Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845420 | XP_013448285.1 | 98.606 | 287 | 4 | 0 | 1 | 287 | 1 | 287 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845420 | sp|Q9ZVH3|ORC6_ARATH | 64.912 | 285 | 96 | 3 | 1 | 285 | 1 | 281 | 1.17e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845420 | A0A072TY04 | 98.606 | 287 | 4 | 0 | 1 | 287 | 1 | 287 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606100 | Msa0845420 | 0.822785 | 1.967188e-53 | -8.615850e-47 |
| Msa0621710 | Msa0845420 | 0.801286 | 9.674037e-49 | -8.615850e-47 |
| Msa0647050 | Msa0845420 | 0.801489 | 8.789000e-49 | -8.615850e-47 |
| Msa0658640 | Msa0845420 | 0.804017 | 2.642914e-49 | -8.615850e-47 |
| Msa0703600 | Msa0845420 | 0.805715 | 1.167923e-49 | -8.615850e-47 |
| Msa0709200 | Msa0845420 | 0.808212 | 3.460048e-50 | -8.615850e-47 |
| Msa0709440 | Msa0845420 | 0.813445 | 2.550192e-51 | -8.615850e-47 |
| Msa0714790 | Msa0845420 | 0.813585 | 2.376111e-51 | -8.615850e-47 |
| Msa0756820 | Msa0845420 | 0.812049 | 5.155048e-51 | -8.615850e-47 |
| Msa0818880 | Msa0845420 | 0.819435 | 1.162941e-52 | -8.615850e-47 |
| Msa0190570 | Msa0845420 | 0.806590 | 7.642052e-50 | -8.615850e-47 |
| Msa0367520 | Msa0845420 | 0.811418 | 7.070217e-51 | -8.615850e-47 |
| Msa0373500 | Msa0845420 | 0.800715 | 1.265294e-48 | -8.615850e-47 |
| Msa0481890 | Msa0845420 | 0.818915 | 1.527450e-52 | -8.615850e-47 |
| Msa0343010 | Msa0845420 | 0.812249 | 4.661077e-51 | -8.615850e-47 |
| Msa0567170 | Msa0845420 | 0.809321 | 2.005059e-50 | -8.615850e-47 |
| Msa0845420 | Msa0966320 | 0.814114 | 1.816751e-51 | -8.615850e-47 |
| Msa0845420 | Msa0966480 | 0.802308 | 5.967308e-49 | -8.615850e-47 |
| Msa0845420 | Msa1042880 | 0.822252 | 2.616570e-53 | -8.615850e-47 |
| Msa0845420 | Msa1084530 | 0.812353 | 4.424747e-51 | -8.615850e-47 |
| Msa0845420 | Msa1125820 | 0.813325 | 2.709643e-51 | -8.615850e-47 |
| Msa0845420 | Msa1125990 | 0.814795 | 1.284372e-51 | -8.615850e-47 |
| Msa0845420 | Msa1171290 | 0.806812 | 6.858924e-50 | -8.615850e-47 |
| Msa0845420 | Msa1214350 | 0.802331 | 5.901594e-49 | -8.615850e-47 |
| Msa0845420 | Msa1218820 | 0.821182 | 4.624868e-53 | -8.615850e-47 |
| Msa0845420 | Msa1226520 | 0.807376 | 5.209187e-50 | -8.615850e-47 |
| Msa0845420 | Msa1244240 | 0.806170 | 9.367567e-50 | -8.615850e-47 |
| Msa0845420 | Msa1254540 | 0.800345 | 1.505196e-48 | -8.615850e-47 |
| Msa0845420 | Msa1343180 | 0.812098 | 5.030064e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845420 | MtrunA17_Chr7g0231551 | 98.606 | 287 | 4 | 0 | 1 | 287 | 1 | 287 | 0.0 | 575 |
| Msa0845420 | MtrunA17_Chr5g0416941 | 98.258 | 287 | 5 | 0 | 1 | 287 | 1 | 287 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0845420 | AT1G26840.1 | 64.912 | 285 | 96 | 3 | 1 | 285 | 1 | 281 | 1.19e-131 | 375 |
Find 70 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTCTTGTCTTGTTTAT+TGG | 0.052384 | 5_4:-24555016 | None:intergenic |
| CTATTGGTCTTCACTTCTTT+AGG | 0.138382 | 5_4:-24553165 | None:intergenic |
| GCCTCCAACTTCTGGGTTTC+AGG | 0.141809 | 5_4:-24555177 | None:intergenic |
| CTTACATCGCCTCCAACTTC+TGG | 0.167122 | 5_4:-24555185 | None:intergenic |
| TATTGGTCTTCACTTCTTTA+GGG | 0.216415 | 5_4:-24553164 | None:intergenic |
| TCTTGTTGTTTGTAGTTATA+AGG | 0.256528 | 5_4:+24552746 | Msa0845420:intron |
| TGTCTTGTTTATTGGATGTA+AGG | 0.333899 | 5_4:-24555008 | None:intergenic |
| CGATTCAATTCGGGTGTGTT+CGG | 0.341579 | 5_4:+24552609 | Msa0845420:CDS |
| GACGGAGTTCGGCGGCTTTA+CGG | 0.346724 | 5_4:-24552190 | None:intergenic |
| CTTGCTATAGATTAATGCTT+TGG | 0.354568 | 5_4:-24555387 | None:intergenic |
| GGCTTTACGGATGAGAAGTT+TGG | 0.355912 | 5_4:-24552177 | None:intergenic |
| ACGGTTTCTTTCGTCTTTGC+CGG | 0.363859 | 5_4:+24552770 | Msa0845420:CDS |
| ATTGTGATGAAAGTCGATTC+AGG | 0.368774 | 5_4:+24555235 | Msa0845420:three_prime_UTR |
| GGGAATTAGCGATTCAATTC+GGG | 0.376776 | 5_4:+24552600 | Msa0845420:CDS |
| GGCGGCTATTTGTCTGATGA+TGG | 0.377217 | 5_4:+24553356 | Msa0845420:CDS |
| AGGGATATATGTACCTCTAT+TGG | 0.381981 | 5_4:-24553181 | None:intergenic |
| AGGGAATTAGCGATTCAATT+CGG | 0.383931 | 5_4:+24552599 | Msa0845420:CDS |
| AAGTTGAGGCGAGTCTGTTT+TGG | 0.386907 | 5_4:-24555141 | None:intergenic |
| TTACATCGCCTCCAACTTCT+GGG | 0.394287 | 5_4:-24555184 | None:intergenic |
| ATCGCAGAGGCGACGGAGTT+CGG | 0.401087 | 5_4:-24552201 | None:intergenic |
| TGCAAAAGCTATTATCTGTA+TGG | 0.415448 | 5_4:+24552354 | Msa0845420:CDS |
| AGCATTATCCCAACCTTTGT+TGG | 0.422062 | 5_4:-24555538 | None:intergenic |
| AATCTCGTGATTACGAGAAA+TGG | 0.422384 | 5_4:+24554974 | Msa0845420:CDS |
| TGTATTTATCCAACAAAGGT+TGG | 0.429800 | 5_4:+24555529 | Msa0845420:three_prime_UTR |
| GTATTTATCCAACAAAGGTT+GGG | 0.435161 | 5_4:+24555530 | Msa0845420:three_prime_UTR |
| ATTAAGCTGATTGAACTTTG+TGG | 0.437940 | 5_4:+24552965 | Msa0845420:CDS |
| ACATAGTCTTGAAGATGAAA+TGG | 0.441804 | 5_4:-24555597 | None:intergenic |
| TATAAAACAACGCATGAAGA+TGG | 0.450964 | 5_4:+24555274 | Msa0845420:three_prime_UTR |
| TCTTCTGCGGTGAAGCTTAG+TGG | 0.452173 | 5_4:+24552415 | Msa0845420:CDS |
| ACGGATGAGAAGTTTGGAAT+CGG | 0.483447 | 5_4:-24552171 | None:intergenic |
| AGCTTAGTGGAATGTCTGAT+AGG | 0.487219 | 5_4:+24552428 | Msa0845420:CDS |
| TTTATGTTCAAAGAAACATA+AGG | 0.489147 | 5_4:+24552851 | Msa0845420:CDS |
| TTGAGACCATCGCGAACAAA+CGG | 0.489708 | 5_4:-24552638 | None:intergenic |
| AAAGCAACAGCCATGAAAAC+CGG | 0.493551 | 5_4:-24552825 | None:intergenic |
| AGCTCCTGAAACCCAGAAGT+TGG | 0.495581 | 5_4:+24555173 | Msa0845420:CDS |
| GCTTAGTGGAATGTCTGATA+GGG | 0.500694 | 5_4:+24552429 | Msa0845420:CDS |
| AAAGAAGTGAAGACCAATAG+AGG | 0.500797 | 5_4:+24553168 | Msa0845420:CDS |
| GGTATTGTGAAGTGAATTGT+AGG | 0.501595 | 5_4:-24552464 | None:intergenic |
| GCGGCTTACAACGCCGATGA+TGG | 0.502301 | 5_4:-24552240 | None:intergenic |
| GAAATCGCTGCAACGAAGCT+TGG | 0.509168 | 5_4:+24552376 | Msa0845420:CDS |
| GCACTAGCACGACGAGCAGC+CGG | 0.518212 | 5_4:-24552789 | None:intergenic |
| GCGGCTATTTGTCTGATGAT+GGG | 0.527629 | 5_4:+24553357 | Msa0845420:CDS |
| AATTCACTTCACAATACCAT+TGG | 0.534895 | 5_4:+24552469 | Msa0845420:CDS |
| AAGTTGGAGGCGATGTAAGA+TGG | 0.537833 | 5_4:+24555189 | Msa0845420:exon |
| AATAAACAAGACAAGAAAGA+AGG | 0.548138 | 5_4:+24555018 | Msa0845420:CDS |
| ATAAAACAACGCATGAAGAT+GGG | 0.557501 | 5_4:+24555275 | Msa0845420:three_prime_UTR |
| AGTGGACATCGCAGAGGCGA+CGG | 0.558431 | 5_4:-24552208 | None:intergenic |
| TCCTGAAACCCAGAAGTTGG+AGG | 0.558960 | 5_4:+24555176 | Msa0845420:CDS |
| TAGGTTGAAGCTTGATGTGA+GGG | 0.559039 | 5_4:+24552580 | Msa0845420:intron |
| ATTATACCGTTTGTTCGCGA+TGG | 0.559940 | 5_4:+24552632 | Msa0845420:CDS |
| ATTAATTTACTTGACACCAA+TGG | 0.566547 | 5_4:-24552485 | None:intergenic |
| CACTTCGATTCCTCCATCAT+CGG | 0.569694 | 5_4:+24552227 | Msa0845420:CDS |
| CTTCTCTTATGTTGCTACGT+AGG | 0.573868 | 5_4:-24555304 | None:intergenic |
| TTTGTCTGATGATGGGGCAG+AGG | 0.577375 | 5_4:+24553364 | Msa0845420:CDS |
| GAGCTTCCTTGACGAAGTTG+AGG | 0.590042 | 5_4:-24555155 | None:intergenic |
| TTGTTTGTAGTTATAAGGAA+CGG | 0.597779 | 5_4:+24552751 | Msa0845420:intron |
| AGCAAAAGAAAAGCTGAGGA+TGG | 0.599986 | 5_4:+24553335 | Msa0845420:CDS |
| ACGTAGCAACATAAGAGAAG+TGG | 0.606604 | 5_4:+24555307 | Msa0845420:three_prime_UTR |
| ACCAAGCAAAAGAAAAGCTG+AGG | 0.616420 | 5_4:+24553331 | Msa0845420:CDS |
| CGGCTATTTGTCTGATGATG+GGG | 0.617490 | 5_4:+24553358 | Msa0845420:CDS |
| TTGGAGGCGATGTAAGATGG+TGG | 0.627242 | 5_4:+24555192 | Msa0845420:exon |
| CTTAGTGGAATGTCTGATAG+GGG | 0.629181 | 5_4:+24552430 | Msa0845420:CDS |
| GCTTACAACGCCGATGATGG+AGG | 0.635395 | 5_4:-24552237 | None:intergenic |
| AAAAGAAAAGCTGAGGATGG+CGG | 0.641473 | 5_4:+24553338 | Msa0845420:CDS |
| GACTCGCCTCAACTTCGTCA+AGG | 0.645066 | 5_4:+24555149 | Msa0845420:CDS |
| GCAGAGGCGACGGAGTTCGG+CGG | 0.647879 | 5_4:-24552198 | None:intergenic |
| CGATGATGGAGGAATCGAAG+TGG | 0.667995 | 5_4:-24552226 | None:intergenic |
| TTAGGTTGAAGCTTGATGTG+AGG | 0.671603 | 5_4:+24552579 | Msa0845420:intron |
| AATCGAAGTGGACATCGCAG+AGG | 0.711889 | 5_4:-24552214 | None:intergenic |
| GTGATGAAAGTCGATTCAGG+AGG | 0.739834 | 5_4:+24555238 | Msa0845420:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAAGAAAAAAAAAA+CGG | - | chr5_4:24552317-24552336 | None:intergenic | 10.0% |
| !!! | TGATTAATTATAATTTGTTT+TGG | + | chr5_4:24553419-24553438 | Msa0845420:intron | 10.0% |
| !! | TAAATTATTTGTAAAAAACA+AGG | + | chr5_4:24553453-24553472 | Msa0845420:intron | 10.0% |
| !!! | ATAATTTTAGAAAATTTAAC+AGG | - | chr5_4:24553632-24553651 | None:intergenic | 10.0% |
| !!! | TTAAATTTTCTAAAATTATG+TGG | + | chr5_4:24553633-24553652 | Msa0845420:intron | 10.0% |
| !!! | TAAATTTTCTAAAATTATGT+GGG | + | chr5_4:24553634-24553653 | Msa0845420:intron | 10.0% |
| !! | TTAGCAAAATATAAAATAAA+TGG | - | chr5_4:24553993-24554012 | None:intergenic | 10.0% |
| !!! | TTAAATTGATTTTCAATAAT+TGG | + | chr5_4:24554429-24554448 | Msa0845420:intron | 10.0% |
| !!! | TTTGTTTTGTTTTGTTTTTT+TGG | - | chr5_4:24552113-24552132 | None:intergenic | 15.0% |
| !! | AAAACAAAACAAAACAAAAA+TGG | + | chr5_4:24552115-24552134 | Msa0845420:exon | 15.0% |
| !! | TAGAAAAAAAAAACTGAAAA+CGG | - | chr5_4:24552291-24552310 | None:intergenic | 15.0% |
| !!! | TTTCTTTTCAATTTTGTTTT+AGG | + | chr5_4:24552324-24552343 | Msa0845420:intron | 15.0% |
| !!! | TTCTTTTCAATTTTGTTTTA+GGG | + | chr5_4:24552325-24552344 | Msa0845420:intron | 15.0% |
| !! | AATTTAATTGAATTGTGAAT+GGG | + | chr5_4:24553071-24553090 | Msa0845420:intron | 15.0% |
| !! | CAATACATAAAACTAAAAAA+GGG | - | chr5_4:24553203-24553222 | None:intergenic | 15.0% |
| !! | AATTATCATAATTAAGCTAT+TGG | - | chr5_4:24554598-24554617 | None:intergenic | 15.0% |
| !! | TTTATTTGAGAATTTCTATT+TGG | - | chr5_4:24554714-24554733 | None:intergenic | 15.0% |
| !! | ACTTTATTATTCATATGAAT+TGG | - | chr5_4:24554899-24554918 | None:intergenic | 15.0% |
| !! | TTAATGATGAATTTGTGTTT+AGG | + | chr5_4:24552561-24552580 | Msa0845420:intron | 20.0% |
| !! | TTTATGTTCAAAGAAACATA+AGG | + | chr5_4:24552851-24552870 | Msa0845420:CDS | 20.0% |
| !! | GAATTTAATTGAATTGTGAA+TGG | + | chr5_4:24553070-24553089 | Msa0845420:intron | 20.0% |
| !! | GCAATACATAAAACTAAAAA+AGG | - | chr5_4:24553204-24553223 | None:intergenic | 20.0% |
| !! | ATTTGTAAAAAACAAGGAAT+TGG | + | chr5_4:24553459-24553478 | Msa0845420:intron | 20.0% |
| !! | CAGATAATACAAAAAAATGT+GGG | - | chr5_4:24553748-24553767 | None:intergenic | 20.0% |
| !! | ACAGATAATACAAAAAAATG+TGG | - | chr5_4:24553749-24553768 | None:intergenic | 20.0% |
| !!! | CATTTTTTTGTATTATCTGT+TGG | + | chr5_4:24553749-24553768 | Msa0845420:intron | 20.0% |
| !!! | ATTGATGGTTTTAGTTTAAA+TGG | + | chr5_4:24554152-24554171 | Msa0845420:intron | 20.0% |
| !! | TATTATGAATACTCTATACT+TGG | - | chr5_4:24554456-24554475 | None:intergenic | 20.0% |
| !! | TAAGTAAAGAATGAATCATA+AGG | - | chr5_4:24554806-24554825 | None:intergenic | 20.0% |
| !!! | TGTTAACATTTTATGTATAG+TGG | + | chr5_4:24554868-24554887 | Msa0845420:intron | 20.0% |
| !!! | TTTTTTTATAACTTGAAACC+TGG | - | chr5_4:24554942-24554961 | None:intergenic | 20.0% |
| !!! | AGGTTTCAAGTTATAAAAAA+AGG | + | chr5_4:24554941-24554960 | Msa0845420:intron | 20.0% |
| !! | TTATAAAAAAAGGAAACAGA+TGG | + | chr5_4:24554951-24554970 | Msa0845420:CDS | 20.0% |
| !!! | AATTTTGTTAGTTGTCTTTT+GGG | + | chr5_4:24555358-24555377 | Msa0845420:three_prime_UTR | 20.0% |
| !!! | TACTTTTTATCATTGGAATT+TGG | + | chr5_4:24555427-24555446 | Msa0845420:three_prime_UTR | 20.0% |
| !!! | TTTTTGTATTTATCCAACAA+AGG | + | chr5_4:24555525-24555544 | Msa0845420:three_prime_UTR | 20.0% |
| ! | AATTGTAAGTAACGAAAAAG+CGG | - | chr5_4:24552262-24552281 | None:intergenic | 25.0% |
| ! | ATTAATTTACTTGACACCAA+TGG | - | chr5_4:24552488-24552507 | None:intergenic | 25.0% |
| !!! | TCTTGTTGTTTGTAGTTATA+AGG | + | chr5_4:24552746-24552765 | Msa0845420:intron | 25.0% |
| ! | TTGTTTGTAGTTATAAGGAA+CGG | + | chr5_4:24552751-24552770 | Msa0845420:intron | 25.0% |
| ! | GATTGTATATTGTAATGACA+TGG | + | chr5_4:24552907-24552926 | Msa0845420:intron | 25.0% |
| ! | AATATGAAATCTGGTCTATA+AGG | - | chr5_4:24553528-24553547 | None:intergenic | 25.0% |
| ! | GGTAAAATCAATATGAAATC+TGG | - | chr5_4:24553537-24553556 | None:intergenic | 25.0% |
| ! | AAAAAATGTGGGATTTAAGA+CGG | - | chr5_4:24553737-24553756 | None:intergenic | 25.0% |
| ! | ATTAAGGAAACTACAAATGA+AGG | + | chr5_4:24553790-24553809 | Msa0845420:intron | 25.0% |
| !!! | TAAAACATCGACTTTACATA+TGG | + | chr5_4:24553889-24553908 | Msa0845420:intron | 25.0% |
| ! | GTCATCAAACAATTTCTAAA+AGG | - | chr5_4:24553944-24553963 | None:intergenic | 25.0% |
| ! | TAAAATAAATGGACCATCTT+GGG | - | chr5_4:24553982-24554001 | None:intergenic | 25.0% |
| ! | ATAAAATAAATGGACCATCT+TGG | - | chr5_4:24553983-24554002 | None:intergenic | 25.0% |
| ! | ACTAAAACCATCAATTAGTA+AGG | - | chr5_4:24554147-24554166 | None:intergenic | 25.0% |
| !!! | CTCCTTGATACATTTTTTTA+TGG | + | chr5_4:24554350-24554369 | Msa0845420:intron | 25.0% |
| ! | AGCCATAAAAAAATGTATCA+AGG | - | chr5_4:24554355-24554374 | None:intergenic | 25.0% |
| !!! | TTGATACATTTTTTTATGGC+TGG | + | chr5_4:24554354-24554373 | Msa0845420:intron | 25.0% |
| !! | TTCTGTTGAACAATTTTGTA+AGG | + | chr5_4:24554403-24554422 | Msa0845420:intron | 25.0% |
| ! | ATGATAATTTCAATTCAGAC+TGG | + | chr5_4:24554609-24554628 | Msa0845420:intron | 25.0% |
| ! | TGATAATTTCAATTCAGACT+GGG | + | chr5_4:24554610-24554629 | Msa0845420:intron | 25.0% |
| ! | TTCAGTTTAAAAAGTGATGA+TGG | + | chr5_4:24554745-24554764 | Msa0845420:intron | 25.0% |
| ! | TCAGTTTAAAAAGTGATGAT+GGG | + | chr5_4:24554746-24554765 | Msa0845420:intron | 25.0% |
| ! | AATCATAAGGTAGAATATTG+TGG | - | chr5_4:24554793-24554812 | None:intergenic | 25.0% |
| ! | CATAAAACTGTAAGAATACA+AGG | - | chr5_4:24554850-24554869 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTGTCTTGTTTAT+TGG | - | chr5_4:24555019-24555038 | None:intergenic | 25.0% |
| ! | AATAAACAAGACAAGAAAGA+AGG | + | chr5_4:24555018-24555037 | Msa0845420:CDS | 25.0% |
| !! | CAATTTTGTTAGTTGTCTTT+TGG | + | chr5_4:24555357-24555376 | Msa0845420:three_prime_UTR | 25.0% |
| !! | ATTTTGTTAGTTGTCTTTTG+GGG | + | chr5_4:24555359-24555378 | Msa0845420:three_prime_UTR | 25.0% |
| !!! | AGACTGTTACTTTTTATCAT+TGG | + | chr5_4:24555420-24555439 | Msa0845420:three_prime_UTR | 25.0% |
| !! | TTCTACCTGATTTTGTTAAA+AGG | - | chr5_4:24555565-24555584 | None:intergenic | 25.0% |
| !! | TTTTTGGAAGTGAATGAGAT+TGG | - | chr5_4:24552097-24552116 | None:intergenic | 30.0% |
| TGCAAAAGCTATTATCTGTA+TGG | + | chr5_4:24552354-24552373 | Msa0845420:CDS | 30.0% | |
| AATTCACTTCACAATACCAT+TGG | + | chr5_4:24552469-24552488 | Msa0845420:CDS | 30.0% | |
| ! | ATGTGAATGTGTTGATGAAA+TGG | + | chr5_4:24552721-24552740 | Msa0845420:intron | 30.0% |
| ATTAAGCTGATTGAACTTTG+TGG | + | chr5_4:24552965-24552984 | Msa0845420:CDS | 30.0% | |
| CAAAATGTGACGAGTTTATT+AGG | + | chr5_4:24553029-24553048 | Msa0845420:intron | 30.0% | |
| !! | TATTGGTCTTCACTTCTTTA+GGG | - | chr5_4:24553167-24553186 | None:intergenic | 30.0% |
| TTCTGATTCTTTGCTTCTTT+GGG | + | chr5_4:24553289-24553308 | Msa0845420:intron | 30.0% | |
| !!! | TCATCAGTGTTGTTTTTTAC+TGG | + | chr5_4:24553488-24553507 | Msa0845420:intron | 30.0% |
| !!! | CATCAGTGTTGTTTTTTACT+GGG | + | chr5_4:24553489-24553508 | Msa0845420:intron | 30.0% |
| GCAATAAAAGAGTTCAACTT+GGG | - | chr5_4:24553558-24553577 | None:intergenic | 30.0% | |
| !! | CAAGTTGAACTCTTTTATTG+CGG | + | chr5_4:24553557-24553576 | Msa0845420:intron | 30.0% |
| ! | AAAAATGTGGGATTTAAGAC+GGG | - | chr5_4:24553736-24553755 | None:intergenic | 30.0% |
| GGTTAATGTGTAGTGATAAT+AGG | + | chr5_4:24553811-24553830 | Msa0845420:intron | 30.0% | |
| ! | TAATGTGAAATCTGAAACAC+AGG | + | chr5_4:24553834-24553853 | Msa0845420:intron | 30.0% |
| ! | AATGTGAAATCTGAAACACA+GGG | + | chr5_4:24553835-24553854 | Msa0845420:intron | 30.0% |
| ! | ATGTTTTACTCATCGTATTC+TGG | - | chr5_4:24553877-24553896 | None:intergenic | 30.0% |
| ! | TGACAATTGATTCTCTTTGA+AGG | + | chr5_4:24554497-24554516 | Msa0845420:intron | 30.0% |
| ! | TTCTCTTTGAAGGTTATACT+AGG | + | chr5_4:24554507-24554526 | Msa0845420:intron | 30.0% |
| GAAAAAACCTATTGCAGAAT+TGG | + | chr5_4:24554632-24554651 | Msa0845420:intron | 30.0% | |
| TACTTATCCAATTCTGCAAT+AGG | - | chr5_4:24554642-24554661 | None:intergenic | 30.0% | |
| ! | CAGTTTAAAAAGTGATGATG+GGG | + | chr5_4:24554747-24554766 | Msa0845420:intron | 30.0% |
| TCATTTGTCTGTATATATCC+AGG | + | chr5_4:24554921-24554940 | Msa0845420:intron | 30.0% | |
| !! | TGTCTTGTTTATTGGATGTA+AGG | - | chr5_4:24555011-24555030 | None:intergenic | 30.0% |
| ATGTTAACTGTCTAGATCTT+TGG | - | chr5_4:24555085-24555104 | None:intergenic | 30.0% | |
| TATAAAACAACGCATGAAGA+TGG | + | chr5_4:24555274-24555293 | Msa0845420:three_prime_UTR | 30.0% | |
| ATAAAACAACGCATGAAGAT+GGG | + | chr5_4:24555275-24555294 | Msa0845420:three_prime_UTR | 30.0% | |
| ! | CTTGCTATAGATTAATGCTT+TGG | - | chr5_4:24555390-24555409 | None:intergenic | 30.0% |
| TGTATTTATCCAACAAAGGT+TGG | + | chr5_4:24555529-24555548 | Msa0845420:three_prime_UTR | 30.0% | |
| GTATTTATCCAACAAAGGTT+GGG | + | chr5_4:24555530-24555549 | Msa0845420:three_prime_UTR | 30.0% | |
| ! | TGCTACCTTTTAACAAAATC+AGG | + | chr5_4:24555557-24555576 | Msa0845420:three_prime_UTR | 30.0% |
| ! | ACATAGTCTTGAAGATGAAA+TGG | - | chr5_4:24555600-24555619 | None:intergenic | 30.0% |
| GGTATTGTGAAGTGAATTGT+AGG | - | chr5_4:24552467-24552486 | None:intergenic | 35.0% | |
| AGGGAATTAGCGATTCAATT+CGG | + | chr5_4:24552599-24552618 | Msa0845420:CDS | 35.0% | |
| TGACGAGTTTATTAGGTTTG+TGG | + | chr5_4:24553036-24553055 | Msa0845420:intron | 35.0% | |
| GACGAGTTTATTAGGTTTGT+GGG | + | chr5_4:24553037-24553056 | Msa0845420:intron | 35.0% | |
| ! | ACTTGTGCCATGATGTTTTT+GGG | + | chr5_4:24553121-24553140 | Msa0845420:CDS | 35.0% |
| !! | CTATTGGTCTTCACTTCTTT+AGG | - | chr5_4:24553168-24553187 | None:intergenic | 35.0% |
| AAAGAAGTGAAGACCAATAG+AGG | + | chr5_4:24553168-24553187 | Msa0845420:CDS | 35.0% | |
| AGGGATATATGTACCTCTAT+TGG | - | chr5_4:24553184-24553203 | None:intergenic | 35.0% | |
| CTTCTGATTCTTTGCTTCTT+TGG | + | chr5_4:24553288-24553307 | Msa0845420:intron | 35.0% | |
| CGCAATAAAAGAGTTCAACT+TGG | - | chr5_4:24553559-24553578 | None:intergenic | 35.0% | |
| TGTCTACTGTACTGTATTGT+TGG | + | chr5_4:24553600-24553619 | Msa0845420:intron | 35.0% | |
| CCAACAGATAATACAAGACA+TGG | - | chr5_4:24553667-24553686 | None:intergenic | 35.0% | |
| CCATGTCTTGTATTATCTGT+TGG | + | chr5_4:24553664-24553683 | Msa0845420:intron | 35.0% | |
| ! | AAAATGTGGGATTTAAGACG+GGG | - | chr5_4:24553735-24553754 | None:intergenic | 35.0% |
| TATCTGTTGGATCCATACAT+TGG | + | chr5_4:24553762-24553781 | Msa0845420:intron | 35.0% | |
| CCTTAATCAAAGCCAATGTA+TGG | - | chr5_4:24553777-24553796 | None:intergenic | 35.0% | |
| !! | CCATACATTGGCTTTGATTA+AGG | + | chr5_4:24553774-24553793 | Msa0845420:intron | 35.0% |
| TGTCATCAATGCAAAGTTGA+CGG | + | chr5_4:24554021-24554040 | Msa0845420:intron | 35.0% | |
| TCATAAGGCAAAGTTGCAAA+GGG | - | chr5_4:24554065-24554084 | None:intergenic | 35.0% | |
| TTCATAAGGCAAAGTTGCAA+AGG | - | chr5_4:24554066-24554085 | None:intergenic | 35.0% | |
| AACTTTGCCTTATGAAACAC+CGG | + | chr5_4:24554070-24554089 | Msa0845420:intron | 35.0% | |
| CTCATCAATCTAATAGACAC+CGG | - | chr5_4:24554092-24554111 | None:intergenic | 35.0% | |
| GTCACTAAAATGTTGAGACT+GGG | - | chr5_4:24554481-24554500 | None:intergenic | 35.0% | |
| TGTCACTAAAATGTTGAGAC+TGG | - | chr5_4:24554482-24554501 | None:intergenic | 35.0% | |
| TCTTTGTAGTGACCTCTATT+TGG | + | chr5_4:24554557-24554576 | Msa0845420:intron | 35.0% | |
| AAGGCAACAGAACAACATAA+TGG | - | chr5_4:24554831-24554850 | None:intergenic | 35.0% | |
| AATCTCGTGATTACGAGAAA+TGG | + | chr5_4:24554974-24554993 | Msa0845420:CDS | 35.0% | |
| ! | ATTGTGATGAAAGTCGATTC+AGG | + | chr5_4:24555235-24555254 | Msa0845420:three_prime_UTR | 35.0% |
| ! | ACGGATGAGAAGTTTGGAAT+CGG | - | chr5_4:24552174-24552193 | None:intergenic | 40.0% |
| ! | TCTTTTCGATCGATCTTCTG+CGG | + | chr5_4:24552402-24552421 | Msa0845420:CDS | 40.0% |
| AGCTTAGTGGAATGTCTGAT+AGG | + | chr5_4:24552428-24552447 | Msa0845420:CDS | 40.0% | |
| GCTTAGTGGAATGTCTGATA+GGG | + | chr5_4:24552429-24552448 | Msa0845420:CDS | 40.0% | |
| CTTAGTGGAATGTCTGATAG+GGG | + | chr5_4:24552430-24552449 | Msa0845420:CDS | 40.0% | |
| !! | TTAGGTTGAAGCTTGATGTG+AGG | + | chr5_4:24552579-24552598 | Msa0845420:intron | 40.0% |
| ! | TAGGTTGAAGCTTGATGTGA+GGG | + | chr5_4:24552580-24552599 | Msa0845420:intron | 40.0% |
| GGGAATTAGCGATTCAATTC+GGG | + | chr5_4:24552600-24552619 | Msa0845420:CDS | 40.0% | |
| ATTATACCGTTTGTTCGCGA+TGG | + | chr5_4:24552632-24552651 | Msa0845420:CDS | 40.0% | |
| !!! | TAGTGCTGATTTTACTCGTC+CGG | + | chr5_4:24552806-24552825 | Msa0845420:CDS | 40.0% |
| ! | TTTTACTCGTCCGGTTTTCA+TGG | + | chr5_4:24552815-24552834 | Msa0845420:CDS | 40.0% |
| AAAGCAACAGCCATGAAAAC+CGG | - | chr5_4:24552828-24552847 | None:intergenic | 40.0% | |
| GAGTTTATTAGGTTTGTGGG+TGG | + | chr5_4:24553040-24553059 | Msa0845420:intron | 40.0% | |
| ! | GACTTGTGCCATGATGTTTT+TGG | + | chr5_4:24553120-24553139 | Msa0845420:CDS | 40.0% |
| !! | CTTGTGCCATGATGTTTTTG+GGG | + | chr5_4:24553122-24553141 | Msa0845420:CDS | 40.0% |
| TAGCAACCCCAAAAACATCA+TGG | - | chr5_4:24553131-24553150 | None:intergenic | 40.0% | |
| ACCAAGCAAAAGAAAAGCTG+AGG | + | chr5_4:24553331-24553350 | Msa0845420:CDS | 40.0% | |
| ! | TCCTCAGCTTTTCTTTTGCT+TGG | - | chr5_4:24553335-24553354 | None:intergenic | 40.0% |
| AGCAAAAGAAAAGCTGAGGA+TGG | + | chr5_4:24553335-24553354 | Msa0845420:CDS | 40.0% | |
| AAAAGAAAAGCTGAGGATGG+CGG | + | chr5_4:24553338-24553357 | Msa0845420:CDS | 40.0% | |
| ! | TTGCGGACAGACTAATTTTG+TGG | + | chr5_4:24553574-24553593 | Msa0845420:intron | 40.0% |
| CTACTGTACTGTATTGTTGG+AGG | + | chr5_4:24553603-24553622 | Msa0845420:intron | 40.0% | |
| ! | AATCTGAAACACAGGGTTTG+CGG | + | chr5_4:24553842-24553861 | Msa0845420:intron | 40.0% |
| ATAGACACCGGTGTTTCATA+AGG | - | chr5_4:24554080-24554099 | None:intergenic | 40.0% | |
| GGCACATCCTTACTAATTGA+TGG | + | chr5_4:24554137-24554156 | Msa0845420:intron | 40.0% | |
| ! | GTTGCTGCTTGTGTTATGAT+AGG | + | chr5_4:24554272-24554291 | Msa0845420:intron | 40.0% |
| !!! | GTCTGTTTTGGTTTCTTGCT+GGG | - | chr5_4:24555132-24555151 | None:intergenic | 40.0% |
| !!! | AGTCTGTTTTGGTTTCTTGC+TGG | - | chr5_4:24555133-24555152 | None:intergenic | 40.0% |
| CTTCTCTTATGTTGCTACGT+AGG | - | chr5_4:24555307-24555326 | None:intergenic | 40.0% | |
| ACGTAGCAACATAAGAGAAG+TGG | + | chr5_4:24555307-24555326 | Msa0845420:three_prime_UTR | 40.0% | |
| AGCATTATCCCAACCTTTGT+TGG | - | chr5_4:24555541-24555560 | None:intergenic | 40.0% | |
| GGCTTTACGGATGAGAAGTT+TGG | - | chr5_4:24552180-24552199 | None:intergenic | 45.0% | |
| CACTTCGATTCCTCCATCAT+CGG | + | chr5_4:24552227-24552246 | Msa0845420:CDS | 45.0% | |
| CGATTCAATTCGGGTGTGTT+CGG | + | chr5_4:24552609-24552628 | Msa0845420:CDS | 45.0% | |
| TTGAGACCATCGCGAACAAA+CGG | - | chr5_4:24552641-24552660 | None:intergenic | 45.0% | |
| ACGGTTTCTTTCGTCTTTGC+CGG | + | chr5_4:24552770-24552789 | Msa0845420:CDS | 45.0% | |
| ! | GAATTGTGAATGGGTGTTGC+AGG | + | chr5_4:24553080-24553099 | Msa0845420:intron | 45.0% |
| GCGGCTATTTGTCTGATGAT+GGG | + | chr5_4:24553357-24553376 | Msa0845420:CDS | 45.0% | |
| ! | CGGCTATTTGTCTGATGATG+GGG | + | chr5_4:24553358-24553377 | Msa0845420:CDS | 45.0% |
| ! | GATTTAAGACGGGGCAACAA+GGG | - | chr5_4:24553726-24553745 | None:intergenic | 45.0% |
| TCTTGGGTAATGTTGCTGTC+TGG | - | chr5_4:24553966-24553985 | None:intergenic | 45.0% | |
| GACAGCAACATTACCCAAGA+TGG | + | chr5_4:24553966-24553985 | Msa0845420:intron | 45.0% | |
| TGTAGTGACCTCTATTTGGC+AGG | + | chr5_4:24554561-24554580 | Msa0845420:intron | 45.0% | |
| GTAGTGACCTCTATTTGGCA+GGG | + | chr5_4:24554562-24554581 | Msa0845420:intron | 45.0% | |
| ACTATGACCCTGCCAAATAG+AGG | - | chr5_4:24554572-24554591 | None:intergenic | 45.0% | |
| ! | AAGTTGAGGCGAGTCTGTTT+TGG | - | chr5_4:24555144-24555163 | None:intergenic | 45.0% |
| TTACATCGCCTCCAACTTCT+GGG | - | chr5_4:24555187-24555206 | None:intergenic | 45.0% | |
| AAGTTGGAGGCGATGTAAGA+TGG | + | chr5_4:24555189-24555208 | Msa0845420:exon | 45.0% | |
| ! | GTGATGAAAGTCGATTCAGG+AGG | + | chr5_4:24555238-24555257 | Msa0845420:three_prime_UTR | 45.0% |
| !!! | ATTTTTAATTTTTAATTGTT+TGG | + | chr5_4:24552526-24552545 | Msa0845420:intron | 5.0% |
| AATCGAAGTGGACATCGCAG+AGG | - | chr5_4:24552217-24552236 | None:intergenic | 50.0% | |
| !! | CGATGATGGAGGAATCGAAG+TGG | - | chr5_4:24552229-24552248 | None:intergenic | 50.0% |
| GAAATCGCTGCAACGAAGCT+TGG | + | chr5_4:24552376-24552395 | Msa0845420:CDS | 50.0% | |
| TCTTCTGCGGTGAAGCTTAG+TGG | + | chr5_4:24552415-24552434 | Msa0845420:CDS | 50.0% | |
| GGCGGCTATTTGTCTGATGA+TGG | + | chr5_4:24553356-24553375 | Msa0845420:CDS | 50.0% | |
| !! | TTTGTCTGATGATGGGGCAG+AGG | + | chr5_4:24553364-24553383 | Msa0845420:CDS | 50.0% |
| !! | TGATGGGGCAGAGGTATCAA+TGG | + | chr5_4:24553373-24553392 | Msa0845420:intron | 50.0% |
| ! | GGATTTAAGACGGGGCAACA+AGG | - | chr5_4:24553727-24553746 | None:intergenic | 50.0% |
| ! | TGATGTTCCGTGCACTGATG+TGG | + | chr5_4:24554116-24554135 | Msa0845420:intron | 50.0% |
| CTAGATCTTTGGCTGAGACG+TGG | - | chr5_4:24555074-24555093 | None:intergenic | 50.0% | |
| GAGCTTCCTTGACGAAGTTG+AGG | - | chr5_4:24555158-24555177 | None:intergenic | 50.0% | |
| AGCTCCTGAAACCCAGAAGT+TGG | + | chr5_4:24555173-24555192 | Msa0845420:CDS | 50.0% | |
| TCCTGAAACCCAGAAGTTGG+AGG | + | chr5_4:24555176-24555195 | Msa0845420:CDS | 50.0% | |
| CTTACATCGCCTCCAACTTC+TGG | - | chr5_4:24555188-24555207 | None:intergenic | 50.0% | |
| TTGGAGGCGATGTAAGATGG+TGG | + | chr5_4:24555192-24555211 | Msa0845420:exon | 50.0% | |
| ! | GCTTACAACGCCGATGATGG+AGG | - | chr5_4:24552240-24552259 | None:intergenic | 55.0% |
| TAAGACGGGGCAACAAGGGA+TGG | - | chr5_4:24553722-24553741 | None:intergenic | 55.0% | |
| GGATGTGCCACATCAGTGCA+CGG | - | chr5_4:24554126-24554145 | None:intergenic | 55.0% | |
| GACTCGCCTCAACTTCGTCA+AGG | + | chr5_4:24555149-24555168 | Msa0845420:CDS | 55.0% | |
| GCCTCCAACTTCTGGGTTTC+AGG | - | chr5_4:24555180-24555199 | None:intergenic | 55.0% | |
| GACGGAGTTCGGCGGCTTTA+CGG | - | chr5_4:24552193-24552212 | None:intergenic | 60.0% | |
| ATCGCAGAGGCGACGGAGTT+CGG | - | chr5_4:24552204-24552223 | None:intergenic | 60.0% | |
| AGTGGACATCGCAGAGGCGA+CGG | - | chr5_4:24552211-24552230 | None:intergenic | 60.0% | |
| GCGGCTTACAACGCCGATGA+TGG | - | chr5_4:24552243-24552262 | None:intergenic | 60.0% | |
| GCACTAGCACGACGAGCAGC+CGG | - | chr5_4:24552792-24552811 | None:intergenic | 65.0% | |
| GCAGAGGCGACGGAGTTCGG+CGG | - | chr5_4:24552201-24552220 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 24552092 | 24555636 | 24552092 | ID=Msa0845420;Name=Msa0845420 |
| chr5_4 | mRNA | 24552092 | 24555636 | 24552092 | ID=Msa0845420-mRNA-1;Parent=Msa0845420;Name=Msa0845420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=42|1|1|1|1|1|9|430|287 |
| chr5_4 | exon | 24552092 | 24552253 | 24552092 | ID=Msa0845420-mRNA-1:exon:9851;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24552346 | 24552497 | 24552346 | ID=Msa0845420-mRNA-1:exon:9852;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24552583 | 24552663 | 24552583 | ID=Msa0845420-mRNA-1:exon:9853;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24552761 | 24552872 | 24552761 | ID=Msa0845420-mRNA-1:exon:9854;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24552950 | 24553012 | 24552950 | ID=Msa0845420-mRNA-1:exon:9855;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24553102 | 24553189 | 24553102 | ID=Msa0845420-mRNA-1:exon:9856;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24553315 | 24553385 | 24553315 | ID=Msa0845420-mRNA-1:exon:9857;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24554943 | 24555039 | 24554943 | ID=Msa0845420-mRNA-1:exon:9858;Parent=Msa0845420-mRNA-1 |
| chr5_4 | exon | 24555127 | 24555636 | 24555127 | ID=Msa0845420-mRNA-1:exon:9859;Parent=Msa0845420-mRNA-1 |
| chr5_4 | five_prime_UTR | 24552092 | 24552133 | 24552092 | ID=Msa0845420-mRNA-1:five_prime_utr;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24552134 | 24552253 | 24552134 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24552346 | 24552497 | 24552346 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24552583 | 24552663 | 24552583 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24552761 | 24552872 | 24552761 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24552950 | 24553012 | 24552950 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24553102 | 24553189 | 24553102 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24553315 | 24553385 | 24553315 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24554943 | 24555039 | 24554943 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | CDS | 24555127 | 24555206 | 24555127 | ID=Msa0845420-mRNA-1:cds;Parent=Msa0845420-mRNA-1 |
| chr5_4 | three_prime_UTR | 24555207 | 24555636 | 24555207 | ID=Msa0845420-mRNA-1:three_prime_utr;Parent=Msa0845420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
