Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851060 | XP_003615238.1 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 7.98e-94 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851060 | sp|Q8VXX9|BETL1_ARATH | 67.153 | 137 | 40 | 2 | 1 | 132 | 1 | 137 | 3.68e-66 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851060 | G7KBG1 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 3.81e-94 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0851060 | -0.801065 | 1.073471e-48 | -8.615850e-47 |
| Msa0038350 | Msa0851060 | 0.812898 | 3.363255e-51 | -8.615850e-47 |
| Msa0101320 | Msa0851060 | 0.829973 | 3.813495e-55 | -8.615850e-47 |
| Msa0101810 | Msa0851060 | 0.804345 | 2.259148e-49 | -8.615850e-47 |
| Msa0629370 | Msa0851060 | -0.803399 | 3.551905e-49 | -8.615850e-47 |
| Msa0756630 | Msa0851060 | 0.806032 | 1.001456e-49 | -8.615850e-47 |
| Msa0810480 | Msa0851060 | -0.800963 | 1.126215e-48 | -8.615850e-47 |
| Msa0827620 | Msa0851060 | 0.992606 | 2.610766e-194 | -8.615850e-47 |
| Msa0157290 | Msa0851060 | -0.801157 | 1.027689e-48 | -8.615850e-47 |
| Msa0196130 | Msa0851060 | 0.810696 | 1.013770e-50 | -8.615850e-47 |
| Msa0197230 | Msa0851060 | -0.805515 | 1.286373e-49 | -8.615850e-47 |
| Msa0480980 | Msa0851060 | -0.802525 | 5.382654e-49 | -8.615850e-47 |
| Msa0254290 | Msa0851060 | -0.810281 | 1.246177e-50 | -8.615850e-47 |
| Msa0289890 | Msa0851060 | -0.805197 | 1.499254e-49 | -8.615850e-47 |
| Msa0490390 | Msa0851060 | -0.800605 | 1.332359e-48 | -8.615850e-47 |
| Msa0526640 | Msa0851060 | 0.818946 | 1.503497e-52 | -8.615850e-47 |
| Msa0574890 | Msa0851060 | -0.803880 | 2.822149e-49 | -8.615850e-47 |
| Msa0851060 | Msa1007610 | 0.825405 | 4.771888e-54 | -8.615850e-47 |
| Msa0851060 | Msa1008490 | -0.800797 | 1.217793e-48 | -8.615850e-47 |
| Msa0851060 | Msa1055690 | -0.808580 | 2.888783e-50 | -8.615850e-47 |
| Msa0851060 | Msa1077390 | -0.819688 | 1.018344e-52 | -8.615850e-47 |
| Msa0851060 | Msa1221560 | -0.814620 | 1.404406e-51 | -8.615850e-47 |
| Msa0851060 | Msa1228210 | -0.805136 | 1.544129e-49 | -8.615850e-47 |
| Msa0851060 | Msa1335860 | -0.806903 | 6.562636e-50 | -8.615850e-47 |
| Msa0851060 | Msa1384120 | 0.802920 | 4.461478e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851060 | MtrunA17_Chr5g0427101 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 7.34e-98 | 276 |
| Msa0851060 | MtrunA17_Chr3g0132601 | 75.758 | 132 | 30 | 2 | 3 | 132 | 2 | 133 | 1.14e-70 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0851060 | AT4G14600.1 | 67.153 | 137 | 40 | 2 | 1 | 132 | 1 | 137 | 3.74e-67 | 199 |
| Msa0851060 | AT1G29060.1 | 64.925 | 134 | 45 | 1 | 1 | 132 | 1 | 134 | 1.03e-56 | 173 |
| Msa0851060 | AT1G29060.2 | 66.667 | 90 | 30 | 0 | 43 | 132 | 4 | 93 | 7.77e-37 | 121 |
Find 49 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCAATGACAAACAATT+TGG | 0.215739 | 5_4:+41050860 | None:intergenic |
| GTTTCTTTGTGGTTTACTTT+TGG | 0.257279 | 5_4:-41048602 | Msa0851060:CDS |
| GGTTTCATTTCTTCCAATTA+TGG | 0.264091 | 5_4:-41050738 | Msa0851060:exon |
| TGGGAATTGGCGGCCATAAT+TGG | 0.272560 | 5_4:+41050725 | None:intergenic |
| TGCTCTTGTTCAATCTTCTT+AGG | 0.276292 | 5_4:+41048679 | None:intergenic |
| TGCTTTAATTTGTTTCTTTG+TGG | 0.284943 | 5_4:-41048613 | Msa0851060:CDS |
| TAACAGTGTCGAATTGAAAA+TGG | 0.286669 | 5_4:+41050762 | None:intergenic |
| GATTAACCAACAAGTCAATT+TGG | 0.290646 | 5_4:-41050839 | Msa0851060:five_prime_UTR |
| ATTGTTATTGAGTGAGTATA+TGG | 0.314893 | 5_4:-41048433 | Msa0851060:three_prime_UTR |
| AACAAATAACATGAACAATA+TGG | 0.361569 | 5_4:+41048637 | None:intergenic |
| GTACAGGTTGCTGAGGAGAT+AGG | 0.380028 | 5_4:-41049167 | Msa0851060:intron |
| CACAGAGCTGCTTCTTCTTA+CGG | 0.391375 | 5_4:-41050704 | Msa0851060:CDS |
| ATCGGAGGCCGCACCGGGTC+GGG | 0.399280 | 5_4:+41050552 | None:intergenic |
| ACAGCAAATGACAATGATAA+AGG | 0.408664 | 5_4:-41048724 | Msa0851060:intron |
| AGAAGCAGCTCTGTGGGAAT+TGG | 0.410252 | 5_4:+41050712 | None:intergenic |
| ATCTCATCGGAGGCCGCACC+GGG | 0.429967 | 5_4:+41050547 | None:intergenic |
| GATCTCATCGGAGGCCGCAC+CGG | 0.441770 | 5_4:+41050546 | None:intergenic |
| CCATGGGATCAATACGCAAT+TGG | 0.445697 | 5_4:+41050524 | None:intergenic |
| GCGCTGTCCCTTTCCGATCA+AGG | 0.448825 | 5_4:-41050679 | Msa0851060:intron |
| CAATATGGTTCGAACCACTT+TGG | 0.455603 | 5_4:+41048652 | None:intergenic |
| TGTTGACCAAATTGACTTGT+TGG | 0.457375 | 5_4:+41050833 | None:intergenic |
| AGCAGCTCTGTGGGAATTGG+CGG | 0.461854 | 5_4:+41050715 | None:intergenic |
| CATCGGAGGCCGCACCGGGT+CGG | 0.476186 | 5_4:+41050551 | None:intergenic |
| AGAGATACCTTGATCGGAAA+GGG | 0.490033 | 5_4:+41050672 | None:intergenic |
| GCGTATTGATCCCATGGACT+TGG | 0.495420 | 5_4:-41050518 | Msa0851060:CDS |
| GAGTTCATCGTCCAAGTCCA+TGG | 0.506585 | 5_4:+41050507 | None:intergenic |
| TACAGGTTGCTGAGGAGATA+GGG | 0.518350 | 5_4:-41049166 | Msa0851060:intron |
| GTATCTTACAACCAGGGAGC+TGG | 0.525238 | 5_4:+41048541 | None:intergenic |
| ATCAATGACAAACAATTTGG+AGG | 0.531633 | 5_4:+41050863 | None:intergenic |
| CCAATTGCGTATTGATCCCA+TGG | 0.542939 | 5_4:-41050524 | Msa0851060:CDS |
| AGAATTTAAAGCCAGCTCCC+TGG | 0.550454 | 5_4:-41048552 | Msa0851060:three_prime_UTR |
| ACAATGATAAAGGCTCAAGC+TGG | 0.557678 | 5_4:-41048714 | Msa0851060:CDS |
| TAGAGATACCTTGATCGGAA+AGG | 0.570498 | 5_4:+41050671 | None:intergenic |
| TCAATGACAAACAATTTGGA+GGG | 0.580801 | 5_4:+41050864 | None:intergenic |
| AGTTCATCGTCCAAGTCCAT+GGG | 0.585829 | 5_4:+41050508 | None:intergenic |
| GTAAGAAGAAGCAGCTCTGT+GGG | 0.596400 | 5_4:+41050706 | None:intergenic |
| ATGAGTCGTATCTTACAACC+AGG | 0.599889 | 5_4:+41048534 | None:intergenic |
| GACTTGGACGATGAACTCAC+TGG | 0.600598 | 5_4:-41050502 | Msa0851060:CDS |
| AACAAGAGCATCATCCAAAG+TGG | 0.604677 | 5_4:-41048666 | Msa0851060:CDS |
| GTCTTCATACCCAAGTCAGA+AGG | 0.616448 | 5_4:-41050480 | Msa0851060:CDS |
| AGAGATAGAGATACCTTGAT+CGG | 0.625604 | 5_4:+41050666 | None:intergenic |
| AATACGCAATTGGATCTCAT+CGG | 0.630316 | 5_4:+41050534 | None:intergenic |
| AGTTCTGGTACAGGTTGCTG+AGG | 0.633639 | 5_4:-41049174 | Msa0851060:intron |
| CGTAAGAAGAAGCAGCTCTG+TGG | 0.635507 | 5_4:+41050705 | None:intergenic |
| ACTTAGTACCCGACCCGGTG+CGG | 0.648119 | 5_4:-41050560 | Msa0851060:CDS |
| ACGCAATTGGATCTCATCGG+AGG | 0.679188 | 5_4:+41050537 | None:intergenic |
| AGAGCTGCTTCTTCTTACGG+CGG | 0.688668 | 5_4:-41050701 | Msa0851060:CDS |
| GATGGACTTAGTACCCGACC+CGG | 0.732292 | 5_4:-41050565 | Msa0851060:CDS |
| TGAGTCGTATCTTACAACCA+GGG | 0.738167 | 5_4:+41048535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTATTTTATTATACAATT+AGG | - | chr5_4:41050360-41050379 | Msa0851060:intron | 10.0% |
| !!! | TATAACTATCTACAATTTTT+AGG | - | chr5_4:41049538-41049557 | Msa0851060:intron | 15.0% |
| !!! | TAAATATTATTTTCTGGAAT+GGG | + | chr5_4:41049689-41049708 | None:intergenic | 15.0% |
| !!! | TTCTACTAAATATTATTTTC+TGG | + | chr5_4:41049695-41049714 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATTGCAAATTA+TGG | - | chr5_4:41049772-41049791 | Msa0851060:intron | 15.0% |
| !!! | TCAAGTTTTCAAACAAAAAA+AGG | + | chr5_4:41048990-41049009 | None:intergenic | 20.0% |
| !!! | GTTTTACTATGACTTTAAAT+AGG | + | chr5_4:41049070-41049089 | None:intergenic | 20.0% |
| !!! | AACTTTAAAAAGTTCTTTTG+TGG | - | chr5_4:41049379-41049398 | Msa0851060:intron | 20.0% |
| !!! | AAATATTATTTTCTGGAATG+GGG | + | chr5_4:41049688-41049707 | None:intergenic | 20.0% |
| !!! | CTAAATATTATTTTCTGGAA+TGG | + | chr5_4:41049690-41049709 | None:intergenic | 20.0% |
| !!! | TAGTTATTCCTTTTAGAATT+TGG | - | chr5_4:41049838-41049857 | Msa0851060:intron | 20.0% |
| !!! | TTACCTTTTAACTAACTTTA+GGG | + | chr5_4:41049880-41049899 | None:intergenic | 20.0% |
| !! | TTGTTAATTTCTCTGTTATT+GGG | + | chr5_4:41050026-41050045 | None:intergenic | 20.0% |
| !! | ATTGTTAATTTCTCTGTTAT+TGG | + | chr5_4:41050027-41050046 | None:intergenic | 20.0% |
| !!! | CTTTTTTAGATTTTGTTTGT+TGG | - | chr5_4:41050241-41050260 | Msa0851060:intron | 20.0% |
| !!! | AAAACTATTTTGCCTAAATA+TGG | + | chr5_4:41050285-41050304 | None:intergenic | 20.0% |
| !! | AAATTAAAATGTTAACGAGA+CGG | + | chr5_4:41050566-41050585 | None:intergenic | 20.0% |
| !! | AACAAATAACATGAACAATA+TGG | + | chr5_4:41050688-41050707 | None:intergenic | 20.0% |
| ! | TCAATCAATGACAAACAATT+TGG | + | chr5_4:41048465-41048484 | None:intergenic | 25.0% |
| ! | GATTATTGAATTGTATGTGT+TGG | - | chr5_4:41048721-41048740 | Msa0851060:CDS | 25.0% |
| ! | TATATGTATAAAATTCCGAG+TGG | - | chr5_4:41048940-41048959 | Msa0851060:intron | 25.0% |
| ! | TTGTTTGAAAACTTGATATC+CGG | - | chr5_4:41048994-41049013 | Msa0851060:intron | 25.0% |
| ! | ATGAAAACCATTACTCATTA+AGG | - | chr5_4:41049224-41049243 | Msa0851060:intron | 25.0% |
| ! | AATTGAACCTTAATGAGTAA+TGG | + | chr5_4:41049234-41049253 | None:intergenic | 25.0% |
| !! | ATAGATATCACTCTTCTTTT+AGG | - | chr5_4:41049294-41049313 | Msa0851060:intron | 25.0% |
| !! | AAAAAGGGTATGAAATACAA+AGG | + | chr5_4:41049448-41049467 | None:intergenic | 25.0% |
| ! | TACTTAGAACAGAGAAAAAA+GGG | + | chr5_4:41049463-41049482 | None:intergenic | 25.0% |
| !! | TTTGAAGTTTGAACTCATAA+TGG | - | chr5_4:41049513-41049532 | Msa0851060:intron | 25.0% |
| ! | TTGAAGTTTGAACTCATAAT+GGG | - | chr5_4:41049514-41049533 | Msa0851060:intron | 25.0% |
| !!! | ACAATTTTTAGGTTACTTAC+CGG | - | chr5_4:41049549-41049568 | Msa0851060:intron | 25.0% |
| ! | CTCTTTATTGACAATTTACT+TGG | + | chr5_4:41049602-41049621 | None:intergenic | 25.0% |
| ! | TATATACTATATATGCTACC+TGG | - | chr5_4:41049651-41049670 | Msa0851060:intron | 25.0% |
| !! | AACATATATGCATGATAATG+TGG | - | chr5_4:41049728-41049747 | Msa0851060:intron | 25.0% |
| !!! | ATTCCTTTTAGAATTTGGTT+AGG | - | chr5_4:41049843-41049862 | Msa0851060:intron | 25.0% |
| ! | AAACCCTAAAGTTAGTTAAA+AGG | - | chr5_4:41049874-41049893 | Msa0851060:intron | 25.0% |
| !!! | CTTACCTTTTAACTAACTTT+AGG | + | chr5_4:41049881-41049900 | None:intergenic | 25.0% |
| !!! | TCCTCATTCTTTTTTCTTTT+TGG | - | chr5_4:41050097-41050116 | Msa0851060:intron | 25.0% |
| ! | ACCAAAAAGAAAAAAGAATG+AGG | + | chr5_4:41050101-41050120 | None:intergenic | 25.0% |
| !! | TTTTACTCTTGAAATGTTGA+TGG | - | chr5_4:41050301-41050320 | Msa0851060:intron | 25.0% |
| ! | TCAACTTACTATTATGTTGT+GGG | - | chr5_4:41050384-41050403 | Msa0851060:intron | 25.0% |
| ! | GCATAAATTGATCAATTACT+AGG | + | chr5_4:41050518-41050537 | None:intergenic | 25.0% |
| !!! | TGCTTTAATTTGTTTCTTTG+TGG | - | chr5_4:41050709-41050728 | Msa0851060:CDS | 25.0% |
| !! | ATTGTTATTGAGTGAGTATA+TGG | - | chr5_4:41050889-41050908 | Msa0851060:five_prime_UTR | 25.0% |
| TCAATGACAAACAATTTGGA+GGG | + | chr5_4:41048461-41048480 | None:intergenic | 30.0% | |
| ATCAATGACAAACAATTTGG+AGG | + | chr5_4:41048462-41048481 | None:intergenic | 30.0% | |
| GATTAACCAACAAGTCAATT+TGG | - | chr5_4:41048483-41048502 | Msa0851060:three_prime_UTR | 30.0% | |
| ! | TAACAGTGTCGAATTGAAAA+TGG | + | chr5_4:41048563-41048582 | None:intergenic | 30.0% |
| ! | ATTTTCAATTCGACACTGTT+AGG | - | chr5_4:41048562-41048581 | Msa0851060:exon | 30.0% |
| ! | TTTTCAATTCGACACTGTTA+GGG | - | chr5_4:41048563-41048582 | Msa0851060:exon | 30.0% |
| GGTTTCATTTCTTCCAATTA+TGG | - | chr5_4:41048584-41048603 | Msa0851060:CDS | 30.0% | |
| AACGATGAATTGAAATTCGA+AGG | + | chr5_4:41048685-41048704 | None:intergenic | 30.0% | |
| !! | ATTTTTCAACCTTCTGACTT+GGG | + | chr5_4:41048854-41048873 | None:intergenic | 30.0% |
| ATAACAAGTCCAAAGTGAAA+GGG | + | chr5_4:41048901-41048920 | None:intergenic | 30.0% | |
| AATAACAAGTCCAAAGTGAA+AGG | + | chr5_4:41048902-41048921 | None:intergenic | 30.0% | |
| TATCTTATGCAAAACCCTTT+GGG | + | chr5_4:41049194-41049213 | None:intergenic | 30.0% | |
| TTATCTTATGCAAAACCCTT+TGG | + | chr5_4:41049195-41049214 | None:intergenic | 30.0% | |
| ! | GTAATGGTTTTCATCAATCA+AGG | + | chr5_4:41049218-41049237 | None:intergenic | 30.0% |
| !! | AGAAGTTGATAACGAACAAA+AGG | + | chr5_4:41049329-41049348 | None:intergenic | 30.0% |
| CGTTATCAACTTCTAAGTAT+AGG | - | chr5_4:41049335-41049354 | Msa0851060:intron | 30.0% | |
| GTACTTAGAACAGAGAAAAA+AGG | + | chr5_4:41049464-41049483 | None:intergenic | 30.0% | |
| ! | CATGATAATGTGGTAACTTA+TGG | - | chr5_4:41049738-41049757 | Msa0851060:intron | 30.0% |
| !! | CTAACTTTAGGGTTTAAGTT+AGG | + | chr5_4:41049869-41049888 | None:intergenic | 30.0% |
| CGAACAAATCAATCCTTATA+AGG | + | chr5_4:41049915-41049934 | None:intergenic | 30.0% | |
| ACACTATAATTTCATCAAGC+TGG | + | chr5_4:41050064-41050083 | None:intergenic | 30.0% | |
| TTGATTTAGCATGACAACAA+AGG | + | chr5_4:41050126-41050145 | None:intergenic | 30.0% | |
| CATGCTAAATCAAATAGTTC+TGG | - | chr5_4:41050133-41050152 | Msa0851060:intron | 30.0% | |
| !! | AAATCAAATAGTTCTGGTAC+AGG | - | chr5_4:41050139-41050158 | Msa0851060:intron | 30.0% |
| !! | GAAGTATCAGAAAGATTTTC+TGG | - | chr5_4:41050187-41050206 | Msa0851060:intron | 30.0% |
| GTCAACTTACTATTATGTTG+TGG | - | chr5_4:41050383-41050402 | Msa0851060:intron | 30.0% | |
| CAATTTATGCACTCTTTAGT+AGG | - | chr5_4:41050528-41050547 | Msa0851060:CDS | 30.0% | |
| ACAGCAAATGACAATGATAA+AGG | - | chr5_4:41050598-41050617 | Msa0851060:intron | 30.0% | |
| ! | GTTTCTTTGTGGTTTACTTT+TGG | - | chr5_4:41050720-41050739 | Msa0851060:CDS | 30.0% |
| !!! | AGAACTCTGAAATCTTTTGT+AGG | - | chr5_4:41050839-41050858 | Msa0851060:five_prime_UTR | 30.0% |
| !! | TGTTGACCAAATTGACTTGT+TGG | + | chr5_4:41048492-41048511 | None:intergenic | 35.0% |
| AGAGATAGAGATACCTTGAT+CGG | + | chr5_4:41048659-41048678 | None:intergenic | 35.0% | |
| GTTGGAATTGATTGTAGAGA+TGG | - | chr5_4:41048739-41048758 | Msa0851060:intron | 35.0% | |
| AATACGCAATTGGATCTCAT+CGG | + | chr5_4:41048791-41048810 | None:intergenic | 35.0% | |
| !! | CATTTTTCAACCTTCTGACT+TGG | + | chr5_4:41048855-41048874 | None:intergenic | 35.0% |
| AGTGAAAGGGGGTTTAAAAA+TGG | + | chr5_4:41048888-41048907 | None:intergenic | 35.0% | |
| ! | TTTTAAACCCCCTTTCACTT+TGG | - | chr5_4:41048889-41048908 | Msa0851060:intron | 35.0% |
| TAACAAGTCCAAAGTGAAAG+GGG | + | chr5_4:41048900-41048919 | None:intergenic | 35.0% | |
| ! | TCTAAGTACTGCACAAGAAA+TGG | - | chr5_4:41049475-41049494 | Msa0851060:intron | 35.0% |
| ! | CTAAGTACTGCACAAGAAAT+GGG | - | chr5_4:41049476-41049495 | Msa0851060:intron | 35.0% |
| ACATGCACATATTTCTTCTC+CGG | + | chr5_4:41049571-41049590 | None:intergenic | 35.0% | |
| AGGCCTAACCAAATTCTAAA+AGG | + | chr5_4:41049849-41049868 | None:intergenic | 35.0% | |
| ! | AGAATTGACGAAGCCTTATA+AGG | - | chr5_4:41049899-41049918 | Msa0851060:intron | 35.0% |
| !! | CATAGGAATTGAGTTGACAT+TGG | - | chr5_4:41049978-41049997 | Msa0851060:intron | 35.0% |
| ! | ATTGGAAGAGTGTACAAATG+TGG | - | chr5_4:41049996-41050015 | Msa0851060:intron | 35.0% |
| ! | TTGGAAGAGTGTACAAATGT+GGG | - | chr5_4:41049997-41050016 | Msa0851060:intron | 35.0% |
| ! | ATCAAGCTGGTTTCAATAAC+AGG | + | chr5_4:41050051-41050070 | None:intergenic | 35.0% |
| ! | CTCAAGTTGTTGCCATATTT+AGG | - | chr5_4:41050270-41050289 | Msa0851060:intron | 35.0% |
| GATCCAGCTTTCAAAATCTA+AGG | + | chr5_4:41050327-41050346 | None:intergenic | 35.0% | |
| !! | ATTTTGAAAGCTGGATCTTG+TGG | - | chr5_4:41050330-41050349 | Msa0851060:intron | 35.0% |
| AAAATGTTAACGAGACGGTT+GGG | + | chr5_4:41050561-41050580 | None:intergenic | 35.0% | |
| TAAAATGTTAACGAGACGGT+TGG | + | chr5_4:41050562-41050581 | None:intergenic | 35.0% | |
| TGCTCTTGTTCAATCTTCTT+AGG | + | chr5_4:41050646-41050665 | None:intergenic | 35.0% | |
| AGAGATACCTTGATCGGAAA+GGG | + | chr5_4:41048653-41048672 | None:intergenic | 40.0% | |
| TAGAGATACCTTGATCGGAA+AGG | + | chr5_4:41048654-41048673 | None:intergenic | 40.0% | |
| GAAAGGGGGTTTAAAAATGG+TGG | + | chr5_4:41048885-41048904 | None:intergenic | 40.0% | |
| AACAAGTCCAAAGTGAAAGG+GGG | + | chr5_4:41048899-41048918 | None:intergenic | 40.0% | |
| GCAACAAAATCACATCCACT+CGG | + | chr5_4:41048958-41048977 | None:intergenic | 40.0% | |
| CAATTTCCCAGTGCCAATTT+GGG | + | chr5_4:41049122-41049141 | None:intergenic | 40.0% | |
| TCAATTTCCCAGTGCCAATT+TGG | + | chr5_4:41049123-41049142 | None:intergenic | 40.0% | |
| TTATGCAAAACCCTTTGGGT+TGG | + | chr5_4:41049190-41049209 | None:intergenic | 40.0% | |
| AATGGGGAAAGTAAAAAGCC+AGG | + | chr5_4:41049672-41049691 | None:intergenic | 40.0% | |
| TCTAGTTGACGTGAGATATC+TGG | - | chr5_4:41049939-41049958 | Msa0851060:intron | 40.0% | |
| CTCAATTCCTATGTGAGAAG+CGG | + | chr5_4:41049971-41049990 | None:intergenic | 40.0% | |
| !!! | GAAAGATTTTCTGGAACAGC+TGG | - | chr5_4:41050196-41050215 | Msa0851060:intron | 40.0% |
| !! | TGGCCTTAGATTTTGAAAGC+TGG | - | chr5_4:41050321-41050340 | Msa0851060:intron | 40.0% |
| GTCTTGAGAGTTTGAAGGAA+AGG | - | chr5_4:41050406-41050425 | Msa0851060:intron | 40.0% | |
| TAACAACAGCATGTATGACG+CGG | + | chr5_4:41050436-41050455 | None:intergenic | 40.0% | |
| ACAATGATAAAGGCTCAAGC+TGG | - | chr5_4:41050608-41050627 | Msa0851060:intron | 40.0% | |
| !! | AACAAGAGCATCATCCAAAG+TGG | - | chr5_4:41050656-41050675 | Msa0851060:intron | 40.0% |
| CAATATGGTTCGAACCACTT+TGG | + | chr5_4:41050673-41050692 | None:intergenic | 40.0% | |
| TGAGTCGTATCTTACAACCA+GGG | + | chr5_4:41050790-41050809 | None:intergenic | 40.0% | |
| ATGAGTCGTATCTTACAACC+AGG | + | chr5_4:41050791-41050810 | None:intergenic | 40.0% | |
| GTAAGAAGAAGCAGCTCTGT+GGG | + | chr5_4:41048619-41048638 | None:intergenic | 45.0% | |
| CACAGAGCTGCTTCTTCTTA+CGG | - | chr5_4:41048618-41048637 | Msa0851060:CDS | 45.0% | |
| CCATGGGATCAATACGCAAT+TGG | + | chr5_4:41048801-41048820 | None:intergenic | 45.0% | |
| ! | CCAATTGCGTATTGATCCCA+TGG | - | chr5_4:41048798-41048817 | Msa0851060:intron | 45.0% |
| AGTTCATCGTCCAAGTCCAT+GGG | + | chr5_4:41048817-41048836 | None:intergenic | 45.0% | |
| GTCTTCATACCCAAGTCAGA+AGG | - | chr5_4:41048842-41048861 | Msa0851060:intron | 45.0% | |
| GATTGAACCCTCGGATTACT+CGG | + | chr5_4:41049028-41049047 | None:intergenic | 45.0% | |
| AAATAGGCGCCACAAGTGAA+CGG | + | chr5_4:41049054-41049073 | None:intergenic | 45.0% | |
| ATTGAACGTGAGACCTTGAG+AGG | - | chr5_4:41049138-41049157 | Msa0851060:CDS | 45.0% | |
| GCAGTGCACGTAAAAATGCA+AGG | + | chr5_4:41049426-41049445 | None:intergenic | 45.0% | |
| AGTACTGCACAAGAAATGGG+CGG | - | chr5_4:41049479-41049498 | Msa0851060:intron | 45.0% | |
| TACAGGTTGCTGAGGAGATA+GGG | - | chr5_4:41050156-41050175 | Msa0851060:intron | 45.0% | |
| TGAAAGCTGGATCTTGTGGA+AGG | - | chr5_4:41050334-41050353 | Msa0851060:intron | 45.0% | |
| TGTGGGTCTTGAGAGTTTGA+AGG | - | chr5_4:41050401-41050420 | Msa0851060:intron | 45.0% | |
| ! | AGAATTTAAAGCCAGCTCCC+TGG | - | chr5_4:41050770-41050789 | Msa0851060:five_prime_UTR | 45.0% |
| !!! | ATTATTTTATTATACAATTA+GGG | - | chr5_4:41050361-41050380 | Msa0851060:intron | 5.0% |
| TGGGAATTGGCGGCCATAAT+TGG | + | chr5_4:41048600-41048619 | None:intergenic | 50.0% | |
| AGAAGCAGCTCTGTGGGAAT+TGG | + | chr5_4:41048613-41048632 | None:intergenic | 50.0% | |
| CGTAAGAAGAAGCAGCTCTG+TGG | + | chr5_4:41048620-41048639 | None:intergenic | 50.0% | |
| AGAGCTGCTTCTTCTTACGG+CGG | - | chr5_4:41048621-41048640 | Msa0851060:CDS | 50.0% | |
| ACGCAATTGGATCTCATCGG+AGG | + | chr5_4:41048788-41048807 | None:intergenic | 50.0% | |
| ! | GCGTATTGATCCCATGGACT+TGG | - | chr5_4:41048804-41048823 | Msa0851060:intron | 50.0% |
| GAGTTCATCGTCCAAGTCCA+TGG | + | chr5_4:41048818-41048837 | None:intergenic | 50.0% | |
| GACTTGGACGATGAACTCAC+TGG | - | chr5_4:41048820-41048839 | Msa0851060:intron | 50.0% | |
| CCTCGGATTACTCGGTCTTT+GGG | + | chr5_4:41049020-41049039 | None:intergenic | 50.0% | |
| CCAAAGACCGAGTAATCCGA+GGG | - | chr5_4:41049018-41049037 | Msa0851060:intron | 50.0% | |
| TCAATCCCACCGTTCACTTG+TGG | - | chr5_4:41049042-41049061 | Msa0851060:intron | 50.0% | |
| TGCCAATTTGGGCATGCTAG+TGG | + | chr5_4:41049111-41049130 | None:intergenic | 50.0% | |
| TAGCATGCCCAAATTGGCAC+TGG | - | chr5_4:41049112-41049131 | Msa0851060:intron | 50.0% | |
| AGCATGCCCAAATTGGCACT+GGG | - | chr5_4:41049113-41049132 | Msa0851060:intron | 50.0% | |
| ATGTCCAAGCCAACACCATC+AGG | - | chr5_4:41049164-41049183 | Msa0851060:CDS | 50.0% | |
| GACAGTACCGCTTCTCACAT+AGG | - | chr5_4:41049961-41049980 | Msa0851060:intron | 50.0% | |
| ! | AGTTCTGGTACAGGTTGCTG+AGG | - | chr5_4:41050148-41050167 | Msa0851060:intron | 50.0% |
| GTACAGGTTGCTGAGGAGAT+AGG | - | chr5_4:41050155-41050174 | Msa0851060:intron | 50.0% | |
| GTATCTTACAACCAGGGAGC+TGG | + | chr5_4:41050784-41050803 | None:intergenic | 50.0% | |
| AGCAGCTCTGTGGGAATTGG+CGG | + | chr5_4:41048610-41048629 | None:intergenic | 55.0% | |
| ! | GATGGACTTAGTACCCGACC+CGG | - | chr5_4:41048757-41048776 | Msa0851060:intron | 55.0% |
| GGATTACTCGGTCTTTGGGC+CGG | + | chr5_4:41049016-41049035 | None:intergenic | 55.0% | |
| CCCAAAGACCGAGTAATCCG+AGG | - | chr5_4:41049017-41049036 | Msa0851060:intron | 55.0% | |
| CCCTCGGATTACTCGGTCTT+TGG | + | chr5_4:41049021-41049040 | None:intergenic | 55.0% | |
| GAACGGTGGGATTGAACCCT+CGG | + | chr5_4:41049037-41049056 | None:intergenic | 55.0% | |
| CGCCACTAGCATGCCCAAAT+TGG | - | chr5_4:41049106-41049125 | Msa0851060:intron | 55.0% | |
| GCTTGGACATGCTCCTCTCA+AGG | + | chr5_4:41049154-41049173 | None:intergenic | 55.0% | |
| !! | TTGGCCTGATGGTGTTGGCT+TGG | + | chr5_4:41049171-41049190 | None:intergenic | 55.0% |
| !! | TTGGGTTGGCCTGATGGTGT+TGG | + | chr5_4:41049176-41049195 | None:intergenic | 55.0% |
| ACACCATCAGGCCAACCCAA+AGG | - | chr5_4:41049176-41049195 | Msa0851060:intron | 55.0% | |
| CACCATCAGGCCAACCCAAA+GGG | - | chr5_4:41049177-41049196 | Msa0851060:intron | 55.0% | |
| !! | AACCCTTTGGGTTGGCCTGA+TGG | + | chr5_4:41049182-41049201 | None:intergenic | 55.0% |
| GCGCTGTCCCTTTCCGATCA+AGG | - | chr5_4:41048643-41048662 | Msa0851060:CDS | 60.0% | |
| ACTTAGTACCCGACCCGGTG+CGG | - | chr5_4:41048762-41048781 | Msa0851060:intron | 60.0% | |
| AGGCGCCACAAGTGAACGGT+GGG | + | chr5_4:41049050-41049069 | None:intergenic | 60.0% | |
| TAGGCGCCACAAGTGAACGG+TGG | + | chr5_4:41049051-41049070 | None:intergenic | 60.0% | |
| ATCTCATCGGAGGCCGCACC+GGG | + | chr5_4:41048778-41048797 | None:intergenic | 65.0% | |
| GATCTCATCGGAGGCCGCAC+CGG | + | chr5_4:41048779-41048798 | None:intergenic | 65.0% | |
| ATCGGAGGCCGCACCGGGTC+GGG | + | chr5_4:41048773-41048792 | None:intergenic | 75.0% | |
| CATCGGAGGCCGCACCGGGT+CGG | + | chr5_4:41048774-41048793 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 41048426 | 41050918 | 41048426 | ID=Msa0851060;Name=Msa0851060 |
| chr5_4 | mRNA | 41048426 | 41050918 | 41048426 | ID=Msa0851060-mRNA-1;Parent=Msa0851060;Name=Msa0851060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=177|1|1|1|1|1|4|155|132 |
| chr5_4 | exon | 41048426 | 41048742 | 41048426 | ID=Msa0851060-mRNA-1:exon:12933;Parent=Msa0851060-mRNA-1 |
| chr5_4 | exon | 41049127 | 41049183 | 41049127 | ID=Msa0851060-mRNA-1:exon:12932;Parent=Msa0851060-mRNA-1 |
| chr5_4 | exon | 41050471 | 41050588 | 41050471 | ID=Msa0851060-mRNA-1:exon:12931;Parent=Msa0851060-mRNA-1 |
| chr5_4 | exon | 41050680 | 41050918 | 41050680 | ID=Msa0851060-mRNA-1:exon:12930;Parent=Msa0851060-mRNA-1 |
| chr5_4 | five_prime_UTR | 41050742 | 41050918 | 41050742 | ID=Msa0851060-mRNA-1:five_prime_utr;Parent=Msa0851060-mRNA-1 |
| chr5_4 | CDS | 41050680 | 41050741 | 41050680 | ID=Msa0851060-mRNA-1:cds;Parent=Msa0851060-mRNA-1 |
| chr5_4 | CDS | 41050471 | 41050588 | 41050471 | ID=Msa0851060-mRNA-1:cds;Parent=Msa0851060-mRNA-1 |
| chr5_4 | CDS | 41049127 | 41049183 | 41049127 | ID=Msa0851060-mRNA-1:cds;Parent=Msa0851060-mRNA-1 |
| chr5_4 | CDS | 41048581 | 41048742 | 41048581 | ID=Msa0851060-mRNA-1:cds;Parent=Msa0851060-mRNA-1 |
| chr5_4 | three_prime_UTR | 41048426 | 41048580 | 41048426 | ID=Msa0851060-mRNA-1:three_prime_utr;Parent=Msa0851060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
