Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484220 | XP_003612270.1 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 2.14e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484220 | sp|Q38853|STR15_ARATH | 58.741 | 143 | 55 | 2 | 47 | 185 | 40 | 182 | 2.84e-55 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484220 | B7FGV4 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 1.02e-128 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060080 | Msa0484220 | 0.800035 | 1.740910e-48 | -8.615850e-47 |
| Msa0086620 | Msa0484220 | 0.828264 | 9.901092e-55 | -8.615850e-47 |
| Msa0098550 | Msa0484220 | 0.827182 | 1.801701e-54 | -8.615850e-47 |
| Msa0120120 | Msa0484220 | 0.800027 | 1.747079e-48 | -8.615850e-47 |
| Msa0151210 | Msa0484220 | 0.825225 | 5.265413e-54 | -8.615850e-47 |
| Msa0157030 | Msa0484220 | 0.805112 | 1.562431e-49 | -8.615850e-47 |
| Msa0213020 | Msa0484220 | 0.821279 | 4.392803e-53 | -8.615850e-47 |
| Msa0213510 | Msa0484220 | 0.820977 | 5.156846e-53 | -8.615850e-47 |
| Msa0232650 | Msa0484220 | 0.802870 | 4.569688e-49 | -8.615850e-47 |
| Msa0376480 | Msa0484220 | 0.809584 | 1.760428e-50 | -8.615850e-47 |
| Msa0379950 | Msa0484220 | 0.835241 | 1.882074e-56 | -8.615850e-47 |
| Msa0386520 | Msa0484220 | 0.804044 | 2.609092e-49 | -8.615850e-47 |
| Msa0400880 | Msa0484220 | 0.804850 | 1.772120e-49 | -8.615850e-47 |
| Msa0400900 | Msa0484220 | 0.800129 | 1.665610e-48 | -8.615850e-47 |
| Msa0462530 | Msa0484220 | 0.837344 | 5.495261e-57 | -8.615850e-47 |
| Msa0472270 | Msa0484220 | 0.802861 | 4.588889e-49 | -8.615850e-47 |
| Msa0264710 | Msa0484220 | -0.802874 | 4.560368e-49 | -8.615850e-47 |
| Msa0292860 | Msa0484220 | 0.853644 | 2.084722e-61 | -8.615850e-47 |
| Msa0302750 | Msa0484220 | -0.803097 | 4.101259e-49 | -8.615850e-47 |
| Msa0330970 | Msa0484220 | 0.817961 | 2.513242e-52 | -8.615850e-47 |
| Msa0483410 | Msa0484220 | 0.801481 | 8.824714e-49 | -8.615850e-47 |
| Msa0484220 | Msa0510660 | 0.810686 | 1.018868e-50 | -8.615850e-47 |
| Msa0484220 | Msa0510750 | 0.813657 | 2.290800e-51 | -8.615850e-47 |
| Msa0484220 | Msa0548260 | 0.807148 | 5.822513e-50 | -8.615850e-47 |
| Msa0484220 | Msa0575670 | 0.806897 | 6.581950e-50 | -8.615850e-47 |
| Msa0484220 | Msa0603180 | 0.810939 | 8.981337e-51 | -8.615850e-47 |
| Msa0484220 | Msa0660070 | 0.805323 | 1.410905e-49 | -8.615850e-47 |
| Msa0484220 | Msa0705050 | 0.819555 | 1.092131e-52 | -8.615850e-47 |
| Msa0484220 | Msa0729590 | 0.824129 | 9.538529e-54 | -8.615850e-47 |
| Msa0484220 | Msa0751540 | 0.805443 | 1.331734e-49 | -8.615850e-47 |
| Msa0484220 | Msa0752830 | 0.810595 | 1.066158e-50 | -8.615850e-47 |
| Msa0484220 | Msa0755500 | 0.820485 | 6.692342e-53 | -8.615850e-47 |
| Msa0484220 | Msa0758820 | 0.885015 | 1.169617e-71 | -8.615850e-47 |
| Msa0484220 | Msa0826820 | 0.802139 | 6.463417e-49 | -8.615850e-47 |
| Msa0484220 | Msa0829750 | 0.805178 | 1.512969e-49 | -8.615850e-47 |
| Msa0484220 | Msa0834830 | 0.822510 | 2.279562e-53 | -8.615850e-47 |
| Msa0484220 | Msa0838630 | 0.927173 | 1.698632e-91 | -8.615850e-47 |
| Msa0484220 | Msa0838660 | 0.851064 | 1.131847e-60 | -8.615850e-47 |
| Msa0484220 | Msa0865500 | 0.810229 | 1.278896e-50 | -8.615850e-47 |
| Msa0484220 | Msa0876150 | 0.808047 | 3.752983e-50 | -8.615850e-47 |
| Msa0484220 | Msa0930160 | 0.803967 | 2.707524e-49 | -8.615850e-47 |
| Msa0484220 | Msa0975550 | 0.810020 | 1.418562e-50 | -8.615850e-47 |
| Msa0484220 | Msa1004140 | 0.816743 | 4.725547e-52 | -8.615850e-47 |
| Msa0484220 | Msa1144420 | 0.826083 | 3.296172e-54 | -8.615850e-47 |
| Msa0484220 | Msa1216900 | 0.800442 | 1.438372e-48 | -8.615850e-47 |
| Msa0484220 | Msa1225560 | -0.804387 | 2.213857e-49 | -8.615850e-47 |
| Msa0484220 | Msa1235040 | 0.806548 | 7.796120e-50 | -8.615850e-47 |
| Msa0484220 | Msa1296270 | 0.805306 | 1.422957e-49 | -8.615850e-47 |
| Msa0484220 | Msa1345490 | 0.817408 | 3.349314e-52 | -8.615850e-47 |
| Msa0484220 | Msa1355540 | -0.800895 | 1.162791e-48 | -8.615850e-47 |
| Msa0484220 | Msa1390480 | 0.808865 | 2.510561e-50 | -8.615850e-47 |
| Msa0484220 | Msa1413360 | 0.808308 | 3.300614e-50 | -8.615850e-47 |
| Msa0484220 | Msa1418780 | 0.801290 | 9.652770e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484220 | MtrunA17_Chr5g0406281 | 95.676 | 185 | 8 | 0 | 1 | 185 | 1 | 185 | 1.97e-132 | 368 |
| Msa0484220 | MtrunA17_Chr5g0405631 | 49.123 | 114 | 56 | 1 | 74 | 185 | 31 | 144 | 1.25e-31 | 111 |
| Msa0484220 | MtrunA17_Chr2g0284621 | 42.857 | 112 | 63 | 1 | 75 | 185 | 12 | 123 | 4.89e-29 | 104 |
| Msa0484220 | MtrunA17_Chr4g0020691 | 39.200 | 125 | 71 | 2 | 62 | 185 | 3 | 123 | 6.97e-28 | 101 |
| Msa0484220 | MtrunA17_Chr8g0371681 | 45.833 | 120 | 59 | 2 | 61 | 178 | 5 | 120 | 7.09e-28 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0484220 | AT4G35770.1 | 58.741 | 143 | 55 | 2 | 47 | 185 | 40 | 182 | 2.89e-56 | 176 |
| Msa0484220 | AT5G66040.1 | 65.487 | 113 | 39 | 0 | 72 | 184 | 7 | 119 | 4.32e-51 | 160 |
| Msa0484220 | AT4G35770.2 | 57.143 | 119 | 47 | 2 | 47 | 161 | 40 | 158 | 4.59e-42 | 139 |
| Msa0484220 | AT4G35770.3 | 57.143 | 119 | 47 | 2 | 47 | 161 | 40 | 158 | 6.68e-42 | 139 |
| Msa0484220 | AT4G35770.5 | 56.436 | 101 | 40 | 2 | 47 | 143 | 40 | 140 | 1.88e-33 | 117 |
| Msa0484220 | AT5G66170.3 | 49.107 | 112 | 51 | 2 | 67 | 176 | 12 | 119 | 1.04e-30 | 109 |
| Msa0484220 | AT5G66170.2 | 48.246 | 114 | 51 | 3 | 67 | 176 | 12 | 121 | 9.10e-29 | 104 |
| Msa0484220 | AT2G21045.1 | 41.441 | 111 | 65 | 0 | 75 | 185 | 43 | 153 | 6.19e-27 | 100 |
| Msa0484220 | AT5G66170.1 | 50.515 | 97 | 42 | 2 | 67 | 161 | 12 | 104 | 5.97e-24 | 92.0 |
| Msa0484220 | AT5G66040.2 | 60.938 | 64 | 25 | 0 | 121 | 184 | 1 | 64 | 5.14e-23 | 87.4 |
| Msa0484220 | AT2G17850.1 | 40.385 | 104 | 60 | 1 | 75 | 176 | 34 | 137 | 9.70e-22 | 87.0 |
| Msa0484220 | AT4G35770.4 | 54.430 | 79 | 32 | 2 | 47 | 121 | 40 | 118 | 3.45e-21 | 84.3 |
| Msa0484220 | AT4G35770.6 | 54.430 | 79 | 32 | 2 | 47 | 121 | 40 | 118 | 3.45e-21 | 84.3 |
| Msa0484220 | AT2G17850.3 | 33.929 | 112 | 63 | 2 | 77 | 177 | 59 | 170 | 4.39e-16 | 72.8 |
| Msa0484220 | AT2G17850.2 | 39.326 | 89 | 52 | 1 | 75 | 161 | 34 | 122 | 2.32e-15 | 69.7 |
Find 62 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATGTCCCTTATTAAATT+TGG | 0.146508 | 3_4:-1522744 | None:intergenic |
| AAAATCTTCCAAATTTAATA+AGG | 0.178231 | 3_4:+1522736 | Msa0484220:CDS |
| TCTAGCTGGCCATAAGTATT+TGG | 0.181385 | 3_4:+1522984 | Msa0484220:CDS |
| ACCTTACATCCAAATACTTA+TGG | 0.228445 | 3_4:-1522993 | None:intergenic |
| GTGTGGTTTAAAGGGGAATT+TGG | 0.241136 | 3_4:+1522906 | Msa0484220:CDS |
| AAGCACGATGTGTGGTTTAA+AGG | 0.244947 | 3_4:+1522897 | Msa0484220:intron |
| TGTAACAATCACTTAATATC+TGG | 0.245032 | 3_4:-1522380 | None:intergenic |
| AGCATATCATGATTTCTTCT+TGG | 0.301007 | 3_4:-1524541 | None:intergenic |
| GATCATGTAAATGCATAAAA+AGG | 0.312692 | 3_4:+1524322 | Msa0484220:three_prime_UTR |
| TTATTTCTATATACAGCTTC+AGG | 0.321929 | 3_4:-1524284 | None:intergenic |
| AGCACGATGTGTGGTTTAAA+GGG | 0.328888 | 3_4:+1522898 | Msa0484220:intron |
| GATCCAACTTTGTACATATA+AGG | 0.335693 | 3_4:-1523349 | None:intergenic |
| TATGCTGCTTGGACTCAAAA+TGG | 0.348576 | 3_4:+1524237 | Msa0484220:CDS |
| ATGAAGTATCATGTAATTCT+TGG | 0.358857 | 3_4:+1524727 | Msa0484220:three_prime_UTR |
| AAATCTTCCAAATTTAATAA+GGG | 0.364373 | 3_4:+1522737 | Msa0484220:CDS |
| ATTAGAGTGTGACCTTGTTA+TGG | 0.400999 | 3_4:-1522576 | None:intergenic |
| GGGAATTTGGAGGAAGTTGT+TGG | 0.404121 | 3_4:+1522919 | Msa0484220:CDS |
| GCCATAAGTATTTGGATGTA+AGG | 0.427420 | 3_4:+1522992 | Msa0484220:CDS |
| GAAATAATAAGAATTCTGTT+TGG | 0.432163 | 3_4:+1524300 | Msa0484220:three_prime_UTR |
| TTAAATTCATTTAATTAATG+AGG | 0.432338 | 3_4:+1522276 | None:intergenic |
| TAGCTGGTGGTTATGCTGCT+TGG | 0.436274 | 3_4:+1524226 | Msa0484220:CDS |
| ACACGCACTGGCACTGAAGT+TGG | 0.437130 | 3_4:-1522946 | None:intergenic |
| ACCAGCTATGTCTGTGAGTC+CGG | 0.440393 | 3_4:-1524211 | None:intergenic |
| TCTGAAGAAACCCTCTCTCT+TGG | 0.444875 | 3_4:+1524417 | Msa0484220:three_prime_UTR |
| CCTTCATATTATTACTGTTG+TGG | 0.444925 | 3_4:-1524654 | None:intergenic |
| TACATATCAATAATTAATGA+AGG | 0.448491 | 3_4:+1524374 | Msa0484220:three_prime_UTR |
| AACCAAAGTGTTCCAACTTC+CGG | 0.448542 | 3_4:+1522780 | Msa0484220:CDS |
| GTGTTCTGCCGTAGAATTAG+AGG | 0.450733 | 3_4:-1522551 | None:intergenic |
| AGTGATTGTTACATATAAAG+AGG | 0.456852 | 3_4:+1522390 | Msa0484220:five_prime_UTR |
| TTCGAATTGAACTGTAAAGA+TGG | 0.461998 | 3_4:-1524466 | None:intergenic |
| TATATGTACAAAGTTGGATC+AGG | 0.472445 | 3_4:+1523352 | Msa0484220:CDS |
| TTTAATGCTGGACACGCTCC+TGG | 0.480736 | 3_4:+1523313 | Msa0484220:CDS |
| ACTTGCTACAGAACAATGAT+TGG | 0.496501 | 3_4:+1524260 | Msa0484220:exon |
| GTAACAATCACTTAATATCT+GGG | 0.502771 | 3_4:-1522379 | None:intergenic |
| ATACCTTATATGTACAAAGT+TGG | 0.502957 | 3_4:+1523346 | Msa0484220:CDS |
| TGCATTGTATAGGGGTTCAC+CGG | 0.511879 | 3_4:+1524192 | Msa0484220:intron |
| GAAATTATGAAGAAATTGAA+AGG | 0.514237 | 3_4:-1524632 | None:intergenic |
| GCTCACGAGCTTCTTCTAGC+TGG | 0.514761 | 3_4:+1522970 | Msa0484220:CDS |
| AGGGTTGTCAGCTTGGGAAA+AGG | 0.515357 | 3_4:+1523787 | Msa0484220:intron |
| AGCTCGTGAGCTACACGCAC+TGG | 0.517304 | 3_4:-1522958 | None:intergenic |
| TTCGAACCATGATCATTGAC+AGG | 0.518961 | 3_4:+1524483 | Msa0484220:three_prime_UTR |
| CCACAACAGTAATAATATGA+AGG | 0.529671 | 3_4:+1524654 | Msa0484220:three_prime_UTR |
| TACCGGAAGTTGGAACACTT+TGG | 0.532325 | 3_4:-1522782 | None:intergenic |
| GTTCACGTCCTCTAATTCTA+CGG | 0.544162 | 3_4:+1522543 | Msa0484220:CDS |
| ACCACGGAAGAGTTTAATGC+TGG | 0.548422 | 3_4:+1523301 | Msa0484220:CDS |
| TGGTTTAAAGGGGAATTTGG+AGG | 0.552343 | 3_4:+1522909 | Msa0484220:CDS |
| GCTTGGGAAAAGGTCTATGA+TGG | 0.555495 | 3_4:+1523797 | Msa0484220:CDS |
| AAATTATGAAGAAATTGAAA+GGG | 0.566952 | 3_4:-1524631 | None:intergenic |
| ACCGGACTCACAGACATAGC+TGG | 0.570324 | 3_4:+1524210 | Msa0484220:CDS |
| TAAGGTATGTTAATCGCACC+AGG | 0.610995 | 3_4:-1523331 | None:intergenic |
| GCAAGCGGCGGAGACATCAA+AGG | 0.618010 | 3_4:-1522516 | None:intergenic |
| GCACGATGTGTGGTTTAAAG+GGG | 0.620601 | 3_4:+1522899 | Msa0484220:intron |
| ATTGTGATTGTGCAGGACCA+CGG | 0.621639 | 3_4:+1523285 | Msa0484220:intron |
| TCCAGCATTAAACTCTTCCG+TGG | 0.640037 | 3_4:-1523302 | None:intergenic |
| ACACATCAAGCCAAGAGAGA+GGG | 0.640638 | 3_4:-1524427 | None:intergenic |
| GGCAGAACACGACCATAACA+AGG | 0.641310 | 3_4:+1522564 | Msa0484220:CDS |
| AACACATCAAGCCAAGAGAG+AGG | 0.646052 | 3_4:-1524428 | None:intergenic |
| AAATACTATGAAATGCAAAG+TGG | 0.646380 | 3_4:-1522455 | None:intergenic |
| TCGAATTGAACTGTAAAGAT+GGG | 0.648236 | 3_4:-1524465 | None:intergenic |
| ACGTGAACGAAAGCAAGCGG+CGG | 0.674129 | 3_4:-1522528 | None:intergenic |
| AGGACGTGAACGAAAGCAAG+CGG | 0.681028 | 3_4:-1522531 | None:intergenic |
| GGACTCACAGACATAGCTGG+TGG | 0.717723 | 3_4:+1524213 | Msa0484220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCTTCCAAATTTAATA+AGG | + | chr3_4:1522736-1522755 | Msa0484220:CDS | 15.0% |
| !! | AAATCTTCCAAATTTAATAA+GGG | + | chr3_4:1522737-1522756 | Msa0484220:CDS | 15.0% |
| !! | CAAAACATTAGTATATTAAT+CGG | - | chr3_4:1523216-1523235 | None:intergenic | 15.0% |
| !! | ATATGAATAGATTAGAAAAA+AGG | - | chr3_4:1523565-1523584 | None:intergenic | 15.0% |
| !! | TACATATCAATAATTAATGA+AGG | + | chr3_4:1524374-1524393 | Msa0484220:three_prime_UTR | 15.0% |
| !! | AAATTATGAAGAAATTGAAA+GGG | - | chr3_4:1524634-1524653 | None:intergenic | 15.0% |
| !! | AGTATATAGATATAGAAGAA+TGG | - | chr3_4:1522606-1522625 | None:intergenic | 20.0% |
| !! | TAAAGTAACCAATTTAATCA+AGG | + | chr3_4:1523015-1523034 | Msa0484220:intron | 20.0% |
| !! | TATTTAAGCCTTGATTAAAT+TGG | - | chr3_4:1523026-1523045 | None:intergenic | 20.0% |
| !!! | CATAATAGTTTTGTAGTTTT+AGG | - | chr3_4:1523089-1523108 | None:intergenic | 20.0% |
| !!! | CGATTAATATACTAATGTTT+TGG | + | chr3_4:1523214-1523233 | Msa0484220:intron | 20.0% |
| !! | TTGTAATATTCTTAGTGTTT+AGG | + | chr3_4:1523403-1523422 | Msa0484220:intron | 20.0% |
| !! | TAAGAGATATATAATACTCT+TGG | + | chr3_4:1523454-1523473 | Msa0484220:intron | 20.0% |
| !!! | AGTTGTTTTGATTAATCTAA+TGG | - | chr3_4:1523480-1523499 | None:intergenic | 20.0% |
| !! | AAATAACATACAAAATCTCA+TGG | - | chr3_4:1523722-1523741 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTTTACACTTTC+AGG | - | chr3_4:1524050-1524069 | None:intergenic | 20.0% |
| !!! | TTTTCATCAATAATTAGTCT+TGG | + | chr3_4:1524082-1524101 | Msa0484220:intron | 20.0% |
| !!! | TTAACTTCTTGAAAATTTTG+AGG | + | chr3_4:1524142-1524161 | Msa0484220:intron | 20.0% |
| !! | GAAATAATAAGAATTCTGTT+TGG | + | chr3_4:1524300-1524319 | Msa0484220:three_prime_UTR | 20.0% |
| !! | GAAATTATGAAGAAATTGAA+AGG | - | chr3_4:1524635-1524654 | None:intergenic | 20.0% |
| ! | GTAACAATCACTTAATATCT+GGG | - | chr3_4:1522382-1522401 | None:intergenic | 25.0% |
| ! | TGTAACAATCACTTAATATC+TGG | - | chr3_4:1522383-1522402 | None:intergenic | 25.0% |
| ! | AGTGATTGTTACATATAAAG+AGG | + | chr3_4:1522390-1522409 | Msa0484220:five_prime_UTR | 25.0% |
| !!! | CTTTTTTATGAAATGCTTTG+AGG | - | chr3_4:1522431-1522450 | None:intergenic | 25.0% |
| ! | AAATACTATGAAATGCAAAG+TGG | - | chr3_4:1522458-1522477 | None:intergenic | 25.0% |
| ! | TCTATGTCCCTTATTAAATT+TGG | - | chr3_4:1522747-1522766 | None:intergenic | 25.0% |
| !!! | AATGTTTTGGAATTGTGATT+TGG | + | chr3_4:1523227-1523246 | Msa0484220:intron | 25.0% |
| ! | ATACCTTATATGTACAAAGT+TGG | + | chr3_4:1523346-1523365 | Msa0484220:CDS | 25.0% |
| ! | TAGATTAATCAAAACAACTG+AGG | + | chr3_4:1523481-1523500 | Msa0484220:intron | 25.0% |
| ! | AGATCAAAAAGAGATCAAAT+TGG | + | chr3_4:1523525-1523544 | Msa0484220:intron | 25.0% |
| ! | ATTAGAAAAAAGGACACTAA+TGG | - | chr3_4:1523555-1523574 | None:intergenic | 25.0% |
| ! | CATTAGCAGATGAATTAATT+TGG | - | chr3_4:1523754-1523773 | None:intergenic | 25.0% |
| ! | TATTGATGAAAAAAGTAGCA+CGG | - | chr3_4:1524074-1524093 | None:intergenic | 25.0% |
| !! | GTTAATAAAGTATCTATCAC+TGG | - | chr3_4:1524127-1524146 | None:intergenic | 25.0% |
| !!! | ACAATTGTTTTGCATTGTAT+AGG | + | chr3_4:1524182-1524201 | Msa0484220:intron | 25.0% |
| !!! | CAATTGTTTTGCATTGTATA+GGG | + | chr3_4:1524183-1524202 | Msa0484220:intron | 25.0% |
| !!! | AATTGTTTTGCATTGTATAG+GGG | + | chr3_4:1524184-1524203 | Msa0484220:intron | 25.0% |
| !!! | TTATTTCTATATACAGCTTC+AGG | - | chr3_4:1524287-1524306 | None:intergenic | 25.0% |
| ! | GATCATGTAAATGCATAAAA+AGG | + | chr3_4:1524322-1524341 | Msa0484220:three_prime_UTR | 25.0% |
| ! | ATGTAAATGCATAAAAAGGA+AGG | + | chr3_4:1524326-1524345 | Msa0484220:three_prime_UTR | 25.0% |
| !! | ATGAAGTATCATGTAATTCT+TGG | + | chr3_4:1524727-1524746 | Msa0484220:three_prime_UTR | 25.0% |
| !! | TCAACACTTTTTACACTTAC+CGG | - | chr3_4:1522802-1522821 | None:intergenic | 30.0% |
| ACCTTACATCCAAATACTTA+TGG | - | chr3_4:1522996-1523015 | None:intergenic | 30.0% | |
| ACAATCACAATAAACAGGTA+TGG | - | chr3_4:1523276-1523295 | None:intergenic | 30.0% | |
| GATCCAACTTTGTACATATA+AGG | - | chr3_4:1523352-1523371 | None:intergenic | 30.0% | |
| TATATGTACAAAGTTGGATC+AGG | + | chr3_4:1523352-1523371 | Msa0484220:CDS | 30.0% | |
| AATTATGTGTTCATGCATAC+AGG | + | chr3_4:1523603-1523622 | Msa0484220:intron | 30.0% | |
| ATTATGTGTTCATGCATACA+GGG | + | chr3_4:1523604-1523623 | Msa0484220:intron | 30.0% | |
| ! | GAACAGCAATTTTGTTAAAG+AGG | + | chr3_4:1523635-1523654 | Msa0484220:CDS | 30.0% |
| ! | ATCTTCTTTTCTAAACTGTG+AGG | - | chr3_4:1523664-1523683 | None:intergenic | 30.0% |
| !! | CTAATGTTATTGCTTTTGCA+GGG | + | chr3_4:1523768-1523787 | Msa0484220:intron | 30.0% |
| AACTCAAACAAGAAGTGAAA+GGG | - | chr3_4:1523988-1524007 | None:intergenic | 30.0% | |
| AAACTCAAACAAGAAGTGAA+AGG | - | chr3_4:1523989-1524008 | None:intergenic | 30.0% | |
| AAGTATCTATCACTGGAAAT+TGG | - | chr3_4:1524120-1524139 | None:intergenic | 30.0% | |
| TCGAATTGAACTGTAAAGAT+GGG | - | chr3_4:1524468-1524487 | None:intergenic | 30.0% | |
| TTCGAATTGAACTGTAAAGA+TGG | - | chr3_4:1524469-1524488 | None:intergenic | 30.0% | |
| !!! | TTTTTTCCTGTCAATGATCA+TGG | - | chr3_4:1524492-1524511 | None:intergenic | 30.0% |
| AGCATATCATGATTTCTTCT+TGG | - | chr3_4:1524544-1524563 | None:intergenic | 30.0% | |
| CCTTCATATTATTACTGTTG+TGG | - | chr3_4:1524657-1524676 | None:intergenic | 30.0% | |
| CCACAACAGTAATAATATGA+AGG | + | chr3_4:1524654-1524673 | Msa0484220:three_prime_UTR | 30.0% | |
| ATTAGAGTGTGACCTTGTTA+TGG | - | chr3_4:1522579-1522598 | None:intergenic | 35.0% | |
| ! | TTTTTACACTTACCGGAAGT+TGG | - | chr3_4:1522795-1522814 | None:intergenic | 35.0% |
| !!! | TTTTTTCAAAGCACGATGTG+TGG | + | chr3_4:1522889-1522908 | Msa0484220:intron | 35.0% |
| GCCATAAGTATTTGGATGTA+AGG | + | chr3_4:1522992-1523011 | Msa0484220:CDS | 35.0% | |
| CAACTGAGGTTTGATAGAAT+AGG | + | chr3_4:1523495-1523514 | Msa0484220:intron | 35.0% | |
| ACATACAAAATCTCATGGTG+CGG | - | chr3_4:1523717-1523736 | None:intergenic | 35.0% | |
| !! | GCTAATGTTATTGCTTTTGC+AGG | + | chr3_4:1523767-1523786 | Msa0484220:intron | 35.0% |
| ACTCAAACAAGAAGTGAAAG+GGG | - | chr3_4:1523987-1524006 | None:intergenic | 35.0% | |
| TAGCACTCAACTAAAATGCT+AGG | - | chr3_4:1524015-1524034 | None:intergenic | 35.0% | |
| !!! | TAGCATTTTAGTTGAGTGCT+AGG | + | chr3_4:1524014-1524033 | Msa0484220:intron | 35.0% |
| !!! | TTTTGAGGTCAAAGCTTGTT+TGG | + | chr3_4:1524157-1524176 | Msa0484220:intron | 35.0% |
| ! | ACTTGCTACAGAACAATGAT+TGG | + | chr3_4:1524260-1524279 | Msa0484220:exon | 35.0% |
| AATGCATAAAAAGGAAGGAG+TGG | + | chr3_4:1524331-1524350 | Msa0484220:three_prime_UTR | 35.0% | |
| GTTCACGTCCTCTAATTCTA+CGG | + | chr3_4:1522543-1522562 | Msa0484220:CDS | 40.0% | |
| ! | AACCAAAGTGTTCCAACTTC+CGG | + | chr3_4:1522780-1522799 | Msa0484220:CDS | 40.0% |
| AAGCACGATGTGTGGTTTAA+AGG | + | chr3_4:1522897-1522916 | Msa0484220:intron | 40.0% | |
| AGCACGATGTGTGGTTTAAA+GGG | + | chr3_4:1522898-1522917 | Msa0484220:intron | 40.0% | |
| GTGTGGTTTAAAGGGGAATT+TGG | + | chr3_4:1522906-1522925 | Msa0484220:CDS | 40.0% | |
| TGGTTTAAAGGGGAATTTGG+AGG | + | chr3_4:1522909-1522928 | Msa0484220:CDS | 40.0% | |
| TCTAGCTGGCCATAAGTATT+TGG | + | chr3_4:1522984-1523003 | Msa0484220:CDS | 40.0% | |
| ! | GTATGGAAAGTCGTGAGTTT+TGG | - | chr3_4:1523259-1523278 | None:intergenic | 40.0% |
| CCTGCACAATCACAATAAAC+AGG | - | chr3_4:1523281-1523300 | None:intergenic | 40.0% | |
| CCTGTTTATTGTGATTGTGC+AGG | + | chr3_4:1523278-1523297 | Msa0484220:intron | 40.0% | |
| TAAGGTATGTTAATCGCACC+AGG | - | chr3_4:1523334-1523353 | None:intergenic | 40.0% | |
| CTCAAACAAGAAGTGAAAGG+GGG | - | chr3_4:1523986-1524005 | None:intergenic | 40.0% | |
| ! | TATGCTGCTTGGACTCAAAA+TGG | + | chr3_4:1524237-1524256 | Msa0484220:CDS | 40.0% |
| CATAAAAAGGAAGGAGTGGA+TGG | + | chr3_4:1524335-1524354 | Msa0484220:three_prime_UTR | 40.0% | |
| TTCGAACCATGATCATTGAC+AGG | + | chr3_4:1524483-1524502 | Msa0484220:three_prime_UTR | 40.0% | |
| GTGTTCTGCCGTAGAATTAG+AGG | - | chr3_4:1522554-1522573 | None:intergenic | 45.0% | |
| TACCGGAAGTTGGAACACTT+TGG | - | chr3_4:1522785-1522804 | None:intergenic | 45.0% | |
| GCACGATGTGTGGTTTAAAG+GGG | + | chr3_4:1522899-1522918 | Msa0484220:intron | 45.0% | |
| GGGAATTTGGAGGAAGTTGT+TGG | + | chr3_4:1522919-1522938 | Msa0484220:CDS | 45.0% | |
| TGGACTGAAAGTCGAGTACA+CGG | + | chr3_4:1523125-1523144 | Msa0484220:intron | 45.0% | |
| ATTGTGATTGTGCAGGACCA+CGG | + | chr3_4:1523285-1523304 | Msa0484220:intron | 45.0% | |
| ACCACGGAAGAGTTTAATGC+TGG | + | chr3_4:1523301-1523320 | Msa0484220:CDS | 45.0% | |
| TCCAGCATTAAACTCTTCCG+TGG | - | chr3_4:1523305-1523324 | None:intergenic | 45.0% | |
| ! | TTTTGCAGGGTTGTCAGCTT+GGG | + | chr3_4:1523781-1523800 | Msa0484220:intron | 45.0% |
| GCTTGGGAAAAGGTCTATGA+TGG | + | chr3_4:1523797-1523816 | Msa0484220:CDS | 45.0% | |
| TGCATTGTATAGGGGTTCAC+CGG | + | chr3_4:1524192-1524211 | Msa0484220:intron | 45.0% | |
| TCTGAAGAAACCCTCTCTCT+TGG | + | chr3_4:1524417-1524436 | Msa0484220:three_prime_UTR | 45.0% | |
| ACACATCAAGCCAAGAGAGA+GGG | - | chr3_4:1524430-1524449 | None:intergenic | 45.0% | |
| AACACATCAAGCCAAGAGAG+AGG | - | chr3_4:1524431-1524450 | None:intergenic | 45.0% | |
| !!! | TATGTAATTTTTAAATTTAT+TGG | + | chr3_4:1523105-1523124 | Msa0484220:intron | 5.0% |
| AGGACGTGAACGAAAGCAAG+CGG | - | chr3_4:1522534-1522553 | None:intergenic | 50.0% | |
| GGCAGAACACGACCATAACA+AGG | + | chr3_4:1522564-1522583 | Msa0484220:CDS | 50.0% | |
| TTTAATGCTGGACACGCTCC+TGG | + | chr3_4:1523313-1523332 | Msa0484220:CDS | 50.0% | |
| AAAATCTCATGGTGCGGCGA+AGG | - | chr3_4:1523711-1523730 | None:intergenic | 50.0% | |
| ! | CTTTTGCAGGGTTGTCAGCT+TGG | + | chr3_4:1523780-1523799 | Msa0484220:intron | 50.0% |
| AGGGTTGTCAGCTTGGGAAA+AGG | + | chr3_4:1523787-1523806 | Msa0484220:intron | 50.0% | |
| ACCAGCTATGTCTGTGAGTC+CGG | - | chr3_4:1524214-1524233 | None:intergenic | 50.0% | |
| TAGCTGGTGGTTATGCTGCT+TGG | + | chr3_4:1524226-1524245 | Msa0484220:CDS | 50.0% | |
| ACGTGAACGAAAGCAAGCGG+CGG | - | chr3_4:1522531-1522550 | None:intergenic | 55.0% | |
| ! | ACACGCACTGGCACTGAAGT+TGG | - | chr3_4:1522949-1522968 | None:intergenic | 55.0% |
| GCTCACGAGCTTCTTCTAGC+TGG | + | chr3_4:1522970-1522989 | Msa0484220:CDS | 55.0% | |
| ACCGGACTCACAGACATAGC+TGG | + | chr3_4:1524210-1524229 | Msa0484220:CDS | 55.0% | |
| GGACTCACAGACATAGCTGG+TGG | + | chr3_4:1524213-1524232 | Msa0484220:CDS | 55.0% | |
| GCAAGCGGCGGAGACATCAA+AGG | - | chr3_4:1522519-1522538 | None:intergenic | 60.0% | |
| AGCTCGTGAGCTACACGCAC+TGG | - | chr3_4:1522961-1522980 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 1522277 | 1524770 | 1522277 | ID=Msa0484220;Name=Msa0484220 |
| chr3_4 | mRNA | 1522277 | 1524770 | 1522277 | ID=Msa0484220-mRNA-1;Parent=Msa0484220;Name=Msa0484220-mRNA-1;_AED=0.10;_eAED=0.10;_QI=194|1|1|1|0.85|0.75|8|492|185 |
| chr3_4 | exon | 1522277 | 1522352 | 1522277 | ID=Msa0484220-mRNA-1:exon:396;Parent=Msa0484220-mRNA-1 |
| chr3_4 | exon | 1522376 | 1522585 | 1522376 | ID=Msa0484220-mRNA-1:exon:397;Parent=Msa0484220-mRNA-1 |
| chr3_4 | exon | 1522724 | 1522801 | 1522724 | ID=Msa0484220-mRNA-1:exon:398;Parent=Msa0484220-mRNA-1 |
| chr3_4 | exon | 1522900 | 1523013 | 1522900 | ID=Msa0484220-mRNA-1:exon:399;Parent=Msa0484220-mRNA-1 |
| chr3_4 | exon | 1523300 | 1523373 | 1523300 | ID=Msa0484220-mRNA-1:exon:400;Parent=Msa0484220-mRNA-1 |
| chr3_4 | exon | 1523625 | 1523695 | 1523625 | ID=Msa0484220-mRNA-1:exon:401;Parent=Msa0484220-mRNA-1 |
| chr3_4 | exon | 1523789 | 1523842 | 1523789 | ID=Msa0484220-mRNA-1:exon:402;Parent=Msa0484220-mRNA-1 |
| chr3_4 | exon | 1524204 | 1524770 | 1524204 | ID=Msa0484220-mRNA-1:exon:403;Parent=Msa0484220-mRNA-1 |
| chr3_4 | five_prime_UTR | 1522277 | 1522352 | 1522277 | ID=Msa0484220-mRNA-1:five_prime_utr;Parent=Msa0484220-mRNA-1 |
| chr3_4 | five_prime_UTR | 1522376 | 1522493 | 1522376 | ID=Msa0484220-mRNA-1:five_prime_utr;Parent=Msa0484220-mRNA-1 |
| chr3_4 | CDS | 1522494 | 1522585 | 1522494 | ID=Msa0484220-mRNA-1:cds;Parent=Msa0484220-mRNA-1 |
| chr3_4 | CDS | 1522724 | 1522801 | 1522724 | ID=Msa0484220-mRNA-1:cds;Parent=Msa0484220-mRNA-1 |
| chr3_4 | CDS | 1522900 | 1523013 | 1522900 | ID=Msa0484220-mRNA-1:cds;Parent=Msa0484220-mRNA-1 |
| chr3_4 | CDS | 1523300 | 1523373 | 1523300 | ID=Msa0484220-mRNA-1:cds;Parent=Msa0484220-mRNA-1 |
| chr3_4 | CDS | 1523625 | 1523695 | 1523625 | ID=Msa0484220-mRNA-1:cds;Parent=Msa0484220-mRNA-1 |
| chr3_4 | CDS | 1523789 | 1523842 | 1523789 | ID=Msa0484220-mRNA-1:cds;Parent=Msa0484220-mRNA-1 |
| chr3_4 | CDS | 1524204 | 1524278 | 1524204 | ID=Msa0484220-mRNA-1:cds;Parent=Msa0484220-mRNA-1 |
| chr3_4 | three_prime_UTR | 1524279 | 1524770 | 1524279 | ID=Msa0484220-mRNA-1:three_prime_utr;Parent=Msa0484220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
