC+TGG | 0.320409 | 2_4:+339360 | Msa0307420:three_prime_UTR |
| TTTGTTTCCTCAAGAAATAT+TGG | 0.341373 | 2_4:+336131 | Msa0307420:CDS |
| TTTGCTGGCTCTGTAAATTC+AGG | 0.350309 | 2_4:+337399 | Msa0307420:CDS |
| GCTGAAGAATAAACTTGTTT+CGG | 0.353601 | 2_4:-339529 | None:intergenic |
| GCATGACTTCTCAAGATTAT+AGG | 0.355362 | 2_4:-338694 | None:intergenic |
| AAATTGCAGGGATTGTATAT+TGG | 0.363352 | 2_4:+337348 | Msa0307420:intron |
| AGCTAACACAGTTACTAATA+AGG | 0.363384 | 2_4:+336474 | Msa0307420:CDS |
| GTGTCGTTTAAAGCTGTTAC+AGG | 0.364560 | 2_4:+337201 | Msa0307420:CDS |
| GCTCGATGGCTGCTTGCTTT+GGG | 0.374474 | 2_4:+339177 | Msa0307420:CDS |
| GATTACCTCTTTCTCGTACT+TGG | 0.376739 | 2_4:-335835 | None:intergenic |
| TGTTCTATAGACAAACTAAT+TGG | 0.379987 | 2_4:-336085 | None:intergenic |
| CCATATAGTAAATTGGTGTA+TGG | 0.382687 | 2_4:-336165 | None:intergenic |
| TGAAATGAAGTTAAATAATC+AGG | 0.391737 | 2_4:+336232 | Msa0307420:CDS |
| ATAACTCCCCATTTATGAAT+AGG | 0.399336 | 2_4:+339411 | Msa0307420:three_prime_UTR |
| GCATGATTGGAGCTGGCAAT+TGG | 0.404097 | 2_4:+335638 | None:intergenic |
| ATTGTATATTGGTGGTGGAT+TGG | 0.406379 | 2_4:+337359 | Msa0307420:CDS |
| ATAATCACCTATTCATAAAT+GGG | 0.406860 | 2_4:-339418 | None:intergenic |
| AATAGAGAGGCTGGAAGCTC+TGG | 0.410741 | 2_4:+338833 | Msa0307420:CDS |
| AGGTGTTACCTTTAGAAGTT+CGG | 0.411150 | 2_4:-338533 | None:intergenic |
| ATATCAGTGATATACAAATT+GGG | 0.413722 | 2_4:+338362 | Msa0307420:CDS |
| CTGTCAATGGTTCAATTAAA+GGG | 0.420015 | 2_4:-338653 | None:intergenic |
| AACGTTAACACTTGATAAGC+TGG | 0.424854 | 2_4:-339328 | None:intergenic |
| TCGACCCTCCGAACTTCTAA+AGG | 0.428847 | 2_4:+338525 | Msa0307420:CDS |
| GCAATTGGAAGAGTTTGAAT+TGG | 0.431789 | 2_4:+335653 | Msa0307420:five_prime_UTR |
| AACCGTTGTTCCTCTGTCAA+TGG | 0.441867 | 2_4:-338666 | None:intergenic |
| TAAGGGATTTGAGCAAACTT+TGG | 0.444298 | 2_4:+339217 | Msa0307420:CDS |
| TGTTGTGCTCTTTCTATGAT+CGG | 0.445506 | 2_4:+335909 | Msa0307420:five_prime_UTR |
| GTGAATACTTTCAACGCCTA+AGG | 0.464354 | 2_4:+339199 | Msa0307420:CDS |
| CATACACCAATTTACTATAT+GGG | 0.478931 | 2_4:+336166 | Msa0307420:CDS |
| AGATGCCCTTTCACAAGGTA+TGG | 0.480625 | 2_4:+338728 | Msa0307420:CDS |
| AGAGCTAGATCATACAAAAC+AGG | 0.481991 | 2_4:+337231 | Msa0307420:CDS |
| GGATATTGCAATAGAGAGGC+TGG | 0.484290 | 2_4:+338824 | Msa0307420:CDS |
| AAAGGGCATCTTCTGCTTGT+CGG | 0.484492 | 2_4:-338716 | None:intergenic |
| TAACTGTGTTAGCTTCTTGG+TGG | 0.484546 | 2_4:-336465 | None:intergenic |
| TCTGGCTAGCTTTGTGAACC+AGG | 0.487895 | 2_4:+338851 | Msa0307420:CDS |
| CAGGGATTGTATATTGGTGG+TGG | 0.489623 | 2_4:+337354 | Msa0307420:intron |
| AAGAACCAAGTACGAGAAAG+AGG | 0.504303 | 2_4:+335830 | Msa0307420:five_prime_UTR |
| CTGGGCCATAATCATGATCA+TGG | 0.510413 | 2_4:-339309 | None:intergenic |
| CTTGTTGACACAGTTGCAGC+AGG | 0.514923 | 2_4:+338768 | Msa0307420:CDS |
| CATATAGTAAATTGGTGTAT+GGG | 0.519743 | 2_4:-336164 | None:intergenic |
| AAAGTTTGCTCAAATCCCTT+AGG | 0.521782 | 2_4:-339215 | None:intergenic |
| AGACCTAAACAGACAAATGT+TGG | 0.522384 | 2_4:+338315 | Msa0307420:CDS |
| TGCAGGTTCACGAGGACGAT+TGG | 0.528063 | 2_4:-339241 | None:intergenic |
| TGGTTCTTCCTCGATTTACT+CGG | 0.543111 | 2_4:-335815 | None:intergenic |
| TGAATACTTTCAACGCCTAA+GGG | 0.549102 | 2_4:+339200 | Msa0307420:CDS |
| ATGTGGAAAACAACAGCTGA+AGG | 0.550259 | 2_4:+338478 | Msa0307420:CDS |
| ACAAATTGAGAAGATGATGA+AGG | 0.553463 | 2_4:-336113 | None:intergenic |
| AGACAAATGTTGGAATTGAA+AGG | 0.555362 | 2_4:+338325 | Msa0307420:CDS |
| TTTGCCAGCAACCGAGACCC+TGG | 0.555908 | 2_4:-339364 | None:intergenic |
| ACAGGCTGATCATCTTCGAC+AGG | 0.558370 | 2_4:+339110 | Msa0307420:intron |
| GAAGAACATTTCAAGAGTAA+TGG | 0.562707 | 2_4:+336188 | Msa0307420:CDS |
| GCAGCAGGACAACTCGTTGA+AGG | 0.566836 | 2_4:+338783 | Msa0307420:CDS |
| CTCTTGCATGAAGACTATGC+AGG | 0.569640 | 2_4:-339258 | None:intergenic |
| AGGAACTTACATTCCACAGA+TGG | 0.575188 | 2_4:+338803 | Msa0307420:CDS |
| CCGTACGTCAAACTGCTCGA+TGG | 0.578154 | 2_4:+339163 | Msa0307420:CDS |
| TATCAGTGATATACAAATTG+GGG | 0.581840 | 2_4:+338363 | Msa0307420:CDS |
| ATATACACCAATATTTCTTG+AGG | 0.587022 | 2_4:-336138 | None:intergenic |
| TTGCAGGGATTGTATATTGG+TGG | 0.592067 | 2_4:+337351 | Msa0307420:intron |
| TAAGATGGAGTATGAACACT+GGG | 0.600728 | 2_4:+338288 | Msa0307420:CDS |
| ACGTTAACACTTGATAAGCT+GGG | 0.601137 | 2_4:-339327 | None:intergenic |
| TGTTACCTTTAGAAGTTCGG+AGG | 0.601165 | 2_4:-338530 | None:intergenic |
| TTAAGATGGAGTATGAACAC+TGG | 0.603260 | 2_4:+338287 | Msa0307420:CDS |
| ATTAGTTTGTCTATAGAACA+TGG | 0.607742 | 2_4:+336088 | Msa0307420:exon |
| AACCATTGACAGAGGAACAA+CGG | 0.614266 | 2_4:+338664 | Msa0307420:CDS |
| AGCAACCGAGACCCTGGACA+TGG | 0.617265 | 2_4:-339358 | None:intergenic |
| GCAGAAGATGCCCTTTCACA+AGG | 0.620831 | 2_4:+338723 | Msa0307420:CDS |
| TTTAATTGAACCATTGACAG+AGG | 0.625048 | 2_4:+338656 | Msa0307420:CDS |
| TCTATGTTATCACTGGCATG+TGG | 0.630097 | 2_4:+338461 | Msa0307420:CDS |
| CCATCGAGCAGTTTGACGTA+CGG | 0.630335 | 2_4:-339163 | None:intergenic |
| TCTATTGCAATATCCATCTG+TGG | 0.636700 | 2_4:-338816 | None:intergenic |
| TTTATCTTCCGAGTAAATCG+AGG | 0.639567 | 2_4:+335807 | Msa0307420:five_prime_UTR |
| GTTACCTTTAGAAGTTCGGA+GGG | 0.640489 | 2_4:-338529 | None:intergenic |
| GAAGACTATGCAGGTTCACG+AGG | 0.645466 | 2_4:-339249 | None:intergenic |
| AGATGGATATTGCAATAGAG+AGG | 0.647680 | 2_4:+338820 | Msa0307420:CDS |
| TAATCACCTATTCATAAATG+GGG | 0.647734 | 2_4:-339417 | None:intergenic |
| TGTGGAAAACAACAGCTGAA+GGG | 0.647786 | 2_4:+338479 | Msa0307420:CDS |
| GTTTGAAATAGTGATTCATG+AGG | 0.660995 | 2_4:-338399 | None:intergenic |
| ACGTCTCGCACAAAATCGAG+AGG | 0.680873 | 2_4:+337050 | Msa0307420:CDS |
| GATGGAGTATGAACACTGGG+TGG | 0.682481 | 2_4:+338291 | Msa0307420:CDS |
| TTGATGGTGAGTCACCAAGG+TGG | 0.728144 | 2_4:+335712 | Msa0307420:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATAAATTTAGTAAACT+TGG | - | chr2_4:336265-336284 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTATAAAGCAAAA+AGG | - | chr2_4:337646-337665 | None:intergenic | 15.0% |
| !!! | TTGATATATAATATTAGCTT+TGG | + | chr2_4:338169-338188 | Msa0307420:intron | 15.0% |
| !!! | TGATATATAATATTAGCTTT+GGG | + | chr2_4:338170-338189 | Msa0307420:intron | 15.0% |
| !! | TTGACAATAATAAACTTAAT+TGG | - | chr2_4:339090-339109 | None:intergenic | 15.0% |
| !! | TGATTGTTTATATGACTAAA+TGG | + | chr2_4:336057-336076 | Msa0307420:intron | 20.0% |
| !!! | TGATTATTTAACTTCATTTC+AGG | - | chr2_4:336233-336252 | None:intergenic | 20.0% |
| !! | TGAAATGAAGTTAAATAATC+AGG | + | chr2_4:336232-336251 | Msa0307420:CDS | 20.0% |
| !! | CCTTTAACAAAATTTCAAAA+TGG | - | chr2_4:336802-336821 | None:intergenic | 20.0% |
| !!! | CCATTTTGAAATTTTGTTAA+AGG | + | chr2_4:336799-336818 | Msa0307420:intron | 20.0% |
| !!! | AAACTTTGAGAAAATTCTTT+AGG | + | chr2_4:337584-337603 | Msa0307420:intron | 20.0% |
| !! | ACAAAAGCAACATTAATTAA+AGG | - | chr2_4:337797-337816 | None:intergenic | 20.0% |
| !! | AGTAACAAAATTTATTAGAG+AGG | + | chr2_4:337936-337955 | Msa0307420:intron | 20.0% |
| !! | GTAACAAAATTTATTAGAGA+GGG | + | chr2_4:337937-337956 | Msa0307420:intron | 20.0% |
| !!! | GAAATTTTGGAAGAAATTAT+TGG | - | chr2_4:338019-338038 | None:intergenic | 20.0% |
| !!! | TCTATTCTAAAACTAGTTTT+TGG | + | chr2_4:338228-338247 | Msa0307420:intron | 20.0% |
| !!! | AGTTGTTATTTCTGTAAATT+AGG | - | chr2_4:338266-338285 | None:intergenic | 20.0% |
| !!! | AGAAATAACAACTTTTAAGA+TGG | + | chr2_4:338273-338292 | Msa0307420:intron | 20.0% |
| !! | ATATCAGTGATATACAAATT+GGG | + | chr2_4:338362-338381 | Msa0307420:CDS | 20.0% |
| !! | AATATATAACATACATTACC+TGG | - | chr2_4:338872-338891 | None:intergenic | 20.0% |
| !! | CACAAATTACCAAATTAAAA+AGG | + | chr2_4:339038-339057 | Msa0307420:intron | 20.0% |
| !!! | CTAGTTTAACCTTTTTAATT+TGG | - | chr2_4:339050-339069 | None:intergenic | 20.0% |
| !! | CAAATTAAAAAGGTTAAACT+AGG | + | chr2_4:339048-339067 | Msa0307420:intron | 20.0% |
| !! | TAAGTTTATTATTGTCAAAC+AGG | + | chr2_4:339092-339111 | Msa0307420:intron | 20.0% |
| !! | ATAATCACCTATTCATAAAT+GGG | - | chr2_4:339421-339440 | None:intergenic | 20.0% |
| !!! | TTTGGTTCTGTATTTTTTGA+TGG | + | chr2_4:335696-335715 | Msa0307420:five_prime_UTR | 25.0% |
| !!! | ATTTGACTTTTGCTTTTACA+AGG | + | chr2_4:335995-336014 | Msa0307420:intron | 25.0% |
| ! | TGTTCTATAGACAAACTAAT+TGG | - | chr2_4:336088-336107 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTCTATAGAACA+TGG | + | chr2_4:336088-336107 | Msa0307420:exon | 25.0% |
| ! | TTTGTTTCCTCAAGAAATAT+TGG | + | chr2_4:336131-336150 | Msa0307420:CDS | 25.0% |
| ! | ATATACACCAATATTTCTTG+AGG | - | chr2_4:336141-336160 | None:intergenic | 25.0% |
| ! | CATATAGTAAATTGGTGTAT+GGG | - | chr2_4:336167-336186 | None:intergenic | 25.0% |
| ! | CATACACCAATTTACTATAT+GGG | + | chr2_4:336166-336185 | Msa0307420:CDS | 25.0% |
| !!! | TGTATGGACTATTTTTTACA+CGG | + | chr2_4:336644-336663 | Msa0307420:intron | 25.0% |
| !! | TCAATCACATTAATCCATTT+TGG | + | chr2_4:336723-336742 | Msa0307420:intron | 25.0% |
| !!! | TGCGTTTTTTTATGCTTATA+AGG | + | chr2_4:337004-337023 | Msa0307420:intron | 25.0% |
| ! | GATATTGAACAATATGAAGT+AGG | - | chr2_4:337285-337304 | None:intergenic | 25.0% |
| ! | GGATTGGATTCTAATAATTT+AGG | + | chr2_4:337375-337394 | Msa0307420:CDS | 25.0% |
| !!! | TCTAATAATTTAGGTTTTGC+TGG | + | chr2_4:337384-337403 | Msa0307420:CDS | 25.0% |
| !!! | GTTGGTTTGTTATTAAATTC+TGG | + | chr2_4:337421-337440 | Msa0307420:intron | 25.0% |
| ! | CAAAAAAGTGATTTCATCAT+AGG | - | chr2_4:337489-337508 | None:intergenic | 25.0% |
| !! | CTTACTGCAGATATATATTT+TGG | + | chr2_4:337662-337681 | Msa0307420:intron | 25.0% |
| ! | ACATTAATTAAAGGAATGGA+GGG | - | chr2_4:337788-337807 | None:intergenic | 25.0% |
| ! | AACATTAATTAAAGGAATGG+AGG | - | chr2_4:337789-337808 | None:intergenic | 25.0% |
| ! | AGCAACATTAATTAAAGGAA+TGG | - | chr2_4:337792-337811 | None:intergenic | 25.0% |
| ! | CATATCAGTGATATACAAAT+TGG | + | chr2_4:338361-338380 | Msa0307420:CDS | 25.0% |
| ! | TATCAGTGATATACAAATTG+GGG | + | chr2_4:338363-338382 | Msa0307420:CDS | 25.0% |
| ! | CGTATAATTTAGATTAGATG+AGG | + | chr2_4:338896-338915 | Msa0307420:intron | 25.0% |
| !! | TTTGGTAATTTGTGTGTTAA+TGG | - | chr2_4:339032-339051 | None:intergenic | 25.0% |
| ! | TAATCACCTATTCATAAATG+GGG | - | chr2_4:339420-339439 | None:intergenic | 25.0% |
| ! | CATAATCACCTATTCATAAA+TGG | - | chr2_4:339422-339441 | None:intergenic | 25.0% |
| ! | CATTTATGAATAGGTGATTA+TGG | + | chr2_4:339420-339439 | Msa0307420:three_prime_UTR | 25.0% |
| GAAGAGTTTGAATTGGTTAA+TGG | + | chr2_4:335660-335679 | Msa0307420:five_prime_UTR | 30.0% | |
| !! | ACATAACAGCTTTGAACTAT+TGG | + | chr2_4:335871-335890 | Msa0307420:five_prime_UTR | 30.0% |
| !!! | CAAGGCATTTTATTGATTCT+TGG | + | chr2_4:336013-336032 | Msa0307420:intron | 30.0% |
| TGTTTATATGACTAAATGGC+AGG | + | chr2_4:336061-336080 | Msa0307420:intron | 30.0% | |
| ACAAATTGAGAAGATGATGA+AGG | - | chr2_4:336116-336135 | None:intergenic | 30.0% | |
| CCATATAGTAAATTGGTGTA+TGG | - | chr2_4:336168-336187 | None:intergenic | 30.0% | |
| CCATACACCAATTTACTATA+TGG | + | chr2_4:336165-336184 | Msa0307420:CDS | 30.0% | |
| GTTCTTCCCATATAGTAAAT+TGG | - | chr2_4:336175-336194 | None:intergenic | 30.0% | |
| GAAGAACATTTCAAGAGTAA+TGG | + | chr2_4:336188-336207 | Msa0307420:CDS | 30.0% | |
| !!! | GATGCTTCTTTTGGAATATT+GGG | + | chr2_4:336424-336443 | Msa0307420:CDS | 30.0% |
| AGCTAACACAGTTACTAATA+AGG | + | chr2_4:336474-336493 | Msa0307420:CDS | 30.0% | |
| ! | TGGGTTGAACAAAATTAATG+TGG | - | chr2_4:336609-336628 | None:intergenic | 30.0% |
| TCCATACATGTTTGATATGA+CGG | - | chr2_4:336632-336651 | None:intergenic | 30.0% | |
| !!! | GTATGGACTATTTTTTACAC+GGG | + | chr2_4:336645-336664 | Msa0307420:intron | 30.0% |
| !!! | TATGGACTATTTTTTACACG+GGG | + | chr2_4:336646-336665 | Msa0307420:intron | 30.0% |
| TTGAACTTAACATTGCACAT+GGG | - | chr2_4:336673-336692 | None:intergenic | 30.0% | |
| ATTGCTCAATCAGTATTTCA+TGG | + | chr2_4:336828-336847 | Msa0307420:intron | 30.0% | |
| CTAAGTTTCTACAAAGTTTG+AGG | - | chr2_4:336889-336908 | None:intergenic | 30.0% | |
| !!! | AGCATTTTAGAACCACATTT+TGG | + | chr2_4:336922-336941 | Msa0307420:intron | 30.0% |
| TAAGAGTCGTTTGAAGAAAA+AGG | + | chr2_4:337080-337099 | Msa0307420:CDS | 30.0% | |
| GAATCAAATGCTTGTTTGTT+TGG | - | chr2_4:337141-337160 | None:intergenic | 30.0% | |
| AAATTGCAGGGATTGTATAT+TGG | + | chr2_4:337348-337367 | Msa0307420:intron | 30.0% | |
| AACCTACAAAATCAACTACA+AGG | + | chr2_4:337553-337572 | Msa0307420:intron | 30.0% | |
| ACCTACAAAATCAACTACAA+GGG | + | chr2_4:337554-337573 | Msa0307420:intron | 30.0% | |
| !! | ACTGCAGATATATATTTTGG+TGG | + | chr2_4:337665-337684 | Msa0307420:intron | 30.0% |
| TTAATGCAGAGAGAAATGTT+TGG | + | chr2_4:337901-337920 | Msa0307420:intron | 30.0% | |
| ! | AGAGAGAAATGTTTGGAATA+AGG | + | chr2_4:337908-337927 | Msa0307420:intron | 30.0% |
| TGGATTCAGAGTTTCAAAAT+TGG | - | chr2_4:337999-338018 | None:intergenic | 30.0% | |
| ! | TTCCAAAATTTCAAGTAAGC+TGG | + | chr2_4:338027-338046 | Msa0307420:intron | 30.0% |
| GAATAGAGTTCAATACAAGA+AGG | - | chr2_4:338215-338234 | None:intergenic | 30.0% | |
| ATTCCAACATTTGTCTGTTT+AGG | - | chr2_4:338321-338340 | None:intergenic | 30.0% | |
| AGACAAATGTTGGAATTGAA+AGG | + | chr2_4:338325-338344 | Msa0307420:CDS | 30.0% | |
| ! | GTTTGAAATAGTGATTCATG+AGG | - | chr2_4:338402-338421 | None:intergenic | 30.0% |
| ! | GATGTTTTCTATGTTATCAC+TGG | + | chr2_4:338454-338473 | Msa0307420:CDS | 30.0% |
| ! | GTTGATCAAGTATATCGATT+AGG | - | chr2_4:338556-338575 | None:intergenic | 30.0% |
| ATCGATATACTTGATCAACA+TGG | + | chr2_4:338557-338576 | Msa0307420:intron | 30.0% | |
| TCGATATACTTGATCAACAT+GGG | + | chr2_4:338558-338577 | Msa0307420:intron | 30.0% | |
| CTGTCAATGGTTCAATTAAA+GGG | - | chr2_4:338656-338675 | None:intergenic | 30.0% | |
| TCTGTCAATGGTTCAATTAA+AGG | - | chr2_4:338657-338676 | None:intergenic | 30.0% | |
| TTTAATTGAACCATTGACAG+AGG | + | chr2_4:338656-338675 | Msa0307420:CDS | 30.0% | |
| ! | TTTTTCCATACCTTGTGAAA+GGG | - | chr2_4:338736-338755 | None:intergenic | 30.0% |
| !! | AGTTTTATCAGAAGTATGCA+TGG | + | chr2_4:338994-339013 | Msa0307420:intron | 30.0% |
| ATAACTCCCCATTTATGAAT+AGG | + | chr2_4:339411-339430 | Msa0307420:three_prime_UTR | 30.0% | |
| GCAATTGGAAGAGTTTGAAT+TGG | + | chr2_4:335653-335672 | Msa0307420:five_prime_UTR | 35.0% | |
| ! | AATGGTTTGCGTTGAGAATT+TGG | + | chr2_4:335678-335697 | Msa0307420:five_prime_UTR | 35.0% |
| TTTATCTTCCGAGTAAATCG+AGG | + | chr2_4:335807-335826 | Msa0307420:five_prime_UTR | 35.0% | |
| TGTTGTGCTCTTTCTATGAT+CGG | + | chr2_4:335909-335928 | Msa0307420:five_prime_UTR | 35.0% | |
| !! | TATTGATTCTTGGCAGTTCA+TGG | + | chr2_4:336023-336042 | Msa0307420:intron | 35.0% |
| TGCTAAATACCTATAGTCAG+AGG | + | chr2_4:336402-336421 | Msa0307420:intron | 35.0% | |
| !!! | GGATGCTTCTTTTGGAATAT+TGG | + | chr2_4:336423-336442 | Msa0307420:CDS | 35.0% |
| ! | TAGTAACTGTGTTAGCTTCT+TGG | - | chr2_4:336471-336490 | None:intergenic | 35.0% |
| ! | TTGTCGCTTCAACATAATCA+AGG | + | chr2_4:336581-336600 | Msa0307420:intron | 35.0% |
| TACATGTTTGATATGACGGT+GGG | - | chr2_4:336628-336647 | None:intergenic | 35.0% | |
| ATACATGTTTGATATGACGG+TGG | - | chr2_4:336629-336648 | None:intergenic | 35.0% | |
| ACCGTCATATCAAACATGTA+TGG | + | chr2_4:336628-336647 | Msa0307420:intron | 35.0% | |
| GTTGAACTTAACATTGCACA+TGG | - | chr2_4:336674-336693 | None:intergenic | 35.0% | |
| !! | ATTGGTCGACTTTTCCAAAA+TGG | - | chr2_4:336740-336759 | None:intergenic | 35.0% |
| AAAAGTCGACCAATCTGAAA+GGG | + | chr2_4:336746-336765 | Msa0307420:intron | 35.0% | |
| TTGAGGCATAAGGAAAGAAT+GGG | - | chr2_4:336872-336891 | None:intergenic | 35.0% | |
| ! | TTTGAGGCATAAGGAAAGAA+TGG | - | chr2_4:336873-336892 | None:intergenic | 35.0% |
| ! | TCTACAAAGTTTGAGGCATA+AGG | - | chr2_4:336882-336901 | None:intergenic | 35.0% |
| ACATCCAAAATTTGGAAGCA+GGG | - | chr2_4:336978-336997 | None:intergenic | 35.0% | |
| GTCGTTTGAAGAAAAAGGTT+TGG | + | chr2_4:337085-337104 | Msa0307420:intron | 35.0% | |
| AGAGCTAGATCATACAAAAC+AGG | + | chr2_4:337231-337250 | Msa0307420:CDS | 35.0% | |
| CATCAAGAGATTGACAAATG+AGG | - | chr2_4:337323-337342 | None:intergenic | 35.0% | |
| TCTTGATGCAACAAAATTGC+AGG | + | chr2_4:337335-337354 | Msa0307420:intron | 35.0% | |
| CTTGATGCAACAAAATTGCA+GGG | + | chr2_4:337336-337355 | Msa0307420:intron | 35.0% | |
| !! | ATTGTATATTGGTGGTGGAT+TGG | + | chr2_4:337359-337378 | Msa0307420:CDS | 35.0% |
| TGTCACTGCTCTTATAAATG+TGG | + | chr2_4:337459-337478 | Msa0307420:intron | 35.0% | |
| !! | TCCCTTGTAGTTGATTTTGT+AGG | - | chr2_4:337558-337577 | None:intergenic | 35.0% |
| AAAAGGACATGCATGCAAAA+AGG | - | chr2_4:337629-337648 | None:intergenic | 35.0% | |
| !!! | GCAGATATATATTTTGGTGG+TGG | + | chr2_4:337668-337687 | Msa0307420:intron | 35.0% |
| AGTGAGGTCATTGCTAAAAT+AGG | - | chr2_4:337750-337769 | None:intergenic | 35.0% | |
| !!! | CTACTCCTGTGGAAATTTTT+TGG | + | chr2_4:337962-337981 | Msa0307420:intron | 35.0% |
| TCACACCAAAAAATTTCCAC+AGG | - | chr2_4:337970-337989 | None:intergenic | 35.0% | |
| ! | AGCCAGCTTACTTGAAATTT+TGG | - | chr2_4:338032-338051 | None:intergenic | 35.0% |
| TTAGACACTACATTCTGTTC+TGG | + | chr2_4:338146-338165 | Msa0307420:intron | 35.0% | |
| CAAGAAGGAAAACATACTCA+AGG | - | chr2_4:338200-338219 | None:intergenic | 35.0% | |
| TTAAGATGGAGTATGAACAC+TGG | + | chr2_4:338287-338306 | Msa0307420:CDS | 35.0% | |
| TAAGATGGAGTATGAACACT+GGG | + | chr2_4:338288-338307 | Msa0307420:CDS | 35.0% | |
| AGACCTAAACAGACAAATGT+TGG | + | chr2_4:338315-338334 | Msa0307420:CDS | 35.0% | |
| CAAATTGGGGAACTTGTAAA+TGG | + | chr2_4:338376-338395 | Msa0307420:CDS | 35.0% | |
| ! | AGGTGTTACCTTTAGAAGTT+CGG | - | chr2_4:338536-338555 | None:intergenic | 35.0% |
| CGATATACTTGATCAACATG+GGG | + | chr2_4:338559-338578 | Msa0307420:intron | 35.0% | |
| CACAAACATACATTATGCCA+TGG | - | chr2_4:338612-338631 | None:intergenic | 35.0% | |
| ATGTTTGTGATGAGATTTGC+AGG | + | chr2_4:338623-338642 | Msa0307420:intron | 35.0% | |
| GCATGACTTCTCAAGATTAT+AGG | - | chr2_4:338697-338716 | None:intergenic | 35.0% | |
| ! | GTTTTTCCATACCTTGTGAA+AGG | - | chr2_4:338737-338756 | None:intergenic | 35.0% |
| ACAAGGTATGGAAAAACTAC+AGG | + | chr2_4:338740-338759 | Msa0307420:CDS | 35.0% | |
| CAAGGTATGGAAAAACTACA+GGG | + | chr2_4:338741-338760 | Msa0307420:CDS | 35.0% | |
| TCTATTGCAATATCCATCTG+TGG | - | chr2_4:338819-338838 | None:intergenic | 35.0% | |
| AGATGGATATTGCAATAGAG+AGG | + | chr2_4:338820-338839 | Msa0307420:CDS | 35.0% | |
| TTAGATGAGGTTATGAGTAG+TGG | + | chr2_4:338909-338928 | Msa0307420:intron | 35.0% | |
| TAAAACTTATACTCCTGCCA+TGG | - | chr2_4:338981-339000 | None:intergenic | 35.0% | |
| TGAATACTTTCAACGCCTAA+GGG | + | chr2_4:339200-339219 | Msa0307420:CDS | 35.0% | |
| ! | AAAGTTTGCTCAAATCCCTT+AGG | - | chr2_4:339218-339237 | None:intergenic | 35.0% |
| TAAGGGATTTGAGCAAACTT+TGG | + | chr2_4:339217-339236 | Msa0307420:CDS | 35.0% | |
| TAGCTCCATGATCATGATTA+TGG | + | chr2_4:339304-339323 | Msa0307420:three_prime_UTR | 35.0% | |
| ACGTTAACACTTGATAAGCT+GGG | - | chr2_4:339330-339349 | None:intergenic | 35.0% | |
| AACGTTAACACTTGATAAGC+TGG | - | chr2_4:339331-339350 | None:intergenic | 35.0% | |
| !!! | TTTTTGATGGTGAGTCACCA+AGG | + | chr2_4:335709-335728 | Msa0307420:five_prime_UTR | 40.0% |
| TGGTTCTTCCTCGATTTACT+CGG | - | chr2_4:335818-335837 | None:intergenic | 40.0% | |
| AAGAACCAAGTACGAGAAAG+AGG | + | chr2_4:335830-335849 | Msa0307420:five_prime_UTR | 40.0% | |
| GATTACCTCTTTCTCGTACT+TGG | - | chr2_4:335838-335857 | None:intergenic | 40.0% | |
| !! | AAGAAGCATCCTCTGACTAT+AGG | - | chr2_4:336414-336433 | None:intergenic | 40.0% |
| ! | TAGTCAGAGGATGCTTCTTT+TGG | + | chr2_4:336415-336434 | Msa0307420:intron | 40.0% |
| ! | TAACTGTGTTAGCTTCTTGG+TGG | - | chr2_4:336468-336487 | None:intergenic | 40.0% |
| ! | TTGCTACTTGCTTGATATCG+CGG | + | chr2_4:336507-336526 | Msa0307420:intron | 40.0% |
| TATGTTGAAGCGACAAAGTG+CGG | - | chr2_4:336577-336596 | None:intergenic | 40.0% | |
| GAAAAGTCGACCAATCTGAA+AGG | + | chr2_4:336745-336764 | Msa0307420:intron | 40.0% | |
| TGCAAAGTGAGTCCAAAATG+TGG | - | chr2_4:336937-336956 | None:intergenic | 40.0% | |
| CATCCAAAATTTGGAAGCAG+GGG | - | chr2_4:336977-336996 | None:intergenic | 40.0% | |
| GACATCCAAAATTTGGAAGC+AGG | - | chr2_4:336979-336998 | None:intergenic | 40.0% | |
| ! | GCTTCCAAATTTTGGATGTC+TGG | + | chr2_4:336979-336998 | Msa0307420:intron | 40.0% |
| CAAGCCAGACATCCAAAATT+TGG | - | chr2_4:336986-337005 | None:intergenic | 40.0% | |
| GATTCCTGACGTTTCATAAC+AGG | + | chr2_4:337156-337175 | Msa0307420:intron | 40.0% | |
| !! | GTGTCGTTTAAAGCTGTTAC+AGG | + | chr2_4:337201-337220 | Msa0307420:CDS | 40.0% |
| TTGCAGGGATTGTATATTGG+TGG | + | chr2_4:337351-337370 | Msa0307420:intron | 40.0% | |
| !! | TTTGCTGGCTCTGTAAATTC+AGG | + | chr2_4:337399-337418 | Msa0307420:CDS | 40.0% |
| AATAGGATTTGAGTAGCTGC+TGG | - | chr2_4:337733-337752 | None:intergenic | 40.0% | |
| GAGTATCTGAATGTACAGTG+AGG | - | chr2_4:337766-337785 | None:intergenic | 40.0% | |
| TCTATGTTATCACTGGCATG+TGG | + | chr2_4:338461-338480 | Msa0307420:CDS | 40.0% | |
| ATGTGGAAAACAACAGCTGA+AGG | + | chr2_4:338478-338497 | Msa0307420:CDS | 40.0% | |
| TGTGGAAAACAACAGCTGAA+GGG | + | chr2_4:338479-338498 | Msa0307420:CDS | 40.0% | |
| ! | GAAGGGTTTTTCTTGTGGAT+TGG | + | chr2_4:338496-338515 | Msa0307420:CDS | 40.0% |
| ! | GTTACCTTTAGAAGTTCGGA+GGG | - | chr2_4:338532-338551 | None:intergenic | 40.0% |
| ! | TGTTACCTTTAGAAGTTCGG+AGG | - | chr2_4:338533-338552 | None:intergenic | 40.0% |
| ! | CTGCTGTCATATTTCTACCA+TGG | + | chr2_4:338592-338611 | Msa0307420:intron | 40.0% |
| AACCATTGACAGAGGAACAA+CGG | + | chr2_4:338664-338683 | Msa0307420:CDS | 40.0% | |
| AGGAACTTACATTCCACAGA+TGG | + | chr2_4:338803-338822 | Msa0307420:CDS | 40.0% | |
| GACACAACAGTTATGAGTAG+TGG | + | chr2_4:338941-338960 | Msa0307420:intron | 40.0% | |
| TGGAAAACAATGCTGATCCA+TGG | + | chr2_4:338961-338980 | Msa0307420:intron | 40.0% | |
| GTGAATACTTTCAACGCCTA+AGG | + | chr2_4:339199-339218 | Msa0307420:CDS | 40.0% | |
| ACGTTCAAAAAACCATGTCC+AGG | + | chr2_4:339346-339365 | Msa0307420:three_prime_UTR | 40.0% | |
| CGTTCAAAAAACCATGTCCA+GGG | + | chr2_4:339347-339366 | Msa0307420:three_prime_UTR | 40.0% | |
| CTGAAAAAGACATGCCACCT+TGG | - | chr2_4:335729-335748 | None:intergenic | 45.0% | |
| CTCACTTTGCACTGCAGATT+AGG | + | chr2_4:336946-336965 | Msa0307420:intron | 45.0% | |
| ACTTTGCACTGCAGATTAGG+AGG | + | chr2_4:336949-336968 | Msa0307420:intron | 45.0% | |
| CTTTGCACTGCAGATTAGGA+GGG | + | chr2_4:336950-336969 | Msa0307420:intron | 45.0% | |
| TGAGCCTGTTATGAAACGTC+AGG | - | chr2_4:337163-337182 | None:intergenic | 45.0% | |
| CAGGGATTGTATATTGGTGG+TGG | + | chr2_4:337354-337373 | Msa0307420:intron | 45.0% | |
| !! | CTGGCTCTGTAAATTCAGGT+TGG | + | chr2_4:337403-337422 | Msa0307420:intron | 45.0% |
| !! | TTTGGTGGTGGACCTAAACT+AGG | + | chr2_4:337680-337699 | Msa0307420:intron | 45.0% |
| !! | TTGGTGGTGGACCTAAACTA+GGG | + | chr2_4:337681-337700 | Msa0307420:intron | 45.0% |
| GGACCTAAACTAGGGCTTAT+TGG | + | chr2_4:337689-337708 | Msa0307420:intron | 45.0% | |
| AGGCCAATAAGCCCTAGTTT+AGG | - | chr2_4:337695-337714 | None:intergenic | 45.0% | |
| GCTGGCTATTATGTACCTAG+TGG | + | chr2_4:338045-338064 | Msa0307420:intron | 45.0% | |
| GCTATTATGTACCTAGTGGC+AGG | + | chr2_4:338049-338068 | Msa0307420:intron | 45.0% | |
| ! | CAGCTGAAGGGTTTTTCTTG+TGG | + | chr2_4:338491-338510 | Msa0307420:CDS | 45.0% |
| !!! | GGGTTTTTCTTGTGGATTGG+AGG | + | chr2_4:338499-338518 | Msa0307420:CDS | 45.0% |
| GTGATGAGATTTGCAGGTTC+TGG | + | chr2_4:338629-338648 | Msa0307420:intron | 45.0% | |
| AACCGTTGTTCCTCTGTCAA+TGG | - | chr2_4:338669-338688 | None:intergenic | 45.0% | |
| !! | AAAGGGCATCTTCTGCTTGT+CGG | - | chr2_4:338719-338738 | None:intergenic | 45.0% |
| AGATGCCCTTTCACAAGGTA+TGG | + | chr2_4:338728-338747 | Msa0307420:CDS | 45.0% | |
| GGATATTGCAATAGAGAGGC+TGG | + | chr2_4:338824-338843 | Msa0307420:CDS | 45.0% | |
| AAACAATGCTGATCCATGGC+AGG | + | chr2_4:338965-338984 | Msa0307420:intron | 45.0% | |
| CTCTTGCATGAAGACTATGC+AGG | - | chr2_4:339261-339280 | None:intergenic | 45.0% | |
| CTGGGCCATAATCATGATCA+TGG | - | chr2_4:339312-339331 | None:intergenic | 45.0% | |
| AAAAACCATGTCCAGGGTCT+CGG | + | chr2_4:339353-339372 | Msa0307420:three_prime_UTR | 45.0% | |
| !! | TTGATGGTGAGTCACCAAGG+TGG | + | chr2_4:335712-335731 | Msa0307420:five_prime_UTR | 50.0% |
| TCGCATCAGCCCTTTCAGAT+TGG | - | chr2_4:336758-336777 | None:intergenic | 50.0% | |
| ! | GGTCCCCTGCTTCCAAATTT+TGG | + | chr2_4:336971-336990 | Msa0307420:intron | 50.0% |
| ACGTCTCGCACAAAATCGAG+AGG | + | chr2_4:337050-337069 | Msa0307420:CDS | 50.0% | |
| ! | GGCTTATTGGCCTCACCATT+GGG | + | chr2_4:337702-337721 | Msa0307420:intron | 50.0% |
| GATTTGAGTAGCTGCTGGTC+TGG | - | chr2_4:337728-337747 | None:intergenic | 50.0% | |
| !! | TAGAGAGGGTACTACTCCTG+TGG | + | chr2_4:337951-337970 | Msa0307420:intron | 50.0% |
| TTGTACACAGTCCTGCCACT+AGG | - | chr2_4:338063-338082 | None:intergenic | 50.0% | |
| GATGGAGTATGAACACTGGG+TGG | + | chr2_4:338291-338310 | Msa0307420:CDS | 50.0% | |
| TCGACCCTCCGAACTTCTAA+AGG | + | chr2_4:338525-338544 | Msa0307420:CDS | 50.0% | |
| GCAGAAGATGCCCTTTCACA+AGG | + | chr2_4:338723-338742 | Msa0307420:CDS | 50.0% | |
| CTTGTTGACACAGTTGCAGC+AGG | + | chr2_4:338768-338787 | Msa0307420:CDS | 50.0% | |
| AATAGAGAGGCTGGAAGCTC+TGG | + | chr2_4:338833-338852 | Msa0307420:CDS | 50.0% | |
| !! | TCTGGCTAGCTTTGTGAACC+AGG | + | chr2_4:338851-338870 | Msa0307420:CDS | 50.0% |
| ACAGGCTGATCATCTTCGAC+AGG | + | chr2_4:339110-339129 | Msa0307420:intron | 50.0% | |
| CCATCGAGCAGTTTGACGTA+CGG | - | chr2_4:339166-339185 | None:intergenic | 50.0% | |
| GAAGACTATGCAGGTTCACG+AGG | - | chr2_4:339252-339271 | None:intergenic | 50.0% | |
| ! | GGGCTTATTGGCCTCACCAT+TGG | + | chr2_4:337701-337720 | Msa0307420:intron | 55.0% |
| GCAGCAGGACAACTCGTTGA+AGG | + | chr2_4:338783-338802 | Msa0307420:CDS | 55.0% | |
| CCGTACGTCAAACTGCTCGA+TGG | + | chr2_4:339163-339182 | Msa0307420:CDS | 55.0% | |
| TGCTCGATGGCTGCTTGCTT+TGG | + | chr2_4:339176-339195 | Msa0307420:CDS | 55.0% | |
| GCTCGATGGCTGCTTGCTTT+GGG | + | chr2_4:339177-339196 | Msa0307420:CDS | 55.0% | |
| TGCAGGTTCACGAGGACGAT+TGG | - | chr2_4:339244-339263 | None:intergenic | 55.0% | |
| ! | TAGCTGCTGGTCTGGCCCAA+TGG | - | chr2_4:337720-337739 | None:intergenic | 60.0% |
| AGCAACCGAGACCCTGGACA+TGG | - | chr2_4:339361-339380 | None:intergenic | 60.0% | |
| ATGTCCAGGGTCTCGGTTGC+TGG | + | chr2_4:339360-339379 | Msa0307420:three_prime_UTR | 60.0% | |
| TTTGCCAGCAACCGAGACCC+TGG | - | chr2_4:339367-339386 | None:intergenic | 60.0% | |
| ! | GCTGGTCTGGCCCAATGGTG+AGG | - | chr2_4:337715-337734 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 335649 | 339542 | 335649 | ID=Msa0307420;Name=Msa0307420 |
| chr2_4 | mRNA | 335649 | 339542 | 335649 | ID=Msa0307420-mRNA-1;Parent=Msa0307420;Name=Msa0307420-mRNA-1;_AED=0.18;_eAED=0.18;_QI=306|1|1|1|0.87|0.77|9|276|358 |
| chr2_4 | exon | 335649 | 335930 | 335649 | ID=Msa0307420-mRNA-1:exon:89;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 336083 | 336253 | 336083 | ID=Msa0307420-mRNA-1:exon:90;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 336418 | 336495 | 336418 | ID=Msa0307420-mRNA-1:exon:91;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 337042 | 337101 | 337042 | ID=Msa0307420-mRNA-1:exon:92;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 337178 | 337252 | 337178 | ID=Msa0307420-mRNA-1:exon:93;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 337357 | 337420 | 337357 | ID=Msa0307420-mRNA-1:exon:94;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 338275 | 338546 | 338275 | ID=Msa0307420-mRNA-1:exon:95;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 338645 | 338872 | 338645 | ID=Msa0307420-mRNA-1:exon:96;Parent=Msa0307420-mRNA-1 |
| chr2_4 | exon | 339114 | 339542 | 339114 | ID=Msa0307420-mRNA-1:exon:97;Parent=Msa0307420-mRNA-1 |
| chr2_4 | five_prime_UTR | 335649 | 335930 | 335649 | ID=Msa0307420-mRNA-1:five_prime_utr;Parent=Msa0307420-mRNA-1 |
| chr2_4 | five_prime_UTR | 336083 | 336106 | 336083 | ID=Msa0307420-mRNA-1:five_prime_utr;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 336107 | 336253 | 336107 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 336418 | 336495 | 336418 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 337042 | 337101 | 337042 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 337178 | 337252 | 337178 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 337357 | 337420 | 337357 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 338275 | 338546 | 338275 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 338645 | 338872 | 338645 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | CDS | 339114 | 339266 | 339114 | ID=Msa0307420-mRNA-1:cds;Parent=Msa0307420-mRNA-1 |
| chr2_4 | three_prime_UTR | 339267 | 339542 | 339267 | ID=Msa0307420-mRNA-1:three_prime_utr;Parent=Msa0307420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
