AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098550 MtrunA17_Chr1g0151581 98.016 252 5 0 1 252 1 252 0.0 504
Msa0098550 MtrunA17_Chr5g0401491 47.205 161 84 1 50 210 66 225 4.78e-43 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098550 AT5G11840.1 61.328 256 75 5 13 248 9 260 9.44e-104 302
Msa0098550 AT5G11840.3 64.674 184 53 2 13 184 9 192 1.01e-80 241
Msa0098550 AT5G11840.4 64.481 183 53 2 13 183 9 191 4.42e-80 239
Msa0098550 AT5G11840.2 60.479 167 54 2 13 167 9 175 1.07e-66 205
Msa0098550 AT5G67370.1 41.969 193 111 1 18 210 49 240 1.16e-42 148

Find 76 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACGACTGGTACTCGTTTA+TGG 0.126473 1_3:-4580820 None:intergenic
GTTGATGGAGGGAATAGTTT+TGG 0.223696 1_3:-4580666 None:intergenic
TGTTGGAGTGAATGGGAAAA+AGG 0.250745 1_3:-4580695 None:intergenic
GATATTGTTGCCATTCTTGC+TGG 0.277198 1_3:-4580630 None:intergenic
CTTTGTTCTGTTGCTGTTGT+TGG 0.293720 1_3:-4580733 None:intergenic
TGGCTTGGTTTGGAACTGTT+GGG 0.311583 1_3:+4580946 Msa0098550:CDS
TGCTGCTTCTAGTGGTGTTT+TGG 0.320044 1_3:+4581001 Msa0098550:CDS
GGTGAAGACTGCTGAGGTTT+TGG 0.325730 1_3:+4582647 Msa0098550:CDS
GGGTTACCTGTGGCTTGGTT+TGG 0.356647 1_3:+4580936 Msa0098550:CDS
AACGACTGGTACTCGTTTAT+GGG 0.360388 1_3:-4580819 None:intergenic
TCTGTTGCTGTTGTTGGTAA+TGG 0.366769 1_3:-4580727 None:intergenic
TCTAGGATGGGATACTTCTT+AGG 0.373021 1_3:-4583919 None:intergenic
GTGGCTTGGTTTGGAACTGT+TGG 0.374589 1_3:+4580945 Msa0098550:CDS
GGTAATGGTGATTGATTTGT+TGG 0.385707 1_3:-4580712 None:intergenic
TTGTTAGGATGTATCTTGGT+TGG 0.396546 1_3:+4581039 Msa0098550:CDS
ATGTTGTTGAATACGGTTCC+CGG 0.401820 1_3:+4580877 Msa0098550:CDS
GATTGATTTGTTGGAGTGAA+TGG 0.424418 1_3:-4580703 None:intergenic
GGTATTAATGTGGAGGGAAA+GGG 0.424446 1_3:+4583954 Msa0098550:three_prime_UTR
TGTTAGGATGTATCTTGGTT+GGG 0.425759 1_3:+4581040 Msa0098550:CDS
AAAAGCCCACAACGAAAAGC+CGG 0.429370 1_3:-4580896 None:intergenic
GCGGTTGTTAGGATGTATCT+TGG 0.430246 1_3:+4581035 Msa0098550:CDS
GGCTGCTGTTCTAACGGAAC+AGG 0.440485 1_3:-4580798 None:intergenic
AACAAGTAACCCAGCAAGAA+TGG 0.440819 1_3:+4580620 Msa0098550:exon
ATCTTGGTTGGGCTTATGTT+GGG 0.441526 1_3:+4581051 Msa0098550:CDS
TTGGCACGTGATAGACTCTT+GGG 0.445944 1_3:+4582666 Msa0098550:CDS
CACCAGCAGCCCATGAAAAC+GGG 0.453557 1_3:-4580854 None:intergenic
AGTCGGTCTGGCAGCATGCT+TGG 0.454960 1_3:+4583731 Msa0098550:CDS
GCTGGTGATGTTGTTGAATA+CGG 0.456887 1_3:+4580870 Msa0098550:CDS
TTTGGCACGTGATAGACTCT+TGG 0.457104 1_3:+4582665 Msa0098550:CDS
TATTTAACATCGAGAGAAAC+CGG 0.458605 1_3:+4583792 Msa0098550:CDS
CTCTGTTTAAGTTCAAGAAA+CGG 0.462020 1_3:+4580765 Msa0098550:CDS
TCACCAGCAGCCCATGAAAA+CGG 0.464675 1_3:-4580855 None:intergenic
TCCAGGTATTGCTCGAACTC+CGG 0.467416 1_3:-4583811 None:intergenic
TATATTGCAGATGAGGAGAC+AGG 0.467504 1_3:+4581983 Msa0098550:intron
ATGTACTATTCTTCAAGATC+AGG 0.468774 1_3:-4583888 None:intergenic
TATCTTGGTTGGGCTTATGT+TGG 0.471423 1_3:+4581050 Msa0098550:CDS
TGGTATTAATGTGGAGGGAA+AGG 0.473092 1_3:+4583953 Msa0098550:three_prime_UTR
GGCTCACCACAAAATGCATC+TGG 0.473478 1_3:-4583867 None:intergenic
ATTGATTTGTTGGAGTGAAT+GGG 0.475696 1_3:-4580702 None:intergenic
GACAGGGTGGTATGATGGCC+AGG 0.475845 1_3:+4582000 Msa0098550:CDS
ATACCATGCATGGAGGATCT+AGG 0.480459 1_3:-4583936 None:intergenic
TTGTGGGGTTACCTGTGGCT+TGG 0.484321 1_3:+4580931 Msa0098550:CDS
GAAAATCACTCTAGTCGGTC+TGG 0.491715 1_3:+4583719 Msa0098550:CDS
GTGAAATGCTACTACATGTA+TGG 0.492083 1_3:-4584034 None:intergenic
CATGTATGGTAAGTAAGAAA+AGG 0.496335 1_3:-4584020 None:intergenic
ACCGGAGTTCGAGCAATACC+TGG 0.506149 1_3:+4583810 Msa0098550:CDS
GGCTTGGTTTGGAACTGTTG+GGG 0.506638 1_3:+4580947 Msa0098550:CDS
GCACAAACAATTCTCTTAGC+AGG 0.508243 1_3:-4580981 None:intergenic
GCTCTGTTTCACTTTGCCGT+TGG 0.508588 1_3:-4580588 None:intergenic
GAGGAGACAGGGTGGTATGA+TGG 0.516290 1_3:+4581995 Msa0098550:CDS
ATTGTTTGTGCTGCTTCTAG+TGG 0.521546 1_3:+4580993 Msa0098550:CDS
GATTCATCATTGTAAGCTCC+AGG 0.524014 1_3:-4583828 None:intergenic
AAAGCCCACAACGAAAAGCC+GGG 0.532515 1_3:-4580895 None:intergenic
TTTATGGGCTGCTGTTCTAA+CGG 0.540735 1_3:-4580804 None:intergenic
CTCCACATTAATACCATGCA+TGG 0.543181 1_3:-4583946 None:intergenic
ATATTGTTGCCATTCTTGCT+GGG 0.548979 1_3:-4580629 None:intergenic
GTATTAATGTGGAGGGAAAG+GGG 0.552360 1_3:+4583955 Msa0098550:three_prime_UTR
CTTGCTTGTGGGGTTACCTG+TGG 0.557353 1_3:+4580926 Msa0098550:CDS
GCAAAGTGAAACAGAGCAGT+AGG 0.560112 1_3:+4580594 Msa0098550:five_prime_UTR
CACAGGTAACCCCACAAGCA+AGG 0.573824 1_3:-4580925 None:intergenic
TTCAAGGTTAAGCCTGTACT+CGG 0.578638 1_3:+4583690 Msa0098550:intron
CTCCATGCATGGTATTAATG+TGG 0.580181 1_3:+4583944 Msa0098550:three_prime_UTR
CATGCATGGAGGATCTAGGA+TGG 0.585585 1_3:-4583932 None:intergenic
GGAACGATGTCGATAACGAC+TGG 0.595019 1_3:-4580833 None:intergenic
AGATTGAAAATCACTCTAGT+CGG 0.609573 1_3:+4583714 Msa0098550:CDS
CATCCTAGATCCTCCATGCA+TGG 0.611902 1_3:+4583933 Msa0098550:three_prime_UTR
CATGCATGGTATTAATGTGG+AGG 0.616854 1_3:+4583947 Msa0098550:three_prime_UTR
ATGCATGGTATTAATGTGGA+GGG 0.620228 1_3:+4583948 Msa0098550:three_prime_UTR
ATGCATGGAGGATCTAGGAT+GGG 0.624436 1_3:-4583931 None:intergenic
ACAGTTCCAAACCAAGCCAC+AGG 0.624924 1_3:-4580942 None:intergenic
GTGGCCAACAACAAAACCAA+CGG 0.646386 1_3:+4580572 None:intergenic
CACATTAATACCATGCATGG+AGG 0.657724 1_3:-4583943 None:intergenic
ATATTGCAGATGAGGAGACA+GGG 0.660822 1_3:+4581984 Msa0098550:intron
AGATACATTACATTCAACAG+TGG 0.729086 1_3:-4581090 None:intergenic
TTGCAGATGAGGAGACAGGG+TGG 0.732719 1_3:+4581987 Msa0098550:intron
GATATGGGTGAAGACTGCTG+AGG 0.749406 1_3:+4582641 Msa0098550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTACATATAAAATCT+TGG + chr1_3:4582037-4582056 Msa0098550:intron 10.0%
!!! GCAATAATTTTATAGTTAAA+CGG + chr1_3:4581804-4581823 Msa0098550:intron 15.0%
!!! TTGTTTATATGGAAGATTTT+TGG - chr1_3:4581602-4581621 None:intergenic 20.0%
!! AAAAATCTTCCATATAAACA+AGG + chr1_3:4581601-4581620 Msa0098550:intron 20.0%
!! TATCATATACGATTAATGTT+AGG + chr1_3:4581832-4581851 Msa0098550:intron 20.0%
!!! ATATTGTTAGTGTTATTCAA+TGG + chr1_3:4581910-4581929 Msa0098550:intron 20.0%
!! TTCATCTACATAAATTCATT+GGG - chr1_3:4582173-4582192 None:intergenic 20.0%
!! TTTCATCTACATAAATTCAT+TGG - chr1_3:4582174-4582193 None:intergenic 20.0%
!! ATTTATGTAGATGAAACTAA+CGG + chr1_3:4582178-4582197 Msa0098550:intron 20.0%
!!! TAATATTAATGTGTCGATTA+TGG - chr1_3:4582410-4582429 None:intergenic 20.0%
!! ATATCTGTAGAGAAATATTT+AGG - chr1_3:4582626-4582645 None:intergenic 20.0%
!! TAAATATTTCTCTACAGATA+TGG + chr1_3:4582625-4582644 Msa0098550:intron 20.0%
!! AAATATTTCTCTACAGATAT+GGG + chr1_3:4582626-4582645 Msa0098550:intron 20.0%
!!! TAAATAATTCCTGAATCTTT+TGG - chr1_3:4582910-4582929 None:intergenic 20.0%
!! GATCTTAAAGACTTAATATT+AGG - chr1_3:4583152-4583171 None:intergenic 20.0%
!! CATAAGGTTAAATTTAACAA+AGG - chr1_3:4583331-4583350 None:intergenic 20.0%
!! CTTTGTTAAATTTAACCTTA+TGG + chr1_3:4583329-4583348 Msa0098550:intron 20.0%
!! CAAAAACATAAATTTCCATA+AGG - chr1_3:4583347-4583366 None:intergenic 20.0%
!!! GAATATCAACAGATTTTAAA+AGG - chr1_3:4583597-4583616 None:intergenic 20.0%
! TTATCTATTACTTCCATGTA+TGG + chr1_3:4581134-4581153 Msa0098550:intron 25.0%
! TGTATTTACATCTCACTTAA+GGG - chr1_3:4581316-4581335 None:intergenic 25.0%
! TTGTATTTACATCTCACTTA+AGG - chr1_3:4581317-4581336 None:intergenic 25.0%
! TTCATATCATTAACGTATCA+TGG - chr1_3:4581888-4581907 None:intergenic 25.0%
! ATAAAGAGAAAACAATTACC+TGG - chr1_3:4582021-4582040 None:intergenic 25.0%
!! TCTAAAGTCACATATATGAT+TGG + chr1_3:4582469-4582488 Msa0098550:intron 25.0%
!!! AACTTGTTTGTGTTTTACTA+AGG + chr1_3:4582545-4582564 Msa0098550:intron 25.0%
!! ACTTGTTTGTGTTTTACTAA+GGG + chr1_3:4582546-4582565 Msa0098550:intron 25.0%
!! TTTAAGACTATGTAAGTAGT+AGG + chr1_3:4582832-4582851 Msa0098550:intron 25.0%
! TTAAGACTATGTAAGTAGTA+GGG + chr1_3:4582833-4582852 Msa0098550:intron 25.0%
! TGACATATCACAAAATATAG+TGG - chr1_3:4583104-4583123 None:intergenic 25.0%
!! TACAAGATAATTTTCATCAC+AGG - chr1_3:4583375-4583394 None:intergenic 25.0%
! TTCAATTCATCCATTAATTG+AGG + chr1_3:4583528-4583547 Msa0098550:intron 25.0%
! ACTATACAATCCTCAATTAA+TGG - chr1_3:4583541-4583560 None:intergenic 25.0%
!! AAACTCTTTTGTAATGTTCA+AGG + chr1_3:4583674-4583693 Msa0098550:intron 25.0%
!! ATTGATTTGTTGGAGTGAAT+GGG - chr1_3:4580705-4580724 None:intergenic 30.0%
! CTCTGTTTAAGTTCAAGAAA+CGG + chr1_3:4580765-4580784 Msa0098550:CDS 30.0%
AGATACATTACATTCAACAG+TGG - chr1_3:4581093-4581112 None:intergenic 30.0%
!!! GCTATTTTGATAAACTATCG+TGG + chr1_3:4581223-4581242 Msa0098550:intron 30.0%
GTATTTACATCTCACTTAAG+GGG - chr1_3:4581315-4581334 None:intergenic 30.0%
CAAAATCGAAGATCTTATGT+GGG + chr1_3:4581412-4581431 Msa0098550:intron 30.0%
TCCAAAATAAGAGTCAATGT+TGG - chr1_3:4581449-4581468 None:intergenic 30.0%
! CAATGGTGTTAAGAAATTTG+TGG + chr1_3:4581927-4581946 Msa0098550:intron 30.0%
GTGTTAAGAAATTTGTGGAA+GGG + chr1_3:4581932-4581951 Msa0098550:intron 30.0%
TTCTGGATTACTTGTTTACT+TGG + chr1_3:4582081-4582100 Msa0098550:intron 30.0%
TTGTGTTGAAATTTCTTCAC+CGG - chr1_3:4582128-4582147 None:intergenic 30.0%
!!! TCTCTTCATTTTGTTTTGGA+TGG + chr1_3:4582323-4582342 Msa0098550:intron 30.0%
!! ATTAATGTGTCGATTATGGA+TGG - chr1_3:4582406-4582425 None:intergenic 30.0%
TTGGTATGGAAATTACTACA+AGG - chr1_3:4582891-4582910 None:intergenic 30.0%
ATTTCCATACCAAAAGATTC+AGG + chr1_3:4582898-4582917 Msa0098550:intron 30.0%
! AATTCCTGAATCTTTTGGTA+TGG - chr1_3:4582905-4582924 None:intergenic 30.0%
ACAAATGTCGTACAAAATAG+AGG + chr1_3:4583042-4583061 Msa0098550:intron 30.0%
CTCACTTGTAGTAAAACATT+AGG + chr1_3:4583217-4583236 Msa0098550:intron 30.0%
AGTGCATAAACATATCAAGA+TGG - chr1_3:4583277-4583296 None:intergenic 30.0%
! ACGATTTTGTCAAATAGGAT+AGG - chr1_3:4583505-4583524 None:intergenic 30.0%
! AAACGACGATTTTGTCAAAT+AGG - chr1_3:4583510-4583529 None:intergenic 30.0%
AGATTGAAAATCACTCTAGT+CGG + chr1_3:4583714-4583733 Msa0098550:CDS 30.0%
TATTTAACATCGAGAGAAAC+CGG + chr1_3:4583792-4583811 Msa0098550:CDS 30.0%
ATGTACTATTCTTCAAGATC+AGG - chr1_3:4583891-4583910 None:intergenic 30.0%
CATGTATGGTAAGTAAGAAA+AGG - chr1_3:4584023-4584042 None:intergenic 30.0%
ATATTGTTGCCATTCTTGCT+GGG - chr1_3:4580632-4580651 None:intergenic 35.0%
! TTGATGGAGGGAATAGTTTT+GGG - chr1_3:4580668-4580687 None:intergenic 35.0%
!! AAAGGGTTTTTGTTGATGGA+GGG - chr1_3:4580680-4580699 None:intergenic 35.0%
!! AAAAGGGTTTTTGTTGATGG+AGG - chr1_3:4580681-4580700 None:intergenic 35.0%
! GGAAAAAGGGTTTTTGTTGA+TGG - chr1_3:4580684-4580703 None:intergenic 35.0%
!! GATTGATTTGTTGGAGTGAA+TGG - chr1_3:4580706-4580725 None:intergenic 35.0%
!! GGTAATGGTGATTGATTTGT+TGG - chr1_3:4580715-4580734 None:intergenic 35.0%
! TTTTCTTTTGCCTTGCTTGT+GGG + chr1_3:4580915-4580934 Msa0098550:CDS 35.0%
TTGTTAGGATGTATCTTGGT+TGG + chr1_3:4581039-4581058 Msa0098550:CDS 35.0%
TGTTAGGATGTATCTTGGTT+GGG + chr1_3:4581040-4581059 Msa0098550:CDS 35.0%
! CCACATAAGATCTTCGATTT+TGG - chr1_3:4581414-4581433 None:intergenic 35.0%
CCAAAATCGAAGATCTTATG+TGG + chr1_3:4581411-4581430 Msa0098550:intron 35.0%
!!! GCCAACATTGACTCTTATTT+TGG + chr1_3:4581445-4581464 Msa0098550:intron 35.0%
ATAAGTGCTAGTGTTACCAA+TGG + chr1_3:4581552-4581571 Msa0098550:intron 35.0%
!! ATCTGTCATGTTTTTGCCAT+AGG - chr1_3:4581636-4581655 None:intergenic 35.0%
TGATTGCATCAATGTGAGAA+TGG + chr1_3:4581780-4581799 Msa0098550:intron 35.0%
GGTGTTAAGAAATTTGTGGA+AGG + chr1_3:4581931-4581950 Msa0098550:intron 35.0%
CTCATCTGCAATATAAAGAG+AGG - chr1_3:4581978-4581997 None:intergenic 35.0%
CTCTCTTTATATTGCAGATG+AGG + chr1_3:4581976-4581995 Msa0098550:intron 35.0%
GGTTCATCTTTGTATGCTAT+TGG + chr1_3:4582058-4582077 Msa0098550:intron 35.0%
!! TCTTTGTATGCTATTGGTTC+TGG + chr1_3:4582064-4582083 Msa0098550:intron 35.0%
TGGATTACTTGTTTACTTGG+AGG + chr1_3:4582084-4582103 Msa0098550:intron 35.0%
TGTGTTGAAATTTCTTCACC+GGG - chr1_3:4582127-4582146 None:intergenic 35.0%
!!! CTTTATTTTCCACACACTTG+TGG - chr1_3:4582213-4582232 None:intergenic 35.0%
TAAACCAAATGACAGGACAA+GGG - chr1_3:4582280-4582299 None:intergenic 35.0%
!! GAGCTCTCTTCATTTTGTTT+TGG + chr1_3:4582319-4582338 Msa0098550:intron 35.0%
!! TGGTTGTGATTTGTTGATAC+TGG + chr1_3:4582489-4582508 Msa0098550:intron 35.0%
ACAGTAAATGCTATAGCTCT+TGG - chr1_3:4582773-4582792 None:intergenic 35.0%
ATGGAAATTACTACAAGGCA+TGG - chr1_3:4582886-4582905 None:intergenic 35.0%
TTGTACTAAATAGCTCATCG+TGG - chr1_3:4583026-4583045 None:intergenic 35.0%
AATATGACACCTTAGCATAG+CGG + chr1_3:4583066-4583085 Msa0098550:intron 35.0%
ACACTGCAAGTTTCAAATTG+TGG - chr1_3:4583423-4583442 None:intergenic 35.0%
! ATTTTCAATCTACCGAGTAC+AGG - chr1_3:4583705-4583724 None:intergenic 35.0%
! TTTGAACCAGATGCATTTTG+TGG + chr1_3:4583861-4583880 Msa0098550:CDS 35.0%
ATGCATGGTATTAATGTGGA+GGG + chr1_3:4583948-4583967 Msa0098550:three_prime_UTR 35.0%
GTGAAATGCTACTACATGTA+TGG - chr1_3:4584037-4584056 None:intergenic 35.0%
AACAAGTAACCCAGCAAGAA+TGG + chr1_3:4580620-4580639 Msa0098550:exon 40.0%
GATATTGTTGCCATTCTTGC+TGG - chr1_3:4580633-4580652 None:intergenic 40.0%
!! TGATGGAGGGAATAGTTTTG+GGG - chr1_3:4580667-4580686 None:intergenic 40.0%
!! GTTGATGGAGGGAATAGTTT+TGG - chr1_3:4580669-4580688 None:intergenic 40.0%
GTTGGAGTGAATGGGAAAAA+GGG - chr1_3:4580697-4580716 None:intergenic 40.0%
TGTTGGAGTGAATGGGAAAA+AGG - chr1_3:4580698-4580717 None:intergenic 40.0%
! TCTGTTGCTGTTGTTGGTAA+TGG - chr1_3:4580730-4580749 None:intergenic 40.0%
! CTTTGTTCTGTTGCTGTTGT+TGG - chr1_3:4580736-4580755 None:intergenic 40.0%
! TTTATGGGCTGCTGTTCTAA+CGG - chr1_3:4580807-4580826 None:intergenic 40.0%
AACGACTGGTACTCGTTTAT+GGG - chr1_3:4580822-4580841 None:intergenic 40.0%
TAACGACTGGTACTCGTTTA+TGG - chr1_3:4580823-4580842 None:intergenic 40.0%
! GCTGGTGATGTTGTTGAATA+CGG + chr1_3:4580870-4580889 Msa0098550:CDS 40.0%
ATGTTGTTGAATACGGTTCC+CGG + chr1_3:4580877-4580896 Msa0098550:CDS 40.0%
! CTTTTCTTTTGCCTTGCTTG+TGG + chr1_3:4580914-4580933 Msa0098550:CDS 40.0%
! TTTCTTTTGCCTTGCTTGTG+GGG + chr1_3:4580916-4580935 Msa0098550:CDS 40.0%
GCACAAACAATTCTCTTAGC+AGG - chr1_3:4580984-4581003 None:intergenic 40.0%
!! ATTGTTTGTGCTGCTTCTAG+TGG + chr1_3:4580993-4581012 Msa0098550:CDS 40.0%
!!! TGTTTTGGCGGTTACTTTTG+CGG + chr1_3:4581016-4581035 Msa0098550:CDS 40.0%
TATCTTGGTTGGGCTTATGT+TGG + chr1_3:4581050-4581069 Msa0098550:CDS 40.0%
ATCTTGGTTGGGCTTATGTT+GGG + chr1_3:4581051-4581070 Msa0098550:CDS 40.0%
TTGTGCTCTTTCTCCATACA+TGG - chr1_3:4581150-4581169 None:intergenic 40.0%
GTCATTGTTGCAGTCTATAG+CGG + chr1_3:4581659-4581678 Msa0098550:intron 40.0%
! GTGTCGACAAATTTCCATCA+TGG - chr1_3:4581713-4581732 None:intergenic 40.0%
TATATTGCAGATGAGGAGAC+AGG + chr1_3:4581983-4582002 Msa0098550:intron 40.0%
ATATTGCAGATGAGGAGACA+GGG + chr1_3:4581984-4582003 Msa0098550:intron 40.0%
! GTTCTAAGTTCTCAAAGTCC+CGG + chr1_3:4582106-4582125 Msa0098550:intron 40.0%
! TATTTTCCACACACTTGTGG+CGG - chr1_3:4582210-4582229 None:intergenic 40.0%
ATTACCCTTGTCCTGTCATT+TGG + chr1_3:4582273-4582292 Msa0098550:intron 40.0%
CTAAACCAAATGACAGGACA+AGG - chr1_3:4582281-4582300 None:intergenic 40.0%
! CTTGTCCTGTCATTTGGTTT+AGG + chr1_3:4582279-4582298 Msa0098550:intron 40.0%
TTGCACCTAAACCAAATGAC+AGG - chr1_3:4582287-4582306 None:intergenic 40.0%
GTTCAAATTCCGCTATGCTA+AGG - chr1_3:4583078-4583097 None:intergenic 40.0%
! CACTTTTACTTGTGTCTGTG+AGG + chr1_3:4583458-4583477 Msa0098550:intron 40.0%
TTCAAGGTTAAGCCTGTACT+CGG + chr1_3:4583690-4583709 Msa0098550:intron 40.0%
GATTCATCATTGTAAGCTCC+AGG - chr1_3:4583831-4583850 None:intergenic 40.0%
! TCTAGGATGGGATACTTCTT+AGG - chr1_3:4583922-4583941 None:intergenic 40.0%
CACATTAATACCATGCATGG+AGG - chr1_3:4583946-4583965 None:intergenic 40.0%
CTCCATGCATGGTATTAATG+TGG + chr1_3:4583944-4583963 Msa0098550:three_prime_UTR 40.0%
CTCCACATTAATACCATGCA+TGG - chr1_3:4583949-4583968 None:intergenic 40.0%
CATGCATGGTATTAATGTGG+AGG + chr1_3:4583947-4583966 Msa0098550:three_prime_UTR 40.0%
TGGTATTAATGTGGAGGGAA+AGG + chr1_3:4583953-4583972 Msa0098550:three_prime_UTR 40.0%
GGTATTAATGTGGAGGGAAA+GGG + chr1_3:4583954-4583973 Msa0098550:three_prime_UTR 40.0%
GTATTAATGTGGAGGGAAAG+GGG + chr1_3:4583955-4583974 Msa0098550:three_prime_UTR 40.0%
GCAAAGTGAAACAGAGCAGT+AGG + chr1_3:4580594-4580613 Msa0098550:five_prime_UTR 45.0%
!!! TAGTTTTGGGGACATGCGTA+TGG - chr1_3:4580655-4580674 None:intergenic 45.0%
! GACATCGTTCCCGTTTTCAT+GGG + chr1_3:4580845-4580864 Msa0098550:CDS 45.0%
AAAAGCCCACAACGAAAAGC+CGG - chr1_3:4580899-4580918 None:intergenic 45.0%
!! TGGCTTGGTTTGGAACTGTT+GGG + chr1_3:4580946-4580965 Msa0098550:CDS 45.0%
!! TGCTGCTTCTAGTGGTGTTT+TGG + chr1_3:4581001-4581020 Msa0098550:CDS 45.0%
!! TGCTTCTAGTGGTGTTTTGG+CGG + chr1_3:4581004-4581023 Msa0098550:CDS 45.0%
!!! CGGTTACTTTTGCGGTTGTT+AGG + chr1_3:4581024-4581043 Msa0098550:CDS 45.0%
GCGGTTGTTAGGATGTATCT+TGG + chr1_3:4581035-4581054 Msa0098550:CDS 45.0%
AGTGCTAGTGTTACCAATGG+TGG + chr1_3:4581555-4581574 Msa0098550:intron 45.0%
!! GTGTTACCAATGGTGGATGA+TGG + chr1_3:4581562-4581581 Msa0098550:intron 45.0%
!! ATGTTTTTGCCATAGGCCCA+CGG - chr1_3:4581629-4581648 None:intergenic 45.0%
GACAGGACAAGGGTAATATC+TGG - chr1_3:4582270-4582289 None:intergenic 45.0%
TTTGGCACGTGATAGACTCT+TGG + chr1_3:4582665-4582684 Msa0098550:CDS 45.0%
TTGGCACGTGATAGACTCTT+GGG + chr1_3:4582666-4582685 Msa0098550:CDS 45.0%
CACGGGTCATCATCAAAACA+TGG - chr1_3:4582950-4582969 None:intergenic 45.0%
CTTGTGTCTGTGAGGAATTG+CGG + chr1_3:4583466-4583485 Msa0098550:intron 45.0%
GAAAATCACTCTAGTCGGTC+TGG + chr1_3:4583719-4583738 Msa0098550:CDS 45.0%
! ATGCATGGAGGATCTAGGAT+GGG - chr1_3:4583934-4583953 None:intergenic 45.0%
ATACCATGCATGGAGGATCT+AGG - chr1_3:4583939-4583958 None:intergenic 45.0%
GCTCTGTTTCACTTTGCCGT+TGG - chr1_3:4580591-4580610 None:intergenic 50.0%
GGAACGATGTCGATAACGAC+TGG - chr1_3:4580836-4580855 None:intergenic 50.0%
! CGACATCGTTCCCGTTTTCA+TGG + chr1_3:4580844-4580863 Msa0098550:CDS 50.0%
TCACCAGCAGCCCATGAAAA+CGG - chr1_3:4580858-4580877 None:intergenic 50.0%
AAAGCCCACAACGAAAAGCC+GGG - chr1_3:4580898-4580917 None:intergenic 50.0%
ACAGTTCCAAACCAAGCCAC+AGG - chr1_3:4580945-4580964 None:intergenic 50.0%
!! GTGGCTTGGTTTGGAACTGT+TGG + chr1_3:4580945-4580964 Msa0098550:CDS 50.0%
!! GGCTTGGTTTGGAACTGTTG+GGG + chr1_3:4580947-4580966 Msa0098550:CDS 50.0%
CAGAGTCCATCATCCACCAT+TGG - chr1_3:4581571-4581590 None:intergenic 50.0%
!! CAATGGTGGATGATGGACTC+TGG + chr1_3:4581569-4581588 Msa0098550:intron 50.0%
!! TCCATATAAACAAGGCGCCG+TGG + chr1_3:4581609-4581628 Msa0098550:intron 50.0%
!! CCATATAAACAAGGCGCCGT+GGG + chr1_3:4581610-4581629 Msa0098550:intron 50.0%
TCCATCATGGCGTCATGACA+TGG - chr1_3:4581700-4581719 None:intergenic 50.0%
GATATGGGTGAAGACTGCTG+AGG + chr1_3:4582641-4582660 Msa0098550:intron 50.0%
! GGTGAAGACTGCTGAGGTTT+TGG + chr1_3:4582647-4582666 Msa0098550:CDS 50.0%
TGACCCGTGCTGTCAAATAG+CGG + chr1_3:4582961-4582980 Msa0098550:intron 50.0%
! AGTGCCGCTATTTGACAGCA+CGG - chr1_3:4582968-4582987 None:intergenic 50.0%
! TCCAGGTATTGCTCGAACTC+CGG - chr1_3:4583814-4583833 None:intergenic 50.0%
GGCTCACCACAAAATGCATC+TGG - chr1_3:4583870-4583889 None:intergenic 50.0%
CATGCATGGAGGATCTAGGA+TGG - chr1_3:4583935-4583954 None:intergenic 50.0%
CATCCTAGATCCTCCATGCA+TGG + chr1_3:4583933-4583952 Msa0098550:three_prime_UTR 50.0%
GGCTGCTGTTCTAACGGAAC+AGG - chr1_3:4580801-4580820 None:intergenic 55.0%
!! TTCCCGTTTTCATGGGCTGC+TGG + chr1_3:4580852-4580871 Msa0098550:CDS 55.0%
CACCAGCAGCCCATGAAAAC+GGG - chr1_3:4580857-4580876 None:intergenic 55.0%
! GGTTCCCGGCTTTTCGTTGT+GGG + chr1_3:4580891-4580910 Msa0098550:CDS 55.0%
CACAGGTAACCCCACAAGCA+AGG - chr1_3:4580928-4580947 None:intergenic 55.0%
CTTGCTTGTGGGGTTACCTG+TGG + chr1_3:4580926-4580945 Msa0098550:CDS 55.0%
TTGTGGGGTTACCTGTGGCT+TGG + chr1_3:4580931-4580950 Msa0098550:CDS 55.0%
!! GGGTTACCTGTGGCTTGGTT+TGG + chr1_3:4580936-4580955 Msa0098550:CDS 55.0%
!! TGGTGGATGATGGACTCTGG+AGG + chr1_3:4581572-4581591 Msa0098550:intron 55.0%
!! CCCACGGCGCCTTGTTTATA+TGG - chr1_3:4581613-4581632 None:intergenic 55.0%
GCCATGTCATGACGCCATGA+TGG + chr1_3:4581696-4581715 Msa0098550:intron 55.0%
TTGCAGATGAGGAGACAGGG+TGG + chr1_3:4581987-4582006 Msa0098550:intron 55.0%
GAGGAGACAGGGTGGTATGA+TGG + chr1_3:4581995-4582014 Msa0098550:CDS 55.0%
! GTGCCGCTATTTGACAGCAC+GGG - chr1_3:4582967-4582986 None:intergenic 55.0%
ACCGGAGTTCGAGCAATACC+TGG + chr1_3:4583810-4583829 Msa0098550:CDS 55.0%
! CGGTTCCCGGCTTTTCGTTG+TGG + chr1_3:4580890-4580909 Msa0098550:CDS 60.0%
GACAGGGTGGTATGATGGCC+AGG + chr1_3:4582000-4582019 Msa0098550:CDS 60.0%
TGCAGTCCGCCACAAGTGTG+TGG + chr1_3:4582201-4582220 Msa0098550:intron 60.0%
AGTCGGTCTGGCAGCATGCT+TGG + chr1_3:4583731-4583750 Msa0098550:CDS 60.0%
!! AACAAGGCGCCGTGGGCCTA+TGG + chr1_3:4581617-4581636 Msa0098550:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4580577 4584086 4580577 ID=Msa0098550;Name=Msa0098550
chr1_3 mRNA 4580577 4584086 4580577 ID=Msa0098550-mRNA-1;Parent=Msa0098550;Name=Msa0098550-mRNA-1;_AED=0.15;_eAED=0.15;_QI=62|1|1|1|1|1|4|181|252
chr1_3 exon 4580577 4581101 4580577 ID=Msa0098550-mRNA-1:exon:1565;Parent=Msa0098550-mRNA-1
chr1_3 exon 4581993 4582021 4581993 ID=Msa0098550-mRNA-1:exon:1566;Parent=Msa0098550-mRNA-1
chr1_3 exon 4582642 4582698 4582642 ID=Msa0098550-mRNA-1:exon:1567;Parent=Msa0098550-mRNA-1
chr1_3 exon 4583696 4584086 4583696 ID=Msa0098550-mRNA-1:exon:1568;Parent=Msa0098550-mRNA-1
chr1_3 five_prime_UTR 4580577 4580638 4580577 ID=Msa0098550-mRNA-1:five_prime_utr;Parent=Msa0098550-mRNA-1
chr1_3 CDS 4580639 4581101 4580639 ID=Msa0098550-mRNA-1:cds;Parent=Msa0098550-mRNA-1
chr1_3 CDS 4581993 4582021 4581993 ID=Msa0098550-mRNA-1:cds;Parent=Msa0098550-mRNA-1
chr1_3 CDS 4582642 4582698 4582642 ID=Msa0098550-mRNA-1:cds;Parent=Msa0098550-mRNA-1
chr1_3 CDS 4583696 4583905 4583696 ID=Msa0098550-mRNA-1:cds;Parent=Msa0098550-mRNA-1
chr1_3 three_prime_UTR 4583906 4584086 4583906 ID=Msa0098550-mRNA-1:three_prime_utr;Parent=Msa0098550-mRNA-1
Gene Sequence

>Msa0098550

ATGGCAACAATATCCATACGCATGTCCCCAAAACTATTCCCTCCATCAACAAAAACCCTTTTTCCCATTCACTCCAACAAATCAATCACCATTACCAACAACAGCAACAGAACAAAGTTATCGTTGCTCTGTTTAAGTTCAAGAAACGGAACAGAGTGTCCTGTTCCGTTAGAACAGCAGCCCATAAACGAGTACCAGTCGTTATCGACATCGTTCCCGTTTTCATGGGCTGCTGGTGATGTTGTTGAATACGGTTCCCGGCTTTTCGTTGTGGGCTTTTCTTTTGCCTTGCTTGTGGGGTTACCTGTGGCTTGGTTTGGAACTGTTGGGGCACAATATGAGCCTGCTAAGAGAATTGTTTGTGCTGCTTCTAGTGGTGTTTTGGCGGTTACTTTTGCGGTTGTTAGGATGTATCTTGGTTGGGCTTATGTTGGGAATCGTTTGCTCAGTGCCACTGTTGAATATGAGGAGACAGGGTGGTATGATGGCCAGATATGGGTGAAGACTGCTGAGGTTTTGGCACGTGATAGACTCTTGGGATCATTTTCTGTTAAGCCTGTACTCGGTAGATTGAAAATCACTCTAGTCGGTCTGGCAGCATGCTTGGTGACATGTGCACTTATCTTCATTAACATTGATGAAAGTTATTTAACATCGAGAGAAACCGGAGTTCGAGCAATACCTGGAGCTTACAATGATGAATCTGCAAGATCATTTGAACCAGATGCATTTTGTGGTGAGCCTGATCTTGAAGAATAG

Protein sequence

>Msa0098550

MATISIRMSPKLFPPSTKTLFPIHSNKSITITNNSNRTKLSLLCLSSRNGTECPVPLEQQPINEYQSLSTSFPFSWAAGDVVEYGSRLFVVGFSFALLVGLPVAWFGTVGAQYEPAKRIVCAASSGVLAVTFAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLGRLKITLVGLAACLVTCALIFINIDESYLTSRETGVRAIPGAYNDESARSFEPDAFCGEPDLEE*