AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0462530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462530 MtrunA17_Chr3g0095111 95.012 401 8 1 1 389 1 401 0.0 773
Msa0462530 MtrunA17_Chr5g0442131 78.304 401 75 1 1 389 1 401 0.0 653
Msa0462530 MtrunA17_Chr5g0445301 72.941 170 33 2 233 389 7 176 8.50e-81 245
Msa0462530 MtrunA17_Chr5g0428161 75.806 124 30 0 163 286 6 129 3.31e-64 201
Msa0462530 MtrunA17_Chr5g0428171 79.365 63 13 0 28 90 1 63 1.28e-26 101
Msa0462530 MtrunA17_Chr5g0445291 72.500 40 11 0 81 120 1 40 1.71e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0462530 AT2G13360.3 83.042 401 56 1 1 389 1 401 0.0 696
Msa0462530 AT2G13360.1 83.042 401 56 1 1 389 1 401 0.0 696
Msa0462530 AT2G13360.2 83.042 401 56 1 1 389 1 401 0.0 696

Find 142 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTGCAACAAATATT+AGG 0.133896 3_3:+61583613 Msa0462530:three_prime_UTR
CCTTCCATTCAGCTTCTTTA+TGG 0.134580 3_3:+61581821 Msa0462530:CDS
CAACATCGACATTAAATTTA+AGG 0.143214 3_3:-61580826 None:intergenic
CAACTATTGGGTTGTCTTGC+TGG 0.175642 3_3:+61583233 Msa0462530:CDS
TGTTGGTTACCCAGTAAAAT+TGG 0.196012 3_3:+61583277 Msa0462530:CDS
TTTGAAGCTTCAATGGCTTT+AGG 0.239169 3_3:-61581716 None:intergenic
TCTAACTGTGGCCAAGTTAT+TGG 0.247414 3_3:-61580969 None:intergenic
CTTTCCCTTCCTACTGGTAT+TGG 0.249614 3_3:+61581677 Msa0462530:CDS
TTTACCTATAAAGAAGAATT+TGG 0.267936 3_3:-61583580 None:intergenic
GACACCAAATTCTTCTTTAT+AGG 0.274537 3_3:+61583576 Msa0462530:three_prime_UTR
TCTACAAGATGGGAACTTAT+TGG 0.275033 3_3:+61581789 Msa0462530:CDS
TTGAAGCTTCAATGGCTTTA+GGG 0.275233 3_3:-61581715 None:intergenic
TTCTCTTGCAACAAATATTA+GGG 0.281198 3_3:+61583614 Msa0462530:three_prime_UTR
AACGATAGTCCTCGTTGTTT+CGG 0.283890 3_3:-61579675 None:intergenic
GGGAAGATGGATTATGTTAA+TGG 0.310016 3_3:+61579583 Msa0462530:exon
TTCCCATCTTGTAGAACTTC+AGG 0.327105 3_3:-61581781 None:intergenic
CCAGCCCTCCTCCTTGTTGA+TGG 0.337800 3_3:+61581575 Msa0462530:CDS
AAAGAAAACTCGAAGTGATT+TGG 0.339222 3_3:-61581744 None:intergenic
TTGGCCAATTCAGTTTGCTT+TGG 0.339533 3_3:+61580786 Msa0462530:CDS
TGGCCAATTCAGTTTGCTTT+GGG 0.347985 3_3:+61580787 Msa0462530:CDS
CGTATTGTATCTTTCGTGAT+TGG 0.350211 3_3:+61580767 Msa0462530:CDS
TCCTACTGGTATTGGATTTG+TGG 0.355399 3_3:+61581685 Msa0462530:CDS
TTTGTCAGAGCTGGAATTGC+AGG 0.357939 3_3:-61579700 None:intergenic
AGCTGAATGGAAGGAGTATA+TGG 0.363954 3_3:-61581812 None:intergenic
AGAAACCATCTCTTTGTTCC+AGG 0.369723 3_3:+61579613 Msa0462530:CDS
ATTGCAAGGCACAACCGTTT+AGG 0.371084 3_3:+61581893 Msa0462530:CDS
TCCATAAAAGTCTCAAATAA+AGG 0.371861 3_3:-61583555 None:intergenic
TACAATTTGAGCTTAGGTTT+GGG 0.376409 3_3:+61582412 Msa0462530:CDS
TAAAGTATGCTAAGAGCATT+TGG 0.377691 3_3:+61578616 Msa0462530:five_prime_UTR
ATATTCCTCTCATTCCTTCA+AGG 0.379866 3_3:+61583339 Msa0462530:CDS
TGATTCTGCACACACTATAA+AGG 0.387046 3_3:+61580907 Msa0462530:CDS
TTGGTTCAGGTACCGGTGCT+TGG 0.388560 3_3:+61580708 Msa0462530:intron
ATACAATTTGAGCTTAGGTT+TGG 0.393748 3_3:+61582411 Msa0462530:CDS
CGTCTTCAAGAGAGTTCAAA+AGG 0.393874 3_3:-61583453 None:intergenic
AAAAGATACAATTTGAGCTT+AGG 0.398290 3_3:+61582406 Msa0462530:CDS
CAACCCAAAGCAAACTGAAT+TGG 0.402256 3_3:-61580790 None:intergenic
GGAGTAGATGTGGCCATAAC+TGG 0.407058 3_3:+61581641 Msa0462530:CDS
ACAAAGAGATGGTTTCTTCC+TGG 0.409728 3_3:-61579607 None:intergenic
TCAGGTAGTTTGGTGAAGTA+TGG 0.413909 3_3:-61578665 None:intergenic
TTGGGACTAAACAAAGTTGC+TGG 0.415993 3_3:+61582430 Msa0462530:CDS
TGAGTGTACCTCAGGTAGTT+TGG 0.417771 3_3:-61578675 None:intergenic
ACCTGGTCCGGTATGTTAAC+CGG 0.419216 3_3:-61579637 None:intergenic
TGGTTCAGGTACCGGTGCTT+GGG 0.420179 3_3:+61580709 Msa0462530:intron
TCCGGTATGTTAACCGGCCC+TGG 0.422439 3_3:-61579631 None:intergenic
CTTCAAGGATTTGAGTTACA+TGG 0.423165 3_3:+61583354 Msa0462530:exon
CGATTTCCGTATGGACGAAT+GGG 0.433716 3_3:+61581619 Msa0462530:CDS
TTTGAAGAATTGCACACAAA+AGG 0.438210 3_3:+61582303 Msa0462530:CDS
CATGTAACTCAAATCCTTGA+AGG 0.438228 3_3:-61583353 None:intergenic
AAATTTCAAGCAAGGGAAGA+TGG 0.441336 3_3:+61579570 Msa0462530:exon
GTTGTTCCTCCTTACATTGA+CGG 0.446006 3_3:+61582358 Msa0462530:CDS
GTTGGTTACCCAGTAAAATT+GGG 0.446538 3_3:+61583278 Msa0462530:CDS
TATATAGGTGGTTCTTTGGT+GGG 0.449993 3_3:+61579510 Msa0462530:intron
TCTCCCTCTTATCTACTACT+TGG 0.450916 3_3:+61578529 Msa0462530:five_prime_UTR
TTGTCCAAGTAGTAGATAAG+AGG 0.452694 3_3:-61578533 None:intergenic
GGGACAAGAAAGTAGGAGAA+TGG 0.462118 3_3:+61578426 Msa0462530:five_prime_UTR
TAAATTTAATGTCGATGTTG+TGG 0.462439 3_3:+61580829 Msa0462530:CDS
ACGGAAATCGAGAGCACAAA+TGG 0.462702 3_3:-61581606 None:intergenic
ACGGTGCTGAAGTTGTTAGA+AGG 0.464067 3_3:+61582377 Msa0462530:CDS
AGAGTTGCTTGAATTTAAAG+AGG 0.469062 3_3:+61579544 Msa0462530:five_prime_UTR
CCAGTAGTAGGGATAAGAAA+TGG 0.469745 3_3:-61579772 None:intergenic
ACCTGGTAGCTGTACCTAAA+CGG 0.470045 3_3:-61581907 None:intergenic
CGTACAACAATACCAGTAGT+AGG 0.470380 3_3:-61579784 None:intergenic
ATATCATAAATGAGCAGAAA+AGG 0.470564 3_3:-61583395 None:intergenic
CCATTTCTTATCCCTACTAC+TGG 0.470967 3_3:+61579772 Msa0462530:CDS
CAGACTTGCTGTGGAGGCAT+GGG 0.471086 3_3:+61582279 Msa0462530:intron
TTATATAGGTGGTTCTTTGG+TGG 0.471535 3_3:+61579509 Msa0462530:intron
AGATTATCTACAAAATCTAT+TGG 0.474293 3_3:-61583793 None:intergenic
GCCACAGTTAGAAAACTTCT+CGG 0.483622 3_3:+61580980 Msa0462530:CDS
GGCTTTCTGAGAACCAGTTA+TGG 0.484234 3_3:-61581654 None:intergenic
CTTCATCCATTCACAGCCTC+AGG 0.485436 3_3:+61578496 Msa0462530:five_prime_UTR
CCATCTCTTTGTTCCAGGGC+CGG 0.485720 3_3:+61579618 Msa0462530:CDS
ATTGGGTTGTCTTGCTGGTG+TGG 0.485766 3_3:+61583238 Msa0462530:CDS
TCCAGGGCCGGTTAACATAC+CGG 0.489689 3_3:+61579630 Msa0462530:CDS
AACTGGTGTCACCAATAACT+TGG 0.495827 3_3:+61580958 Msa0462530:CDS
CCATCAACAAGGAGGAGGGC+TGG 0.501743 3_3:-61581575 None:intergenic
GAGGTTGAAATTTCAAGCAA+GGG 0.502541 3_3:+61579563 Msa0462530:five_prime_UTR
CGATGTTGTGGAAAGTGAAT+GGG 0.504080 3_3:+61580841 Msa0462530:CDS
ACTTCAGCACCGTCAATGTA+AGG 0.505077 3_3:-61582367 None:intergenic
AAATGTAGGGACAAGAAAGT+AGG 0.507102 3_3:+61578419 Msa0462530:five_prime_UTR
TCGATTTCCGTATGGACGAA+TGG 0.508249 3_3:+61581618 Msa0462530:CDS
ACAGACTTGCTGTGGAGGCA+TGG 0.510945 3_3:+61582278 Msa0462530:intron
AAAGCCCTTTCCCTTCCTAC+TGG 0.518469 3_3:+61581671 Msa0462530:CDS
ATAGCACGAATGACCTGGTC+CGG 0.521295 3_3:-61579649 None:intergenic
ACTAAACAAAGTTGCTGGAA+AGG 0.522582 3_3:+61582435 Msa0462530:CDS
TTGACAAACACATTGTCGCC+TGG 0.523761 3_3:+61580740 Msa0462530:CDS
TCGATGTTGTGGAAAGTGAA+TGG 0.525669 3_3:+61580840 Msa0462530:CDS
AAGACCATAAAGAAGCTGAA+TGG 0.527183 3_3:-61581825 None:intergenic
CAAGGAGGAGGGCTGGATGT+TGG 0.529269 3_3:-61581568 None:intergenic
AGAGGTTGAAATTTCAAGCA+AGG 0.531683 3_3:+61579562 Msa0462530:five_prime_UTR
CTACTCCCCATTCGTCCATA+CGG 0.535292 3_3:-61581625 None:intergenic
GCCGGTTAACATACCGGACC+AGG 0.546518 3_3:+61579636 Msa0462530:CDS
TCTACTACTTGGACAAGACT+TGG 0.547258 3_3:+61578540 Msa0462530:five_prime_UTR
TTGTGCTCTCGATTTCCGTA+TGG 0.548771 3_3:+61581610 Msa0462530:CDS
GTGGAAAGTGAATGGGGCTG+TGG 0.549273 3_3:+61580848 Msa0462530:CDS
ACCGTTTAGGTACAGCTACC+AGG 0.550599 3_3:+61581906 Msa0462530:CDS
CCATAAAGAAGCTGAATGGA+AGG 0.555686 3_3:-61581821 None:intergenic
CAAATCCAATACCAGTAGGA+AGG 0.557167 3_3:-61581682 None:intergenic
AAGCATCCTGAGGCTGTGAA+TGG 0.557469 3_3:-61578502 None:intergenic
CTGAAGTTGTTAGAAGGGCA+TGG 0.559985 3_3:+61582383 Msa0462530:CDS
CTACCTGAAGTTCTACAAGA+TGG 0.564948 3_3:+61581778 Msa0462530:CDS
CGGTGCTGAAGTTGTTAGAA+GGG 0.565477 3_3:+61582378 Msa0462530:CDS
TGTCCAAGTAGTAGATAAGA+GGG 0.566128 3_3:-61578532 None:intergenic
TACCCAGTAAAATTGGGAAG+TGG 0.568031 3_3:+61583284 Msa0462530:CDS
CAATACCAGTAGGAAGGGAA+AGG 0.568672 3_3:-61581676 None:intergenic
AAAGATACAATACGATCTCC+AGG 0.572618 3_3:-61580758 None:intergenic
GGACGAATGGGGAGTAGATG+TGG 0.573975 3_3:+61581631 Msa0462530:CDS
GTTCATAATGAGACTGCAAC+TGG 0.575174 3_3:+61580941 Msa0462530:CDS
GTTTGGTGAAGTATGGCAGA+AGG 0.575524 3_3:-61578658 None:intergenic
TACCTGAAGTTCTACAAGAT+GGG 0.576311 3_3:+61581779 Msa0462530:CDS
ATTGTTCTGTAAGTATGCAC+TGG 0.576598 3_3:-61583318 None:intergenic
AAATCCAATACCAGTAGGAA+GGG 0.577438 3_3:-61581681 None:intergenic
GACTTGACAATATTATTGCA+AGG 0.578019 3_3:+61581879 Msa0462530:CDS
AATACCAGTAGGAAGGGAAA+GGG 0.578211 3_3:-61581675 None:intergenic
ATGGATTATGTTAATGGACC+AGG 0.579109 3_3:+61579589 Msa0462530:CDS
GGCTCATAGCACGAATGACC+TGG 0.583959 3_3:-61579654 None:intergenic
GAAACCATCTCTTTGTTCCA+GGG 0.585783 3_3:+61579614 Msa0462530:CDS
CAAATCCTTGAAGGAATGAG+AGG 0.585795 3_3:-61583344 None:intergenic
ACACTCCATCAACAAGGAGG+AGG 0.586969 3_3:-61581580 None:intergenic
ATGCTAAGAGCATTTGGCAG+TGG 0.588337 3_3:+61578622 Msa0462530:five_prime_UTR
TCTGTGTGTGTAATTAGTCA+TGG 0.603223 3_3:+61583710 Msa0462530:three_prime_UTR
TGGTAAATACAGACTTGCTG+TGG 0.606808 3_3:+61582270 Msa0462530:intron
GTACAACAATACCAGTAGTA+GGG 0.606832 3_3:-61579783 None:intergenic
CACTCCATCAACAAGGAGGA+GGG 0.606889 3_3:-61581579 None:intergenic
AGACTTGCTGTGGAGGCATG+GGG 0.607099 3_3:+61582280 Msa0462530:intron
GTCTTCAAGAGAGTTCAAAA+GGG 0.607588 3_3:-61583452 None:intergenic
TAAATACAGACTTGCTGTGG+AGG 0.610487 3_3:+61582273 Msa0462530:intron
CCGGCCCTGGAACAAAGAGA+TGG 0.617441 3_3:-61579618 None:intergenic
CAAAGCACTCTCCCAAGCAC+CGG 0.620119 3_3:-61580720 None:intergenic
GAGGCTGTGAATGGATGAAG+TGG 0.621141 3_3:-61578493 None:intergenic
GAGATGATACTCAGAGATGT+TGG 0.631831 3_3:+61583260 Msa0462530:CDS
ATTGCACACAAAAGGAAGAG+TGG 0.645383 3_3:+61582311 Msa0462530:CDS
TGCTATGAGCCGAAACAACG+AGG 0.669595 3_3:+61579666 Msa0462530:CDS
ATACTTCACCAAACTACCTG+AGG 0.670987 3_3:+61578667 Msa0462530:five_prime_UTR
GATGTTGTGGAAAGTGAATG+GGG 0.683154 3_3:+61580842 Msa0462530:CDS
GGGAGAAAATAAGCATCCTG+AGG 0.691767 3_3:-61578512 None:intergenic
GATTTCCGTATGGACGAATG+GGG 0.694111 3_3:+61581620 Msa0462530:CDS
TGGATGACACTCCATCAACA+AGG 0.697918 3_3:-61581586 None:intergenic
ACCACAAATCCAATACCAGT+AGG 0.700818 3_3:-61581686 None:intergenic
TCAGCACCGTCAATGTAAGG+AGG 0.705659 3_3:-61582364 None:intergenic
AACTGTAATCTGAGCCACTG+AGG 0.721812 3_3:+61578466 Msa0462530:five_prime_UTR
GATGAAGTGGAACACCTCAG+TGG 0.725587 3_3:-61578480 None:intergenic
ATGACACTCCATCAACAAGG+AGG 0.767226 3_3:-61581583 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAATCAAAAAATTTA+AGG - chr3_3:61578571-61578590 None:intergenic 10.0%
!! ATATAAATGATTTAATATGA+TGG + chr3_3:61578925-61578944 Msa0462530:intron 10.0%
!!! ATATCCTTTTTATAAATTAT+TGG + chr3_3:61581266-61581285 Msa0462530:intron 10.0%
!! AAAAAACTAGAAATAAATGT+AGG + chr3_3:61578405-61578424 Msa0462530:five_prime_UTR 15.0%
!! AAAAACTAGAAATAAATGTA+GGG + chr3_3:61578406-61578425 Msa0462530:five_prime_UTR 15.0%
!! TTAATAACTTTCTGAATTAT+TGG - chr3_3:61579469-61579488 None:intergenic 15.0%
!! AATGCCAATAATTTATAAAA+AGG - chr3_3:61581273-61581292 None:intergenic 15.0%
!!! TCAAAACAAAATTTTGTTTA+TGG - chr3_3:61581405-61581424 None:intergenic 15.0%
!!! TTTTTATTGTCTTTATGAAA+TGG + chr3_3:61581511-61581530 Msa0462530:intron 15.0%
!! CAAAAAAAAAGATTATTGTT+TGG + chr3_3:61581997-61582016 Msa0462530:intron 15.0%
!!! TTATAATAGTTGAAACTTTT+TGG + chr3_3:61582216-61582235 Msa0462530:intron 15.0%
!!! AATTTGAAGTTTAAAAATCA+AGG + chr3_3:61582760-61582779 Msa0462530:intron 15.0%
!! TTATAAATATTTACGTGTAT+TGG - chr3_3:61582821-61582840 None:intergenic 15.0%
!!! AGAATCAAAAAATTTAAGGT+GGG - chr3_3:61578567-61578586 None:intergenic 20.0%
!! AAGAATCAAAAAATTTAAGG+TGG - chr3_3:61578568-61578587 None:intergenic 20.0%
!!! TATATGCTTTTTTTTTGCTT+TGG + chr3_3:61578730-61578749 Msa0462530:intron 20.0%
!! ATATTAAGATGTTACAACAA+AGG - chr3_3:61578909-61578928 None:intergenic 20.0%
!!! ATTTTACCAAGCATAAAAAA+AGG - chr3_3:61578967-61578986 None:intergenic 20.0%
!! AGAGATACTAATACTAAAAT+TGG - chr3_3:61579009-61579028 None:intergenic 20.0%
!! TGAAACGGTAAATAAATATA+GGG - chr3_3:61579096-61579115 None:intergenic 20.0%
!! ATGAAACGGTAAATAAATAT+AGG - chr3_3:61579097-61579116 None:intergenic 20.0%
!!! TTATAGTTTTTTTTACCAAG+TGG + chr3_3:61579193-61579212 Msa0462530:intron 20.0%
!!! CTTTGTGATGTTTTTTATAT+AGG + chr3_3:61579495-61579514 Msa0462530:intron 20.0%
!! TTGAATAATTCAATACAACT+AGG - chr3_3:61580121-61580140 None:intergenic 20.0%
!!! ATTATTTTCATAAGCTATCT+TGG - chr3_3:61580248-61580267 None:intergenic 20.0%
!!! TGTTTTATTTTGCATGTATT+TGG + chr3_3:61580579-61580598 Msa0462530:intron 20.0%
!!! ATTTACGTTTTATCTTTATC+AGG + chr3_3:61580647-61580666 Msa0462530:intron 20.0%
!! TAGTTTCAGAAATATTACTT+AGG + chr3_3:61581155-61581174 Msa0462530:intron 20.0%
!!! TTTTTGCTAGAAATGTTTTT+AGG - chr3_3:61581983-61582002 None:intergenic 20.0%
!!! TTGTTGTTAACTATATGTAT+CGG - chr3_3:61582573-61582592 None:intergenic 20.0%
!! AAGTATAACTTGAACATATT+AGG - chr3_3:61582725-61582744 None:intergenic 20.0%
!!! TCTTTTCCTAAAATACTTAT+CGG + chr3_3:61583090-61583109 Msa0462530:intron 20.0%
!!! TTAATACCGATAAGTATTTT+AGG - chr3_3:61583099-61583118 None:intergenic 20.0%
!! TAAAGAATTAGCAATTTCAA+TGG - chr3_3:61583196-61583215 None:intergenic 20.0%
!! TTTACCTATAAAGAAGAATT+TGG - chr3_3:61583583-61583602 None:intergenic 20.0%
!!! AATTTTAAAGCATGACAATT+TGG + chr3_3:61583766-61583785 Msa0462530:three_prime_UTR 20.0%
!! GAATCAAAAAATTTAAGGTG+GGG - chr3_3:61578566-61578585 None:intergenic 25.0%
! AGTATTAGTATCTCTCATAT+AGG + chr3_3:61579014-61579033 Msa0462530:intron 25.0%
!!! CTTTTGTTTTTGTCATGAAA+CGG - chr3_3:61579111-61579130 None:intergenic 25.0%
! AAAAAAACTATAAGTAGCTG+AGG - chr3_3:61579186-61579205 None:intergenic 25.0%
! ATAGTTGTTCTATTATTCCA+TGG - chr3_3:61579420-61579439 None:intergenic 25.0%
!!! TGTGATGTTTTTTATATAGG+TGG + chr3_3:61579498-61579517 Msa0462530:intron 25.0%
!! TTTTTATATAGGTGGTTCTT+TGG + chr3_3:61579506-61579525 Msa0462530:intron 25.0%
! ATTAAGCTGAAAACAACTTA+TGG - chr3_3:61579930-61579949 None:intergenic 25.0%
! AATAAACTGAAAACAGCTTA+TGG - chr3_3:61580213-61580232 None:intergenic 25.0%
! CTAAGTCATGTATGTAAATA+AGG - chr3_3:61580437-61580456 None:intergenic 25.0%
! CCAAAAGTGAATGAAATATA+TGG - chr3_3:61580518-61580537 None:intergenic 25.0%
!! CCATATATTTCATTCACTTT+TGG + chr3_3:61580515-61580534 Msa0462530:intron 25.0%
!! GTATTAAATTGTGTGTGTTT+TGG + chr3_3:61580547-61580566 Msa0462530:intron 25.0%
!!! TTTATTTTGCATGTATTTGG+AGG + chr3_3:61580582-61580601 Msa0462530:intron 25.0%
! ATTTGGAGGTTACAAAATAA+TGG + chr3_3:61580596-61580615 Msa0462530:intron 25.0%
!! GTTTTATCTTTATCAGGATA+TGG + chr3_3:61580653-61580672 Msa0462530:intron 25.0%
!! TGTAATAACGTTTTTGCATT+TGG + chr3_3:61580689-61580708 Msa0462530:intron 25.0%
! CAACATCGACATTAAATTTA+AGG - chr3_3:61580829-61580848 None:intergenic 25.0%
! TAAATTTAATGTCGATGTTG+TGG + chr3_3:61580829-61580848 Msa0462530:CDS 25.0%
! AACAAAAGTAATATTTGCGA+AGG - chr3_3:61581119-61581138 None:intergenic 25.0%
! TTTCAGAAATATTACTTAGG+TGG + chr3_3:61581158-61581177 Msa0462530:intron 25.0%
! TTACATATCTCGATAATCAT+TGG - chr3_3:61581432-61581451 None:intergenic 25.0%
! TTGTACTAAATAATGTATCG+TGG - chr3_3:61582125-61582144 None:intergenic 25.0%
! AAAAGATACAATTTGAGCTT+AGG + chr3_3:61582406-61582425 Msa0462530:CDS 25.0%
!! AACTTGTTCTTAATTCTTCT+TGG + chr3_3:61582916-61582935 Msa0462530:intron 25.0%
! GCATTATGAGAATAATATCA+AGG + chr3_3:61583161-61583180 Msa0462530:intron 25.0%
!!! TTTTTTTCAGTTGCAACTAT+TGG + chr3_3:61583220-61583239 Msa0462530:intron 25.0%
!!! TTTTTTCAGTTGCAACTATT+GGG + chr3_3:61583221-61583240 Msa0462530:intron 25.0%
! ATATCATAAATGAGCAGAAA+AGG - chr3_3:61583398-61583417 None:intergenic 25.0%
!!! ACCTTTATTTGAGACTTTTA+TGG + chr3_3:61583554-61583573 Msa0462530:three_prime_UTR 25.0%
! TCCATAAAAGTCTCAAATAA+AGG - chr3_3:61583558-61583577 None:intergenic 25.0%
! TTCTCTTGCAACAAATATTA+GGG + chr3_3:61583614-61583633 Msa0462530:three_prime_UTR 25.0%
!! TAAAGTATGCTAAGAGCATT+TGG + chr3_3:61578616-61578635 Msa0462530:five_prime_UTR 30.0%
!! CCAAAGCTTTTTCTTTGTAT+AGG - chr3_3:61578768-61578787 None:intergenic 30.0%
CCTATACAAAGAAAAAGCTT+TGG + chr3_3:61578765-61578784 Msa0462530:intron 30.0%
! GTTTTTATGACTTCCACTTT+TGG + chr3_3:61578857-61578876 Msa0462530:intron 30.0%
!!! TTACCACCTTTTTTTATGCT+TGG + chr3_3:61578958-61578977 Msa0462530:intron 30.0%
TTACCAAGCATAAAAAAAGG+TGG - chr3_3:61578964-61578983 None:intergenic 30.0%
AATTGGAAGTGATGCTTAAT+TGG - chr3_3:61578992-61579011 None:intergenic 30.0%
! AGGATTTAGTCTGAACTTTT+TGG + chr3_3:61579034-61579053 Msa0462530:intron 30.0%
! TCAGTCACAAATTTTTACCA+TGG + chr3_3:61579275-61579294 Msa0462530:intron 30.0%
ACATAATTCAGTGTAATCGT+AGG - chr3_3:61579341-61579360 None:intergenic 30.0%
AGAGTTGCTTGAATTTAAAG+AGG + chr3_3:61579544-61579563 Msa0462530:five_prime_UTR 30.0%
!! AAGATTTTCAAGACTACTAC+TGG + chr3_3:61579745-61579764 Msa0462530:CDS 30.0%
CATACAAACATTGAACAACT+TGG - chr3_3:61579820-61579839 None:intergenic 30.0%
! TTGGATAGAATCAGATTTTG+TGG - chr3_3:61581034-61581053 None:intergenic 30.0%
GAAATATTACTTAGGTGGTA+AGG + chr3_3:61581163-61581182 Msa0462530:intron 30.0%
! ATAAGTATGCATCTGAAACT+TGG + chr3_3:61581331-61581350 Msa0462530:intron 30.0%
AAAGAAAACTCGAAGTGATT+TGG - chr3_3:61581747-61581766 None:intergenic 30.0%
GACTTGACAATATTATTGCA+AGG + chr3_3:61581879-61581898 Msa0462530:CDS 30.0%
GTTAAGTCAATGAATCTGAT+AGG + chr3_3:61582238-61582257 Msa0462530:intron 30.0%
TTTGAAGAATTGCACACAAA+AGG + chr3_3:61582303-61582322 Msa0462530:CDS 30.0%
ATACAATTTGAGCTTAGGTT+TGG + chr3_3:61582411-61582430 Msa0462530:CDS 30.0%
TACAATTTGAGCTTAGGTTT+GGG + chr3_3:61582412-61582431 Msa0462530:CDS 30.0%
TTGTTAACTATATGTATCGG+TGG - chr3_3:61582570-61582589 None:intergenic 30.0%
! TGTGACAAAACACATTGTTT+TGG + chr3_3:61582674-61582693 Msa0462530:intron 30.0%
!!! AAACACATTGTTTTGGCTTA+CGG + chr3_3:61582681-61582700 Msa0462530:intron 30.0%
AAAATCAAGGTTCATGTCAA+AGG + chr3_3:61582773-61582792 Msa0462530:intron 30.0%
TGAATCATTCTTTCTCTCTA+TGG + chr3_3:61582868-61582887 Msa0462530:intron 30.0%
ATTCTTTCTCTCTATGGTAA+GGG + chr3_3:61582874-61582893 Msa0462530:intron 30.0%
! ACAAAAAGTACATCTAAACC+AGG - chr3_3:61582970-61582989 None:intergenic 30.0%
!!! TAGCATTGTACTTTTGAAGT+AGG - chr3_3:61582993-61583012 None:intergenic 30.0%
AGAATTAGCAATTTCAATGG+TGG - chr3_3:61583193-61583212 None:intergenic 30.0%
GACACCAAATTCTTCTTTAT+AGG + chr3_3:61583576-61583595 Msa0462530:three_prime_UTR 30.0%
CTTCTCTTGCAACAAATATT+AGG + chr3_3:61583613-61583632 Msa0462530:three_prime_UTR 30.0%
AAATGTAGGGACAAGAAAGT+AGG + chr3_3:61578419-61578438 Msa0462530:five_prime_UTR 35.0%
TGTCCAAGTAGTAGATAAGA+GGG - chr3_3:61578535-61578554 None:intergenic 35.0%
TTGTCCAAGTAGTAGATAAG+AGG - chr3_3:61578536-61578555 None:intergenic 35.0%
TTCATTAGCATGACCAAAAG+TGG - chr3_3:61578873-61578892 None:intergenic 35.0%
! ACAACAAAGGTTGAGTGTTT+TGG - chr3_3:61578896-61578915 None:intergenic 35.0%
TTATATAGGTGGTTCTTTGG+TGG + chr3_3:61579509-61579528 Msa0462530:intron 35.0%
TATATAGGTGGTTCTTTGGT+GGG + chr3_3:61579510-61579529 Msa0462530:intron 35.0%
AGAGGTTGAAATTTCAAGCA+AGG + chr3_3:61579562-61579581 Msa0462530:five_prime_UTR 35.0%
GAGGTTGAAATTTCAAGCAA+GGG + chr3_3:61579563-61579582 Msa0462530:five_prime_UTR 35.0%
AAATTTCAAGCAAGGGAAGA+TGG + chr3_3:61579570-61579589 Msa0462530:exon 35.0%
!! GGGAAGATGGATTATGTTAA+TGG + chr3_3:61579583-61579602 Msa0462530:exon 35.0%
! ATGGATTATGTTAATGGACC+AGG + chr3_3:61579589-61579608 Msa0462530:CDS 35.0%
GTACAACAATACCAGTAGTA+GGG - chr3_3:61579786-61579805 None:intergenic 35.0%
! TTGAACAACTTGGTTAGTCA+AGG - chr3_3:61579810-61579829 None:intergenic 35.0%
CTTAATTCCATAATCTCTCC+AGG + chr3_3:61579944-61579963 Msa0462530:intron 35.0%
AAGTTGTTTATCGAAAGACG+CGG + chr3_3:61580093-61580112 Msa0462530:intron 35.0%
! GGTCTAATTGATTCTCTGTT+TGG - chr3_3:61580364-61580383 None:intergenic 35.0%
ACAAAATAATGGCCTGAGAT+TGG + chr3_3:61580607-61580626 Msa0462530:intron 35.0%
!! AACGTTTTTGCATTTGGTTC+AGG + chr3_3:61580695-61580714 Msa0462530:intron 35.0%
AAAGATACAATACGATCTCC+AGG - chr3_3:61580761-61580780 None:intergenic 35.0%
CGTATTGTATCTTTCGTGAT+TGG + chr3_3:61580767-61580786 Msa0462530:CDS 35.0%
TGATTCTGCACACACTATAA+AGG + chr3_3:61580907-61580926 Msa0462530:CDS 35.0%
ATCAAGAAATCAACATGCGA+AGG - chr3_3:61581210-61581229 None:intergenic 35.0%
TTCACTTGCAACGTCATAAT+TGG + chr3_3:61581370-61581389 Msa0462530:intron 35.0%
AAATCCAATACCAGTAGGAA+GGG - chr3_3:61581684-61581703 None:intergenic 35.0%
! TTGAAGCTTCAATGGCTTTA+GGG - chr3_3:61581718-61581737 None:intergenic 35.0%
! TTTGAAGCTTCAATGGCTTT+AGG - chr3_3:61581719-61581738 None:intergenic 35.0%
!! CACTTCGAGTTTTCTTTGAT+TGG + chr3_3:61581750-61581769 Msa0462530:CDS 35.0%
TACCTGAAGTTCTACAAGAT+GGG + chr3_3:61581779-61581798 Msa0462530:CDS 35.0%
TCTACAAGATGGGAACTTAT+TGG + chr3_3:61581789-61581808 Msa0462530:CDS 35.0%
AAGACCATAAAGAAGCTGAA+TGG - chr3_3:61581828-61581847 None:intergenic 35.0%
! AGCTCTTGATCTGATTTTTG+AGG + chr3_3:61581853-61581872 Msa0462530:CDS 35.0%
!! CTTGATCTGATTTTTGAGGA+AGG + chr3_3:61581857-61581876 Msa0462530:CDS 35.0%
GTTCAATATCTGTTATGCGA+TGG - chr3_3:61582088-61582107 None:intergenic 35.0%
AATGTATCGTGGAACAATAG+CGG - chr3_3:61582114-61582133 None:intergenic 35.0%
!! TTTAGTACAAAGCGTTGTAG+AGG + chr3_3:61582135-61582154 Msa0462530:intron 35.0%
TAACTCAGTATCTTCAAACG+CGG - chr3_3:61582187-61582206 None:intergenic 35.0%
AAGTCAATGAATCTGATAGG+TGG + chr3_3:61582241-61582260 Msa0462530:intron 35.0%
AATCTGATAGGTGGTCAATA+TGG + chr3_3:61582250-61582269 Msa0462530:intron 35.0%
ACTAAACAAAGTTGCTGGAA+AGG + chr3_3:61582435-61582454 Msa0462530:CDS 35.0%
! GTTTTCAGAATTGGACATCT+TGG + chr3_3:61582457-61582476 Msa0462530:intron 35.0%
CACATAGCTATCAAGAGTTT+AGG - chr3_3:61582509-61582528 None:intergenic 35.0%
! CTAAACTCTTGATAGCTATG+TGG + chr3_3:61582507-61582526 Msa0462530:intron 35.0%
! TTAACTATATGTATCGGTGG+CGG - chr3_3:61582567-61582586 None:intergenic 35.0%
TTACGTTTCAGTGTTGTATC+AGG + chr3_3:61582612-61582631 Msa0462530:intron 35.0%
TACGTTTCAGTGTTGTATCA+GGG + chr3_3:61582613-61582632 Msa0462530:intron 35.0%
CATATTAGGAAGACCCTAAA+AGG - chr3_3:61582711-61582730 None:intergenic 35.0%
CATTCTTTCTCTCTATGGTA+AGG + chr3_3:61582873-61582892 Msa0462530:intron 35.0%
CCAGGATGGTTAGAATTTAA+AGG - chr3_3:61582952-61582971 None:intergenic 35.0%
CCTTTAAATTCTAACCATCC+TGG + chr3_3:61582949-61582968 Msa0462530:intron 35.0%
AAAGTACATCTAAACCAGGA+TGG - chr3_3:61582966-61582985 None:intergenic 35.0%
! TGTTGGTTACCCAGTAAAAT+TGG + chr3_3:61583277-61583296 Msa0462530:CDS 35.0%
GTTGGTTACCCAGTAAAATT+GGG + chr3_3:61583278-61583297 Msa0462530:CDS 35.0%
ATTGTTCTGTAAGTATGCAC+TGG - chr3_3:61583321-61583340 None:intergenic 35.0%
ATATTCCTCTCATTCCTTCA+AGG + chr3_3:61583339-61583358 Msa0462530:CDS 35.0%
CATGTAACTCAAATCCTTGA+AGG - chr3_3:61583356-61583375 None:intergenic 35.0%
! CTTCAAGGATTTGAGTTACA+TGG + chr3_3:61583354-61583373 Msa0462530:exon 35.0%
GTCTTCAAGAGAGTTCAAAA+GGG - chr3_3:61583455-61583474 None:intergenic 35.0%
TCTGTGTGTGTAATTAGTCA+TGG + chr3_3:61583710-61583729 Msa0462530:three_prime_UTR 35.0%
TCTCCCTCTTATCTACTACT+TGG + chr3_3:61578529-61578548 Msa0462530:five_prime_UTR 40.0%
TCTACTACTTGGACAAGACT+TGG + chr3_3:61578540-61578559 Msa0462530:five_prime_UTR 40.0%
! TCAGGTAGTTTGGTGAAGTA+TGG - chr3_3:61578668-61578687 None:intergenic 40.0%
ATACTTCACCAAACTACCTG+AGG + chr3_3:61578667-61578686 Msa0462530:five_prime_UTR 40.0%
!! TTGGTGTTTAAAGAGTGCCT+CGG + chr3_3:61579053-61579072 Msa0462530:intron 40.0%
AAACTCACTTTGACACCACT+TGG - chr3_3:61579211-61579230 None:intergenic 40.0%
TACCATGGAACTATGAAGCA+CGG + chr3_3:61579290-61579309 Msa0462530:intron 40.0%
GTGTATGTGCTTCATAACCA+TGG + chr3_3:61579400-61579419 Msa0462530:intron 40.0%
ACAAAGAGATGGTTTCTTCC+TGG - chr3_3:61579610-61579629 None:intergenic 40.0%
AGAAACCATCTCTTTGTTCC+AGG + chr3_3:61579613-61579632 Msa0462530:CDS 40.0%
GAAACCATCTCTTTGTTCCA+GGG + chr3_3:61579614-61579633 Msa0462530:CDS 40.0%
AACGATAGTCCTCGTTGTTT+CGG - chr3_3:61579678-61579697 None:intergenic 40.0%
! AGTAGAGTTTTTGTCAGAGC+TGG - chr3_3:61579712-61579731 None:intergenic 40.0%
CCAGTAGTAGGGATAAGAAA+TGG - chr3_3:61579775-61579794 None:intergenic 40.0%
CCATTTCTTATCCCTACTAC+TGG + chr3_3:61579772-61579791 Msa0462530:CDS 40.0%
CGTACAACAATACCAGTAGT+AGG - chr3_3:61579787-61579806 None:intergenic 40.0%
AAGCTATCCTGGAGAGATTA+TGG - chr3_3:61579954-61579973 None:intergenic 40.0%
AATCTCTCCAGGATAGCTTA+TGG + chr3_3:61579955-61579974 Msa0462530:intron 40.0%
ACTCTTTCCATAAGCTATCC+TGG - chr3_3:61579965-61579984 None:intergenic 40.0%
AGTTGTTTATCGAAAGACGC+GGG + chr3_3:61580094-61580113 Msa0462530:intron 40.0%
CAGAGAATCAATTAGACCAC+TGG + chr3_3:61580366-61580385 Msa0462530:intron 40.0%
GAGCATCATCCTGATTACTA+AGG - chr3_3:61580396-61580415 None:intergenic 40.0%
! TTTGCATTTGGTTCAGGTAC+CGG + chr3_3:61580701-61580720 Msa0462530:intron 40.0%
! TTGGCCAATTCAGTTTGCTT+TGG + chr3_3:61580786-61580805 Msa0462530:CDS 40.0%
! TGGCCAATTCAGTTTGCTTT+GGG + chr3_3:61580787-61580806 Msa0462530:CDS 40.0%
CAACCCAAAGCAAACTGAAT+TGG - chr3_3:61580793-61580812 None:intergenic 40.0%
TCGATGTTGTGGAAAGTGAA+TGG + chr3_3:61580840-61580859 Msa0462530:CDS 40.0%
CGATGTTGTGGAAAGTGAAT+GGG + chr3_3:61580841-61580860 Msa0462530:CDS 40.0%
GATGTTGTGGAAAGTGAATG+GGG + chr3_3:61580842-61580861 Msa0462530:CDS 40.0%
GTTCATAATGAGACTGCAAC+TGG + chr3_3:61580941-61580960 Msa0462530:CDS 40.0%
!! AACTGGTGTCACCAATAACT+TGG + chr3_3:61580958-61580977 Msa0462530:CDS 40.0%
TCTAACTGTGGCCAAGTTAT+TGG - chr3_3:61580972-61580991 None:intergenic 40.0%
GCCACAGTTAGAAAACTTCT+CGG + chr3_3:61580980-61580999 Msa0462530:CDS 40.0%
! ACCGAGAAGTTTTCTAACTG+TGG - chr3_3:61580984-61581003 None:intergenic 40.0%
ATGTGTGTACAATGACAGCT+TGG - chr3_3:61581053-61581072 None:intergenic 40.0%
CTCCTAGTTTCACTGTTCAA+TGG + chr3_3:61581074-61581093 Msa0462530:intron 40.0%
GACCATTGAACAGTGAAACT+AGG - chr3_3:61581079-61581098 None:intergenic 40.0%
ATGGCACTCACATTGTAGTT+TGG + chr3_3:61581530-61581549 Msa0462530:intron 40.0%
AATACCAGTAGGAAGGGAAA+GGG - chr3_3:61581678-61581697 None:intergenic 40.0%
CAAATCCAATACCAGTAGGA+AGG - chr3_3:61581685-61581704 None:intergenic 40.0%
! TCCTACTGGTATTGGATTTG+TGG + chr3_3:61581685-61581704 Msa0462530:CDS 40.0%
ACCACAAATCCAATACCAGT+AGG - chr3_3:61581689-61581708 None:intergenic 40.0%
!!! GGCAGATTTTGAAGCTTCAA+TGG - chr3_3:61581726-61581745 None:intergenic 40.0%
CTACCTGAAGTTCTACAAGA+TGG + chr3_3:61581778-61581797 Msa0462530:CDS 40.0%
TTCCCATCTTGTAGAACTTC+AGG - chr3_3:61581784-61581803 None:intergenic 40.0%
! AGCTGAATGGAAGGAGTATA+TGG - chr3_3:61581815-61581834 None:intergenic 40.0%
CCATAAAGAAGCTGAATGGA+AGG - chr3_3:61581824-61581843 None:intergenic 40.0%
CCTTCCATTCAGCTTCTTTA+TGG + chr3_3:61581821-61581840 Msa0462530:CDS 40.0%
CACGCAAATTATGTCTTACC+TGG - chr3_3:61581927-61581946 None:intergenic 40.0%
!! TGGTAAATACAGACTTGCTG+TGG + chr3_3:61582270-61582289 Msa0462530:intron 40.0%
!! TAAATACAGACTTGCTGTGG+AGG + chr3_3:61582273-61582292 Msa0462530:intron 40.0%
ATTGCACACAAAAGGAAGAG+TGG + chr3_3:61582311-61582330 Msa0462530:CDS 40.0%
GTTGTTCCTCCTTACATTGA+CGG + chr3_3:61582358-61582377 Msa0462530:CDS 40.0%
TTGGGACTAAACAAAGTTGC+TGG + chr3_3:61582430-61582449 Msa0462530:CDS 40.0%
! GCTGGAAAGGTTTTCAGAAT+TGG + chr3_3:61582448-61582467 Msa0462530:intron 40.0%
GGCTCCAATTTCATCTATCA+GGG - chr3_3:61582533-61582552 None:intergenic 40.0%
TAATGTGTCAATGTCGTGTC+TGG + chr3_3:61583116-61583135 Msa0462530:intron 40.0%
TGTTAGTGTCTGTGCTTCAT+AGG + chr3_3:61583139-61583158 Msa0462530:intron 40.0%
GAGATGATACTCAGAGATGT+TGG + chr3_3:61583260-61583279 Msa0462530:CDS 40.0%
TACCCAGTAAAATTGGGAAG+TGG + chr3_3:61583284-61583303 Msa0462530:CDS 40.0%
! CTCCACTTCCCAATTTTACT+GGG - chr3_3:61583289-61583308 None:intergenic 40.0%
! ACTCCACTTCCCAATTTTAC+TGG - chr3_3:61583290-61583309 None:intergenic 40.0%
CAAATCCTTGAAGGAATGAG+AGG - chr3_3:61583347-61583366 None:intergenic 40.0%
CGTCTTCAAGAGAGTTCAAA+AGG - chr3_3:61583456-61583475 None:intergenic 40.0%
GGGACAAGAAAGTAGGAGAA+TGG + chr3_3:61578426-61578445 Msa0462530:five_prime_UTR 45.0%
AACTGTAATCTGAGCCACTG+AGG + chr3_3:61578466-61578485 Msa0462530:five_prime_UTR 45.0%
GGGAGAAAATAAGCATCCTG+AGG - chr3_3:61578515-61578534 None:intergenic 45.0%
!! ATGCTAAGAGCATTTGGCAG+TGG + chr3_3:61578622-61578641 Msa0462530:five_prime_UTR 45.0%
! GTTTGGTGAAGTATGGCAGA+AGG - chr3_3:61578661-61578680 None:intergenic 45.0%
TGAGTGTACCTCAGGTAGTT+TGG - chr3_3:61578678-61578697 None:intergenic 45.0%
AGAGTAAGTGAGTGTACCTC+AGG - chr3_3:61578686-61578705 None:intergenic 45.0%
!! TGGTGTTTAAAGAGTGCCTC+GGG + chr3_3:61579054-61579073 Msa0462530:intron 45.0%
AAATGTTAACGAATGCCCCG+AGG - chr3_3:61579073-61579092 None:intergenic 45.0%
! TGTAATCGTAGGCATCGTGT+CGG - chr3_3:61579330-61579349 None:intergenic 45.0%
TGAAGCACATACACTGACAC+TGG - chr3_3:61579394-61579413 None:intergenic 45.0%
TTTGTCAGAGCTGGAATTGC+AGG - chr3_3:61579703-61579722 None:intergenic 45.0%
TGATTACTAAGGCAGTCCAG+TGG - chr3_3:61580385-61580404 None:intergenic 45.0%
ACTGGACTGCCTTAGTAATC+AGG + chr3_3:61580384-61580403 Msa0462530:intron 45.0%
TTGACAAACACATTGTCGCC+TGG + chr3_3:61580740-61580759 Msa0462530:CDS 45.0%
CTTAGGTGGTAAGGTTCTGT+TGG + chr3_3:61581172-61581191 Msa0462530:intron 45.0%
ATGACACTCCATCAACAAGG+AGG - chr3_3:61581586-61581605 None:intergenic 45.0%
TGGATGACACTCCATCAACA+AGG - chr3_3:61581589-61581608 None:intergenic 45.0%
! ACGGAAATCGAGAGCACAAA+TGG - chr3_3:61581609-61581628 None:intergenic 45.0%
TTGTGCTCTCGATTTCCGTA+TGG + chr3_3:61581610-61581629 Msa0462530:CDS 45.0%
TCGATTTCCGTATGGACGAA+TGG + chr3_3:61581618-61581637 Msa0462530:CDS 45.0%
CGATTTCCGTATGGACGAAT+GGG + chr3_3:61581619-61581638 Msa0462530:CDS 45.0%
GATTTCCGTATGGACGAATG+GGG + chr3_3:61581620-61581639 Msa0462530:CDS 45.0%
! GGCTTTCTGAGAACCAGTTA+TGG - chr3_3:61581657-61581676 None:intergenic 45.0%
CAATACCAGTAGGAAGGGAA+AGG - chr3_3:61581679-61581698 None:intergenic 45.0%
CTTTCCCTTCCTACTGGTAT+TGG + chr3_3:61581677-61581696 Msa0462530:CDS 45.0%
ATTGCAAGGCACAACCGTTT+AGG + chr3_3:61581893-61581912 Msa0462530:CDS 45.0%
ACCTGGTAGCTGTACCTAAA+CGG - chr3_3:61581910-61581929 None:intergenic 45.0%
ACTTCAGCACCGTCAATGTA+AGG - chr3_3:61582370-61582389 None:intergenic 45.0%
! ACGGTGCTGAAGTTGTTAGA+AGG + chr3_3:61582377-61582396 Msa0462530:CDS 45.0%
! CGGTGCTGAAGTTGTTAGAA+GGG + chr3_3:61582378-61582397 Msa0462530:CDS 45.0%
CTGAAGTTGTTAGAAGGGCA+TGG + chr3_3:61582383-61582402 Msa0462530:CDS 45.0%
ACATCTTGGCAACTTGAACG+AGG + chr3_3:61582471-61582490 Msa0462530:intron 45.0%
GTGGCCCTGATAGATGAAAT+TGG + chr3_3:61582526-61582545 Msa0462530:intron 45.0%
CGGCTCCAATTTCATCTATC+AGG - chr3_3:61582534-61582553 None:intergenic 45.0%
GATGAAATTGGAGCCGTATC+CGG + chr3_3:61582538-61582557 Msa0462530:intron 45.0%
! TGGCTTACGGCTTACCTTTT+AGG + chr3_3:61582694-61582713 Msa0462530:intron 45.0%
! GGCTTACGGCTTACCTTTTA+GGG + chr3_3:61582695-61582714 Msa0462530:intron 45.0%
CACATGAGTCAATGTCGAGT+TGG - chr3_3:61583055-61583074 None:intergenic 45.0%
! CAACTATTGGGTTGTCTTGC+TGG + chr3_3:61583233-61583252 Msa0462530:CDS 45.0%
GATGAAGTGGAACACCTCAG+TGG - chr3_3:61578483-61578502 None:intergenic 50.0%
GAGGCTGTGAATGGATGAAG+TGG - chr3_3:61578496-61578515 None:intergenic 50.0%
CTTCATCCATTCACAGCCTC+AGG + chr3_3:61578496-61578515 Msa0462530:five_prime_UTR 50.0%
AAGCATCCTGAGGCTGTGAA+TGG - chr3_3:61578505-61578524 None:intergenic 50.0%
!! GGTGTTTAAAGAGTGCCTCG+GGG + chr3_3:61579055-61579074 Msa0462530:intron 50.0%
GTCCGTGCTTCATAGTTCCA+TGG - chr3_3:61579295-61579314 None:intergenic 50.0%
ACCTGGTCCGGTATGTTAAC+CGG - chr3_3:61579640-61579659 None:intergenic 50.0%
ATAGCACGAATGACCTGGTC+CGG - chr3_3:61579652-61579671 None:intergenic 50.0%
TGCTATGAGCCGAAACAACG+AGG + chr3_3:61579666-61579685 Msa0462530:CDS 50.0%
GCTCTTGCTGAACCAATCTC+AGG - chr3_3:61580622-61580641 None:intergenic 50.0%
CACTCCATCAACAAGGAGGA+GGG - chr3_3:61581582-61581601 None:intergenic 50.0%
ACACTCCATCAACAAGGAGG+AGG - chr3_3:61581583-61581602 None:intergenic 50.0%
CTACTCCCCATTCGTCCATA+CGG - chr3_3:61581628-61581647 None:intergenic 50.0%
GGAGTAGATGTGGCCATAAC+TGG + chr3_3:61581641-61581660 Msa0462530:CDS 50.0%
AAAGCCCTTTCCCTTCCTAC+TGG + chr3_3:61581671-61581690 Msa0462530:CDS 50.0%
ACCGTTTAGGTACAGCTACC+AGG + chr3_3:61581906-61581925 Msa0462530:CDS 50.0%
TCAGCACCGTCAATGTAAGG+AGG - chr3_3:61582367-61582386 None:intergenic 50.0%
! ATTGGGTTGTCTTGCTGGTG+TGG + chr3_3:61583238-61583257 Msa0462530:CDS 50.0%
TATGAAGCACGGACACGCGT+TGG + chr3_3:61579301-61579320 Msa0462530:intron 55.0%
CACTGACACTGGACACGACA+CGG - chr3_3:61579383-61579402 None:intergenic 55.0%
CCATCTCTTTGTTCCAGGGC+CGG + chr3_3:61579618-61579637 Msa0462530:CDS 55.0%
TCCAGGGCCGGTTAACATAC+CGG + chr3_3:61579630-61579649 Msa0462530:CDS 55.0%
GGCTCATAGCACGAATGACC+TGG - chr3_3:61579657-61579676 None:intergenic 55.0%
!! TTGGTTCAGGTACCGGTGCT+TGG + chr3_3:61580708-61580727 Msa0462530:intron 55.0%
!! TGGTTCAGGTACCGGTGCTT+GGG + chr3_3:61580709-61580728 Msa0462530:intron 55.0%
! CAAAGCACTCTCCCAAGCAC+CGG - chr3_3:61580723-61580742 None:intergenic 55.0%
GTGGAAAGTGAATGGGGCTG+TGG + chr3_3:61580848-61580867 Msa0462530:CDS 55.0%
GGACGAATGGGGAGTAGATG+TGG + chr3_3:61581631-61581650 Msa0462530:CDS 55.0%
!! ACAGACTTGCTGTGGAGGCA+TGG + chr3_3:61582278-61582297 Msa0462530:intron 55.0%
!! CAGACTTGCTGTGGAGGCAT+GGG + chr3_3:61582279-61582298 Msa0462530:intron 55.0%
!! AGACTTGCTGTGGAGGCATG+GGG + chr3_3:61582280-61582299 Msa0462530:intron 55.0%
!! TATGTATCGGTGGCGGACAC+CGG - chr3_3:61582560-61582579 None:intergenic 55.0%
CCGGCCCTGGAACAAAGAGA+TGG - chr3_3:61579621-61579640 None:intergenic 60.0%
TCCGGTATGTTAACCGGCCC+TGG - chr3_3:61579634-61579653 None:intergenic 60.0%
GCCGGTTAACATACCGGACC+AGG + chr3_3:61579636-61579655 Msa0462530:CDS 60.0%
CAAGGAGGAGGGCTGGATGT+TGG - chr3_3:61581571-61581590 None:intergenic 60.0%
CCATCAACAAGGAGGAGGGC+TGG - chr3_3:61581578-61581597 None:intergenic 60.0%
CCAGCCCTCCTCCTTGTTGA+TGG + chr3_3:61581575-61581594 Msa0462530:CDS 60.0%
!! TCGGTGGCGGACACCGGATA+CGG - chr3_3:61582554-61582573 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 61578405 61583805 61578405 ID=Msa0462530;Name=Msa0462530
chr3_3 mRNA 61578405 61583805 61578405 ID=Msa0462530-mRNA-1;Parent=Msa0462530;Name=Msa0462530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=356|0.8|0.83|1|0.4|0.66|6|438|389
chr3_3 exon 61578405 61578688 61578405 ID=Msa0462530-mRNA-1:exon:12984;Parent=Msa0462530-mRNA-1
chr3_3 exon 61579517 61579793 61579517 ID=Msa0462530-mRNA-1:exon:12985;Parent=Msa0462530-mRNA-1
chr3_3 exon 61580717 61581001 61580717 ID=Msa0462530-mRNA-1:exon:12986;Parent=Msa0462530-mRNA-1
chr3_3 exon 61581561 61581927 61581561 ID=Msa0462530-mRNA-1:exon:12987;Parent=Msa0462530-mRNA-1
chr3_3 exon 61582282 61582456 61582282 ID=Msa0462530-mRNA-1:exon:12988;Parent=Msa0462530-mRNA-1
chr3_3 exon 61583230 61583805 61583230 ID=Msa0462530-mRNA-1:exon:12989;Parent=Msa0462530-mRNA-1
chr3_3 five_prime_UTR 61578405 61578688 61578405 ID=Msa0462530-mRNA-1:five_prime_utr;Parent=Msa0462530-mRNA-1
chr3_3 five_prime_UTR 61579517 61579588 61579517 ID=Msa0462530-mRNA-1:five_prime_utr;Parent=Msa0462530-mRNA-1
chr3_3 CDS 61579589 61579793 61579589 ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3 CDS 61580717 61581001 61580717 ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3 CDS 61581561 61581927 61581561 ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3 CDS 61582282 61582456 61582282 ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3 CDS 61583230 61583367 61583230 ID=Msa0462530-mRNA-1:cds;Parent=Msa0462530-mRNA-1
chr3_3 three_prime_UTR 61583368 61583805 61583368 ID=Msa0462530-mRNA-1:three_prime_utr;Parent=Msa0462530-mRNA-1
Gene Sequence

>Msa0462530

ATGGATTATGTTAATGGACCAGGAAGAAACCATCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCTGCAATTCCAGCTCTGACAAAAACTCTACTTGAAGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGTACCGGTGCTTGGGAGAGTGCTTTGACAAACACATTGTCGCCTGGAGATCGTATTGTATCTTTCGTGATTGGCCAATTCAGTTTGCTTTGGGTTGATCAGCAGCAACGCCTTAAATTTAATGTCGATGTTGTGGAAAGTGAATGGGGCTGTGGTGCTGATCTCGACATTCTAGAATCAAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGAGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATATACTCCTTCCATTCAGCTTCTTTATGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGACAATATTATTGCAAGGCACAACCGTTTAGGTACAGCTACCAGACTTGCTGTGGAGGCATGGGGTTTGAAGAATTGCACACAAAAGGAAGAGTGGTTCAGTGACACAGTGACTGCTGTTGTTGTTCCTCCTTACATTGACGGTGCTGAAGTTGTTAGAAGGGCATGGAAAAGATACAATTTGAGCTTAGGTTTGGGACTAAACAAAGTTGCTGGAAAGTTGCAACTATTGGGTTGTCTTGCTGGTGTGGAGATGATACTCAGAGATGTTGGTTACCCAGTAAAATTGGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACAATATTCCTCTCATTCCTTCAAGGATTTGA

Protein sequence

>Msa0462530

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGCGADLDILESKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLDNIIARHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDGAEVVRRAWKRYNLSLGLGLNKVAGKLQLLGCLAGVEMILRDVGYPVKLGSGVAAASAYLQNNIPLIPSRI*