AlfalfaGEDB | Msa0462530

M. sativa cultivar zhongmu-4 / Msa0462530

KEGG: K00830
GO: GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00266.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462530	XP_003600159.1	95.012	401	8	1	1	389	1	401	0.0	773

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462530	sp\|Q56YA5\|SGAT_ARATH	83.042	401	56	1	1	389	1	401	0.0	696

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462530	G7J013	95.012	401	8	1	1	389	1	401	0.0	773

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001040	Msa0462530	0.803346	3.642606e-49	-8.615850e-47
Msa0001420	Msa0462530	0.814576	1.435706e-51	-8.615850e-47
Msa0001510	Msa0462530	0.879509	1.175892e-69	-8.615850e-47
Msa0001540	Msa0462530	0.830977	2.166704e-55	-8.615850e-47
Msa0001550	Msa0462530	0.809513	1.822912e-50	-8.615850e-47
Msa0002110	Msa0462530	0.870897	1.031097e-66	-8.615850e-47
Msa0002690	Msa0462530	0.910275	2.247436e-82	-8.615850e-47
Msa0002700	Msa0462530	0.906374	1.587872e-80	-8.615850e-47
Msa0003340	Msa0462530	0.876809	1.039409e-68	-8.615850e-47
Msa0004180	Msa0462530	0.912114	2.820988e-83	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462530	MtrunA17_Chr3g0095111	95.012	401	8	1	1	389	1	401	0.0	773
Msa0462530	MtrunA17_Chr5g0442131	78.304	401	75	1	1	389	1	401	0.0	653
Msa0462530	MtrunA17_Chr5g0445301	72.941	170	33	2	233	389	7	176	8.50e-81	245
Msa0462530	MtrunA17_Chr5g0428161	75.806	124	30	0	163	286	6	129	3.31e-64	201
Msa0462530	MtrunA17_Chr5g0428171	79.365	63	13	0	28	90	1	63	1.28e-26	101
Msa0462530	MtrunA17_Chr5g0445291	72.500	40	11	0	81	120	1	40	1.71e-15	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0462530	AT2G13360.3	83.042	401	56	1	1	389	1	401	696
Msa0462530	AT2G13360.1	83.042	401	56	1	1	389	1	401	696
Msa0462530	AT2G13360.2	83.042	401	56	1	1	389	1	401	696

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Find 142 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACAATTTGAGCTT+AGG	0.398290	3_3:+61582406	Msa0462530:CDS
AAAGAAAACTCGAAGTGATT+TGG	0.339222	3_3:-61581744	None:intergenic
AAAGATACAATACGATCTCC+AGG	0.572618	3_3:-61580758	None:intergenic
AAAGCCCTTTCCCTTCCTAC+TGG	0.518469	3_3:+61581671	Msa0462530:CDS
AAATCCAATACCAGTAGGAA+GGG	0.577438	3_3:-61581681	None:intergenic
AAATGTAGGGACAAGAAAGT+AGG	0.507102	3_3:+61578419	Msa0462530:five_prime_UTR
AAATTTCAAGCAAGGGAAGA+TGG	0.441336	3_3:+61579570	Msa0462530:exon
AACGATAGTCCTCGTTGTTT+CGG	0.283890	3_3:-61579675	None:intergenic
AACTGGTGTCACCAATAACT+TGG	0.495827	3_3:+61580958	Msa0462530:CDS
AACTGTAATCTGAGCCACTG+AGG	0.721812	3_3:+61578466	Msa0462530:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTATACAAAGAAAAAGCTT+TGG	+	chr3_3:61578765-61578784	Msa0462530:intron	30.0%
TTACCAAGCATAAAAAAAGG+TGG	-	chr3_3:61578964-61578983	None:intergenic	30.0%
AATTGGAAGTGATGCTTAAT+TGG	-	chr3_3:61578992-61579011	None:intergenic	30.0%
ACATAATTCAGTGTAATCGT+AGG	-	chr3_3:61579341-61579360	None:intergenic	30.0%
AGAGTTGCTTGAATTTAAAG+AGG	+	chr3_3:61579544-61579563	Msa0462530:five_prime_UTR	30.0%
CATACAAACATTGAACAACT+TGG	-	chr3_3:61579820-61579839	None:intergenic	30.0%
GAAATATTACTTAGGTGGTA+AGG	+	chr3_3:61581163-61581182	Msa0462530:intron	30.0%
AAAGAAAACTCGAAGTGATT+TGG	-	chr3_3:61581747-61581766	None:intergenic	30.0%
GACTTGACAATATTATTGCA+AGG	+	chr3_3:61581879-61581898	Msa0462530:CDS	30.0%
GTTAAGTCAATGAATCTGAT+AGG	+	chr3_3:61582238-61582257	Msa0462530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	61578405	61583805	61578405	ID=Msa0462530;Name=Msa0462530
chr3_3	mRNA	61578405	61583805	61578405	ID=Msa0462530-mRNA-1;Parent=Msa0462530;Name=Msa0462530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=356\|0.8\|0.83\|1\|0.4\|0.66\|6\|438\|389
chr3_3	exon	61578405	61578688	61578405	ID=Msa0462530-mRNA-1:exon:12984;Parent=Msa0462530-mRNA-1
chr3_3	exon	61579517	61579793	61579517	ID=Msa0462530-mRNA-1:exon:12985;Parent=Msa0462530-mRNA-1
chr3_3	exon	61580717	61581001	61580717	ID=Msa0462530-mRNA-1:exon:12986;Parent=Msa0462530-mRNA-1
chr3_3	exon	61581561	61581927	61581561	ID=Msa0462530-mRNA-1:exon:12987;Parent=Msa0462530-mRNA-1
chr3_3	exon	61582282	61582456	61582282	ID=Msa0462530-mRNA-1:exon:12988;Parent=Msa0462530-mRNA-1
chr3_3	exon	61583230	61583805	61583230	ID=Msa0462530-mRNA-1:exon:12989;Parent=Msa0462530-mRNA-1
chr3_3	five_prime_UTR	61578405	61578688	61578405	ID=Msa0462530-mRNA-1:five_prime_utr;Parent=Msa0462530-mRNA-1
chr3_3	five_prime_UTR	61579517	61579588	61579517	ID=Msa0462530-mRNA-1:five_prime_utr;Parent=Msa0462530-mRNA-1
chr3_3	CDS	61579589	61579793	61579589	ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3	CDS	61580717	61581001	61580717	ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3	CDS	61581561	61581927	61581561	ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3	CDS	61582282	61582456	61582282	ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3	CDS	61583230	61583367	61583230	ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3	three_prime_UTR	61583368	61583805	61583368	ID=Msa0462530-mRNA-1:three_prime_utr;Parent=Msa0462530-mRNA-1

Gene Sequence

>Msa0462530

ATGGATTATGTTAATGGACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCTGCAATTCCAGCTCTGACAAAAACTCTACTTGAAGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGTACCGGTGCTTGGGAGAGTGCTTTGACAAACACATTGTCGCCTGGAGATCGTATTGTATCTTTCGTGATTGGCCAATTCAGTTTGCTTTGGGTTGATCAGCAGCAACGCCTTAAATTTAATGTCGATGTTGTGGAAAGTGAATGGGGCTGTGGTGCTGATCTCGACATTCTAGAATCAAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGAGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATATACTCCTTCCATTCAGCTTCTTTATGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGACAATATTATTGCAAGGCACAACCGTTTAGGTACAGCTACCAGACTTGCTGTGGAGGCATGGGGTTTGAAGAATTGCACACAAAAGGAAGAGTGGTTCAGTGACACAGTGACTGCTGTTGTTGTTCCTCCTTACATTGACGGTGCTGAAGTTGTTAGAAGGGCATGGAAAAGATACAATTTGAGCTTAGGTTTGGGACTAAACAAAGTTGCTGGAAAGTTGCAACTATTGGGTTGTCTTGCTGGTGTGGAGATGATACTCAGAGATGTTGGTTACCCAGTAAAATTGGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACAATATTCCTCTCATTCCTTCAAGGATTTGA

Protein sequence

>Msa0462530

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGCGADLDILESKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLDNIIARHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDGAEVVRRAWKRYNLSLGLGLNKVAGKLQLLGCLAGVEMILRDVGYPVKLGSGVAAASAYLQNNIPLIPSRI*