Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838630 | XP_003612270.1 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 4.14e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838630 | sp|Q38853|STR15_ARATH | 58.741 | 143 | 55 | 2 | 47 | 185 | 40 | 182 | 2.91e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838630 | B7FGV4 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 1.98e-128 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030740 | Msa0838630 | 0.801928 | 7.144259e-49 | -8.615850e-47 |
| Msa0098550 | Msa0838630 | 0.805170 | 1.518937e-49 | -8.615850e-47 |
| Msa0752830 | Msa0838630 | 0.801281 | 9.693837e-49 | -8.615850e-47 |
| Msa0758820 | Msa0838630 | 0.935101 | 1.437913e-96 | -8.615850e-47 |
| Msa0794130 | Msa0838630 | 0.806391 | 8.414705e-50 | -8.615850e-47 |
| Msa0838630 | Msa0838660 | 0.904194 | 1.583543e-79 | -8.615850e-47 |
| Msa0838630 | Msa0910650 | 0.800820 | 1.204699e-48 | -8.615850e-47 |
| Msa0838630 | Msa0930160 | 0.805224 | 1.480258e-49 | -8.615850e-47 |
| Msa0838630 | Msa0932000 | 0.806918 | 6.514520e-50 | -8.615850e-47 |
| Msa0838630 | Msa1156270 | 0.808472 | 3.046063e-50 | -8.615850e-47 |
| Msa0838630 | Msa1235040 | 0.804944 | 1.694170e-49 | -8.615850e-47 |
| Msa0838630 | Msa1286910 | 0.815991 | 6.959534e-52 | -8.615850e-47 |
| Msa0838630 | Msa1365210 | 0.812199 | 4.779906e-51 | -8.615850e-47 |
| Msa0146600 | Msa0838630 | 0.804969 | 1.673282e-49 | -8.615850e-47 |
| Msa0213510 | Msa0838630 | 0.813854 | 2.073578e-51 | -8.615850e-47 |
| Msa0237040 | Msa0838630 | 0.809243 | 2.083506e-50 | -8.615850e-47 |
| Msa0369780 | Msa0838630 | 0.804134 | 2.499272e-49 | -8.615850e-47 |
| Msa0462530 | Msa0838630 | 0.819563 | 1.087803e-52 | -8.615850e-47 |
| Msa0472270 | Msa0838630 | 0.820898 | 5.378374e-53 | -8.615850e-47 |
| Msa0472570 | Msa0838630 | 0.809549 | 1.791401e-50 | -8.615850e-47 |
| Msa0292860 | Msa0838630 | 0.863369 | 2.614188e-64 | -8.615850e-47 |
| Msa0330970 | Msa0838630 | 0.811499 | 6.788969e-51 | -8.615850e-47 |
| Msa0484220 | Msa0838630 | 0.927173 | 1.698632e-91 | -8.615850e-47 |
| Msa0509540 | Msa0838630 | 0.803382 | 3.579696e-49 | -8.615850e-47 |
| Msa0538140 | Msa0838630 | 0.803126 | 4.044900e-49 | -8.615850e-47 |
| Msa0545350 | Msa0838630 | 0.800489 | 1.406896e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838630 | MtrunA17_Chr5g0406281 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 3.80e-132 | 367 |
| Msa0838630 | MtrunA17_Chr5g0405631 | 49.123 | 114 | 56 | 1 | 74 | 185 | 31 | 144 | 1.42e-31 | 111 |
| Msa0838630 | MtrunA17_Chr2g0284621 | 42.857 | 112 | 63 | 1 | 75 | 185 | 12 | 123 | 5.82e-29 | 104 |
| Msa0838630 | MtrunA17_Chr8g0371681 | 45.833 | 120 | 59 | 2 | 61 | 178 | 5 | 120 | 7.33e-28 | 101 |
| Msa0838630 | MtrunA17_Chr4g0020691 | 39.200 | 125 | 71 | 2 | 62 | 185 | 3 | 123 | 9.04e-28 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0838630 | AT4G35770.1 | 58.741 | 143 | 55 | 2 | 47 | 185 | 40 | 182 | 2.95e-56 | 176 |
| Msa0838630 | AT5G66040.1 | 65.487 | 113 | 39 | 0 | 72 | 184 | 7 | 119 | 4.82e-51 | 160 |
| Msa0838630 | AT4G35770.2 | 57.143 | 119 | 47 | 2 | 47 | 161 | 40 | 158 | 4.54e-42 | 139 |
| Msa0838630 | AT4G35770.3 | 57.143 | 119 | 47 | 2 | 47 | 161 | 40 | 158 | 6.61e-42 | 139 |
| Msa0838630 | AT4G35770.5 | 56.436 | 101 | 40 | 2 | 47 | 143 | 40 | 140 | 1.86e-33 | 117 |
| Msa0838630 | AT5G66170.3 | 49.107 | 112 | 51 | 2 | 67 | 176 | 12 | 119 | 9.57e-31 | 109 |
| Msa0838630 | AT5G66170.2 | 48.246 | 114 | 51 | 3 | 67 | 176 | 12 | 121 | 9.10e-29 | 104 |
| Msa0838630 | AT2G21045.1 | 41.441 | 111 | 65 | 0 | 75 | 185 | 43 | 153 | 7.04e-27 | 100 |
| Msa0838630 | AT5G66170.1 | 50.515 | 97 | 42 | 2 | 67 | 161 | 12 | 104 | 5.53e-24 | 92.0 |
| Msa0838630 | AT5G66040.2 | 60.938 | 64 | 25 | 0 | 121 | 184 | 1 | 64 | 5.85e-23 | 87.4 |
| Msa0838630 | AT2G17850.1 | 40.385 | 104 | 60 | 1 | 75 | 176 | 34 | 137 | 1.08e-21 | 86.7 |
| Msa0838630 | AT4G35770.4 | 54.430 | 79 | 32 | 2 | 47 | 121 | 40 | 118 | 2.82e-21 | 84.7 |
| Msa0838630 | AT4G35770.6 | 54.430 | 79 | 32 | 2 | 47 | 121 | 40 | 118 | 2.82e-21 | 84.7 |
| Msa0838630 | AT2G17850.3 | 33.929 | 112 | 63 | 2 | 77 | 177 | 59 | 170 | 4.63e-16 | 72.8 |
| Msa0838630 | AT2G17850.2 | 39.326 | 89 | 52 | 1 | 75 | 161 | 34 | 122 | 2.63e-15 | 69.3 |
Find 62 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTCCCTTATTAAATT+TGG | 0.146508 | 5_4:-13074637 | None:intergenic |
| AAAATCTTCCAAATTTAATA+AGG | 0.178231 | 5_4:+13074629 | Msa0838630:CDS |
| TCTAGCTGGCCATAAGTATT+TGG | 0.181385 | 5_4:+13074877 | Msa0838630:CDS |
| ACCTTACATCCAAATACTTA+TGG | 0.228445 | 5_4:-13074886 | None:intergenic |
| GTGTGGTTTAAAGGGGAATT+TGG | 0.241136 | 5_4:+13074799 | Msa0838630:CDS |
| AAGCACGATGTGTGGTTTAA+AGG | 0.244947 | 5_4:+13074790 | Msa0838630:intron |
| TGTAACAATCACTTAATATC+TGG | 0.245032 | 5_4:-13074273 | None:intergenic |
| AGCATATCATGATTTCTTCT+TGG | 0.301007 | 5_4:-13076433 | None:intergenic |
| GATCATGTAAATGCATAAAA+AGG | 0.312692 | 5_4:+13076214 | Msa0838630:three_prime_UTR |
| TTATTTCTATATACAGCTTC+AGG | 0.321929 | 5_4:-13076176 | None:intergenic |
| AGCACGATGTGTGGTTTAAA+GGG | 0.328888 | 5_4:+13074791 | Msa0838630:intron |
| GATCCAACTTTGTACATATA+AGG | 0.335693 | 5_4:-13075242 | None:intergenic |
| TATGCTGCTTGGACTCAAAA+TGG | 0.348576 | 5_4:+13076129 | Msa0838630:CDS |
| ATGAAGTATCATGTAATTCT+TGG | 0.358857 | 5_4:+13076619 | Msa0838630:three_prime_UTR |
| AAATCTTCCAAATTTAATAA+GGG | 0.364373 | 5_4:+13074630 | Msa0838630:CDS |
| ATTAGAGTGTGACCTTGTTA+TGG | 0.398979 | 5_4:-13074469 | None:intergenic |
| GGGAATTTGGAGGAAGTTGT+TGG | 0.404121 | 5_4:+13074812 | Msa0838630:CDS |
| GCCATAAGTATTTGGATGTA+AGG | 0.427420 | 5_4:+13074885 | Msa0838630:CDS |
| GAAATAATAAGAATTCTGTT+TGG | 0.432163 | 5_4:+13076192 | Msa0838630:three_prime_UTR |
| TAGCTGGTGGTTATGCTGCT+TGG | 0.436274 | 5_4:+13076118 | Msa0838630:CDS |
| ACACGCACTGGCACTGAAGT+TGG | 0.437130 | 5_4:-13074839 | None:intergenic |
| ACCAGCTATGTCTGTGAGTC+CGG | 0.440393 | 5_4:-13076103 | None:intergenic |
| TCTGAAGAAACCCTCTCTCT+TGG | 0.444875 | 5_4:+13076309 | Msa0838630:three_prime_UTR |
| CCTTCATATTATTACTGTTG+TGG | 0.444925 | 5_4:-13076546 | None:intergenic |
| TACATATCAATAATTAATGA+AGG | 0.448491 | 5_4:+13076266 | Msa0838630:three_prime_UTR |
| AACCAAAGTGTTCCAACTTC+CGG | 0.448542 | 5_4:+13074673 | Msa0838630:CDS |
| GTGTTCTGCCGTAGAATTAG+AGG | 0.450733 | 5_4:-13074444 | None:intergenic |
| AGTGATTGTTACATATAAAG+AGG | 0.456852 | 5_4:+13074283 | Msa0838630:five_prime_UTR |
| TTCGAATTGAACTGTAAAGA+TGG | 0.461998 | 5_4:-13076358 | None:intergenic |
| TTAAATTCATTCAATTAATG+AGG | 0.463140 | 5_4:+13074169 | None:intergenic |
| TATATGTACAAAGTTGGATC+AGG | 0.472445 | 5_4:+13075245 | Msa0838630:CDS |
| TTTAATGCTGGACACGCTCC+TGG | 0.480736 | 5_4:+13075206 | Msa0838630:CDS |
| ACTTGCTACAGAACAATGAT+TGG | 0.496501 | 5_4:+13076152 | Msa0838630:exon |
| GTAACAATCACTTAATATCT+GGG | 0.502771 | 5_4:-13074272 | None:intergenic |
| ATACCTTATATGTACAAAGT+TGG | 0.502957 | 5_4:+13075239 | Msa0838630:CDS |
| TGCATTGTATAGGGGTTCAC+CGG | 0.511879 | 5_4:+13076084 | Msa0838630:intron |
| GAAATTATGAAGAAATTGAA+AGG | 0.514237 | 5_4:-13076524 | None:intergenic |
| GCTCACGAGCTTCTTCTAGC+TGG | 0.514761 | 5_4:+13074863 | Msa0838630:CDS |
| AGGGTTGTCAGCTTGGGAAA+AGG | 0.515357 | 5_4:+13075680 | Msa0838630:intron |
| AGCTCGTGAGCTACACGCAC+TGG | 0.517304 | 5_4:-13074851 | None:intergenic |
| TTCGAACCATGATCATTGAC+AGG | 0.518961 | 5_4:+13076375 | Msa0838630:three_prime_UTR |
| CCACAACAGTAATAATATGA+AGG | 0.529671 | 5_4:+13076546 | Msa0838630:three_prime_UTR |
| TACCGGAAGTTGGAACACTT+TGG | 0.532325 | 5_4:-13074675 | None:intergenic |
| ATTCACGTCCTCTAATTCTA+CGG | 0.536092 | 5_4:+13074436 | Msa0838630:CDS |
| ACCACGGAAGAGTTTAATGC+TGG | 0.548422 | 5_4:+13075194 | Msa0838630:CDS |
| TGGTTTAAAGGGGAATTTGG+AGG | 0.552343 | 5_4:+13074802 | Msa0838630:CDS |
| GCTTGGGAAAAGGTCTATGA+TGG | 0.555495 | 5_4:+13075690 | Msa0838630:CDS |
| AAATTATGAAGAAATTGAAA+GGG | 0.566952 | 5_4:-13076523 | None:intergenic |
| ACCGGACTCACAGACATAGC+TGG | 0.570324 | 5_4:+13076102 | Msa0838630:CDS |
| TAAGGTATGTTAATCGCACC+AGG | 0.610995 | 5_4:-13075224 | None:intergenic |
| GCAAGCGGCGGAGACATCAA+AGG | 0.618010 | 5_4:-13074409 | None:intergenic |
| GCACGATGTGTGGTTTAAAG+GGG | 0.620601 | 5_4:+13074792 | Msa0838630:intron |
| ATTGTGATTGTGCAGGACCA+CGG | 0.621639 | 5_4:+13075178 | Msa0838630:intron |
| TCCAGCATTAAACTCTTCCG+TGG | 0.640037 | 5_4:-13075195 | None:intergenic |
| ACACATCAAGCCAAGAGAGA+GGG | 0.640638 | 5_4:-13076319 | None:intergenic |
| GGCAGAACACGACCATAACA+AGG | 0.641310 | 5_4:+13074457 | Msa0838630:CDS |
| AACACATCAAGCCAAGAGAG+AGG | 0.646052 | 5_4:-13076320 | None:intergenic |
| AAATACTATGAAATGCAAAG+TGG | 0.646380 | 5_4:-13074348 | None:intergenic |
| TCGAATTGAACTGTAAAGAT+GGG | 0.648236 | 5_4:-13076357 | None:intergenic |
| AGGACGTGAATGAAAGCAAG+CGG | 0.673997 | 5_4:-13074424 | None:intergenic |
| ACGTGAATGAAAGCAAGCGG+CGG | 0.698419 | 5_4:-13074421 | None:intergenic |
| GGACTCACAGACATAGCTGG+TGG | 0.717723 | 5_4:+13076105 | Msa0838630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCTTCCAAATTTAATA+AGG | + | chr5_4:13074629-13074648 | Msa0838630:CDS | 15.0% |
| !! | AAATCTTCCAAATTTAATAA+GGG | + | chr5_4:13074630-13074649 | Msa0838630:CDS | 15.0% |
| !! | CAAAACATTAGTATATTAAT+CGG | - | chr5_4:13075109-13075128 | None:intergenic | 15.0% |
| !! | ATATGAATAGATTAGAAAAA+AGG | - | chr5_4:13075458-13075477 | None:intergenic | 15.0% |
| !! | TACATATCAATAATTAATGA+AGG | + | chr5_4:13076266-13076285 | Msa0838630:three_prime_UTR | 15.0% |
| !! | AAATTATGAAGAAATTGAAA+GGG | - | chr5_4:13076526-13076545 | None:intergenic | 15.0% |
| !! | AGTATATAGATATAGAAGAA+TGG | - | chr5_4:13074499-13074518 | None:intergenic | 20.0% |
| !! | TAAAGTAACCAATTTAATCA+AGG | + | chr5_4:13074908-13074927 | Msa0838630:intron | 20.0% |
| !!! | CATAATAGTTTTGTAGTTTT+AGG | - | chr5_4:13074982-13075001 | None:intergenic | 20.0% |
| !!! | CGATTAATATACTAATGTTT+TGG | + | chr5_4:13075107-13075126 | Msa0838630:intron | 20.0% |
| !! | TTGTAATATTCTTAGTGTTT+AGG | + | chr5_4:13075296-13075315 | Msa0838630:intron | 20.0% |
| !! | TAAGAGATATATAATACTCT+TGG | + | chr5_4:13075347-13075366 | Msa0838630:intron | 20.0% |
| !!! | AGTTGTTTTGATTAATCTAA+TGG | - | chr5_4:13075373-13075392 | None:intergenic | 20.0% |
| !! | AAATAACATACAAAATCTCA+TGG | - | chr5_4:13075615-13075634 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTTACACTTTC+AGG | - | chr5_4:13075942-13075961 | None:intergenic | 20.0% |
| !!! | TTTTCATCAATAATTAGTCT+TGG | + | chr5_4:13075974-13075993 | Msa0838630:intron | 20.0% |
| !!! | TTAACTTCTTGAAAATTTTG+AGG | + | chr5_4:13076034-13076053 | Msa0838630:intron | 20.0% |
| !! | GAAATAATAAGAATTCTGTT+TGG | + | chr5_4:13076192-13076211 | Msa0838630:three_prime_UTR | 20.0% |
| !! | GAAATTATGAAGAAATTGAA+AGG | - | chr5_4:13076527-13076546 | None:intergenic | 20.0% |
| ! | GTAACAATCACTTAATATCT+GGG | - | chr5_4:13074275-13074294 | None:intergenic | 25.0% |
| ! | TGTAACAATCACTTAATATC+TGG | - | chr5_4:13074276-13074295 | None:intergenic | 25.0% |
| ! | AGTGATTGTTACATATAAAG+AGG | + | chr5_4:13074283-13074302 | Msa0838630:five_prime_UTR | 25.0% |
| !!! | CTTTTTTATGAAATGCTTTG+AGG | - | chr5_4:13074324-13074343 | None:intergenic | 25.0% |
| ! | AAATACTATGAAATGCAAAG+TGG | - | chr5_4:13074351-13074370 | None:intergenic | 25.0% |
| ! | TCTATGTCCCTTATTAAATT+TGG | - | chr5_4:13074640-13074659 | None:intergenic | 25.0% |
| !!! | AATGTTTTGGAATTGTGATT+TGG | + | chr5_4:13075120-13075139 | Msa0838630:intron | 25.0% |
| ! | ATACCTTATATGTACAAAGT+TGG | + | chr5_4:13075239-13075258 | Msa0838630:CDS | 25.0% |
| ! | TAGATTAATCAAAACAACTG+AGG | + | chr5_4:13075374-13075393 | Msa0838630:intron | 25.0% |
| ! | AGATCAAAAAGAGATCAAAT+TGG | + | chr5_4:13075418-13075437 | Msa0838630:intron | 25.0% |
| ! | ATTAGAAAAAAGGACACTAA+TGG | - | chr5_4:13075448-13075467 | None:intergenic | 25.0% |
| ! | CATTAGCAGATGAATTAATT+TGG | - | chr5_4:13075647-13075666 | None:intergenic | 25.0% |
| ! | TATTGATGAAAAAAGTAGCA+CGG | - | chr5_4:13075966-13075985 | None:intergenic | 25.0% |
| !! | GTTAATAAAGTATCTATCAC+TGG | - | chr5_4:13076019-13076038 | None:intergenic | 25.0% |
| !!! | ACAATTGTTTTGCATTGTAT+AGG | + | chr5_4:13076074-13076093 | Msa0838630:intron | 25.0% |
| !!! | CAATTGTTTTGCATTGTATA+GGG | + | chr5_4:13076075-13076094 | Msa0838630:intron | 25.0% |
| !!! | AATTGTTTTGCATTGTATAG+GGG | + | chr5_4:13076076-13076095 | Msa0838630:intron | 25.0% |
| !!! | TTATTTCTATATACAGCTTC+AGG | - | chr5_4:13076179-13076198 | None:intergenic | 25.0% |
| ! | GATCATGTAAATGCATAAAA+AGG | + | chr5_4:13076214-13076233 | Msa0838630:three_prime_UTR | 25.0% |
| ! | ATGTAAATGCATAAAAAGGA+AGG | + | chr5_4:13076218-13076237 | Msa0838630:three_prime_UTR | 25.0% |
| !! | ATGAAGTATCATGTAATTCT+TGG | + | chr5_4:13076619-13076638 | Msa0838630:three_prime_UTR | 25.0% |
| !! | TCAACACTTTTTACACTTAC+CGG | - | chr5_4:13074695-13074714 | None:intergenic | 30.0% |
| ACCTTACATCCAAATACTTA+TGG | - | chr5_4:13074889-13074908 | None:intergenic | 30.0% | |
| CATTGAAGCCTTGATTAAAT+TGG | - | chr5_4:13074919-13074938 | None:intergenic | 30.0% | |
| ACAATCACAATAAACAGGTA+TGG | - | chr5_4:13075169-13075188 | None:intergenic | 30.0% | |
| GATCCAACTTTGTACATATA+AGG | - | chr5_4:13075245-13075264 | None:intergenic | 30.0% | |
| TATATGTACAAAGTTGGATC+AGG | + | chr5_4:13075245-13075264 | Msa0838630:CDS | 30.0% | |
| AATTATGTGTTCATGCATAC+AGG | + | chr5_4:13075496-13075515 | Msa0838630:intron | 30.0% | |
| ATTATGTGTTCATGCATACA+GGG | + | chr5_4:13075497-13075516 | Msa0838630:intron | 30.0% | |
| ! | GAACAGCAATTTTGTTAAAG+AGG | + | chr5_4:13075528-13075547 | Msa0838630:CDS | 30.0% |
| ! | ATCTTCTTTTCTAAACTGTG+AGG | - | chr5_4:13075557-13075576 | None:intergenic | 30.0% |
| !! | CTAATGTTATTGCTTTTGCA+GGG | + | chr5_4:13075661-13075680 | Msa0838630:intron | 30.0% |
| AACTCAAACAAGAAGTGAAA+GGG | - | chr5_4:13075880-13075899 | None:intergenic | 30.0% | |
| AAACTCAAACAAGAAGTGAA+AGG | - | chr5_4:13075881-13075900 | None:intergenic | 30.0% | |
| AAGTATCTATCACTGGAAAT+TGG | - | chr5_4:13076012-13076031 | None:intergenic | 30.0% | |
| TCGAATTGAACTGTAAAGAT+GGG | - | chr5_4:13076360-13076379 | None:intergenic | 30.0% | |
| TTCGAATTGAACTGTAAAGA+TGG | - | chr5_4:13076361-13076380 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCTGTCAATGATCA+TGG | - | chr5_4:13076384-13076403 | None:intergenic | 30.0% |
| AGCATATCATGATTTCTTCT+TGG | - | chr5_4:13076436-13076455 | None:intergenic | 30.0% | |
| CCTTCATATTATTACTGTTG+TGG | - | chr5_4:13076549-13076568 | None:intergenic | 30.0% | |
| CCACAACAGTAATAATATGA+AGG | + | chr5_4:13076546-13076565 | Msa0838630:three_prime_UTR | 30.0% | |
| ATTCACGTCCTCTAATTCTA+CGG | + | chr5_4:13074436-13074455 | Msa0838630:CDS | 35.0% | |
| ATTAGAGTGTGACCTTGTTA+TGG | - | chr5_4:13074472-13074491 | None:intergenic | 35.0% | |
| ! | TTTTTACACTTACCGGAAGT+TGG | - | chr5_4:13074688-13074707 | None:intergenic | 35.0% |
| !!! | TTTTTTCAAAGCACGATGTG+TGG | + | chr5_4:13074782-13074801 | Msa0838630:intron | 35.0% |
| GCCATAAGTATTTGGATGTA+AGG | + | chr5_4:13074885-13074904 | Msa0838630:CDS | 35.0% | |
| CAACTGAGGTTTGATAGAAT+AGG | + | chr5_4:13075388-13075407 | Msa0838630:intron | 35.0% | |
| ACATACAAAATCTCATGGTG+CGG | - | chr5_4:13075610-13075629 | None:intergenic | 35.0% | |
| !! | GCTAATGTTATTGCTTTTGC+AGG | + | chr5_4:13075660-13075679 | Msa0838630:intron | 35.0% |
| ACTCAAACAAGAAGTGAAAG+GGG | - | chr5_4:13075879-13075898 | None:intergenic | 35.0% | |
| TAGCACTCAACTAAAATGCT+AGG | - | chr5_4:13075907-13075926 | None:intergenic | 35.0% | |
| !!! | TAGCATTTTAGTTGAGTGCT+AGG | + | chr5_4:13075906-13075925 | Msa0838630:intron | 35.0% |
| !!! | TTTTGAGGTCAAAGCTTGTT+TGG | + | chr5_4:13076049-13076068 | Msa0838630:intron | 35.0% |
| ! | ACTTGCTACAGAACAATGAT+TGG | + | chr5_4:13076152-13076171 | Msa0838630:exon | 35.0% |
| AATGCATAAAAAGGAAGGAG+TGG | + | chr5_4:13076223-13076242 | Msa0838630:three_prime_UTR | 35.0% | |
| ! | AACCAAAGTGTTCCAACTTC+CGG | + | chr5_4:13074673-13074692 | Msa0838630:CDS | 40.0% |
| AAGCACGATGTGTGGTTTAA+AGG | + | chr5_4:13074790-13074809 | Msa0838630:intron | 40.0% | |
| AGCACGATGTGTGGTTTAAA+GGG | + | chr5_4:13074791-13074810 | Msa0838630:intron | 40.0% | |
| GTGTGGTTTAAAGGGGAATT+TGG | + | chr5_4:13074799-13074818 | Msa0838630:CDS | 40.0% | |
| TGGTTTAAAGGGGAATTTGG+AGG | + | chr5_4:13074802-13074821 | Msa0838630:CDS | 40.0% | |
| TCTAGCTGGCCATAAGTATT+TGG | + | chr5_4:13074877-13074896 | Msa0838630:CDS | 40.0% | |
| ! | GTATGGAAAGTCGTGAGTTT+TGG | - | chr5_4:13075152-13075171 | None:intergenic | 40.0% |
| CCTGCACAATCACAATAAAC+AGG | - | chr5_4:13075174-13075193 | None:intergenic | 40.0% | |
| CCTGTTTATTGTGATTGTGC+AGG | + | chr5_4:13075171-13075190 | Msa0838630:intron | 40.0% | |
| TAAGGTATGTTAATCGCACC+AGG | - | chr5_4:13075227-13075246 | None:intergenic | 40.0% | |
| CTCAAACAAGAAGTGAAAGG+GGG | - | chr5_4:13075878-13075897 | None:intergenic | 40.0% | |
| ! | TATGCTGCTTGGACTCAAAA+TGG | + | chr5_4:13076129-13076148 | Msa0838630:CDS | 40.0% |
| CATAAAAAGGAAGGAGTGGA+TGG | + | chr5_4:13076227-13076246 | Msa0838630:three_prime_UTR | 40.0% | |
| TTCGAACCATGATCATTGAC+AGG | + | chr5_4:13076375-13076394 | Msa0838630:three_prime_UTR | 40.0% | |
| AGGACGTGAATGAAAGCAAG+CGG | - | chr5_4:13074427-13074446 | None:intergenic | 45.0% | |
| GTGTTCTGCCGTAGAATTAG+AGG | - | chr5_4:13074447-13074466 | None:intergenic | 45.0% | |
| TACCGGAAGTTGGAACACTT+TGG | - | chr5_4:13074678-13074697 | None:intergenic | 45.0% | |
| GCACGATGTGTGGTTTAAAG+GGG | + | chr5_4:13074792-13074811 | Msa0838630:intron | 45.0% | |
| GGGAATTTGGAGGAAGTTGT+TGG | + | chr5_4:13074812-13074831 | Msa0838630:CDS | 45.0% | |
| TGGACTGAAAGTCGAGTACA+CGG | + | chr5_4:13075018-13075037 | Msa0838630:intron | 45.0% | |
| ATTGTGATTGTGCAGGACCA+CGG | + | chr5_4:13075178-13075197 | Msa0838630:intron | 45.0% | |
| ACCACGGAAGAGTTTAATGC+TGG | + | chr5_4:13075194-13075213 | Msa0838630:CDS | 45.0% | |
| TCCAGCATTAAACTCTTCCG+TGG | - | chr5_4:13075198-13075217 | None:intergenic | 45.0% | |
| ! | TTTTGCAGGGTTGTCAGCTT+GGG | + | chr5_4:13075674-13075693 | Msa0838630:intron | 45.0% |
| GCTTGGGAAAAGGTCTATGA+TGG | + | chr5_4:13075690-13075709 | Msa0838630:CDS | 45.0% | |
| TGCATTGTATAGGGGTTCAC+CGG | + | chr5_4:13076084-13076103 | Msa0838630:intron | 45.0% | |
| TCTGAAGAAACCCTCTCTCT+TGG | + | chr5_4:13076309-13076328 | Msa0838630:three_prime_UTR | 45.0% | |
| ACACATCAAGCCAAGAGAGA+GGG | - | chr5_4:13076322-13076341 | None:intergenic | 45.0% | |
| AACACATCAAGCCAAGAGAG+AGG | - | chr5_4:13076323-13076342 | None:intergenic | 45.0% | |
| !!! | TATGTAATTTTTAAATTTAT+TGG | + | chr5_4:13074998-13075017 | Msa0838630:intron | 5.0% |
| ACGTGAATGAAAGCAAGCGG+CGG | - | chr5_4:13074424-13074443 | None:intergenic | 50.0% | |
| GGCAGAACACGACCATAACA+AGG | + | chr5_4:13074457-13074476 | Msa0838630:CDS | 50.0% | |
| TTTAATGCTGGACACGCTCC+TGG | + | chr5_4:13075206-13075225 | Msa0838630:CDS | 50.0% | |
| AAAATCTCATGGTGCGGCGA+AGG | - | chr5_4:13075604-13075623 | None:intergenic | 50.0% | |
| ! | CTTTTGCAGGGTTGTCAGCT+TGG | + | chr5_4:13075673-13075692 | Msa0838630:intron | 50.0% |
| AGGGTTGTCAGCTTGGGAAA+AGG | + | chr5_4:13075680-13075699 | Msa0838630:intron | 50.0% | |
| ACCAGCTATGTCTGTGAGTC+CGG | - | chr5_4:13076106-13076125 | None:intergenic | 50.0% | |
| TAGCTGGTGGTTATGCTGCT+TGG | + | chr5_4:13076118-13076137 | Msa0838630:CDS | 50.0% | |
| ! | ACACGCACTGGCACTGAAGT+TGG | - | chr5_4:13074842-13074861 | None:intergenic | 55.0% |
| GCTCACGAGCTTCTTCTAGC+TGG | + | chr5_4:13074863-13074882 | Msa0838630:CDS | 55.0% | |
| ACCGGACTCACAGACATAGC+TGG | + | chr5_4:13076102-13076121 | Msa0838630:CDS | 55.0% | |
| GGACTCACAGACATAGCTGG+TGG | + | chr5_4:13076105-13076124 | Msa0838630:CDS | 55.0% | |
| GCAAGCGGCGGAGACATCAA+AGG | - | chr5_4:13074412-13074431 | None:intergenic | 60.0% | |
| AGCTCGTGAGCTACACGCAC+TGG | - | chr5_4:13074854-13074873 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 13074171 | 13076662 | 13074171 | ID=Msa0838630;Name=Msa0838630 |
| chr5_4 | mRNA | 13074171 | 13076662 | 13074171 | ID=Msa0838630-mRNA-1;Parent=Msa0838630;Name=Msa0838630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=216|1|1|1|1|1|7|492|185 |
| chr5_4 | exon | 13074171 | 13074478 | 13074171 | ID=Msa0838630-mRNA-1:exon:5785;Parent=Msa0838630-mRNA-1 |
| chr5_4 | exon | 13074617 | 13074694 | 13074617 | ID=Msa0838630-mRNA-1:exon:5786;Parent=Msa0838630-mRNA-1 |
| chr5_4 | exon | 13074793 | 13074906 | 13074793 | ID=Msa0838630-mRNA-1:exon:5787;Parent=Msa0838630-mRNA-1 |
| chr5_4 | exon | 13075193 | 13075266 | 13075193 | ID=Msa0838630-mRNA-1:exon:5788;Parent=Msa0838630-mRNA-1 |
| chr5_4 | exon | 13075518 | 13075588 | 13075518 | ID=Msa0838630-mRNA-1:exon:5789;Parent=Msa0838630-mRNA-1 |
| chr5_4 | exon | 13075682 | 13075735 | 13075682 | ID=Msa0838630-mRNA-1:exon:5790;Parent=Msa0838630-mRNA-1 |
| chr5_4 | exon | 13076096 | 13076662 | 13076096 | ID=Msa0838630-mRNA-1:exon:5791;Parent=Msa0838630-mRNA-1 |
| chr5_4 | five_prime_UTR | 13074171 | 13074386 | 13074171 | ID=Msa0838630-mRNA-1:five_prime_utr;Parent=Msa0838630-mRNA-1 |
| chr5_4 | CDS | 13074387 | 13074478 | 13074387 | ID=Msa0838630-mRNA-1:cds;Parent=Msa0838630-mRNA-1 |
| chr5_4 | CDS | 13074617 | 13074694 | 13074617 | ID=Msa0838630-mRNA-1:cds;Parent=Msa0838630-mRNA-1 |
| chr5_4 | CDS | 13074793 | 13074906 | 13074793 | ID=Msa0838630-mRNA-1:cds;Parent=Msa0838630-mRNA-1 |
| chr5_4 | CDS | 13075193 | 13075266 | 13075193 | ID=Msa0838630-mRNA-1:cds;Parent=Msa0838630-mRNA-1 |
| chr5_4 | CDS | 13075518 | 13075588 | 13075518 | ID=Msa0838630-mRNA-1:cds;Parent=Msa0838630-mRNA-1 |
| chr5_4 | CDS | 13075682 | 13075735 | 13075682 | ID=Msa0838630-mRNA-1:cds;Parent=Msa0838630-mRNA-1 |
| chr5_4 | CDS | 13076096 | 13076170 | 13076096 | ID=Msa0838630-mRNA-1:cds;Parent=Msa0838630-mRNA-1 |
| chr5_4 | three_prime_UTR | 13076171 | 13076662 | 13076171 | ID=Msa0838630-mRNA-1:three_prime_utr;Parent=Msa0838630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
