AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1286910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286910 MtrunA17_Chr8g0349671 95.638 298 12 1 1 298 1 297 0.0 584
Msa1286910 MtrunA17_Chr8g0349641 90.301 299 27 2 1 298 1 298 0.0 546
Msa1286910 MtrunA17_Chr8g0349651 88.433 268 29 2 31 298 10 275 5.75e-175 484
Msa1286910 MtrunA17_Chr5g0425391 70.470 298 85 3 1 298 1 295 1.94e-148 418
Msa1286910 MtrunA17_Chr8g0349811 58.667 300 120 3 1 298 1 298 2.80e-123 354
Msa1286910 MtrunA17_Chr8g0349751 58.940 302 117 4 1 298 51 349 1.16e-122 355
Msa1286910 MtrunA17_Chr8g0349781 58.333 300 121 3 1 298 1 298 2.54e-122 352
Msa1286910 MtrunA17_Chr7g0247011 58.863 299 109 5 1 298 1 286 3.07e-122 351
Msa1286910 MtrunA17_Chr8g0349771 57.807 301 121 4 1 298 1 298 3.29e-120 347
Msa1286910 MtrunA17_Chr8g0349761 58.419 291 115 4 7 294 8 295 3.17e-119 344
Msa1286910 MtrunA17_Chr8g0349801 58.904 292 116 3 1 290 1 290 4.21e-118 341
Msa1286910 MtrunA17_Chr8g0349851 56.811 301 125 3 1 298 1 299 1.27e-117 340
Msa1286910 MtrunA17_Chr8g0349701 57.143 294 121 3 1 294 1 289 2.36e-115 334
Msa1286910 MtrunA17_Chr8g0349831 56.522 299 125 3 3 298 4 300 5.96e-115 333
Msa1286910 MtrunA17_Chr8g0349721 57.770 296 116 5 1 294 1 289 6.24e-115 333
Msa1286910 MtrunA17_Chr7g0247031 57.823 294 109 6 7 298 8 288 2.72e-112 326
Msa1286910 MtrunA17_Chr7g0247041 57.823 294 117 5 7 298 6 294 5.57e-112 325
Msa1286910 MtrunA17_Chr8g0349741 56.856 299 116 6 1 298 1 287 7.27e-111 322
Msa1286910 MtrunA17_Chr3g0118511 48.495 299 144 6 7 298 3 298 6.03e-86 259
Msa1286910 MtrunA17_Chr7g0267881 55.882 238 71 4 7 239 9 217 3.56e-83 250
Msa1286910 MtrunA17_Chr3g0131521 40.199 301 143 8 9 298 37 311 4.70e-66 209
Msa1286910 MtrunA17_Chr1g0160511 41.196 301 140 8 9 298 42 316 3.22e-65 207
Msa1286910 MtrunA17_Chr8g0385581 37.542 301 154 8 9 298 39 316 3.10e-56 184
Msa1286910 MtrunA17_Chr5g0437701 54.264 129 57 2 170 298 2 128 2.24e-41 139
Msa1286910 MtrunA17_Chr4g0045691 38.068 176 95 6 134 298 1 173 2.36e-28 107
Msa1286910 MtrunA17_Chr4g0045711 53.333 90 31 4 9 90 24 110 3.69e-17 75.9
Msa1286910 MtrunA17_Chr4g0058731 25.385 260 130 7 9 258 51 256 2.74e-13 69.3
Msa1286910 MtrunA17_Chr6g0466681 25.773 291 170 8 9 297 69 315 3.18e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286910 AT3G61220.1 60.596 302 109 6 1 298 1 296 6.71e-120 346
Msa1286910 AT3G61220.2 60.473 296 107 6 7 298 14 303 4.56e-117 339
Msa1286910 AT3G61220.3 60.473 296 107 6 7 298 38 327 1.66e-116 338
Msa1286910 AT1G01800.1 56.566 297 124 4 4 298 2 295 1.09e-110 322
Msa1286910 AT2G24190.1 55.150 301 127 6 1 298 1 296 4.33e-110 321
Msa1286910 AT2G24190.2 55.254 295 124 6 7 298 12 301 5.84e-108 316
Msa1286910 AT1G01800.2 55.981 209 89 3 90 298 55 260 5.24e-74 228
Msa1286910 AT5G51030.1 39.535 301 145 8 9 298 40 314 9.19e-64 203
Msa1286910 AT3G59710.3 42.466 292 138 9 9 296 21 286 6.40e-60 193
Msa1286910 AT3G59710.1 42.466 292 138 9 9 296 31 296 8.24e-60 193
Msa1286910 AT3G59710.2 42.466 292 138 9 9 296 50 315 2.35e-59 192
Msa1286910 AT5G61830.1 41.060 302 142 8 9 298 39 316 2.41e-59 192
Msa1286910 AT5G61830.2 41.060 302 142 8 9 298 39 316 2.41e-59 192
Msa1286910 AT4G09750.1 28.146 302 147 10 10 297 47 292 9.39e-15 73.9
Msa1286910 AT5G50700.1 32.298 161 87 4 10 170 51 189 1.22e-12 67.8
Msa1286910 AT5G50600.1 32.298 161 87 4 10 170 51 189 1.22e-12 67.8

Find 77 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTAAAATAAAATTAAAA+TGG 0.209512 8_3:-35792257 None:intergenic
GAAGAAACATTGACAACTTT+TGG 0.257926 8_3:-35793792 None:intergenic
AGATATATGCAGGATAATTA+TGG 0.270797 8_3:+35794530 Msa1286910:three_prime_UTR
GACATCATCTATCCATTTCT+TGG 0.276596 8_3:+35794685 Msa1286910:three_prime_UTR
CAATAAATCCTTGATCAAAA+TGG 0.282362 8_3:-35794485 None:intergenic
CTACCTGATGGTAGTCCTTC+TGG 0.286806 8_3:+35794434 Msa1286910:CDS
TCTAGGTATGCAGTTGTTAC+AGG 0.295664 8_3:+35792451 Msa1286910:intron
GTAAACAATGCTGGAATTCC+TGG 0.304962 8_3:+35793256 Msa1286910:CDS
TGTTGCTTCTGCCATTGATA+TGG 0.329939 8_3:-35792308 None:intergenic
GGTACATCTTTAACTAGGTT+GGG 0.332080 8_3:-35794639 None:intergenic
GCCTAAAATAAAATTAAAAT+GGG 0.358661 8_3:-35792256 None:intergenic
ATTTGGAAAACTAGATATCT+TGG 0.368302 8_3:+35792681 Msa1286910:CDS
CAATGGCAGAAGCAACAAAA+AGG 0.374057 8_3:+35792314 Msa1286910:exon
TATGTAGTCATACTATTAAT+AGG 0.380899 8_3:-35794242 None:intergenic
GCATATTGATGGATACTTCT+TGG 0.385641 8_3:-35794309 None:intergenic
ATAGATGATGTCTACTAATA+TGG 0.399239 8_3:-35794674 None:intergenic
ACAAGTGGACGGTGAGGCTT+TGG 0.405380 8_3:+35793282 Msa1286910:CDS
ACCTAACTCAGTTTGTTCAT+AGG 0.408762 8_3:-35793697 None:intergenic
TCATAGATCATGCAAGTATA+AGG 0.408807 8_3:+35792632 Msa1286910:CDS
GGTATTAAAACAAACTACTA+TGG 0.413302 8_3:+35793717 Msa1286910:CDS
AAAATGGTGGCCAGATTGAT+TGG 0.424937 8_3:+35793655 Msa1286910:CDS
GATATATGCAGGATAATTAT+GGG 0.425157 8_3:+35794531 Msa1286910:three_prime_UTR
ATTTGCAGTATGCAAGCAAT+TGG 0.426094 8_3:+35792492 Msa1286910:CDS
ACAGGAGCAAACAAAGGAAT+AGG 0.427233 8_3:+35792469 Msa1286910:CDS
TTGAAACAGCTTTCTTTGCC+TGG 0.427853 8_3:+35792583 Msa1286910:CDS
ACCTATGAACAAACTGAGTT+AGG 0.431339 8_3:+35793696 Msa1286910:CDS
TGTTTGCAGAAACTTCCTAA+TGG 0.435253 8_3:+35794101 Msa1286910:intron
TCACCGTCCACTTGTGCTCC+AGG 0.436898 8_3:-35793274 None:intergenic
TTCTTCATCCATGGGAAAGT+TGG 0.438371 8_3:+35793809 Msa1286910:CDS
ACTTCCTTAGGCCAGCCATT+AGG 0.441378 8_3:-35794116 None:intergenic
TGTCAATGTTTCTTCATCCA+TGG 0.442196 8_3:+35793800 Msa1286910:CDS
ATTGATTCAGCACCTTCATC+AGG 0.451708 8_3:-35794395 None:intergenic
ATATCACTCAGTACTTCCTT+AGG 0.455700 8_3:-35794128 None:intergenic
TGCAGAAACTTCCTAATGGC+TGG 0.460626 8_3:+35794105 Msa1286910:intron
TGCAAGCAATTGGCTTCTAA+AGG 0.461232 8_3:+35792502 Msa1286910:CDS
TTTGCTTAGGTAAACAATGC+TGG 0.462288 8_3:+35793247 Msa1286910:intron
GTCAATGTTTCTTCATCCAT+GGG 0.469153 8_3:+35793801 Msa1286910:CDS
ATTGTGAGGACACCAAGAAA+TGG 0.472758 8_3:-35794697 None:intergenic
ACTGCATTGATGCATATTGA+TGG 0.473197 8_3:-35794320 None:intergenic
CCAAGGGTACATCTTTAACT+AGG 0.475964 8_3:-35794644 None:intergenic
GGGTACATCTTTAACTAGGT+TGG 0.485262 8_3:-35794640 None:intergenic
TAAGAGAATAAAGTTCGATC+AGG 0.486327 8_3:+35794608 Msa1286910:three_prime_UTR
TTGCTCTAAGTGCTTATACA+AGG 0.490586 8_3:+35794279 Msa1286910:CDS
ACAGATATAAATTACAATAC+AGG 0.491756 8_3:+35794362 Msa1286910:CDS
CTTCTCTTTAACCATATCAA+TGG 0.492861 8_3:+35792297 Msa1286910:exon
TTCATCCATGGGAAAGTTGG+AGG 0.493146 8_3:+35793812 Msa1286910:CDS
GCAAGCAATTGGCTTCTAAA+GGG 0.509794 8_3:+35792503 Msa1286910:CDS
TGCATCAATGCAGTATGTCC+AGG 0.517261 8_3:+35794329 Msa1286910:CDS
GTACATCTTTAACTAGGTTG+GGG 0.517988 8_3:-35794638 None:intergenic
AAGAAATCATACCACAGTAT+TGG 0.519317 8_3:-35793311 None:intergenic
AAAATGTGAAAGATATATGC+AGG 0.527842 8_3:+35794520 Msa1286910:three_prime_UTR
GGTTATTTAACACCTGATGA+AGG 0.538333 8_3:+35794383 Msa1286910:CDS
CCTAGTTAAAGATGTACCCT+TGG 0.539794 8_3:+35794644 Msa1286910:three_prime_UTR
TTATCAATTGTCTTTAAATG+TGG 0.544088 8_3:-35792179 None:intergenic
TGCTCTAAGTGCTTATACAA+GGG 0.545903 8_3:+35794280 Msa1286910:CDS
AAGTGCTTCTGTCAAGTCCT+TGG 0.549362 8_3:-35793742 None:intergenic
ACTTCCTAATGGCTGGCCTA+AGG 0.550318 8_3:+35794112 Msa1286910:CDS
CAGTAGTAGAAAACAAAGGT+TGG 0.558034 8_3:+35794219 Msa1286910:CDS
TGCTGAATCAATTGTGAGGT+TGG 0.563985 8_3:+35794406 Msa1286910:CDS
ACTTACCTCCAACTTTCCCA+TGG 0.565636 8_3:-35793817 None:intergenic
ACTAATATGGTGTGACACCA+AGG 0.571697 8_3:-35794661 None:intergenic
TGACCAGAAGGACTACCATC+AGG 0.583917 8_3:-35794437 None:intergenic
AACAAACTACTATGGAGCCA+AGG 0.591502 8_3:+35793725 Msa1286910:CDS
GAGCTTGAAAGCTGGAGAAG+TGG 0.610128 8_3:-35793768 None:intergenic
TGGAATTCCTGGAGCACAAG+TGG 0.626468 8_3:+35793267 Msa1286910:CDS
CTAATATGGTGTGACACCAA+GGG 0.640418 8_3:-35794660 None:intergenic
ATTCCTGGAGCACAAGTGGA+CGG 0.643422 8_3:+35793271 Msa1286910:CDS
AGGTTGGCATTGCTACCTGA+TGG 0.648903 8_3:+35794422 Msa1286910:CDS
TTTGGCTGCTGCCAATACTG+TGG 0.652336 8_3:+35793300 Msa1286910:CDS
GTTGTTACAGGAGCAAACAA+AGG 0.652694 8_3:+35792463 Msa1286910:CDS
GGTTCAGTAGTAGAAAACAA+AGG 0.658570 8_3:+35794215 Msa1286910:CDS
GAAGTGCTAGCAAATATGAG+TGG 0.665943 8_3:-35792278 None:intergenic
CCTAAAATAAAATTAAAATG+GGG 0.670428 8_3:-35792255 None:intergenic
TGGAGCACAAGTGGACGGTG+AGG 0.671657 8_3:+35793276 Msa1286910:CDS
ACTGCAAGAGATGAAAAGAG+AGG 0.675593 8_3:+35792541 Msa1286910:CDS
AAGGTGCTGAATCAATTGTG+AGG 0.744935 8_3:+35794402 Msa1286910:CDS
GGCTTCTAAAGGGATCACTG+TGG 0.806348 8_3:+35792513 Msa1286910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAGCTATTATTATA+AGG + chr8_3:35793158-35793177 Msa1286910:intron 10.0%
!! CCTAAAATAAAATTAAAATG+GGG - chr8_3:35792258-35792277 None:intergenic 15.0%
!! GCCTAAAATAAAATTAAAAT+GGG - chr8_3:35792259-35792278 None:intergenic 15.0%
!! TTTAATTGCATATATATGAA+GGG - chr8_3:35792379-35792398 None:intergenic 15.0%
!! ATTTAATTGCATATATATGA+AGG - chr8_3:35792380-35792399 None:intergenic 15.0%
!!! TTTCAGTTTTTTTAATTGTT+TGG - chr8_3:35793532-35793551 None:intergenic 15.0%
!!! CAATAAAAAATACACATTTT+TGG + chr8_3:35794716-35794735 Msa1286910:three_prime_UTR 15.0%
!! ATAGCAAAAAGAAACATTAT+TGG + chr8_3:35792104-35792123 Msa1286910:five_prime_UTR 20.0%
!! TTATCAATTGTCTTTAAATG+TGG - chr8_3:35792182-35792201 None:intergenic 20.0%
!!! CCCCATTTTAATTTTATTTT+AGG + chr8_3:35792255-35792274 Msa1286910:five_prime_UTR 20.0%
!! GGCCTAAAATAAAATTAAAA+TGG - chr8_3:35792260-35792279 None:intergenic 20.0%
!!! TTTTGAAGAATAAAAGGATA+AGG - chr8_3:35792354-35792373 None:intergenic 20.0%
!!! GATAGAGTATATCTAAATTT+TGG + chr8_3:35792742-35792761 Msa1286910:intron 20.0%
!!! GTATATCTAAATTTTGGATT+TGG + chr8_3:35792748-35792767 Msa1286910:intron 20.0%
!!! TGCAGATTTAAAATTGTTTT+TGG + chr8_3:35792859-35792878 Msa1286910:intron 20.0%
!!! AGATTTAAAATTGTTTTTGG+TGG + chr8_3:35792862-35792881 Msa1286910:intron 20.0%
!!! ATGCATTGTTTTTTCATTTA+TGG + chr8_3:35793049-35793068 Msa1286910:intron 20.0%
!!! AATTCAAGTTTTCTTGTTTT+TGG + chr8_3:35793625-35793644 Msa1286910:intron 20.0%
!!! TTTCTAAAGGATTTTAAAGA+GGG + chr8_3:35794194-35794213 Msa1286910:CDS 20.0%
!! TATGTAGTCATACTATTAAT+AGG - chr8_3:35794245-35794264 None:intergenic 20.0%
!! ACAGATATAAATTACAATAC+AGG + chr8_3:35794362-35794381 Msa1286910:CDS 20.0%
!!! AATGTGTATTTTTTATTGTG+AGG - chr8_3:35794714-35794733 None:intergenic 20.0%
!!! TGACATATTTTAAAACTCAA+GGG - chr8_3:35794743-35794762 None:intergenic 20.0%
!!! TTGACATATTTTAAAACTCA+AGG - chr8_3:35794744-35794763 None:intergenic 20.0%
!!! TTTTAAGTGAGTTGTATTTT+AGG + chr8_3:35794772-35794791 Msa1286910:three_prime_UTR 20.0%
!!! TTTAAGTGAGTTGTATTTTA+GGG + chr8_3:35794773-35794792 Msa1286910:three_prime_UTR 20.0%
!!! AGGGTATTTTGAAGAATAAA+AGG - chr8_3:35792360-35792379 None:intergenic 25.0%
!!! ACGTTGTTAATCTTTTTTCT+AGG + chr8_3:35792434-35792453 Msa1286910:intron 25.0%
!! GATTTTATCAAGAACCAATT+TGG + chr8_3:35792664-35792683 Msa1286910:CDS 25.0%
!!! AGATATCTAGTTTTCCAAAT+TGG - chr8_3:35792681-35792700 None:intergenic 25.0%
! ATTTGGAAAACTAGATATCT+TGG + chr8_3:35792681-35792700 Msa1286910:CDS 25.0%
!! AAGGTATCAATGAAACTTAA+TGG - chr8_3:35793111-35793130 None:intergenic 25.0%
! GCAAAATATTTCATTTGACA+AGG - chr8_3:35793130-35793149 None:intergenic 25.0%
!!! ATCTGTTTTTTCATACAAAG+TGG - chr8_3:35793562-35793581 None:intergenic 25.0%
!!! TTATTTTACTCCAATCAATC+TGG - chr8_3:35793668-35793687 None:intergenic 25.0%
! GGTATTAAAACAAACTACTA+TGG + chr8_3:35793717-35793736 Msa1286910:CDS 25.0%
! TTTGCTAACTTATTTACGTA+CGG + chr8_3:35793853-35793872 Msa1286910:intron 25.0%
!!! TAGTGGTTATATTAGTTTTC+AGG + chr8_3:35793892-35793911 Msa1286910:intron 25.0%
!!! AGTGGTTATATTAGTTTTCA+GGG + chr8_3:35793893-35793912 Msa1286910:intron 25.0%
!!! ACATCAAAGGATTTTTAAGA+AGG - chr8_3:35793935-35793954 None:intergenic 25.0%
!!! TGAAGCATTAATAAGTTTTC+AGG - chr8_3:35794000-35794019 None:intergenic 25.0%
! ACTTTGAACTATTATGCAAT+TGG + chr8_3:35794052-35794071 Msa1286910:intron 25.0%
!!! AGTTTTGAATCAGTTTCTAA+AGG + chr8_3:35794181-35794200 Msa1286910:CDS 25.0%
!!! GTTTCTAAAGGATTTTAAAG+AGG + chr8_3:35794193-35794212 Msa1286910:CDS 25.0%
! CAATAAATCCTTGATCAAAA+TGG - chr8_3:35794488-35794507 None:intergenic 25.0%
! AAAATGTGAAAGATATATGC+AGG + chr8_3:35794520-35794539 Msa1286910:three_prime_UTR 25.0%
! AGATATATGCAGGATAATTA+TGG + chr8_3:35794530-35794549 Msa1286910:three_prime_UTR 25.0%
! GATATATGCAGGATAATTAT+GGG + chr8_3:35794531-35794550 Msa1286910:three_prime_UTR 25.0%
! ATAGATGATGTCTACTAATA+TGG - chr8_3:35794677-35794696 None:intergenic 25.0%
!!! TTAAGTGAGTTGTATTTTAG+GGG + chr8_3:35794774-35794793 Msa1286910:three_prime_UTR 25.0%
CTTCTCTTTAACCATATCAA+TGG + chr8_3:35792297-35792316 Msa1286910:exon 30.0%
TCATAGATCATGCAAGTATA+AGG + chr8_3:35792632-35792651 Msa1286910:CDS 30.0%
CACTAAAGTAAGTGCATATT+TGG + chr8_3:35792802-35792821 Msa1286910:intron 30.0%
ATCTGCATAATCAATCACTT+TGG - chr8_3:35792846-35792865 None:intergenic 30.0%
! CTGTTGTTATGATTTGTGTT+TGG - chr8_3:35793009-35793028 None:intergenic 30.0%
ACAATGCATTCGAATATCAA+CGG - chr8_3:35793038-35793057 None:intergenic 30.0%
CAAATATTTGTGATCATTCG+AGG - chr8_3:35793216-35793235 None:intergenic 30.0%
TTGTTTACCTAAGCAAAGTT+TGG - chr8_3:35793244-35793263 None:intergenic 30.0%
AAGAAATCATACCACAGTAT+TGG - chr8_3:35793314-35793333 None:intergenic 30.0%
ATCGATTGAAGTAATAACCA+AGG - chr8_3:35793478-35793497 None:intergenic 30.0%
!!! GTTTTCTTGTTTTTGGTTTC+AGG + chr8_3:35793632-35793651 Msa1286910:intron 30.0%
!!! TGTTTTTGGTTTCAGGAAAA+TGG + chr8_3:35793639-35793658 Msa1286910:intron 30.0%
! GAAGAAACATTGACAACTTT+TGG - chr8_3:35793795-35793814 None:intergenic 30.0%
GAGAAATGTTAGTAAGTTAG+TGG + chr8_3:35793875-35793894 Msa1286910:intron 30.0%
! CATCAATCTTTTCTTCTGTA+AGG - chr8_3:35794160-35794179 None:intergenic 30.0%
!! AAGAGAAACCATTTTGATCA+AGG + chr8_3:35794477-35794496 Msa1286910:exon 30.0%
TAAGAGAATAAAGTTCGATC+AGG + chr8_3:35794608-35794627 Msa1286910:three_prime_UTR 30.0%
ATTTGCAGTATGCAAGCAAT+TGG + chr8_3:35792492-35792511 Msa1286910:CDS 35.0%
TGATGAAAAACAACAAGACC+AGG - chr8_3:35792604-35792623 None:intergenic 35.0%
!! TTTGGACTCAATTTTGAGAG+AGG + chr8_3:35792820-35792839 Msa1286910:intron 35.0%
TGAAACTCCAAACTTTGCTT+AGG + chr8_3:35793234-35793253 Msa1286910:intron 35.0%
TTTGCTTAGGTAAACAATGC+TGG + chr8_3:35793247-35793266 Msa1286910:intron 35.0%
!! TTAAACTGCCTTAGCTTTTC+GGG - chr8_3:35793339-35793358 None:intergenic 35.0%
!! GTTAAACTGCCTTAGCTTTT+CGG - chr8_3:35793340-35793359 None:intergenic 35.0%
! TCTAAAGCGACTTAAAACCT+TGG + chr8_3:35793458-35793477 Msa1286910:intron 35.0%
!!! TTTTGGTTTCAGGAAAATGG+TGG + chr8_3:35793642-35793661 Msa1286910:intron 35.0%
ACCTATGAACAAACTGAGTT+AGG + chr8_3:35793696-35793715 Msa1286910:CDS 35.0%
! ACCTAACTCAGTTTGTTCAT+AGG - chr8_3:35793700-35793719 None:intergenic 35.0%
TGTCAATGTTTCTTCATCCA+TGG + chr8_3:35793800-35793819 Msa1286910:CDS 35.0%
GTCAATGTTTCTTCATCCAT+GGG + chr8_3:35793801-35793820 Msa1286910:CDS 35.0%
TGTTTGCAGAAACTTCCTAA+TGG + chr8_3:35794101-35794120 Msa1286910:intron 35.0%
ATATCACTCAGTACTTCCTT+AGG - chr8_3:35794131-35794150 None:intergenic 35.0%
GGTTCAGTAGTAGAAAACAA+AGG + chr8_3:35794215-35794234 Msa1286910:CDS 35.0%
CAGTAGTAGAAAACAAAGGT+TGG + chr8_3:35794219-35794238 Msa1286910:CDS 35.0%
! TTGCTCTAAGTGCTTATACA+AGG + chr8_3:35794279-35794298 Msa1286910:CDS 35.0%
! TGCTCTAAGTGCTTATACAA+GGG + chr8_3:35794280-35794299 Msa1286910:CDS 35.0%
! GCATATTGATGGATACTTCT+TGG - chr8_3:35794312-35794331 None:intergenic 35.0%
! ACTGCATTGATGCATATTGA+TGG - chr8_3:35794323-35794342 None:intergenic 35.0%
! ATATCTGTTTTCACAAAGCC+TGG - chr8_3:35794350-35794369 None:intergenic 35.0%
GGTTATTTAACACCTGATGA+AGG + chr8_3:35794383-35794402 Msa1286910:CDS 35.0%
CTAACAAAAAAGTGACCAGA+AGG - chr8_3:35794452-35794471 None:intergenic 35.0%
GTACATCTTTAACTAGGTTG+GGG - chr8_3:35794641-35794660 None:intergenic 35.0%
GGTACATCTTTAACTAGGTT+GGG - chr8_3:35794642-35794661 None:intergenic 35.0%
GACATCATCTATCCATTTCT+TGG + chr8_3:35794685-35794704 Msa1286910:three_prime_UTR 35.0%
! GAAGTGCTAGCAAATATGAG+TGG - chr8_3:35792281-35792300 None:intergenic 40.0%
! TGTTGCTTCTGCCATTGATA+TGG - chr8_3:35792311-35792330 None:intergenic 40.0%
CAATGGCAGAAGCAACAAAA+AGG + chr8_3:35792314-35792333 Msa1286910:exon 40.0%
TCTAGGTATGCAGTTGTTAC+AGG + chr8_3:35792451-35792470 Msa1286910:intron 40.0%
GTTGTTACAGGAGCAAACAA+AGG + chr8_3:35792463-35792482 Msa1286910:CDS 40.0%
ACAGGAGCAAACAAAGGAAT+AGG + chr8_3:35792469-35792488 Msa1286910:CDS 40.0%
! TGCAAGCAATTGGCTTCTAA+AGG + chr8_3:35792502-35792521 Msa1286910:CDS 40.0%
! GCAAGCAATTGGCTTCTAAA+GGG + chr8_3:35792503-35792522 Msa1286910:CDS 40.0%
ACTGCAAGAGATGAAAAGAG+AGG + chr8_3:35792541-35792560 Msa1286910:CDS 40.0%
TTGAAACAGCTTTCTTTGCC+TGG + chr8_3:35792583-35792602 Msa1286910:CDS 40.0%
GTAAACAATGCTGGAATTCC+TGG + chr8_3:35793256-35793275 Msa1286910:CDS 40.0%
TTTCTTTCCCCGAAAAGCTA+AGG + chr8_3:35793328-35793347 Msa1286910:intron 40.0%
!! TAAACTGCCTTAGCTTTTCG+GGG - chr8_3:35793338-35793357 None:intergenic 40.0%
CACAAAGATTGACGTTGTTG+CGG - chr8_3:35793424-35793443 None:intergenic 40.0%
AAAATGGTGGCCAGATTGAT+TGG + chr8_3:35793655-35793674 Msa1286910:CDS 40.0%
AACAAACTACTATGGAGCCA+AGG + chr8_3:35793725-35793744 Msa1286910:CDS 40.0%
TTCTTCATCCATGGGAAAGT+TGG + chr8_3:35793809-35793828 Msa1286910:CDS 40.0%
! ATTGATTCAGCACCTTCATC+AGG - chr8_3:35794398-35794417 None:intergenic 40.0%
!! AAGGTGCTGAATCAATTGTG+AGG + chr8_3:35794402-35794421 Msa1286910:CDS 40.0%
TGCTGAATCAATTGTGAGGT+TGG + chr8_3:35794406-35794425 Msa1286910:CDS 40.0%
GGGTACATCTTTAACTAGGT+TGG - chr8_3:35794643-35794662 None:intergenic 40.0%
! CCAAGGGTACATCTTTAACT+AGG - chr8_3:35794647-35794666 None:intergenic 40.0%
CCTAGTTAAAGATGTACCCT+TGG + chr8_3:35794644-35794663 Msa1286910:three_prime_UTR 40.0%
CTAATATGGTGTGACACCAA+GGG - chr8_3:35794663-35794682 None:intergenic 40.0%
ACTAATATGGTGTGACACCA+AGG - chr8_3:35794664-35794683 None:intergenic 40.0%
ATTGTGAGGACACCAAGAAA+TGG - chr8_3:35794700-35794719 None:intergenic 40.0%
AAGTGCTTCTGTCAAGTCCT+TGG - chr8_3:35793745-35793764 None:intergenic 45.0%
! CTTTTGGTGAGCTTGAAAGC+TGG - chr8_3:35793779-35793798 None:intergenic 45.0%
TTCATCCATGGGAAAGTTGG+AGG + chr8_3:35793812-35793831 Msa1286910:CDS 45.0%
ACTTACCTCCAACTTTCCCA+TGG - chr8_3:35793820-35793839 None:intergenic 45.0%
AGTGAGCTAAGGGACATCAA+AGG - chr8_3:35793948-35793967 None:intergenic 45.0%
CGGCTTGATTAGTGAGCTAA+GGG - chr8_3:35793958-35793977 None:intergenic 45.0%
!! GAGTTTCGAGTTCAAACACG+CGG - chr8_3:35793978-35793997 None:intergenic 45.0%
TGCAGAAACTTCCTAATGGC+TGG + chr8_3:35794105-35794124 Msa1286910:intron 45.0%
TGCATCAATGCAGTATGTCC+AGG + chr8_3:35794329-35794348 Msa1286910:CDS 45.0%
! GGCTTCTAAAGGGATCACTG+TGG + chr8_3:35792513-35792532 Msa1286910:CDS 50.0%
TGGAATTCCTGGAGCACAAG+TGG + chr8_3:35793267-35793286 Msa1286910:CDS 50.0%
ATTCCTGGAGCACAAGTGGA+CGG + chr8_3:35793271-35793290 Msa1286910:CDS 50.0%
TTTGGCTGCTGCCAATACTG+TGG + chr8_3:35793300-35793319 Msa1286910:CDS 50.0%
!! GTCGCTTTAGAAGACGCAGT+TGG - chr8_3:35793449-35793468 None:intergenic 50.0%
GAGCTTGAAAGCTGGAGAAG+TGG - chr8_3:35793771-35793790 None:intergenic 50.0%
GCGGCTTGATTAGTGAGCTA+AGG - chr8_3:35793959-35793978 None:intergenic 50.0%
!! ACTTCCTAATGGCTGGCCTA+AGG + chr8_3:35794112-35794131 Msa1286910:CDS 50.0%
ACTTCCTTAGGCCAGCCATT+AGG - chr8_3:35794119-35794138 None:intergenic 50.0%
AGGTTGGCATTGCTACCTGA+TGG + chr8_3:35794422-35794441 Msa1286910:CDS 50.0%
CTACCTGATGGTAGTCCTTC+TGG + chr8_3:35794434-35794453 Msa1286910:CDS 50.0%
TGACCAGAAGGACTACCATC+AGG - chr8_3:35794440-35794459 None:intergenic 50.0%
ACAAGTGGACGGTGAGGCTT+TGG + chr8_3:35793282-35793301 Msa1286910:CDS 55.0%
TCACCGTCCACTTGTGCTCC+AGG - chr8_3:35793277-35793296 None:intergenic 60.0%
TGGAGCACAAGTGGACGGTG+AGG + chr8_3:35793276-35793295 Msa1286910:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 35792078 35794804 35792078 ID=Msa1286910;Name=Msa1286910
chr8_3 mRNA 35792078 35794804 35792078 ID=Msa1286910-mRNA-1;Parent=Msa1286910;Name=Msa1286910-mRNA-1;_AED=0.27;_eAED=0.27;_QI=238|1|1|1|1|1|5|311|298
chr8_3 exon 35792078 35792335 35792078 ID=Msa1286910-mRNA-1:exon:10537;Parent=Msa1286910-mRNA-1
chr8_3 exon 35792456 35792702 35792456 ID=Msa1286910-mRNA-1:exon:10538;Parent=Msa1286910-mRNA-1
chr8_3 exon 35793256 35793321 35793256 ID=Msa1286910-mRNA-1:exon:10539;Parent=Msa1286910-mRNA-1
chr8_3 exon 35793654 35793833 35793654 ID=Msa1286910-mRNA-1:exon:10540;Parent=Msa1286910-mRNA-1
chr8_3 exon 35794110 35794804 35794110 ID=Msa1286910-mRNA-1:exon:10541;Parent=Msa1286910-mRNA-1
chr8_3 five_prime_UTR 35792078 35792315 35792078 ID=Msa1286910-mRNA-1:five_prime_utr;Parent=Msa1286910-mRNA-1
chr8_3 CDS 35792316 35792335 35792316 ID=Msa1286910-mRNA-1:cds;Parent=Msa1286910-mRNA-1
chr8_3 CDS 35792456 35792702 35792456 ID=Msa1286910-mRNA-1:cds;Parent=Msa1286910-mRNA-1
chr8_3 CDS 35793256 35793321 35793256 ID=Msa1286910-mRNA-1:cds;Parent=Msa1286910-mRNA-1
chr8_3 CDS 35793654 35793833 35793654 ID=Msa1286910-mRNA-1:cds;Parent=Msa1286910-mRNA-1
chr8_3 CDS 35794110 35794493 35794110 ID=Msa1286910-mRNA-1:cds;Parent=Msa1286910-mRNA-1
chr8_3 three_prime_UTR 35794494 35794804 35794494 ID=Msa1286910-mRNA-1:three_prime_utr;Parent=Msa1286910-mRNA-1
Gene Sequence

>Msa1286910

ATGGCAGAAGCAACAAAAAGGTATGCAGTTGTTACAGGAGCAAACAAAGGAATAGGATTTGCAGTATGCAAGCAATTGGCTTCTAAAGGGATCACTGTGGTGCTTACTGCAAGAGATGAAAAGAGAGGTCTTGAAGCTGTTGAGAAATTGAAACAGCTTTCTTTGCCTGGTCTTGTTGTTTTTCATCAACTTGATGTCATAGATCATGCAAGTATAAGGTCATTTGTAGATTTTATCAAGAACCAATTTGGAAAACTAGATATCTTGGTAAACAATGCTGGAATTCCTGGAGCACAAGTGGACGGTGAGGCTTTGGCTGCTGCCAATACTGTGGAAAATGGTGGCCAGATTGATTGGAGTAAAATAATAACTCAAACCTATGAACAAACTGAGTTAGGTATTAAAACAAACTACTATGGAGCCAAGGACTTGACAGAAGCACTTATTCCACTTCTCCAGCTTTCAAGCTCACCAAAAGTTGTCAATGTTTCTTCATCCATGGGAAAGTTGGAGAAACTTCCTAATGGCTGGCCTAAGGAAGTACTGAGTGATATCAAAAACCTTACAGAAGAAAAGATTGATGAAGTTTTGAATCAGTTTCTAAAGGATTTTAAAGAGGGTTCAGTAGTAGAAAACAAAGGTTGGCCTATTAATAGTATGACTACATATATTATCTCAAAAGTTGCTCTAAGTGCTTATACAAGGGTTGCAGCCAAGAAGTATCCATCAATATGCATCAATGCAGTATGTCCAGGCTTTGTGAAAACAGATATAAATTACAATACAGGTTATTTAACACCTGATGAAGGTGCTGAATCAATTGTGAGGTTGGCATTGCTACCTGATGGTAGTCCTTCTGGTCACTTTTTTGTTAGAAGTGAAGAGAAACCATTTTGA

Protein sequence

>Msa1286910

MAEATKRYAVVTGANKGIGFAVCKQLASKGITVVLTARDEKRGLEAVEKLKQLSLPGLVVFHQLDVIDHASIRSFVDFIKNQFGKLDILVNNAGIPGAQVDGEALAAANTVENGGQIDWSKIITQTYEQTELGIKTNYYGAKDLTEALIPLLQLSSSPKVVNVSSSMGKLEKLPNGWPKEVLSDIKNLTEEKIDEVLNQFLKDFKEGSVVENKGWPINSMTTYIISKVALSAYTRVAAKKYPSICINAVCPGFVKTDINYNTGYLTPDEGAESIVRLALLPDGSPSGHFFVRSEEKPF*