AlfalfaGEDB | Msa0330970

M. sativa cultivar zhongmu-4 / Msa0330970

KEGG: K07426|K07428|K10717|K17873|K20660
GO: -
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0330970	XP_013464434.2	94.767	516	27	0	1	516	30	545	0.0	1018

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0330970	sp\|Q2MJ19\|C7A68_MEDTR	69.336	512	157	0	5	516	9	520	0.0	781

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0330970	A0A396JEP9	94.767	516	27	0	1	516	30	545	0.0	1018

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0330970	0.832413	9.588277e-56	-8.615850e-47
Msa0002690	Msa0330970	0.812080	5.075786e-51	-8.615850e-47
Msa0002700	Msa0330970	0.800922	1.147970e-48	-8.615850e-47
Msa0004180	Msa0330970	0.826141	3.192762e-54	-8.615850e-47
Msa0007570	Msa0330970	0.814174	1.761960e-51	-8.615850e-47
Msa0007810	Msa0330970	0.817509	3.178084e-52	-8.615850e-47
Msa0009560	Msa0330970	0.814745	1.317252e-51	-8.615850e-47
Msa0009800	Msa0330970	0.810886	9.220640e-51	-8.615850e-47
Msa0009890	Msa0330970	0.812073	5.092018e-51	-8.615850e-47
Msa0011060	Msa0330970	0.839486	1.540134e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0330970	MtrunA17_Chr2g0313751	94.767	516	27	0	1	516	30	545	1018
Msa0330970	MtrunA17_Chr2g0313761	86.628	516	66	1	1	516	1	513	884
Msa0330970	MtrunA17_Chr5g0446131	77.907	516	114	0	1	516	1	516	862
Msa0330970	MtrunA17_Chr2g0313821	73.386	511	135	1	7	516	8	518	799
Msa0330970	MtrunA17_Chr2g0313801	71.760	517	144	2	1	515	1	517	786
Msa0330970	MtrunA17_Chr2g0307301	69.336	512	157	0	5	516	9	520	781
Msa0330970	MtrunA17_Chr2g0307291	69.336	512	157	0	5	516	9	520	773
Msa0330970	MtrunA17_Chr2g0313781	69.187	529	149	3	1	515	1	529	769
Msa0330970	MtrunA17_Chr2g0313791	68.472	517	156	3	1	515	1	512	758
Msa0330970	MtrunA17_Chr2g0313811	71.567	517	134	2	12	515	13	529	754

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0330970	AT3G14690.1	54.247	518	227	4	1	514	1	512	615
Msa0330970	AT3G14690.2	54.247	518	227	4	1	514	36	547	615
Msa0330970	AT3G14620.1	57.086	501	202	5	18	514	24	515	594
Msa0330970	AT3G14680.1	55.645	496	212	4	21	514	23	512	594
Msa0330970	AT3G14610.1	55.600	500	213	4	18	514	19	512	590
Msa0330970	AT3G14660.1	55.040	496	215	3	21	514	23	512	589
Msa0330970	AT3G14650.1	54.435	496	218	3	21	514	23	512	583
Msa0330970	AT3G14640.1	54.819	498	215	4	21	514	23	514	580
Msa0330970	AT3G14640.2	54.819	498	215	4	21	514	45	536	580
Msa0330970	AT3G14630.2	52.549	510	234	3	7	514	60	563	567

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Find 110 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTATAATTGGGCTT+TGG	0.296209	2_4:-46251780	None:intergenic
AAATCTTATAATTGGGCTTT+GGG	0.289420	2_4:-46251779	None:intergenic
AAATGAAAACAACAAGGATG+TGG	0.503168	2_4:+46252917	Msa0330970:CDS
AACTCTTCCATTTGTTGCTT+TGG	0.235150	2_4:-46253546	None:intergenic
AACTTGAAAATCTTATAATT+GGG	0.395226	2_4:-46251786	None:intergenic
AAGAAAATCTCCACTCCAGC+AGG	0.477107	2_4:-46253437	None:intergenic
AAGAACCTCGTACAAAATCA+TGG	0.543952	2_4:-46253342	None:intergenic
AAGAATTCTTATATTTGGTT+TGG	0.349168	2_4:+46251687	Msa0330970:CDS
AAGAGCTTCTCTAGCTTCTT+TGG	0.205569	2_4:-46250511	None:intergenic
AATGAAAACAACAAGGATGT+GGG	0.595671	2_4:+46252918	Msa0330970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCATTCTCAGTTTGTAAT+TGG	-	chr2_4:46250410-46250429	None:intergenic	30.0%
ATTACAAACTGAGAATGGAA+TGG	+	chr2_4:46250410-46250429	Msa0330970:exon	30.0%
TTACAAACTGAGAATGGAAT+GGG	+	chr2_4:46250411-46250430	Msa0330970:exon	30.0%
CAACATAGTGTGAAAATTCA+TGG	+	chr2_4:46250673-46250692	Msa0330970:CDS	30.0%
AAAAGAAAGACGACATGTTA+TGG	-	chr2_4:46250735-46250754	None:intergenic	30.0%
TTGATTGATGTCAACTCAAA+CGG	-	chr2_4:46251026-46251045	None:intergenic	30.0%
AGAGATTATGTATCTAGTAG+AGG	-	chr2_4:46251334-46251353	None:intergenic	30.0%
TCAATATGCTTCCTAGATTA+TGG	+	chr2_4:46251469-46251488	Msa0330970:intron	30.0%
AATGGAAGTTTCTTACAAGA+TGG	+	chr2_4:46251551-46251570	Msa0330970:intron	30.0%
CAGGGAAGAATTCTTATATT+TGG	+	chr2_4:46251682-46251701	Msa0330970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	46250388	46253882	46250388	ID=Msa0330970;Name=Msa0330970
chr2_4	mRNA	46250388	46253882	46250388	ID=Msa0330970-mRNA-1;Parent=Msa0330970;Name=Msa0330970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=36\|1\|1\|1\|1\|1\|5\|113\|516
chr2_4	exon	46250388	46250694	46250388	ID=Msa0330970-mRNA-1:exon:13969;Parent=Msa0330970-mRNA-1
chr2_4	exon	46251685	46251899	46251685	ID=Msa0330970-mRNA-1:exon:13970;Parent=Msa0330970-mRNA-1
chr2_4	exon	46252417	46252661	46252417	ID=Msa0330970-mRNA-1:exon:13971;Parent=Msa0330970-mRNA-1
chr2_4	exon	46252749	46253136	46252749	ID=Msa0330970-mRNA-1:exon:13972;Parent=Msa0330970-mRNA-1
chr2_4	exon	46253338	46253882	46253338	ID=Msa0330970-mRNA-1:exon:13973;Parent=Msa0330970-mRNA-1
chr2_4	five_prime_UTR	46250388	46250423	46250388	ID=Msa0330970-mRNA-1:five_prime_utr;Parent=Msa0330970-mRNA-1
chr2_4	CDS	46250424	46250694	46250424	ID=Msa0330970-mRNA-1:cds;Parent=Msa0330970-mRNA-1
chr2_4	CDS	46251685	46251899	46251685	ID=Msa0330970-mRNA-1:cds;Parent=Msa0330970-mRNA-1
chr2_4	CDS	46252417	46252661	46252417	ID=Msa0330970-mRNA-1:cds;Parent=Msa0330970-mRNA-1
chr2_4	CDS	46252749	46253136	46252749	ID=Msa0330970-mRNA-1:cds;Parent=Msa0330970-mRNA-1
chr2_4	CDS	46253338	46253769	46253338	ID=Msa0330970-mRNA-1:cds;Parent=Msa0330970-mRNA-1
chr2_4	three_prime_UTR	46253770	46253882	46253770	ID=Msa0330970-mRNA-1:three_prime_utr;Parent=Msa0330970-mRNA-1

Gene Sequence

>Msa0330970

ATGGAATGGGTTTCTGGGATTATTCTCATCGCTATAACACTTGGTTTGATATGGGCATGGAAAGTGTTGAATTTGTTGTGGTTGAAGCCAAAGAAGCTAGAGAAGCTCTTAAGAGAACAAGGCCTTCAAGGGAATTCATATAGGATTTTGCTTGGGGACATAAAGGATCTTTTTAAGATGGAAAAAGAAGCCAAATCAAAATCCATGAATCTCTCCGATGATATAACACCACGTGTAATTCCCTACATCCAACATAGTGTGAAAATTCATGGGAAGAATTCTTATATTTGGTTTGGAATAAAACCAAGGGTGACTCTCACAGAACCTGAGCAAATAAAAGATGTATTGAATAAGATCTTTGAATTCCCAAAGCCCAATTATAAGATTTTCAAGTTACTAGCTACTGGACTTGCTAATTATGAGGGAGAAAAGTGGAGCAAGCATAGAAAGCTAATCAACCCTGCTTTCCATTTAGAAAAGTTGAAGATTATGACCCCGGCTTTCTTCACAAGTTGCAATGATTTGATTAACAAATGGGAGGAAATGTTGTCTTCGGATGGATCATGTGAAATAGACATATGGCCTTCCCTGCAAAATTTAGCAAGTGATGCTATTTCTCGAACAGCGTTTGGAAGTAGTTATGAAGAAGGAAAAAGAATATTTCAACTTCAAAGAGAGCAAGCTGAACTTATAGTGAAAGTTGTCATGAAATCTATCGTCCCTTTATGGATGTTTTTACCTACAATTGTCCATAGAAGGATGAACAAAATTGACAAAGAAATAAACTCTTCGCTTAAAGATATGATTAACAAGAGGGAGAAATCGTTAAAGGCAGGTGAGCCCGCTAGGAATGACTTATTGAGCATTCTTCTTGATTCAAATCGCAAGGAAATTGACGAAAATGAAAACAACAAGGATGTGGGAATGAGTCTTGATGATGTAGTCGAGGAATGCAAGTTGTTCCACTTTGCAGGTGCAGAGACTACTTCAGTTTTGCTTGTTTGGGCAATGATATTATTGAGTAGGTACCCTGATTGGCAAACACGTGCGAGGGAGGAAGTGTTACATCTCTTTGGCGACAGAAAACCAGATTTTGATGGGCTAAATAACCTAAAAATCGTCACCATGATTTTGTACGAGGTTCTTAGGTTATACCCTCCCGTAGTTGGCCTTGCTCGAAATGTTGAGAAAGATGTGAAACTTGGAAATCTAACACTACCTGCTGGAGTGGAGATTTTCTTACCAATTCTTTTGATTCACCATGACTGCGAACTATGGGGTGATGATGCTAAAATGTTCAATCCTGAAAGATTTTCGGGAGGAATTTCCAAAGCAACAAATGGAAGAGTTTCATTTTTTCCATTTGGATGGGGTCCTAGAATTTGCATTGGACAAAACTTTTCCCTAATGGAAGCAAAGATGGCATTGTCAATGATTTTGCAACATTTTTCGTTTGAACTTTCACCGACCTATGCTCATGCTCCATCCTCTACGATCACTCTTCAGCCACAATATGGCGCTCATATTATTATACGCAAACTGGAAACATAA

Protein sequence

>Msa0330970

MEWVSGIILIAITLGLIWAWKVLNLLWLKPKKLEKLLREQGLQGNSYRILLGDIKDLFKMEKEAKSKSMNLSDDITPRVIPYIQHSVKIHGKNSYIWFGIKPRVTLTEPEQIKDVLNKIFEFPKPNYKIFKLLATGLANYEGEKWSKHRKLINPAFHLEKLKIMTPAFFTSCNDLINKWEEMLSSDGSCEIDIWPSLQNLASDAISRTAFGSSYEEGKRIFQLQREQAELIVKVVMKSIVPLWMFLPTIVHRRMNKIDKEINSSLKDMINKREKSLKAGEPARNDLLSILLDSNRKEIDENENNKDVGMSLDDVVEECKLFHFAGAETTSVLLVWAMILLSRYPDWQTRAREEVLHLFGDRKPDFDGLNNLKIVTMILYEVLRLYPPVVGLARNVEKDVKLGNLTLPAGVEIFLPILLIHHDCELWGDDAKMFNPERFSGGISKATNGRVSFFPFGWGPRICIGQNFSLMEAKMALSMILQHFSFELSPTYAHAPSSTITLQPQYGAHIIIRKLET*