AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030740 MtrunA17_Chr1g0188291 97.546 326 8 0 1 326 1 326 0.0 655
Msa0030740 MtrunA17_Chr2g0329451 66.772 316 105 0 8 323 14 329 2.50e-160 451
Msa0030740 MtrunA17_Chr4g0033631 66.246 317 107 0 8 324 15 331 2.89e-157 443
Msa0030740 MtrunA17_Chr6g0474331 64.557 316 110 2 8 321 28 343 1.72e-154 436
Msa0030740 MtrunA17_Chr1g0204101 63.175 315 114 2 8 320 23 337 8.74e-149 422
Msa0030740 MtrunA17_Chr5g0434971 65.705 312 106 1 5 315 64 375 1.81e-145 415
Msa0030740 MtrunA17_Chr1g0183241 51.429 315 130 4 8 320 110 403 6.30e-106 315
Msa0030740 MtrunA17_Chr1g0171921 48.048 333 146 6 8 326 183 502 2.00e-97 297
Msa0030740 MtrunA17_Chr1g0177771 48.726 314 141 5 8 317 253 550 2.82e-95 293
Msa0030740 MtrunA17_Chr1g0183661 50.182 275 123 4 34 306 14 276 2.49e-92 277
Msa0030740 MtrunA17_Chr1g0177321 45.886 316 142 5 8 319 179 469 4.37e-88 272
Msa0030740 MtrunA17_Chr7g0246421 58.564 181 73 2 135 313 5 185 4.64e-72 221
Msa0030740 MtrunA17_Chr1g0176221 45.494 233 98 2 88 320 4 207 4.97e-66 206
Msa0030740 MtrunA17_Chr5g0419371 31.609 348 199 5 7 318 209 553 5.49e-53 183
Msa0030740 MtrunA17_Chr4g0008441 34.906 318 174 4 34 318 133 450 2.52e-52 179
Msa0030740 MtrunA17_Chr7g0246411 56.391 133 56 1 5 135 38 170 3.69e-47 157
Msa0030740 MtrunA17_Chr4g0020911 52.273 132 61 1 134 263 58 189 3.69e-43 147
Msa0030740 MtrunA17_Chr1g0184491 25.212 353 222 9 3 324 70 411 4.39e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030740 AT4G10260.1 77.918 317 70 0 7 323 5 321 0.0 526
Msa0030740 AT3G59480.1 66.875 320 106 0 2 321 4 323 1.22e-162 457
Msa0030740 AT1G06020.1 67.296 318 104 0 8 325 10 327 8.23e-161 452
Msa0030740 AT1G06030.1 67.188 320 105 0 2 321 5 324 6.88e-160 450
Msa0030740 AT2G31390.1 66.879 314 104 0 8 321 9 322 1.45e-159 449
Msa0030740 AT1G66430.1 63.323 319 116 1 2 319 59 377 3.26e-151 430
Msa0030740 AT5G51830.2 63.551 321 115 2 8 326 23 343 1.28e-150 427
Msa0030740 AT5G51830.1 63.551 321 115 2 8 326 23 343 1.28e-150 427
Msa0030740 AT3G54090.1 33.795 361 191 6 7 320 102 461 3.34e-56 189
Msa0030740 AT1G50390.1 52.663 169 51 1 153 321 1 140 2.01e-53 172
Msa0030740 AT1G69200.1 31.003 329 191 4 7 300 205 532 1.82e-46 166
Msa0030740 AT1G06730.1 24.917 301 205 6 40 327 132 424 2.35e-12 67.8
Msa0030740 AT1G17160.1 23.973 292 192 7 39 321 105 375 8.46e-11 62.8

Find 139 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGTGGTACCTTAAATT+TGG 0.118031 1_1:-57163148 None:intergenic
GTCAAAGTCTCTCTCAATTT+TGG 0.120131 1_1:-57165905 None:intergenic
TGTCTCACAAATATAGTTTA+AGG 0.131310 1_1:-57163514 None:intergenic
ACCTTCTCTAGCAGCTTTCA+TGG 0.275867 1_1:-57164689 None:intergenic
GGCAGCATTGCCACCAAGTT+TGG 0.291331 1_1:-57163751 None:intergenic
TTGTATGAAGGTCTTATTAA+AGG 0.295536 1_1:-57166103 None:intergenic
ATGTTTGAAATATAATTATA+AGG 0.304077 1_1:-57163315 None:intergenic
CAAGTACAACTCATCCCTTT+TGG 0.324093 1_1:-57162818 None:intergenic
TCCAGTGGTACCTTAAATTT+GGG 0.327418 1_1:-57163147 None:intergenic
CTAAGCATTCAATCATATAT+TGG 0.327482 1_1:-57163342 None:intergenic
GAATGAGGCTGATTTCATTA+AGG 0.330561 1_1:+57164798 Msa0030740:CDS
CTTTGATTAATTGAATAAAT+AGG 0.336302 1_1:+57162923 Msa0030740:five_prime_UTR
CAGGTAGGGGATGATGAGTT+TGG 0.340424 1_1:+57164406 Msa0030740:intron
AAGCATACCTCAAATATAGA+AGG 0.345785 1_1:-57165751 None:intergenic
CAGTGTGAAACCCAAATTTA+AGG 0.348960 1_1:+57163137 Msa0030740:five_prime_UTR
TAATAACAAACACAAATATA+TGG 0.356452 1_1:+57163435 Msa0030740:five_prime_UTR
TGAAATTTCTGCTGGTGATT+TGG 0.359064 1_1:+57162787 Msa0030740:five_prime_UTR
CACACTGGTCCCACTTATAT+AGG 0.362155 1_1:-57163121 None:intergenic
AATACAAAGATATTCCATTA+TGG 0.367235 1_1:+57164619 Msa0030740:CDS
CTTACAAAAGCATTCATTCT+CGG 0.367708 1_1:+57163198 Msa0030740:five_prime_UTR
AACAGAGACATGCTATCTTT+TGG 0.368243 1_1:+57162721 Msa0030740:five_prime_UTR
CTTGGTAGCAGTTAAATGTT+TGG 0.374855 1_1:-57162095 None:intergenic
CAAAAGGGATGAGTTGTACT+TGG 0.379437 1_1:+57162819 Msa0030740:five_prime_UTR
TCTGCTGAGGCTGCTAGGTC+TGG 0.380493 1_1:+57164760 Msa0030740:CDS
AAACAAATTAAAGAATGTTC+TGG 0.384541 1_1:-57161875 None:intergenic
TGGTTCTGAAATAAGACTAA+TGG 0.387445 1_1:-57164644 None:intergenic
ACAACTCTTCTCTTTGTTGA+AGG 0.393734 1_1:-57162133 None:intergenic
TGTCCTATGATCCAAATGTT+AGG 0.394379 1_1:+57164722 Msa0030740:CDS
TAAGACTAATGGATCCATAA+TGG 0.395043 1_1:-57164633 None:intergenic
ATTTCAAAGGAAAGTTTAGT+TGG 0.395477 1_1:-57166029 None:intergenic
AAGCCTAACATTTGGATCAT+AGG 0.402363 1_1:-57164725 None:intergenic
AAGAGACCCTTCTATATTTG+AGG 0.407481 1_1:+57165744 Msa0030740:CDS
TCGCCGAATGATATCACTAA+TGG 0.409144 1_1:-57163621 None:intergenic
GGTCTGGAATCAAAAGCATT+TGG 0.412730 1_1:+57164776 Msa0030740:CDS
AACAAATTAAAGAATGTTCT+GGG 0.419863 1_1:-57161874 None:intergenic
AATGAATAACTTGGTAGGCT+TGG 0.422803 1_1:-57162012 None:intergenic
ACCATGCAGATCTGCTCATA+TGG 0.424309 1_1:+57164663 Msa0030740:CDS
GCTTGTGCTGTGTCCAAACT+TGG 0.436119 1_1:+57163738 Msa0030740:CDS
CAAATGTTAGGCTTCCTTTG+TGG 0.438325 1_1:+57164734 Msa0030740:CDS
ATAACAGCTTCTTCATTCTC+AGG 0.444898 1_1:-57165099 None:intergenic
AGTTTAGTTGGCTTTAGAGC+TGG 0.453062 1_1:-57166017 None:intergenic
TTTGTGACATTGAGGAAAGA+TGG 0.456630 1_1:+57164514 Msa0030740:CDS
GTGAAGGCAATTGACACAAC+TGG 0.456721 1_1:+57165679 Msa0030740:CDS
AGACACATCTGGTGTATCCT+TGG 0.457720 1_1:+57163665 Msa0030740:CDS
TTCTGAGCCTCTTCAGCAGT+TGG 0.458744 1_1:-57165986 None:intergenic
AGTTGAGTGAGCTTGGACTC+AGG 0.458878 1_1:-57162205 None:intergenic
GTCTTCCATCATCATACATT+AGG 0.461598 1_1:-57162901 None:intergenic
AACACCAAGTTGAGTGAGCT+TGG 0.464998 1_1:-57162212 None:intergenic
CACTCCTAGTGGGGCTAATG+AGG 0.472036 1_1:+57162760 Msa0030740:five_prime_UTR
TCCTTTGTGGCCTTCTGCTG+AGG 0.474259 1_1:+57164747 Msa0030740:CDS
CACAAAGGAAGCCTAACATT+TGG 0.475391 1_1:-57164733 None:intergenic
AAGAAGAAGAACAAGATGTC+AGG 0.478396 1_1:+57163588 Msa0030740:exon
ACTGTTCTAAAAGAAATTAG+TGG 0.478563 1_1:+57163228 Msa0030740:five_prime_UTR
ACAGCACAAGCCACATTGGC+AGG 0.479985 1_1:-57163726 None:intergenic
TATGTCCATGGAAAATTACT+TGG 0.480875 1_1:-57162692 None:intergenic
TATAATTATAAGGTATGTAA+TGG 0.481825 1_1:-57163305 None:intergenic
ATTGAGGAAAGATGGAGAGA+GGG 0.488808 1_1:+57164522 Msa0030740:CDS
GGCCTTCTGCTGAGGCTGCT+AGG 0.493211 1_1:+57164755 Msa0030740:CDS
TGCACTTCCAACTGCTGAAG+AGG 0.495831 1_1:+57165979 Msa0030740:CDS
AAATAGGTTTCCTATATAAG+TGG 0.497597 1_1:+57163111 Msa0030740:five_prime_UTR
GATCCATTAGTGATATCATT+CGG 0.499392 1_1:+57163618 Msa0030740:CDS
TTATGTCTATGTGGCATGAC+AGG 0.499573 1_1:+57165118 Msa0030740:CDS
TCTTCAGCAGTTGGAAGTGC+AGG 0.503583 1_1:-57165977 None:intergenic
CTTAAATTTGGGTTTCACAC+TGG 0.505733 1_1:-57163136 None:intergenic
ACCCAAATTTAAGGTACCAC+TGG 0.505898 1_1:+57163146 Msa0030740:five_prime_UTR
GACCTAGCAGCCTCAGCAGA+AGG 0.506010 1_1:-57164757 None:intergenic
AAGGATACACCAGATGTGTC+TGG 0.508328 1_1:-57163663 None:intergenic
AATGAATATAACTAGTCCTC+TGG 0.511039 1_1:-57166063 None:intergenic
AAGCTGCTTATTATCACTGA+TGG 0.515902 1_1:+57165144 Msa0030740:CDS
AATTTGTCTAGACTCTAGAA+AGG 0.516976 1_1:+57161907 Msa0030740:five_prime_UTR
ACTAAGAACCTTGCCGATGA+AGG 0.518890 1_1:-57163772 None:intergenic
TGTGCTGTGTCCAAACTTGG+TGG 0.518945 1_1:+57163741 Msa0030740:CDS
ACATTGGCAGGAGCACCACC+AGG 0.521023 1_1:-57163714 None:intergenic
CTAGGGGAGTGCATTTAAGA+TGG 0.521265 1_1:-57163001 None:intergenic
TGTACTTGGGATGTGTCTGT+TGG 0.525073 1_1:+57162833 Msa0030740:five_prime_UTR
GAGTCCAAGCTCACTCAACT+TGG 0.526860 1_1:+57162208 Msa0030740:five_prime_UTR
AGCAGTTGGAAGTGCAGGAA+TGG 0.528605 1_1:-57165972 None:intergenic
TTGACATTTGCAAATGCTTG+TGG 0.529294 1_1:+57165923 Msa0030740:CDS
CAAACATTTAACTGCTACCA+AGG 0.534703 1_1:+57162096 Msa0030740:five_prime_UTR
AATCAAAAGCATTTGGAATG+AGG 0.534914 1_1:+57164783 Msa0030740:CDS
CATTGAGGAAAGATGGAGAG+AGG 0.536347 1_1:+57164521 Msa0030740:CDS
GAGTCTAGACAAATTAATCA+AGG 0.539027 1_1:-57161899 None:intergenic
AGTTAAATGTTTGGTTTGTG+AGG 0.540865 1_1:-57162086 None:intergenic
TATTATCACTGATGGAGAGA+AGG 0.541140 1_1:+57165152 Msa0030740:CDS
TTGGGATGTGTCTGTTGGTG+TGG 0.542437 1_1:+57162838 Msa0030740:five_prime_UTR
GGTGGCAATGCTGCCTTCAT+CGG 0.543040 1_1:+57163759 Msa0030740:CDS
TATGCTTTCATCAAAGCCCC+TGG 0.543420 1_1:+57163696 Msa0030740:CDS
CATTGGCATTTGTGACATTG+AGG 0.546347 1_1:+57164506 Msa0030740:CDS
TTCAGTAACATATCAGCACT+AGG 0.548072 1_1:-57164565 None:intergenic
GCAATTGACACAACTGGTGC+TGG 0.548770 1_1:+57165685 Msa0030740:CDS
GGACTATCATCAAATTTCAA+AGG 0.552570 1_1:-57166042 None:intergenic
TTCTATTGCACAATTTACAA+TGG 0.554365 1_1:+57162033 Msa0030740:five_prime_UTR
ATTATCACTGATGGAGAGAA+GGG 0.554637 1_1:+57165153 Msa0030740:CDS
GCAGCTGTCACAGAGAAACT+TGG 0.559175 1_1:+57162160 Msa0030740:five_prime_UTR
CACAGAGGCAAGAACTGCAT+TGG 0.559630 1_1:+57164489 Msa0030740:CDS
TAGGGGATGATGAGTTTGGA+AGG 0.562525 1_1:+57164410 Msa0030740:CDS
GTCCATGGAAAATTACTTGG+AGG 0.564369 1_1:-57162689 None:intergenic
AAGTGAAGGTCACTCCTAGT+GGG 0.564562 1_1:+57162750 Msa0030740:five_prime_UTR
AATAGAATGAATAACTTGGT+AGG 0.564655 1_1:-57162017 None:intergenic
ACATGCCTAATGTATGATGA+TGG 0.565604 1_1:+57162896 Msa0030740:five_prime_UTR
GTGCAATAGAATGAATAACT+TGG 0.567374 1_1:-57162021 None:intergenic
AGGCAAAGTTACACTTACCT+TGG 0.568840 1_1:-57162113 None:intergenic
TGGTGGTGCTCCTGCCAATG+TGG 0.569228 1_1:+57163716 Msa0030740:CDS
GCCTCAGCAGAAGGCCACAA+AGG 0.575264 1_1:-57164748 None:intergenic
AATAGGTTTCCTATATAAGT+GGG 0.575361 1_1:+57163112 Msa0030740:five_prime_UTR
AGCAATGTGCACAACACAGA+AGG 0.580922 1_1:+57165946 Msa0030740:CDS
CAAATTAAAGAATGTTCTGG+GGG 0.585181 1_1:-57161872 None:intergenic
AAAGTGAAGGTCACTCCTAG+TGG 0.587646 1_1:+57162749 Msa0030740:five_prime_UTR
TCAGTAACATATCAGCACTA+GGG 0.589086 1_1:-57164564 None:intergenic
GAGGCAGTTGAAATTTCTGC+TGG 0.589901 1_1:+57162779 Msa0030740:five_prime_UTR
AGCATACCTCAAATATAGAA+GGG 0.591278 1_1:-57165750 None:intergenic
GGACACAGCACAAGCCACAT+TGG 0.596726 1_1:-57163730 None:intergenic
AATTAAAGAATGTTCTGGGG+GGG 0.597942 1_1:-57161870 None:intergenic
GCCATGAAAGCTGCTAGAGA+AGG 0.601701 1_1:+57164688 Msa0030740:CDS
CAATGCTGCCTTCATCGGCA+AGG 0.604108 1_1:+57163764 Msa0030740:CDS
TGAGTGAGCTTGGACTCAGG+AGG 0.606187 1_1:-57162202 None:intergenic
AAAAGGGATGAGTTGTACTT+GGG 0.609307 1_1:+57162820 Msa0030740:five_prime_UTR
ATGGCATCATCATCATGTGT+AGG 0.613363 1_1:+57162052 Msa0030740:five_prime_UTR
GGGTTGTAGATATGTCACTA+AGG 0.615724 1_1:+57165173 Msa0030740:CDS
GCCATATGAGCAGATCTGCA+TGG 0.617266 1_1:-57164664 None:intergenic
GAAATTTGATGATAGTCCAG+AGG 0.621030 1_1:+57166047 Msa0030740:three_prime_UTR
TCTGTTGCATCATATGTCCA+TGG 0.622988 1_1:-57162704 None:intergenic
GCAATGTGCACAACACAGAA+GGG 0.625842 1_1:+57165947 Msa0030740:CDS
AAAACAATAATAACTGACAA+AGG 0.628440 1_1:+57163559 Msa0030740:five_prime_UTR
ACAAATTAAAGAATGTTCTG+GGG 0.630823 1_1:-57161873 None:intergenic
GAGTGAGCTTGGACTCAGGA+GGG 0.632998 1_1:-57162201 None:intergenic
GCTTTCATCAAAGCCCCTGG+TGG 0.633925 1_1:+57163699 Msa0030740:CDS
GAAAGAATCTGAATTGAACA+TGG 0.634038 1_1:+57164585 Msa0030740:CDS
ATTGGCAGGAGCACCACCAG+GGG 0.646719 1_1:-57163712 None:intergenic
AGCATATAAATATTCAACGA+TGG 0.651237 1_1:-57163465 None:intergenic
GGTAAGTGGATTCTCAGTGA+AGG 0.658481 1_1:+57165663 Msa0030740:CDS
ACTGCCTCATTAGCCCCACT+AGG 0.662701 1_1:-57162764 None:intergenic
ATGAAAGCTGCTAGAGAAGG+TGG 0.665141 1_1:+57164691 Msa0030740:CDS
AAGAAGCTGTTATGTCTATG+TGG 0.672287 1_1:+57165109 Msa0030740:CDS
CTCAACTTGGTGTTAGACAG+TGG 0.675133 1_1:+57162221 Msa0030740:five_prime_UTR
GAAAGCATAAGATTCAGCCA+AGG 0.678603 1_1:-57163682 None:intergenic
CATTGGCAGGAGCACCACCA+GGG 0.679805 1_1:-57163713 None:intergenic
AGTGAAGGTCACTCCTAGTG+GGG 0.682734 1_1:+57162751 Msa0030740:five_prime_UTR
AAATTAAAGAATGTTCTGGG+GGG 0.713266 1_1:-57161871 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTGAAATATAATTATA+AGG - chr1_1:57163318-57163337 None:intergenic 10.0%
!! TTGAATTTGAAAATTATTTA+TGG + chr1_1:57164833-57164852 Msa0030740:intron 10.0%
!!! TACTTTTAAAATCACATATA+TGG - chr1_1:57162443-57162462 None:intergenic 15.0%
!! AATCATAAAAATAAAACGTT+TGG - chr1_1:57162479-57162498 None:intergenic 15.0%
!! CTTTGATTAATTGAATAAAT+AGG + chr1_1:57162923-57162942 Msa0030740:five_prime_UTR 15.0%
!!! TAACTTACAGTTTTTTTTTA+AGG - chr1_1:57163055-57163074 None:intergenic 15.0%
!!! TATTTTAAGACCATAAAAAT+AGG + chr1_1:57163095-57163114 Msa0030740:five_prime_UTR 15.0%
!! TATAATTATAAGGTATGTAA+TGG - chr1_1:57163308-57163327 None:intergenic 15.0%
!! TAATAACAAACACAAATATA+TGG + chr1_1:57163435-57163454 Msa0030740:five_prime_UTR 15.0%
!! ATAAAAATCAACAATGTAAT+AGG - chr1_1:57163494-57163513 None:intergenic 15.0%
!! ATATATACTTAAAATGAATG+CGG + chr1_1:57163845-57163864 Msa0030740:intron 15.0%
!!! TATTTGAAATTGAGTAAATA+AGG - chr1_1:57164217-57164236 None:intergenic 15.0%
!!! AAAGAAATGTTTTCAAAATA+TGG - chr1_1:57165214-57165233 None:intergenic 15.0%
!!! AAAACATTTCTTTTGATTTT+TGG + chr1_1:57165221-57165240 Msa0030740:intron 15.0%
!! TTTGTAAAAATAATTCTCAT+TGG + chr1_1:57165838-57165857 Msa0030740:intron 15.0%
!! AACAAATTAAAGAATGTTCT+GGG - chr1_1:57161877-57161896 None:intergenic 20.0%
!! AAACAAATTAAAGAATGTTC+TGG - chr1_1:57161878-57161897 None:intergenic 20.0%
!!! GTAAAGTTTATCTTTTCTTT+TGG - chr1_1:57161956-57161975 None:intergenic 20.0%
!! AAATGTGGTATTTATTACTT+GGG - chr1_1:57162247-57162266 None:intergenic 20.0%
!! ATGAAAAAACAAGAAATTTG+AGG - chr1_1:57162601-57162620 None:intergenic 20.0%
!!! ATATAGGAAACCTATTTTTA+TGG - chr1_1:57163108-57163127 None:intergenic 20.0%
!! AAAACAATAATAACTGACAA+AGG + chr1_1:57163559-57163578 Msa0030740:five_prime_UTR 20.0%
!! ATAAATTTCAATGACCATAT+TGG - chr1_1:57164043-57164062 None:intergenic 20.0%
!! ATATGGTCATTGAAATTTAT+AGG + chr1_1:57164043-57164062 Msa0030740:intron 20.0%
!!! TACAATTCTAGAAATCATTT+TGG - chr1_1:57164103-57164122 None:intergenic 20.0%
!!! ATCATTGCATTTATTTTGTT+AGG - chr1_1:57164376-57164395 None:intergenic 20.0%
!! AATACAAAGATATTCCATTA+TGG + chr1_1:57164619-57164638 Msa0030740:CDS 20.0%
!! TTGAAATAAAAATGACCATA+GGG - chr1_1:57164972-57164991 None:intergenic 20.0%
!!! TTTGAAATAAAAATGACCAT+AGG - chr1_1:57164973-57164992 None:intergenic 20.0%
!!! AAACTAACCATTTTCTTTAT+AGG + chr1_1:57165038-57165057 Msa0030740:intron 20.0%
!!! TTTTCAAAATATGGATTAGA+TGG - chr1_1:57165205-57165224 None:intergenic 20.0%
!! TGAATAGTTTAGATTACAAT+AGG - chr1_1:57165599-57165618 None:intergenic 20.0%
!!! AAAATACTAATTTTGAGTCT+AGG + chr1_1:57165814-57165833 Msa0030740:intron 20.0%
! ACAAATTAAAGAATGTTCTG+GGG - chr1_1:57161876-57161895 None:intergenic 25.0%
! AATAGAATGAATAACTTGGT+AGG - chr1_1:57162020-57162039 None:intergenic 25.0%
! TTCTATTGCACAATTTACAA+TGG + chr1_1:57162033-57162052 Msa0030740:five_prime_UTR 25.0%
! GAAATGTGGTATTTATTACT+TGG - chr1_1:57162248-57162267 None:intergenic 25.0%
! AACAAGATAATGAAGAAATG+TGG - chr1_1:57162262-57162281 None:intergenic 25.0%
! TTAGAATAATAGACATGATG+AGG - chr1_1:57162293-57162312 None:intergenic 25.0%
! ACGACATTAAAAATCTTTGA+CGG + chr1_1:57162518-57162537 Msa0030740:intron 25.0%
! TGGTGTAAATAAAAACAGAT+GGG + chr1_1:57162661-57162680 Msa0030740:intron 25.0%
! AAATAGGTTTCCTATATAAG+TGG + chr1_1:57163111-57163130 Msa0030740:five_prime_UTR 25.0%
! AATAGGTTTCCTATATAAGT+GGG + chr1_1:57163112-57163131 Msa0030740:five_prime_UTR 25.0%
!!! ACTGTTCTAAAAGAAATTAG+TGG + chr1_1:57163228-57163247 Msa0030740:five_prime_UTR 25.0%
! CTAAGCATTCAATCATATAT+TGG - chr1_1:57163345-57163364 None:intergenic 25.0%
! AGCATATAAATATTCAACGA+TGG - chr1_1:57163468-57163487 None:intergenic 25.0%
! TGTCTCACAAATATAGTTTA+AGG - chr1_1:57163517-57163536 None:intergenic 25.0%
! GATAAACGTGATAGTAAAAT+GGG - chr1_1:57163809-57163828 None:intergenic 25.0%
! TTTACGTATAGTCTATCAAT+GGG - chr1_1:57163942-57163961 None:intergenic 25.0%
! ATTTACGTATAGTCTATCAA+TGG - chr1_1:57163943-57163962 None:intergenic 25.0%
! TTCTGAGTAAATATCCAATA+TGG + chr1_1:57164026-57164045 Msa0030740:intron 25.0%
!!! GATGTTAAGTTGATAATGTA+AGG - chr1_1:57164243-57164262 None:intergenic 25.0%
!! TGATATTTGAAATTGCAAGA+TGG - chr1_1:57164314-57164333 None:intergenic 25.0%
! TTGCAATTTCAAATATCAGA+TGG + chr1_1:57164316-57164335 Msa0030740:intron 25.0%
! TATGGAAGTCTATTAAATGA+TGG + chr1_1:57164851-57164870 Msa0030740:intron 25.0%
! TCACTTACCTATAAAGAAAA+TGG - chr1_1:57165048-57165067 None:intergenic 25.0%
! TTTAGTTAATTGAGCATTAG+TGG + chr1_1:57165265-57165284 Msa0030740:intron 25.0%
! TTAAACTGTTTATTGTAACG+TGG + chr1_1:57165553-57165572 Msa0030740:intron 25.0%
!! GTTTGAATGCAGAATTTTAA+AGG + chr1_1:57165637-57165656 Msa0030740:intron 25.0%
!!! AATGCAGAATTTTAAAGGAA+GGG + chr1_1:57165642-57165661 Msa0030740:intron 25.0%
!! TGACATTTTTCTTTGCTTTA+TGG + chr1_1:57165862-57165881 Msa0030740:intron 25.0%
! ATTTCAAAGGAAAGTTTAGT+TGG - chr1_1:57166032-57166051 None:intergenic 25.0%
! AAATTAAAGAATGTTCTGGG+GGG - chr1_1:57161874-57161893 None:intergenic 30.0%
CAAATTAAAGAATGTTCTGG+GGG - chr1_1:57161875-57161894 None:intergenic 30.0%
GAGTCTAGACAAATTAATCA+AGG - chr1_1:57161902-57161921 None:intergenic 30.0%
! AATTTGTCTAGACTCTAGAA+AGG + chr1_1:57161907-57161926 Msa0030740:five_prime_UTR 30.0%
GTGCAATAGAATGAATAACT+TGG - chr1_1:57162024-57162043 None:intergenic 30.0%
!! AGTTAAATGTTTGGTTTGTG+AGG - chr1_1:57162089-57162108 None:intergenic 30.0%
CTGGTGTAAATAAAAACAGA+TGG + chr1_1:57162660-57162679 Msa0030740:intron 30.0%
GGTGTAAATAAAAACAGATG+GGG + chr1_1:57162662-57162681 Msa0030740:intron 30.0%
TATGTCCATGGAAAATTACT+TGG - chr1_1:57162695-57162714 None:intergenic 30.0%
!! ATTTGGTTGTTTTCCCAAAA+GGG + chr1_1:57162804-57162823 Msa0030740:five_prime_UTR 30.0%
! AGAGCAAAAAGTATAGTCTA+GGG - chr1_1:57163021-57163040 None:intergenic 30.0%
! AAGAGCAAAAAGTATAGTCT+AGG - chr1_1:57163022-57163041 None:intergenic 30.0%
! GAGAATGAATGCTTTTGTAA+GGG - chr1_1:57163199-57163218 None:intergenic 30.0%
!! CTTACAAAAGCATTCATTCT+CGG + chr1_1:57163198-57163217 Msa0030740:five_prime_UTR 30.0%
GATCCATTAGTGATATCATT+CGG + chr1_1:57163618-57163637 Msa0030740:CDS 30.0%
CGATAAACGTGATAGTAAAA+TGG - chr1_1:57163810-57163829 None:intergenic 30.0%
ATACTTAAAATGAATGCGGA+TGG + chr1_1:57163849-57163868 Msa0030740:intron 30.0%
TACTTAAAATGAATGCGGAT+GGG + chr1_1:57163850-57163869 Msa0030740:intron 30.0%
TTACGTATAGTCTATCAATG+GGG - chr1_1:57163941-57163960 None:intergenic 30.0%
CTATACGTAAATATTCACTG+AGG + chr1_1:57163951-57163970 Msa0030740:intron 30.0%
GTAAATATTCACTGAGGTTA+TGG + chr1_1:57163957-57163976 Msa0030740:intron 30.0%
TAGTCTCCGTAAAATATCAA+CGG + chr1_1:57164271-57164290 Msa0030740:intron 30.0%
AAAAATGGAGTGAATACAGA+TGG + chr1_1:57164454-57164473 Msa0030740:CDS 30.0%
GAAAGAATCTGAATTGAACA+TGG + chr1_1:57164585-57164604 Msa0030740:CDS 30.0%
! TAAGACTAATGGATCCATAA+TGG - chr1_1:57164636-57164655 None:intergenic 30.0%
!! TGGTTCTGAAATAAGACTAA+TGG - chr1_1:57164647-57164666 None:intergenic 30.0%
!! AATCAAAAGCATTTGGAATG+AGG + chr1_1:57164783-57164802 Msa0030740:CDS 30.0%
AATCAACTTGTAATTCCCTA+TGG + chr1_1:57164954-57164973 Msa0030740:intron 30.0%
AATAGGATGAAAGCAACTTA+TGG - chr1_1:57165409-57165428 None:intergenic 30.0%
TATGGAGAGTTTACGAAAAT+AGG - chr1_1:57165426-57165445 None:intergenic 30.0%
! ACTGTTTTCATAAGCTACTA+TGG - chr1_1:57165444-57165463 None:intergenic 30.0%
AGGAATTGTAGCTCAAATAT+CGG - chr1_1:57165579-57165598 None:intergenic 30.0%
CTAAACTATTCATCCATCTT+CGG + chr1_1:57165607-57165626 Msa0030740:intron 30.0%
TCAAACAATATTTCCGAAGA+TGG - chr1_1:57165623-57165642 None:intergenic 30.0%
!! GAATGCAGAATTTTAAAGGA+AGG + chr1_1:57165641-57165660 Msa0030740:intron 30.0%
!! AATTTTAAAGGAAGGGTAAG+TGG + chr1_1:57165649-57165668 Msa0030740:CDS 30.0%
AGCATACCTCAAATATAGAA+GGG - chr1_1:57165753-57165772 None:intergenic 30.0%
AAGCATACCTCAAATATAGA+AGG - chr1_1:57165754-57165773 None:intergenic 30.0%
CTTTATGGAATTCAACATGA+AGG + chr1_1:57165877-57165896 Msa0030740:intron 30.0%
GGACTATCATCAAATTTCAA+AGG - chr1_1:57166045-57166064 None:intergenic 30.0%
AATGAATATAACTAGTCCTC+TGG - chr1_1:57166066-57166085 None:intergenic 30.0%
!! AATTAAAGAATGTTCTGGGG+GGG - chr1_1:57161873-57161892 None:intergenic 35.0%
AATGAATAACTTGGTAGGCT+TGG - chr1_1:57162015-57162034 None:intergenic 35.0%
! CTTGGTAGCAGTTAAATGTT+TGG - chr1_1:57162098-57162117 None:intergenic 35.0%
CAAACATTTAACTGCTACCA+AGG + chr1_1:57162096-57162115 Msa0030740:five_prime_UTR 35.0%
ACAACTCTTCTCTTTGTTGA+AGG - chr1_1:57162136-57162155 None:intergenic 35.0%
ACTAAAAGAGCAAGTAGCAT+AGG - chr1_1:57162360-57162379 None:intergenic 35.0%
!!! CGTACATTTTTTAACACCGA+CGG - chr1_1:57162399-57162418 None:intergenic 35.0%
!! GGTTCAGTGTAATTTGTTGA+CGG - chr1_1:57162422-57162441 None:intergenic 35.0%
TGACTGTGTACATACATTTC+TGG + chr1_1:57162641-57162660 Msa0030740:intron 35.0%
! AACAGAGACATGCTATCTTT+TGG + chr1_1:57162721-57162740 Msa0030740:five_prime_UTR 35.0%
!! TCTTTTGGAAGGAAAAGTGA+AGG + chr1_1:57162736-57162755 Msa0030740:five_prime_UTR 35.0%
TGAAATTTCTGCTGGTGATT+TGG + chr1_1:57162787-57162806 Msa0030740:five_prime_UTR 35.0%
!! GATTTGGTTGTTTTCCCAAA+AGG + chr1_1:57162803-57162822 Msa0030740:five_prime_UTR 35.0%
! AAGTACAACTCATCCCTTTT+GGG - chr1_1:57162820-57162839 None:intergenic 35.0%
AAAAGGGATGAGTTGTACTT+GGG + chr1_1:57162820-57162839 Msa0030740:five_prime_UTR 35.0%
ACATGCCTAATGTATGATGA+TGG + chr1_1:57162896-57162915 Msa0030740:five_prime_UTR 35.0%
GTCTTCCATCATCATACATT+AGG - chr1_1:57162904-57162923 None:intergenic 35.0%
! GAGCAAAAAGTATAGTCTAG+GGG - chr1_1:57163020-57163039 None:intergenic 35.0%
! CTTAAATTTGGGTTTCACAC+TGG - chr1_1:57163139-57163158 None:intergenic 35.0%
CAGTGTGAAACCCAAATTTA+AGG + chr1_1:57163137-57163156 Msa0030740:five_prime_UTR 35.0%
TCCAGTGGTACCTTAAATTT+GGG - chr1_1:57163150-57163169 None:intergenic 35.0%
ATCCAGTGGTACCTTAAATT+TGG - chr1_1:57163151-57163170 None:intergenic 35.0%
! TACCACTGGATAAGTTTTTG+TGG + chr1_1:57163160-57163179 Msa0030740:five_prime_UTR 35.0%
! CGAGAATGAATGCTTTTGTA+AGG - chr1_1:57163200-57163219 None:intergenic 35.0%
AAGAAGAAGAACAAGATGTC+AGG + chr1_1:57163588-57163607 Msa0030740:exon 35.0%
TAAATCGCAGCTAATGTAAG+TGG - chr1_1:57163900-57163919 None:intergenic 35.0%
ACTTACATTAGCTGCGATTT+AGG + chr1_1:57163899-57163918 Msa0030740:intron 35.0%
GCTTGATGTGGTATTATATG+AGG + chr1_1:57163979-57163998 Msa0030740:intron 35.0%
TGATAACAGATCACAACTGA+GGG - chr1_1:57164177-57164196 None:intergenic 35.0%
! TTGATAACAGATCACAACTG+AGG - chr1_1:57164178-57164197 None:intergenic 35.0%
GCAGACATCTTGAAGAAAAA+TGG + chr1_1:57164439-57164458 Msa0030740:CDS 35.0%
TTTGTGACATTGAGGAAAGA+TGG + chr1_1:57164514-57164533 Msa0030740:CDS 35.0%
TCAGTAACATATCAGCACTA+GGG - chr1_1:57164567-57164586 None:intergenic 35.0%
TTCAGTAACATATCAGCACT+AGG - chr1_1:57164568-57164587 None:intergenic 35.0%
TGTCCTATGATCCAAATGTT+AGG + chr1_1:57164722-57164741 Msa0030740:CDS 35.0%
AAGCCTAACATTTGGATCAT+AGG - chr1_1:57164728-57164747 None:intergenic 35.0%
! GAATGAGGCTGATTTCATTA+AGG + chr1_1:57164798-57164817 Msa0030740:CDS 35.0%
GGAAGTCTATTAAATGATGG+AGG + chr1_1:57164854-57164873 Msa0030740:intron 35.0%
GGAGGATATAACAGAAACAA+TGG + chr1_1:57164872-57164891 Msa0030740:intron 35.0%
!! AACATGTTCTAGAGTCAGTT+TGG + chr1_1:57164908-57164927 Msa0030740:intron 35.0%
! TCAAAGAATGCAGTTTTTGC+CGG + chr1_1:57164988-57165007 Msa0030740:intron 35.0%
ATAACAGCTTCTTCATTCTC+AGG - chr1_1:57165102-57165121 None:intergenic 35.0%
AAGAAGCTGTTATGTCTATG+TGG + chr1_1:57165109-57165128 Msa0030740:CDS 35.0%
AAGCTGCTTATTATCACTGA+TGG + chr1_1:57165144-57165163 Msa0030740:CDS 35.0%
TATTATCACTGATGGAGAGA+AGG + chr1_1:57165152-57165171 Msa0030740:CDS 35.0%
ATTATCACTGATGGAGAGAA+GGG + chr1_1:57165153-57165172 Msa0030740:CDS 35.0%
AAGTCCTTGTAAGACTGTTT+CGG + chr1_1:57165354-57165373 Msa0030740:intron 35.0%
AAGAGACCCTTCTATATTTG+AGG + chr1_1:57165744-57165763 Msa0030740:CDS 35.0%
! GTATTTTTCTGTCACTAGAG+TGG - chr1_1:57165801-57165820 None:intergenic 35.0%
! GTCAAAGTCTCTCTCAATTT+TGG - chr1_1:57165908-57165927 None:intergenic 35.0%
TTGACATTTGCAAATGCTTG+TGG + chr1_1:57165923-57165942 Msa0030740:CDS 35.0%
! GAAATTTGATGATAGTCCAG+AGG + chr1_1:57166047-57166066 Msa0030740:three_prime_UTR 35.0%
ATGGCATCATCATCATGTGT+AGG + chr1_1:57162052-57162071 Msa0030740:five_prime_UTR 40.0%
AGGCAAAGTTACACTTACCT+TGG - chr1_1:57162116-57162135 None:intergenic 40.0%
CAACCAGATTAATACACCGT+CGG + chr1_1:57162380-57162399 Msa0030740:intron 40.0%
! GTCCTCCAAGTAATTTTCCA+TGG + chr1_1:57162687-57162706 Msa0030740:five_prime_UTR 40.0%
GTCCATGGAAAATTACTTGG+AGG - chr1_1:57162692-57162711 None:intergenic 40.0%
TCTGTTGCATCATATGTCCA+TGG - chr1_1:57162707-57162726 None:intergenic 40.0%
! GAGACATGCTATCTTTTGGA+AGG + chr1_1:57162725-57162744 Msa0030740:five_prime_UTR 40.0%
! CAAGTACAACTCATCCCTTT+TGG - chr1_1:57162821-57162840 None:intergenic 40.0%
CAAAAGGGATGAGTTGTACT+TGG + chr1_1:57162819-57162838 Msa0030740:five_prime_UTR 40.0%
! ACCCAAATTTAAGGTACCAC+TGG + chr1_1:57163146-57163165 Msa0030740:five_prime_UTR 40.0%
CACCACAAAAACTTATCCAG+TGG - chr1_1:57163165-57163184 None:intergenic 40.0%
TCGCCGAATGATATCACTAA+TGG - chr1_1:57163624-57163643 None:intergenic 40.0%
! GATTTTGTTCCAGACACATC+TGG + chr1_1:57163654-57163673 Msa0030740:CDS 40.0%
! GAAAGCATAAGATTCAGCCA+AGG - chr1_1:57163685-57163704 None:intergenic 40.0%
! GTCGAGCCGTTGATATTTTA+CGG - chr1_1:57164280-57164299 None:intergenic 40.0%
TGCAATGATTGCAATGTGAC+AGG + chr1_1:57164387-57164406 Msa0030740:intron 40.0%
ATGATTGCAATGTGACAGGT+AGG + chr1_1:57164391-57164410 Msa0030740:intron 40.0%
TGATTGCAATGTGACAGGTA+GGG + chr1_1:57164392-57164411 Msa0030740:intron 40.0%
!!! TGGTGTTTGTTTTGACACAG+AGG + chr1_1:57164474-57164493 Msa0030740:CDS 40.0%
CATTGGCATTTGTGACATTG+AGG + chr1_1:57164506-57164525 Msa0030740:CDS 40.0%
ATTGAGGAAAGATGGAGAGA+GGG + chr1_1:57164522-57164541 Msa0030740:CDS 40.0%
CACAAAGGAAGCCTAACATT+TGG - chr1_1:57164736-57164755 None:intergenic 40.0%
CAAATGTTAGGCTTCCTTTG+TGG + chr1_1:57164734-57164753 Msa0030740:CDS 40.0%
!! GGTCTGGAATCAAAAGCATT+TGG + chr1_1:57164776-57164795 Msa0030740:CDS 40.0%
TTTGCCGGAATCTGTTAAAG+CGG + chr1_1:57165003-57165022 Msa0030740:intron 40.0%
GAAACCGCTTTAACAGATTC+CGG - chr1_1:57165010-57165029 None:intergenic 40.0%
TTATGTCTATGTGGCATGAC+AGG + chr1_1:57165118-57165137 Msa0030740:CDS 40.0%
GGGTTGTAGATATGTCACTA+AGG + chr1_1:57165173-57165192 Msa0030740:CDS 40.0%
CTTACAAGGACTTATGTCAG+TGG - chr1_1:57165347-57165366 None:intergenic 40.0%
TTGTCCGAAACAGTCTTACA+AGG - chr1_1:57165361-57165380 None:intergenic 40.0%
!! AGTTTAGTTGGCTTTAGAGC+TGG - chr1_1:57166020-57166039 None:intergenic 40.0%
! AACACCAAGTTGAGTGAGCT+TGG - chr1_1:57162215-57162234 None:intergenic 45.0%
!! CTCAACTTGGTGTTAGACAG+TGG + chr1_1:57162221-57162240 Msa0030740:five_prime_UTR 45.0%
ACACCGACGGTGTATTAATC+TGG - chr1_1:57162386-57162405 None:intergenic 45.0%
AAAGTGAAGGTCACTCCTAG+TGG + chr1_1:57162749-57162768 Msa0030740:five_prime_UTR 45.0%
AAGTGAAGGTCACTCCTAGT+GGG + chr1_1:57162750-57162769 Msa0030740:five_prime_UTR 45.0%
GAGGCAGTTGAAATTTCTGC+TGG + chr1_1:57162779-57162798 Msa0030740:five_prime_UTR 45.0%
TGTACTTGGGATGTGTCTGT+TGG + chr1_1:57162833-57162852 Msa0030740:five_prime_UTR 45.0%
! CTAGGGGAGTGCATTTAAGA+TGG - chr1_1:57163004-57163023 None:intergenic 45.0%
CACACTGGTCCCACTTATAT+AGG - chr1_1:57163124-57163143 None:intergenic 45.0%
! AGACCAAGCAGCGCAATTTT+TGG + chr1_1:57163275-57163294 Msa0030740:five_prime_UTR 45.0%
TGACCAAAAATTGCGCTGCT+TGG - chr1_1:57163281-57163300 None:intergenic 45.0%
!!! AGCAGCGCAATTTTTGGTCA+AGG + chr1_1:57163281-57163300 Msa0030740:five_prime_UTR 45.0%
AAGGATACACCAGATGTGTC+TGG - chr1_1:57163666-57163685 None:intergenic 45.0%
AGACACATCTGGTGTATCCT+TGG + chr1_1:57163665-57163684 Msa0030740:CDS 45.0%
TATGCTTTCATCAAAGCCCC+TGG + chr1_1:57163696-57163715 Msa0030740:CDS 45.0%
ACTAAGAACCTTGCCGATGA+AGG - chr1_1:57163775-57163794 None:intergenic 45.0%
TCGCAGCTAATGTAAGTGGA+AGG - chr1_1:57163896-57163915 None:intergenic 45.0%
GTCTATCAATGGGGAAACTC+TGG - chr1_1:57163932-57163951 None:intergenic 45.0%
ACTGAGGTTATGGCTTGATG+TGG + chr1_1:57163967-57163986 Msa0030740:intron 45.0%
GATTGCAATGTGACAGGTAG+GGG + chr1_1:57164393-57164412 Msa0030740:intron 45.0%
TAGGGGATGATGAGTTTGGA+AGG + chr1_1:57164410-57164429 Msa0030740:CDS 45.0%
CATTGAGGAAAGATGGAGAG+AGG + chr1_1:57164521-57164540 Msa0030740:CDS 45.0%
ACCATGCAGATCTGCTCATA+TGG + chr1_1:57164663-57164682 Msa0030740:CDS 45.0%
ACCTTCTCTAGCAGCTTTCA+TGG - chr1_1:57164692-57164711 None:intergenic 45.0%
ATGAAAGCTGCTAGAGAAGG+TGG + chr1_1:57164691-57164710 Msa0030740:CDS 45.0%
! GGTAAGTGGATTCTCAGTGA+AGG + chr1_1:57165663-57165682 Msa0030740:CDS 45.0%
GTGAAGGCAATTGACACAAC+TGG + chr1_1:57165679-57165698 Msa0030740:CDS 45.0%
!!! GGTGCTGGTGATTCTTTTGT+TGG + chr1_1:57165700-57165719 Msa0030740:CDS 45.0%
AGCAATGTGCACAACACAGA+AGG + chr1_1:57165946-57165965 Msa0030740:CDS 45.0%
GCAATGTGCACAACACAGAA+GGG + chr1_1:57165947-57165966 Msa0030740:CDS 45.0%
GCAGCTGTCACAGAGAAACT+TGG + chr1_1:57162160-57162179 Msa0030740:five_prime_UTR 50.0%
AGTTGAGTGAGCTTGGACTC+AGG - chr1_1:57162208-57162227 None:intergenic 50.0%
GAGTCCAAGCTCACTCAACT+TGG + chr1_1:57162208-57162227 Msa0030740:five_prime_UTR 50.0%
AGTGAAGGTCACTCCTAGTG+GGG + chr1_1:57162751-57162770 Msa0030740:five_prime_UTR 50.0%
TTGGGATGTGTCTGTTGGTG+TGG + chr1_1:57162838-57162857 Msa0030740:five_prime_UTR 50.0%
GCTTGTGCTGTGTCCAAACT+TGG + chr1_1:57163738-57163757 Msa0030740:CDS 50.0%
TGTGCTGTGTCCAAACTTGG+TGG + chr1_1:57163741-57163760 Msa0030740:CDS 50.0%
CAGGTAGGGGATGATGAGTT+TGG + chr1_1:57164406-57164425 Msa0030740:intron 50.0%
CACAGAGGCAAGAACTGCAT+TGG + chr1_1:57164489-57164508 Msa0030740:CDS 50.0%
GCCATATGAGCAGATCTGCA+TGG - chr1_1:57164667-57164686 None:intergenic 50.0%
GCCATGAAAGCTGCTAGAGA+AGG + chr1_1:57164688-57164707 Msa0030740:CDS 50.0%
GCAATTGACACAACTGGTGC+TGG + chr1_1:57165685-57165704 Msa0030740:CDS 50.0%
! AGCAGTTGGAAGTGCAGGAA+TGG - chr1_1:57165975-57165994 None:intergenic 50.0%
! TCTTCAGCAGTTGGAAGTGC+AGG - chr1_1:57165980-57165999 None:intergenic 50.0%
TGCACTTCCAACTGCTGAAG+AGG + chr1_1:57165979-57165998 Msa0030740:CDS 50.0%
TTCTGAGCCTCTTCAGCAGT+TGG - chr1_1:57165989-57166008 None:intergenic 50.0%
GAGTGAGCTTGGACTCAGGA+GGG - chr1_1:57162204-57162223 None:intergenic 55.0%
TGAGTGAGCTTGGACTCAGG+AGG - chr1_1:57162205-57162224 None:intergenic 55.0%
CACTCCTAGTGGGGCTAATG+AGG + chr1_1:57162760-57162779 Msa0030740:five_prime_UTR 55.0%
ACTGCCTCATTAGCCCCACT+AGG - chr1_1:57162767-57162786 None:intergenic 55.0%
GCTTTCATCAAAGCCCCTGG+TGG + chr1_1:57163699-57163718 Msa0030740:CDS 55.0%
ACAGCACAAGCCACATTGGC+AGG - chr1_1:57163729-57163748 None:intergenic 55.0%
GGACACAGCACAAGCCACAT+TGG - chr1_1:57163733-57163752 None:intergenic 55.0%
GGCAGCATTGCCACCAAGTT+TGG - chr1_1:57163754-57163773 None:intergenic 55.0%
GGTGGCAATGCTGCCTTCAT+CGG + chr1_1:57163759-57163778 Msa0030740:CDS 55.0%
CAATGCTGCCTTCATCGGCA+AGG + chr1_1:57163764-57163783 Msa0030740:CDS 55.0%
TCCTTTGTGGCCTTCTGCTG+AGG + chr1_1:57164747-57164766 Msa0030740:CDS 55.0%
!! ATTGGCAGGAGCACCACCAG+GGG - chr1_1:57163715-57163734 None:intergenic 60.0%
!! CATTGGCAGGAGCACCACCA+GGG - chr1_1:57163716-57163735 None:intergenic 60.0%
!! ACATTGGCAGGAGCACCACC+AGG - chr1_1:57163717-57163736 None:intergenic 60.0%
! TGGTGGTGCTCCTGCCAATG+TGG + chr1_1:57163716-57163735 Msa0030740:CDS 60.0%
GCCTCAGCAGAAGGCCACAA+AGG - chr1_1:57164751-57164770 None:intergenic 60.0%
GACCTAGCAGCCTCAGCAGA+AGG - chr1_1:57164760-57164779 None:intergenic 60.0%
TCTGCTGAGGCTGCTAGGTC+TGG + chr1_1:57164760-57164779 Msa0030740:CDS 60.0%
GGCCTTCTGCTGAGGCTGCT+AGG + chr1_1:57164755-57164774 Msa0030740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 57161862 57166120 57161862 ID=Msa0030740;Name=Msa0030740
chr1_1 mRNA 57161862 57166120 57161862 ID=Msa0030740-mRNA-1;Parent=Msa0030740;Name=Msa0030740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1311|1|1|1|1|0.83|6|84|327
chr1_1 exon 57161862 57162248 57161862 ID=Msa0030740-mRNA-1:exon:17193;Parent=Msa0030740-mRNA-1
chr1_1 exon 57162679 57163785 57162679 ID=Msa0030740-mRNA-1:exon:17194;Parent=Msa0030740-mRNA-1
chr1_1 exon 57164409 57164819 57164409 ID=Msa0030740-mRNA-1:exon:17195;Parent=Msa0030740-mRNA-1
chr1_1 exon 57165060 57165194 57165060 ID=Msa0030740-mRNA-1:exon:17196;Parent=Msa0030740-mRNA-1
chr1_1 exon 57165649 57165765 57165649 ID=Msa0030740-mRNA-1:exon:17197;Parent=Msa0030740-mRNA-1
chr1_1 exon 57165899 57166120 57165899 ID=Msa0030740-mRNA-1:exon:17198;Parent=Msa0030740-mRNA-1
chr1_1 five_prime_UTR 57161862 57162248 57161862 ID=Msa0030740-mRNA-1:five_prime_utr;Parent=Msa0030740-mRNA-1
chr1_1 five_prime_UTR 57162679 57163602 57162679 ID=Msa0030740-mRNA-1:five_prime_utr;Parent=Msa0030740-mRNA-1
chr1_1 CDS 57163603 57163785 57163603 ID=Msa0030740-mRNA-1:cds;Parent=Msa0030740-mRNA-1
chr1_1 CDS 57164409 57164819 57164409 ID=Msa0030740-mRNA-1:cds;Parent=Msa0030740-mRNA-1
chr1_1 CDS 57165060 57165194 57165060 ID=Msa0030740-mRNA-1:cds;Parent=Msa0030740-mRNA-1
chr1_1 CDS 57165649 57165765 57165649 ID=Msa0030740-mRNA-1:cds;Parent=Msa0030740-mRNA-1
chr1_1 CDS 57165899 57166036 57165899 ID=Msa0030740-mRNA-1:cds;Parent=Msa0030740-mRNA-1
chr1_1 three_prime_UTR 57166037 57166120 57166037 ID=Msa0030740-mRNA-1:three_prime_utr;Parent=Msa0030740-mRNA-1
Gene Sequence

>Msa0030740

ATGTCAGGCTCAAAAGATCCATTAGTGATATCATTCGGCGAGATGCTCATAGATTTTGTTCCAGACACATCTGGTGTATCCTTGGCTGAATCTTATGCTTTCATCAAAGCCCCTGGTGGTGCTCCTGCCAATGTGGCTTGTGCTGTGTCCAAACTTGGTGGCAATGCTGCCTTCATCGGCAAGGTAGGGGATGATGAGTTTGGAAGGATGCTAGCAGACATCTTGAAGAAAAATGGAGTGAATACAGATGGTGTTTGTTTTGACACAGAGGCAAGAACTGCATTGGCATTTGTGACATTGAGGAAAGATGGAGAGAGGGAGTTCATGTTTTATAGAAACCCTAGTGCTGATATGTTACTGAAAGAATCTGAATTGAACATGGATATGATTAAGAATACAAAGATATTCCATTATGGATCCATTAGTCTTATTTCAGAACCATGCAGATCTGCTCATATGGCTGCCATGAAAGCTGCTAGAGAAGGTGGTGCTTTGTTGTCCTATGATCCAAATGTTAGGCTTCCTTTGTGGCCTTCTGCTGAGGCTGCTAGGTCTGGAATCAAAAGCATTTGGAATGAGGCTGATTTCATTAAGGTAAGTGATGATGAAGTTCAATTTCTTACACAAAAAGATCCTGAGAATGAAGAAGCTGTTATGTCTATGTGGCATGACAGGTTGAAGCTGCTTATTATCACTGATGGAGAGAAGGGTTGTAGATATGTCACTAAGAATTTTAAAGGAAGGGTAAGTGGATTCTCAGTGAAGGCAATTGACACAACTGGTGCTGGTGATTCTTTTGTTGGTGCACTTCTCAGAGATGTAGCAAGAGACCCTTCTATATTTGAGGATGAACCAAAATTGAGAGAGACTTTGACATTTGCAAATGCTTGTGGAGCAATGTGCACAACACAGAAGGGAGCCATTCCTGCACTTCCAACTGCTGAAGAGGCTCAGAAATTTATTTCCAGCTCTAAAGCCAACTAA

Protein sequence

>Msa0030740

MSGSKDPLVISFGEMLIDFVPDTSGVSLAESYAFIKAPGGAPANVACAVSKLGGNAAFIGKVGDDEFGRMLADILKKNGVNTDGVCFDTEARTALAFVTLRKDGEREFMFYRNPSADMLLKESELNMDMIKNTKIFHYGSISLISEPCRSAHMAAMKAAREGGALLSYDPNVRLPLWPSAEAARSGIKSIWNEADFIKVSDDEVQFLTQKDPENEEAVMSMWHDRLKLLIITDGEKGCRYVTKNFKGRVSGFSVKAIDTTGAGDSFVGALLRDVARDPSIFEDEPKLRETLTFANACGAMCTTQKGAIPALPTAEEAQKFISSSKAN*