AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794130 MtrunA17_Chr5g0395171 94.479 163 8 1 1 162 1 163 2.82e-109 308
Msa0794130 MtrunA17_Chr5g0407361 43.564 101 51 3 50 145 51 150 9.89e-18 75.5
Msa0794130 MtrunA17_Chr3g0144161 42.857 98 52 3 61 156 68 163 4.25e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794130 AT5G16660.1 53.459 159 69 4 6 160 8 165 1.27e-50 160
Msa0794130 AT5G16660.2 54.375 160 66 6 6 161 8 164 4.29e-46 148
Msa0794130 AT3G02900.1 48.466 163 68 5 6 161 7 160 2.47e-41 136
Msa0794130 AT3G02900.2 51.163 129 54 3 40 161 40 166 8.73e-37 125
Msa0794130 AT1G42960.1 41.228 114 59 4 49 156 51 162 1.90e-19 80.5

Find 68 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTGCTGGCTTTCTTC+TGG 0.108341 5_3:-5951438 Msa0794130:CDS
GTCAACGATACATCGAAAAT+TGG 0.187441 5_3:-5949741 Msa0794130:three_prime_UTR
CTGCTAAATGAAGATGAATA+TGG 0.203723 5_3:-5950180 Msa0794130:CDS
CTTCAAATGCCTTCAAATTC+AGG 0.204641 5_3:+5949789 None:intergenic
TACTGTCCATGGAAATAAAA+TGG 0.263122 5_3:+5949636 None:intergenic
AGAGGTGGGGATTTGGTTGC+TGG 0.280443 5_3:-5951449 Msa0794130:CDS
GTGTTTGTGTTTGTGGTAAT+CGG 0.283600 5_3:+5952887 None:intergenic
TAAATCAATGTCACGCGATT+AGG 0.289541 5_3:-5952948 Msa0794130:five_prime_UTR
GACTGTCAACGTTTGTGTTT+TGG 0.294312 5_3:-5949545 Msa0794130:three_prime_UTR
AAAATATACAGTATGGATTA+TGG 0.296871 5_3:-5949613 Msa0794130:three_prime_UTR
TTGGTTGCTGGCTTTCTTCT+GGG 0.303767 5_3:-5951437 Msa0794130:CDS
AAGCTGCGAATGTTTGTTAC+AGG 0.313148 5_3:-5949360 Msa0794130:three_prime_UTR
CTGCACGAACCGGTGAAATA+AGG 0.322738 5_3:+5952339 None:intergenic
TGATAACAGAGGTGGGGATT+TGG 0.357687 5_3:-5951456 Msa0794130:CDS
AGAAGCTGTGTTTGTGTTTG+TGG 0.364008 5_3:+5952880 None:intergenic
AGCCCTTCGTCATAATAATA+AGG 0.364499 5_3:+5950135 None:intergenic
ATTCAGGATCACTTTCTAAA+GGG 0.373701 5_3:+5949805 None:intergenic
GCGCCATTATCGATTTCTTC+AGG 0.380646 5_3:-5952803 Msa0794130:intron
TATCAATGGCAGAATTTAGT+TGG 0.383082 5_3:+5949874 None:intergenic
CGGTGAAATAAGGTTCCTTC+TGG 0.390363 5_3:+5952349 None:intergenic
AAAGCTGTCAAAATCTTTAG+TGG 0.399963 5_3:-5949660 Msa0794130:three_prime_UTR
GAAAGTGATCCTGAATTTGA+AGG 0.404369 5_3:-5949798 Msa0794130:CDS
TTGGCCTATCTTATCATTCA+AGG 0.409252 5_3:+5949893 None:intergenic
AAGCGTAATTCATCTGTGTT+TGG 0.421907 5_3:-5952413 Msa0794130:CDS
AATTATATCAATAGAGGGTC+TGG 0.431308 5_3:+5949496 None:intergenic
AATTCAGGATCACTTTCTAA+AGG 0.440983 5_3:+5949804 None:intergenic
ATAATAATAAGGTGGTCTTC+TGG 0.441088 5_3:+5950146 None:intergenic
TACCGTTGTTCTGCACGAAC+CGG 0.449371 5_3:+5952329 None:intergenic
CTTTGAACAGCAGCAAGCTT+AGG 0.449964 5_3:+5952389 None:intergenic
GTTTCTGAATGCAGAGGACC+AGG 0.463024 5_3:-5949920 Msa0794130:intron
TGCTAAATGAAGATGAATAT+GGG 0.463822 5_3:-5950179 Msa0794130:CDS
TTTCTTCATTCTCTCTCCCA+TGG 0.464488 5_3:-5952837 Msa0794130:exon
GTGTTGGTGCTGGATTGATA+TGG 0.467628 5_3:-5949685 Msa0794130:three_prime_UTR
TGACCTGAAGAAATCGATAA+TGG 0.468078 5_3:+5952800 None:intergenic
TCAACGATACATCGAAAATT+GGG 0.470889 5_3:-5949740 Msa0794130:three_prime_UTR
TGTTTGTGTTTGTGGTAATC+GGG 0.474314 5_3:+5952888 None:intergenic
GAGACCTTGAATGATAAGAT+AGG 0.479761 5_3:-5949897 Msa0794130:CDS
CAGAAGGAACCTTATTTCAC+CGG 0.501192 5_3:-5952348 Msa0794130:CDS
ATGTTATTTGACAGTTTGAA+AGG 0.501388 5_3:-5949714 Msa0794130:three_prime_UTR
CTTATCATTCAAGGTCTCCC+TGG 0.516050 5_3:+5949902 None:intergenic
AATAAGAAACAGACTACTGC+TGG 0.525540 5_3:+5949572 None:intergenic
CTAAGCTTGCTGCTGTTCAA+AGG 0.526007 5_3:-5952388 Msa0794130:CDS
CACCTTATTATTATGACGAA+GGG 0.542517 5_3:-5950137 Msa0794130:CDS
ACGTACAGATATATTATCAA+TGG 0.553012 5_3:+5949860 None:intergenic
AAGATGAATATGGGTTTCGT+AGG 0.554302 5_3:-5950170 Msa0794130:CDS
TAAGGTTCCTTCTGGTCACA+AGG 0.558149 5_3:+5952357 None:intergenic
ATTTGTGTAAAAGAAAATTG+AGG 0.558500 5_3:+5949285 None:intergenic
AGGAGAAGAGAATTGCTCTA+GGG 0.559216 5_3:-5952979 None:intergenic
TTCAGGATCACTTTCTAAAG+GGG 0.565814 5_3:+5949806 None:intergenic
CGTTGACAAGAGTATCGAGC+TGG 0.568983 5_3:+5949757 None:intergenic
CTTTCTAAAGGGGCAGCAGT+AGG 0.569227 5_3:+5949816 None:intergenic
CACCGGTTCGTGCAGAACAA+CGG 0.572053 5_3:-5952331 Msa0794130:intron
TGGCGCGAATGAAGTTGCCA+TGG 0.574110 5_3:+5952820 None:intergenic
AATCAAACCTTGTGACCAGA+AGG 0.589168 5_3:-5952364 Msa0794130:CDS
CCACCTTATTATTATGACGA+AGG 0.599010 5_3:-5950138 Msa0794130:CDS
GTTGCTGGCTTTCTTCTGGG+TGG 0.601949 5_3:-5951434 Msa0794130:CDS
TTGTGCAGTGATAACAGAGG+TGG 0.604543 5_3:-5951464 Msa0794130:intron
TTATTATGACGAAGGGCTAG+AGG 0.609430 5_3:-5950130 Msa0794130:intron
TGTGCAGTGATAACAGAGGT+GGG 0.614866 5_3:-5951463 Msa0794130:intron
AGATGAATATGGGTTTCGTA+GGG 0.632129 5_3:-5950169 Msa0794130:CDS
GGCGCGAATGAAGTTGCCAT+GGG 0.638975 5_3:+5952821 None:intergenic
AATATATCTGTACGTCTGAG+AGG 0.656883 5_3:-5949852 Msa0794130:CDS
GTGCAGTGATAACAGAGGTG+GGG 0.664089 5_3:-5951462 Msa0794130:intron
CCTTCGTCATAATAATAAGG+TGG 0.668403 5_3:+5950138 None:intergenic
TTTCTGAATGCAGAGGACCA+GGG 0.699975 5_3:-5949919 Msa0794130:intron
ATCGGGCGAGTATTACGAGG+AGG 0.701343 5_3:+5952905 None:intergenic
GTAATCGGGCGAGTATTACG+AGG 0.710297 5_3:+5952902 None:intergenic
CCTTTGTGCAGTGATAACAG+AGG 0.741745 5_3:-5951467 Msa0794130:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTATATCAATAGA+GGG + chr5_3:5952757-5952776 None:intergenic 10.0%
!! AATAAAAATTATATCAATAG+AGG + chr5_3:5952758-5952777 None:intergenic 10.0%
!!! GATTTTTAATTTAAAAACTA+AGG + chr5_3:5952844-5952863 None:intergenic 10.0%
!!! ACTTCATTGAATTTAATTTT+AGG - chr5_3:5949507-5949526 Msa0794130:three_prime_UTR 15.0%
!!! CTTCATTGAATTTAATTTTA+GGG - chr5_3:5949508-5949527 Msa0794130:three_prime_UTR 15.0%
!!! TAATAATAGCTTAGATTTTT+CGG - chr5_3:5949636-5949655 Msa0794130:three_prime_UTR 15.0%
!! AATCATAATCATAATTGAAA+TGG + chr5_3:5949738-5949757 None:intergenic 15.0%
!!! CTTTAAATTTTAAGTGAAAA+TGG + chr5_3:5950537-5950556 None:intergenic 15.0%
!!! CATTTTCACTTAAAATTTAA+AGG - chr5_3:5950535-5950554 Msa0794130:intron 15.0%
!!! ATATGTTTTTTTCAAACAAA+TGG - chr5_3:5950583-5950602 Msa0794130:intron 15.0%
!! AACTATAAACTTAATTACAA+AGG + chr5_3:5951166-5951185 None:intergenic 15.0%
!! AAAATCTATTAAGAAAAACT+AGG - chr5_3:5952858-5952877 Msa0794130:five_prime_UTR 15.0%
!! TAGAATAATAAACGAAGAAA+TGG + chr5_3:5949565-5949584 None:intergenic 20.0%
!! TGAATTCGAAAAACAAAAAA+AGG + chr5_3:5949702-5949721 None:intergenic 20.0%
!! AGAAGATATATTATCATTGA+TGG + chr5_3:5951433-5951452 None:intergenic 20.0%
!! AAAAAAAAAAAAGACTCGTA+TGG - chr5_3:5951468-5951487 Msa0794130:intron 20.0%
!! AATATTGAATATAAAGCCAA+GGG + chr5_3:5952152-5952171 None:intergenic 20.0%
!! AAATATTGAATATAAAGCCA+AGG + chr5_3:5952153-5952172 None:intergenic 20.0%
!!! ATTCAATATTTTTGTGTAGT+TGG - chr5_3:5952162-5952181 Msa0794130:intron 20.0%
!!! AAAATATACAGTATGGATTA+TGG - chr5_3:5952632-5952651 Msa0794130:intron 20.0%
!! ATTTGTGTAAAAGAAAATTG+AGG + chr5_3:5952963-5952982 None:intergenic 20.0%
! AGATTACAATCAATTTACGT+CGG - chr5_3:5949596-5949615 Msa0794130:three_prime_UTR 25.0%
!!! ATTTGAATTGATTTTGCAGT+TGG - chr5_3:5949772-5949791 Msa0794130:exon 25.0%
!! ATGTATAGTTATTGACTGTT+TGG - chr5_3:5950001-5950020 Msa0794130:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG + chr5_3:5950133-5950152 None:intergenic 25.0%
!! CAAGAATCTCTATTTACTTT+TGG - chr5_3:5950264-5950283 Msa0794130:intron 25.0%
! AGATAAGCTAGAACTATATA+AGG + chr5_3:5950322-5950341 None:intergenic 25.0%
!!! TTTTTCAAACAAATGGTGAA+TGG - chr5_3:5950590-5950609 Msa0794130:intron 25.0%
! AAAAATATCATGAAAGAGAG+AGG + chr5_3:5950626-5950645 None:intergenic 25.0%
!! ATCTTATAGGTTGCTTATTT+TGG - chr5_3:5950720-5950739 Msa0794130:intron 25.0%
! ATTTGCAATAAAACTGAAGT+AGG + chr5_3:5950887-5950906 None:intergenic 25.0%
!!! TTAAGTTTATAGTTTGCTGA+TGG - chr5_3:5951172-5951191 Msa0794130:intron 25.0%
! TAAACTTGTGTCAATTCTTA+TGG - chr5_3:5951235-5951254 Msa0794130:intron 25.0%
!! GAGTATTGCTGTTAATATAA+TGG + chr5_3:5951498-5951517 None:intergenic 25.0%
!! GAATTAACTTTTCAAAGGAT+AGG - chr5_3:5951645-5951664 Msa0794130:intron 25.0%
! TAAGACATAATAACAAGAGA+GGG + chr5_3:5951830-5951849 None:intergenic 25.0%
! TTAAGACATAATAACAAGAG+AGG + chr5_3:5951831-5951850 None:intergenic 25.0%
! GTTATTATGTCTTAAGTACT+CGG - chr5_3:5951836-5951855 Msa0794130:intron 25.0%
!!! TTATTTTAGCAAAACGTTGA+AGG - chr5_3:5951861-5951880 Msa0794130:intron 25.0%
! TGCTAAATGAAGATGAATAT+GGG - chr5_3:5952066-5952085 Msa0794130:intron 25.0%
! ACGTACAGATATATTATCAA+TGG + chr5_3:5952388-5952407 None:intergenic 25.0%
!! ATGTTATTTGACAGTTTGAA+AGG - chr5_3:5952531-5952550 Msa0794130:intron 25.0%
! GACAGTAAAAATATACAGTA+TGG - chr5_3:5952625-5952644 Msa0794130:intron 25.0%
GAGATGAATAGAAACGAAAA+GGG + chr5_3:5949480-5949499 None:intergenic 30.0%
TGAGATGAATAGAAACGAAA+AGG + chr5_3:5949481-5949500 None:intergenic 30.0%
GGATTTCTAATTATAAGCCA+CGG + chr5_3:5949948-5949967 None:intergenic 30.0%
! CCACAAAATGAATTTGAAGT+CGG - chr5_3:5949966-5949985 Msa0794130:intron 30.0%
! CACAAAATGAATTTGAAGTC+GGG - chr5_3:5949967-5949986 Msa0794130:intron 30.0%
TTGTATATAAATGCCCTGTT+TGG + chr5_3:5950239-5950258 None:intergenic 30.0%
! AAACAGGGCATTTATATACA+AGG - chr5_3:5950238-5950257 Msa0794130:intron 30.0%
! ACAAGTATTTTCACACTAGA+TGG - chr5_3:5950359-5950378 Msa0794130:intron 30.0%
! CAAGTATTTTCACACTAGAT+GGG - chr5_3:5950360-5950379 Msa0794130:intron 30.0%
! AAGTATTTTCACACTAGATG+GGG - chr5_3:5950361-5950380 Msa0794130:intron 30.0%
TGAAATCAGAAGATACAAGT+GGG + chr5_3:5950514-5950533 None:intergenic 30.0%
! CTATCCAAAAAGTATGAGAA+AGG - chr5_3:5950945-5950964 Msa0794130:intron 30.0%
! TCTTCCTTTCTCATACTTTT+TGG + chr5_3:5950952-5950971 None:intergenic 30.0%
! AGGCTCTCTTTTTATAAGTT+AGG + chr5_3:5951146-5951165 None:intergenic 30.0%
AGAGAGCTTTCAAAAAAGTT+GGG - chr5_3:5951207-5951226 Msa0794130:intron 30.0%
! CTCTAAGAATACAATCCAAT+GGG + chr5_3:5951296-5951315 None:intergenic 30.0%
! TCTCTAAGAATACAATCCAA+TGG + chr5_3:5951297-5951316 None:intergenic 30.0%
ATTGTATTCTTAGAGAGTAG+TGG - chr5_3:5951301-5951320 Msa0794130:intron 30.0%
ATGGTACTAAACTCACATAT+GGG + chr5_3:5951398-5951417 None:intergenic 30.0%
AATGGTACTAAACTCACATA+TGG + chr5_3:5951399-5951418 None:intergenic 30.0%
TTGATGGAGATAAGTACAAA+TGG + chr5_3:5951417-5951436 None:intergenic 30.0%
CATTAAACAAATGTTGCACT+AGG + chr5_3:5951614-5951633 None:intergenic 30.0%
! GAGCTGAATTAACTTTTCAA+AGG - chr5_3:5951640-5951659 Msa0794130:intron 30.0%
! ACTACTAACTTTTCCATCTT+TGG - chr5_3:5951803-5951822 Msa0794130:intron 30.0%
ACATACTATGAGCTTCTAAA+TGG + chr5_3:5952015-5952034 None:intergenic 30.0%
TAGAAGCTCATAGTATGTTA+TGG - chr5_3:5952017-5952036 Msa0794130:intron 30.0%
CTGCTAAATGAAGATGAATA+TGG - chr5_3:5952065-5952084 Msa0794130:intron 30.0%
ATAATAATAAGGTGGTCTTC+TGG + chr5_3:5952102-5952121 None:intergenic 30.0%
CACCTTATTATTATGACGAA+GGG - chr5_3:5952108-5952127 Msa0794130:intron 30.0%
! TTTGTGTAGTTGGTATATAC+TGG - chr5_3:5952172-5952191 Msa0794130:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr5_3:5952192-5952211 Msa0794130:intron 30.0%
! GTTGTTGTTGTTGTTGTAAT+TGG - chr5_3:5952268-5952287 Msa0794130:intron 30.0%
TATCAATGGCAGAATTTAGT+TGG + chr5_3:5952374-5952393 None:intergenic 30.0%
ATTCAGGATCACTTTCTAAA+GGG + chr5_3:5952443-5952462 None:intergenic 30.0%
AATTCAGGATCACTTTCTAA+AGG + chr5_3:5952444-5952463 None:intergenic 30.0%
TCAACGATACATCGAAAATT+GGG - chr5_3:5952505-5952524 Msa0794130:intron 30.0%
! GTTTGAAAGGTAAAAAGTGT+TGG - chr5_3:5952544-5952563 Msa0794130:intron 30.0%
AAAGCTGTCAAAATCTTTAG+TGG - chr5_3:5952585-5952604 Msa0794130:intron 30.0%
TACTGTCCATGGAAATAAAA+TGG + chr5_3:5952612-5952631 None:intergenic 30.0%
!! CTGTATATTTTTACTGTCCA+TGG + chr5_3:5952623-5952642 None:intergenic 30.0%
AATTATATCAATAGAGGGTC+TGG + chr5_3:5952752-5952771 None:intergenic 30.0%
TAAATCAATGTCACGCGATT+AGG - chr5_3:5949297-5949316 Msa0794130:three_prime_UTR 35.0%
TGTTTGTGTTTGTGGTAATC+GGG + chr5_3:5949360-5949379 None:intergenic 35.0%
GTGTTTGTGTTTGTGGTAAT+CGG + chr5_3:5949361-5949380 None:intergenic 35.0%
TGACCTGAAGAAATCGATAA+TGG + chr5_3:5949448-5949467 None:intergenic 35.0%
AGAAACGAAAAGGGAAAAAG+AGG + chr5_3:5949471-5949490 None:intergenic 35.0%
TGCGAATCTAAGCAATTCAT+GGG + chr5_3:5949667-5949686 None:intergenic 35.0%
TTGCGAATCTAAGCAATTCA+TGG + chr5_3:5949668-5949687 None:intergenic 35.0%
!! TGAATTGATTTTGCAGTTGG+TGG - chr5_3:5949775-5949794 Msa0794130:exon 35.0%
AAGCGTAATTCATCTGTGTT+TGG - chr5_3:5949832-5949851 Msa0794130:CDS 35.0%
! CCGACTTCAAATTCATTTTG+TGG + chr5_3:5949969-5949988 None:intergenic 35.0%
TTGAGCTTATCTATTGCCAT+AGG - chr5_3:5950034-5950053 Msa0794130:intron 35.0%
AAACAGTCACACAAAACCTA+TGG + chr5_3:5950053-5950072 None:intergenic 35.0%
TAGGAAAACAGCTTATGACA+TGG - chr5_3:5950082-5950101 Msa0794130:intron 35.0%
TTCAAACATAGCAACTAGCA+TGG + chr5_3:5950424-5950443 None:intergenic 35.0%
GACCAGATGTGAAGAAATAA+TGG - chr5_3:5950458-5950477 Msa0794130:intron 35.0%
! CACCATTATTTCTTCACATC+TGG + chr5_3:5950463-5950482 None:intergenic 35.0%
GTGAAATCAGAAGATACAAG+TGG + chr5_3:5950515-5950534 None:intergenic 35.0%
TCAAACAAATGGTGAATGGT+TGG - chr5_3:5950594-5950613 Msa0794130:intron 35.0%
! CTTTTGAATGCTTCGATCAT+TGG - chr5_3:5950669-5950688 Msa0794130:intron 35.0%
TGCACCTTTCTTGATCTTAT+AGG - chr5_3:5950707-5950726 Msa0794130:intron 35.0%
GCAACCTATAAGATCAAGAA+AGG + chr5_3:5950714-5950733 None:intergenic 35.0%
CCATGTGATAAATGACTACT+CGG - chr5_3:5950980-5950999 Msa0794130:intron 35.0%
TCATTAACTACAGCCCAATT+TGG - chr5_3:5951071-5951090 Msa0794130:intron 35.0%
CCTAGAAACTAGTCCAAATT+GGG + chr5_3:5951087-5951106 None:intergenic 35.0%
ACCTAGAAACTAGTCCAAAT+TGG + chr5_3:5951088-5951107 None:intergenic 35.0%
GAGAGAGCTTTCAAAAAAGT+TGG - chr5_3:5951206-5951225 Msa0794130:intron 35.0%
! CTCCATGTCTGTTTTATGAA+TGG - chr5_3:5951262-5951281 Msa0794130:intron 35.0%
TGCCATTCATAAAACAGACA+TGG + chr5_3:5951267-5951286 None:intergenic 35.0%
GAAGTATAAGCGGTAATAAC+AGG + chr5_3:5951368-5951387 None:intergenic 35.0%
TGGTACTAAACTCACATATG+GGG + chr5_3:5951397-5951416 None:intergenic 35.0%
TGAAGTGATGAAGAGTTAGT+AGG + chr5_3:5951582-5951601 None:intergenic 35.0%
CAATATGCTGCATTGCAAAT+GGG - chr5_3:5951724-5951743 Msa0794130:intron 35.0%
AAGATGAATATGGGTTTCGT+AGG - chr5_3:5952075-5952094 Msa0794130:intron 35.0%
AGATGAATATGGGTTTCGTA+GGG - chr5_3:5952076-5952095 Msa0794130:intron 35.0%
CCTTCGTCATAATAATAAGG+TGG + chr5_3:5952110-5952129 None:intergenic 35.0%
CCACCTTATTATTATGACGA+AGG - chr5_3:5952107-5952126 Msa0794130:intron 35.0%
AGCCCTTCGTCATAATAATA+AGG + chr5_3:5952113-5952132 None:intergenic 35.0%
GAGACCTTGAATGATAAGAT+AGG - chr5_3:5952348-5952367 Msa0794130:CDS 35.0%
TTGGCCTATCTTATCATTCA+AGG + chr5_3:5952355-5952374 None:intergenic 35.0%
AATATATCTGTACGTCTGAG+AGG - chr5_3:5952393-5952412 Msa0794130:CDS 35.0%
! TTCAGGATCACTTTCTAAAG+GGG + chr5_3:5952442-5952461 None:intergenic 35.0%
GAAAGTGATCCTGAATTTGA+AGG - chr5_3:5952447-5952466 Msa0794130:CDS 35.0%
CTTCAAATGCCTTCAAATTC+AGG + chr5_3:5952459-5952478 None:intergenic 35.0%
GTCAACGATACATCGAAAAT+TGG - chr5_3:5952504-5952523 Msa0794130:intron 35.0%
!! AGTGGACCATTTTATTTCCA+TGG - chr5_3:5952603-5952622 Msa0794130:intron 35.0%
AATAAGAAACAGACTACTGC+TGG + chr5_3:5952676-5952695 None:intergenic 35.0%
AGAAGCTGTGTTTGTGTTTG+TGG + chr5_3:5949368-5949387 None:intergenic 40.0%
TTTCTTCATTCTCTCTCCCA+TGG - chr5_3:5949408-5949427 Msa0794130:three_prime_UTR 40.0%
! CGCTTTGTTGAAAAAAGCTC+AGG + chr5_3:5949817-5949836 None:intergenic 40.0%
AATCAAACCTTGTGACCAGA+AGG - chr5_3:5949881-5949900 Msa0794130:CDS 40.0%
! CAGAAGGAACCTTATTTCAC+CGG - chr5_3:5949897-5949916 Msa0794130:CDS 40.0%
GTGACTGTTTGAGAGAACTT+AGG - chr5_3:5950063-5950082 Msa0794130:intron 40.0%
TGCACAAAGGAGACAGTTAA+TGG + chr5_3:5950768-5950787 None:intergenic 40.0%
AAGTAGGAAGAAATCACCTG+AGG + chr5_3:5950871-5950890 None:intergenic 40.0%
CCGAGTAGTCATTTATCACA+TGG + chr5_3:5950983-5951002 None:intergenic 40.0%
!! CCCAATTTGGACTAGTTTCT+AGG - chr5_3:5951084-5951103 Msa0794130:intron 40.0%
!! AGTTTGCTGATGGAAGAGTT+AGG - chr5_3:5951182-5951201 Msa0794130:intron 40.0%
TGAATGGCATGTAAACCCAT+TGG - chr5_3:5951278-5951297 Msa0794130:intron 40.0%
GGGGATGAATGAAGTATAAG+CGG + chr5_3:5951378-5951397 None:intergenic 40.0%
GCAATATGCTGCATTGCAAA+TGG - chr5_3:5951723-5951742 Msa0794130:intron 40.0%
ACTCTTTGCTGAGACAAACT+AGG + chr5_3:5951915-5951934 None:intergenic 40.0%
TTATTATGACGAAGGGCTAG+AGG - chr5_3:5952115-5952134 Msa0794130:intron 40.0%
!! TATGCTGTTTCTGAATGCAG+AGG - chr5_3:5952319-5952338 Msa0794130:intron 40.0%
!! AAGGTAAAAAGTGTTGGTGC+TGG - chr5_3:5952550-5952569 Msa0794130:intron 40.0%
! GACTGTCAACGTTTGTGTTT+TGG - chr5_3:5952700-5952719 Msa0794130:intron 40.0%
! AAGCTGCGAATGTTTGTTAC+AGG - chr5_3:5952885-5952904 Msa0794130:five_prime_UTR 40.0%
!! GCGCCATTATCGATTTCTTC+AGG - chr5_3:5949442-5949461 Msa0794130:three_prime_UTR 45.0%
CTTTGAACAGCAGCAAGCTT+AGG + chr5_3:5949859-5949878 None:intergenic 45.0%
!! CTAAGCTTGCTGCTGTTCAA+AGG - chr5_3:5949857-5949876 Msa0794130:CDS 45.0%
TAAGGTTCCTTCTGGTCACA+AGG + chr5_3:5949891-5949910 None:intergenic 45.0%
CGGTGAAATAAGGTTCCTTC+TGG + chr5_3:5949899-5949918 None:intergenic 45.0%
AGTGAGTTGTCTGTCCAAAC+AGG - chr5_3:5950222-5950241 Msa0794130:intron 45.0%
GTGAGTTGTCTGTCCAAACA+GGG - chr5_3:5950223-5950242 Msa0794130:intron 45.0%
GATACAAGTGGGACATACAG+AGG + chr5_3:5950503-5950522 None:intergenic 45.0%
CCTCTGTTATCACTGCACAA+AGG + chr5_3:5950781-5950800 None:intergenic 45.0%
CCTTTGTGCAGTGATAACAG+AGG - chr5_3:5950778-5950797 Msa0794130:intron 45.0%
TTGTGCAGTGATAACAGAGG+TGG - chr5_3:5950781-5950800 Msa0794130:intron 45.0%
TGTGCAGTGATAACAGAGGT+GGG - chr5_3:5950782-5950801 Msa0794130:intron 45.0%
TGATAACAGAGGTGGGGATT+TGG - chr5_3:5950789-5950808 Msa0794130:intron 45.0%
!! TTTGGTTGCTGGCTTTCTTC+TGG - chr5_3:5950807-5950826 Msa0794130:intron 45.0%
!! TTGGTTGCTGGCTTTCTTCT+GGG - chr5_3:5950808-5950827 Msa0794130:intron 45.0%
!!! CTTCTGGGTGGTGCTATTTT+CGG - chr5_3:5950823-5950842 Msa0794130:intron 45.0%
!!! TGGTGCTATTTTCGGAACTC+TGG - chr5_3:5950831-5950850 Msa0794130:intron 45.0%
!! GGCTTATGTTTTTGCTCCTC+AGG - chr5_3:5950852-5950871 Msa0794130:intron 45.0%
!!! TGCTGGTTGGGTGCATTTTT+TGG - chr5_3:5951337-5951356 Msa0794130:intron 45.0%
!!! GCTGGTTGGGTGCATTTTTT+GGG - chr5_3:5951338-5951357 Msa0794130:intron 45.0%
AACAAGAGAGGGTCCAAAGA+TGG + chr5_3:5951819-5951838 None:intergenic 45.0%
ACGAAGGGCTAGAGGTAATT+TGG - chr5_3:5952123-5952142 Msa0794130:intron 45.0%
! AGAGGTAATTTGGCTTCCCT+TGG - chr5_3:5952133-5952152 Msa0794130:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_3:5952241-5952260 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_3:5952242-5952261 None:intergenic 45.0%
TTTCTGAATGCAGAGGACCA+GGG - chr5_3:5952326-5952345 Msa0794130:intron 45.0%
CTTATCATTCAAGGTCTCCC+TGG + chr5_3:5952346-5952365 None:intergenic 45.0%
!! GTGTTGGTGCTGGATTGATA+TGG - chr5_3:5952560-5952579 Msa0794130:intron 45.0%
GTAATCGGGCGAGTATTACG+AGG + chr5_3:5949346-5949365 None:intergenic 50.0%
CTGCACGAACCGGTGAAATA+AGG + chr5_3:5949909-5949928 None:intergenic 50.0%
TACCGTTGTTCTGCACGAAC+CGG + chr5_3:5949919-5949938 None:intergenic 50.0%
GAACAACGGTATGTCATCCG+TGG - chr5_3:5949928-5949947 Msa0794130:intron 50.0%
GTGCAGTGATAACAGAGGTG+GGG - chr5_3:5950783-5950802 Msa0794130:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_3:5952237-5952256 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5_3:5952243-5952262 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5_3:5952240-5952259 Msa0794130:intron 50.0%
GTTTCTGAATGCAGAGGACC+AGG - chr5_3:5952325-5952344 Msa0794130:intron 50.0%
! CTTTCTAAAGGGGCAGCAGT+AGG + chr5_3:5952432-5952451 None:intergenic 50.0%
!! CGTTGACAAGAGTATCGAGC+TGG + chr5_3:5952491-5952510 None:intergenic 50.0%
ATCGGGCGAGTATTACGAGG+AGG + chr5_3:5949343-5949362 None:intergenic 55.0%
GGCGCGAATGAAGTTGCCAT+GGG + chr5_3:5949427-5949446 None:intergenic 55.0%
TGGCGCGAATGAAGTTGCCA+TGG + chr5_3:5949428-5949447 None:intergenic 55.0%
!! CACCGGTTCGTGCAGAACAA+CGG - chr5_3:5949914-5949933 Msa0794130:intron 55.0%
! AGAGGTGGGGATTTGGTTGC+TGG - chr5_3:5950796-5950815 Msa0794130:intron 55.0%
!! GTTGCTGGCTTTCTTCTGGG+TGG - chr5_3:5950811-5950830 Msa0794130:intron 55.0%
TTAGAGAGTAGTGGCGCCTC+TGG - chr5_3:5951310-5951329 Msa0794130:intron 55.0%
TAGAGAGTAGTGGCGCCTCT+GGG - chr5_3:5951311-5951330 Msa0794130:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_3:5952229-5952248 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_3:5952228-5952247 Msa0794130:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_3:5952229-5952248 Msa0794130:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_3:5952235-5952254 Msa0794130:intron 55.0%
!! GCCTCTGGGCTGTGCTGGTT+GGG - chr5_3:5951325-5951344 Msa0794130:intron 65.0%
ACCCAACCAGCACAGCCCAG+AGG + chr5_3:5951329-5951348 None:intergenic 65.0%
! CGCCTCTGGGCTGTGCTGGT+TGG - chr5_3:5951324-5951343 Msa0794130:intron 70.0%
GTGGCGCCTCTGGGCTGTGC+TGG - chr5_3:5951320-5951339 Msa0794130:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5949281 5952986 5949281 ID=Msa0794130;Name=Msa0794130
chr5_3 mRNA 5949281 5952986 5949281 ID=Msa0794130-mRNA-1;Parent=Msa0794130;Name=Msa0794130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=146|1|1|1|1|1|5|510|162
chr5_3 exon 5949281 5949928 5949281 ID=Msa0794130-mRNA-1:exon:2381;Parent=Msa0794130-mRNA-1
chr5_3 exon 5950131 5950214 5950131 ID=Msa0794130-mRNA-1:exon:2380;Parent=Msa0794130-mRNA-1
chr5_3 exon 5951394 5951478 5951394 ID=Msa0794130-mRNA-1:exon:2379;Parent=Msa0794130-mRNA-1
chr5_3 exon 5952332 5952476 5952332 ID=Msa0794130-mRNA-1:exon:2378;Parent=Msa0794130-mRNA-1
chr5_3 exon 5952804 5952986 5952804 ID=Msa0794130-mRNA-1:exon:2377;Parent=Msa0794130-mRNA-1
chr5_3 five_prime_UTR 5952841 5952986 5952841 ID=Msa0794130-mRNA-1:five_prime_utr;Parent=Msa0794130-mRNA-1
chr5_3 CDS 5952804 5952840 5952804 ID=Msa0794130-mRNA-1:cds;Parent=Msa0794130-mRNA-1
chr5_3 CDS 5952332 5952476 5952332 ID=Msa0794130-mRNA-1:cds;Parent=Msa0794130-mRNA-1
chr5_3 CDS 5951394 5951478 5951394 ID=Msa0794130-mRNA-1:cds;Parent=Msa0794130-mRNA-1
chr5_3 CDS 5950131 5950214 5950131 ID=Msa0794130-mRNA-1:cds;Parent=Msa0794130-mRNA-1
chr5_3 CDS 5949791 5949928 5949791 ID=Msa0794130-mRNA-1:cds;Parent=Msa0794130-mRNA-1
chr5_3 three_prime_UTR 5949281 5949790 5949281 ID=Msa0794130-mRNA-1:three_prime_utr;Parent=Msa0794130-mRNA-1
Gene Sequence

>Msa0794130

ATGGCAACTTCATTCGCGCCATTATCGATTTCTTCAGTTGGTGGATCTCATGTGAAGTCACCTGAGCTTTTTTCAACAAAGCGTAATTCATCTGTGTTTGGACCTAAGCTTGCTGCTGTTCAAAGGAAATCAAACCTTGTGACCAGAAGGAACCTTATTTCACCGGTTCGTGCAGAACAACGTGATAACAGAGGTGGGGATTTGGTTGCTGGCTTTCTTCTGGGTGGTGCTATTTTCGGAACTCTGGCTTATGTTTTTGCTCCTCAGATCAGAAAATCTCTGCTAAATGAAGATGAATATGGGTTTCGTAGGGCCAGAAGACCACCTTATTATTATGACGAAGGGCTAGAGAGGACCAGGGAGACCTTGAATGATAAGATAGGCCAACTAAATTCTGCCATTGATAATATATCTGTACGTCTGAGAGGTAACAAGAAAGTGCCTACTGCTGCCCCTTTAGAAAGTGATCCTGAATTTGAAGGCATTTGA

Protein sequence

>Msa0794130

MATSFAPLSISSVGGSHVKSPELFSTKRNSSVFGPKLAAVQRKSNLVTRRNLISPVRAEQRDNRGGDLVAGFLLGGAIFGTLAYVFAPQIRKSLLNEDEYGFRRARRPPYYYDEGLERTRETLNDKIGQLNSAIDNISVRLRGNKKVPTAAPLESDPEFEGI*