AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629370 MtrunA17_Chr4g0005721 97.380 229 5 1 1 228 1 229 1.85e-165 455
Msa0629370 MtrunA17_Chr1g0174241 33.533 167 93 5 62 227 176 325 5.28e-19 84.0
Msa0629370 MtrunA17_Chr1g0198131 35.294 153 83 5 76 227 165 302 1.62e-16 76.6
Msa0629370 MtrunA17_Chr1g0174221 29.412 153 91 4 76 227 97 233 1.67e-14 70.5
Msa0629370 MtrunA17_Chr3g0122741 29.412 153 90 4 76 227 12 147 2.92e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629370 AT2G38025.1 60.262 229 81 4 9 227 5 233 2.25e-88 261
Msa0629370 AT2G38025.2 66.667 171 51 2 63 227 40 210 2.27e-74 224
Msa0629370 AT3G57810.2 34.416 154 83 4 76 228 168 304 1.11e-21 91.7
Msa0629370 AT3G57810.4 34.416 154 83 4 76 228 168 304 1.11e-21 91.7
Msa0629370 AT3G57810.3 34.416 154 83 4 76 228 168 304 1.11e-21 91.7

Find 81 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTAACTTATAATAATT+TGG 0.041709 4_3:+10236806 None:intergenic
GGATTGGGCAACCTGATTTC+TGG 0.156112 4_3:-10237856 Msa0629370:CDS
AATTGGGGTAATAGTCATTT+TGG 0.177304 4_3:-10236774 Msa0629370:three_prime_UTR
AATCGGAATTCAAGCTTATT+TGG 0.181024 4_3:-10240127 Msa0629370:CDS
CGCCATGGAGTTTGAGGAAT+TGG 0.217801 4_3:+10240353 None:intergenic
TTAGTTTGATAATTTATAAT+TGG 0.225266 4_3:-10236791 Msa0629370:three_prime_UTR
GTATGGAAGTGAATTTAAAA+AGG 0.264562 4_3:-10237084 Msa0629370:CDS
TCAAATGATAATTAGCCTAA+TGG 0.297630 4_3:+10236853 None:intergenic
TTCATTCCGATTGCCGAGTA+TGG 0.298574 4_3:-10237101 Msa0629370:CDS
TAGTTTGATAATTTATAATT+GGG 0.301501 4_3:-10236790 Msa0629370:three_prime_UTR
TCTGGTATGTACACAATAAT+TGG 0.313597 4_3:+10237278 None:intergenic
CGGTTGCTTCAGTTGTTTCT+CGG 0.328646 4_3:-10240153 Msa0629370:CDS
AAACTAACTTATAATAATTT+GGG 0.337402 4_3:+10236807 None:intergenic
GATTCTCCTCCCCAGAAATC+AGG 0.356950 4_3:+10237845 None:intergenic
GCAGTTACTGCAGGCGGATT+GGG 0.359521 4_3:-10237871 Msa0629370:intron
TGCAGTTACTGCAGGCGGAT+TGG 0.360734 4_3:-10237872 Msa0629370:intron
GATTGGGCAACCTGATTTCT+GGG 0.372109 4_3:-10237855 Msa0629370:CDS
CAGTTGTTTCTCGGTTTAAT+CGG 0.374617 4_3:-10240144 Msa0629370:CDS
ACATTAATTACCTTCCCATT+AGG 0.378095 4_3:-10236868 Msa0629370:three_prime_UTR
CATTATGACCTTCTGTTATG+AGG 0.384606 4_3:-10237017 Msa0629370:exon
CAGAAGTGAAACTCTGAGTA+TGG 0.384691 4_3:+10236930 None:intergenic
CAAATGATAATTAGCCTAAT+GGG 0.384846 4_3:+10236854 None:intergenic
AAATTTACTTATTGTCATAT+CGG 0.386228 4_3:+10236604 None:intergenic
CTCATAACAGAAGGTCATAA+TGG 0.393100 4_3:+10237018 None:intergenic
AGAGGCAGTGGTCGGGGATC+TGG 0.401931 4_3:-10237125 Msa0629370:CDS
CGGCTACCCATCACACATTC+GGG 0.413956 4_3:+10236749 None:intergenic
GCGGCTACCCATCACACATT+CGG 0.420843 4_3:+10236748 None:intergenic
GCGGTGTCTGTTTCGTGCTC+TGG 0.442002 4_3:-10238926 Msa0629370:intron
GGGAGGAGAATCAGAACTAT+TGG 0.442300 4_3:-10237834 Msa0629370:intron
AATTCAAGCTTATTTGGTGT+TGG 0.442709 4_3:-10240121 Msa0629370:CDS
TTTAAATTCACTTCCATACT+CGG 0.461333 4_3:+10237088 None:intergenic
AGGAATTGGAACTGAGAGGA+TGG 0.464181 4_3:+10240367 None:intergenic
ATTCTTAAGCAGTTGAAAGA+TGG 0.469119 4_3:-10240205 Msa0629370:CDS
ATCAACCGTGACGGCAATGA+TGG 0.474613 4_3:+10237999 None:intergenic
TTAAGGCATACCTCATGCTC+TGG 0.476452 4_3:+10237260 None:intergenic
GCAGCATAGAGGCAGTGGTC+GGG 0.477212 4_3:-10237132 Msa0629370:intron
ATTTGAGATTGTTTCTTCAC+CGG 0.479973 4_3:-10240173 Msa0629370:CDS
GTTCAGAAGGTTACAGGGGA+TGG 0.490600 4_3:-10238949 Msa0629370:CDS
CGAGAAACAACTGAAGCAAC+CGG 0.497549 4_3:+10240154 None:intergenic
TCTAAAACACACCGTTGTAA+AGG 0.503080 4_3:+10237973 None:intergenic
TCACTTCCATACTCGGCAAT+CGG 0.507697 4_3:+10237095 None:intergenic
CAAAGGAATGGCTCACAACA+AGG 0.527955 4_3:-10238378 Msa0629370:CDS
CAGCATAGAGGCAGTGGTCG+GGG 0.532591 4_3:-10237131 Msa0629370:CDS
TTCAGAAGGTTACAGGGGAT+GGG 0.534226 4_3:-10238948 Msa0629370:CDS
GAAGCTATATGTGAAAATGT+AGG 0.546789 4_3:-10238045 Msa0629370:CDS
TAACACAGATGAATTAAGAA+TGG 0.549472 4_3:-10238076 Msa0629370:intron
AGTTTGATAATTTATAATTG+GGG 0.550558 4_3:-10236789 Msa0629370:three_prime_UTR
TTTGGTACCCGAATGTGTGA+TGG 0.567959 4_3:-10236756 Msa0629370:three_prime_UTR
GTTCGATGAAATCAGGTCAA+AGG 0.573936 4_3:-10238395 Msa0629370:intron
TTTCAGTTCAGAAGGTTACA+GGG 0.574807 4_3:-10238954 Msa0629370:CDS
ATGGCGCAAAAGCTTCTCAA+TGG 0.575668 4_3:-10240336 Msa0629370:intron
GGGCAACCTGATTTCTGGGG+AGG 0.583375 4_3:-10237851 Msa0629370:CDS
ATGAAATCAGGTCAAAGGAA+TGG 0.584616 4_3:-10238390 Msa0629370:intron
AGGAATTGTATCGGCGAAGG+AGG 0.586453 4_3:-10236997 Msa0629370:three_prime_UTR
TGTGAGAGTATCTACGCTAG+TGG 0.587204 4_3:+10236888 None:intergenic
AAAATGCAGCATAGAGGCAG+TGG 0.587658 4_3:-10237137 Msa0629370:intron
AGAAGCCATCATTGCCGTCA+CGG 0.595204 4_3:-10238004 Msa0629370:CDS
TTCCAATTCCTCAAACTCCA+TGG 0.599102 4_3:-10240355 Msa0629370:exon
TTGGTACCCGAATGTGTGAT+GGG 0.600266 4_3:-10236755 Msa0629370:three_prime_UTR
AATGGCTCACAACAAGGGAA+TGG 0.600900 4_3:-10238372 Msa0629370:CDS
ATGAGGAATTGTATCGGCGA+AGG 0.604741 4_3:-10237000 Msa0629370:exon
TCTACGCTAGTGGGAAAACA+AGG 0.604879 4_3:+10236898 None:intergenic
GATTCATTGATGGAATATTG+CGG 0.605902 4_3:+10236729 None:intergenic
TGCAGCATAGAGGCAGTGGT+CGG 0.616152 4_3:-10237133 Msa0629370:intron
TTTGCTGCAGTTACTGCAGG+CGG 0.617614 4_3:-10237877 Msa0629370:intron
ATACAATTCCTCATAACAGA+AGG 0.623406 4_3:+10237009 None:intergenic
TTCAGTTCAGAAGGTTACAG+GGG 0.624268 4_3:-10238953 Msa0629370:CDS
TCTGTTATGAGGAATTGTAT+CGG 0.624608 4_3:-10237006 Msa0629370:exon
CGCGAGGAGAGAGAAAATGC+AGG 0.629042 4_3:-10238338 Msa0629370:intron
GTGAGAGTATCTACGCTAGT+GGG 0.632214 4_3:+10236889 None:intergenic
TGTGTACATACCAGAGCATG+AGG 0.636499 4_3:-10237270 Msa0629370:intron
AGAAGGTTACAGGGGATGGG+CGG 0.639785 4_3:-10238945 Msa0629370:CDS
TTTGAGGAATTGGAACTGAG+AGG 0.649028 4_3:+10240363 None:intergenic
TGATAATTAGCCTAATGGGA+AGG 0.650064 4_3:+10236858 None:intergenic
ATTGGGCAACCTGATTTCTG+GGG 0.653227 4_3:-10237854 Msa0629370:CDS
TAAAGGCTCATCAACCGTGA+CGG 0.660842 4_3:+10237990 None:intergenic
AAAGGAATGGCTCACAACAA+GGG 0.664021 4_3:-10238377 Msa0629370:CDS
AATGGCTCTTAACCAACGCG+AGG 0.698050 4_3:-10238354 Msa0629370:CDS
CGGTTGATGAGCCTTTACAA+CGG 0.717115 4_3:-10237984 Msa0629370:intron
GCTGTGAGGCTATTGTTCAG+CGG 0.720718 4_3:-10237047 Msa0629370:CDS
GTTCTAGCAGAAAAGCTGTG+AGG 0.757620 4_3:-10237061 Msa0629370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATTTTGATAAATACA+GGG + chr4_3:10237379-10237398 None:intergenic 10.0%
!!! TATATAATTTTGATAAATAC+AGG + chr4_3:10237380-10237399 None:intergenic 10.0%
!! TCAATAAAATATAATCAAAA+AGG + chr4_3:10237610-10237629 None:intergenic 10.0%
!! AAACTAACTTATAATAATTT+GGG + chr4_3:10240135-10240154 None:intergenic 10.0%
!!! TTAGTTTGATAATTTATAAT+TGG - chr4_3:10240148-10240167 Msa0629370:CDS 10.0%
!!! TAGTTTGATAATTTATAATT+GGG - chr4_3:10240149-10240168 Msa0629370:CDS 10.0%
!!! TTTATTACTTTCACTTTTTT+GGG - chr4_3:10236914-10236933 Msa0629370:three_prime_UTR 15.0%
!!! TATCTTCTATTAGTTTTTTA+TGG + chr4_3:10237503-10237522 None:intergenic 15.0%
!!! TATATTTTATTAAAAGCTTC+TGG - chr4_3:10238202-10238221 Msa0629370:intron 15.0%
!!! AAACTAAGTATTGTTTTTTA+AGG + chr4_3:10239699-10239718 None:intergenic 15.0%
!! CAAACTAACTTATAATAATT+TGG + chr4_3:10240136-10240155 None:intergenic 15.0%
!!! AGTTTGATAATTTATAATTG+GGG - chr4_3:10240150-10240169 Msa0629370:CDS 15.0%
!!! TTAAAATTTTGATTCATTGA+TGG + chr4_3:10240223-10240242 None:intergenic 15.0%
!! AAATTTACTTATTGTCATAT+CGG + chr4_3:10240338-10240357 None:intergenic 15.0%
!! TTAGCAGTGTTAAAAAATTA+GGG + chr4_3:10236667-10236686 None:intergenic 20.0%
!! ATTAGCAGTGTTAAAAAATT+AGG + chr4_3:10236668-10236687 None:intergenic 20.0%
!!! CTTTATTACTTTCACTTTTT+TGG - chr4_3:10236913-10236932 Msa0629370:three_prime_UTR 20.0%
!! GTTATTAAATATTCTTCTGT+TGG - chr4_3:10237467-10237486 Msa0629370:intron 20.0%
!! TTTGATATATTTAGAGACTA+AGG - chr4_3:10237537-10237556 Msa0629370:intron 20.0%
!!! ATATTTTATTGATCCTTTGT+TGG - chr4_3:10237618-10237637 Msa0629370:intron 20.0%
!!! TATTTTATTGATCCTTTGTT+GGG - chr4_3:10237619-10237638 Msa0629370:intron 20.0%
!! ATTTAACAAACAAATTTCCA+GGG + chr4_3:10237682-10237701 None:intergenic 20.0%
!! AATTTAACAAACAAATTTCC+AGG + chr4_3:10237683-10237702 None:intergenic 20.0%
!!! TTTTCATGAATTTATCCTTA+TGG - chr4_3:10237701-10237720 Msa0629370:intron 20.0%
!! TTTCATGAATTTATCCTTAT+GGG - chr4_3:10237702-10237721 Msa0629370:intron 20.0%
!!! AGAAGTATCTTTATCAATAA+TGG - chr4_3:10237857-10237876 Msa0629370:CDS 20.0%
!!! AATTTGAACTCTTTTCTTAA+TGG - chr4_3:10237884-10237903 Msa0629370:intron 20.0%
!! GTGAAAAAAATCTATAACAA+AGG + chr4_3:10238057-10238076 None:intergenic 20.0%
!!! GTTGTTCAAATTAATTTTAG+AGG - chr4_3:10238505-10238524 Msa0629370:intron 20.0%
!!! AAATTAATTTTAGAGGTAAG+CGG - chr4_3:10238512-10238531 Msa0629370:intron 20.0%
!! GATATACTAGCAATAAAATA+TGG - chr4_3:10238630-10238649 Msa0629370:intron 20.0%
!!! AGATCTTAATTTTCTGTTAA+TGG + chr4_3:10238994-10239013 None:intergenic 20.0%
!! TATGTATTTAATCCAATGAT+TGG - chr4_3:10239030-10239049 Msa0629370:intron 20.0%
!! ACTAAATAGAGTTTCTTATT+TGG - chr4_3:10239178-10239197 Msa0629370:intron 20.0%
!!! GGTCTATCTAATATTTTATA+AGG - chr4_3:10239727-10239746 Msa0629370:intron 20.0%
!! TATGGAAGTGAATTTAAAAA+GGG - chr4_3:10239856-10239875 Msa0629370:intron 20.0%
! TTTGCATGAATGTGTAATTA+GGG - chr4_3:10236975-10236994 Msa0629370:three_prime_UTR 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr4_3:10237216-10237235 Msa0629370:intron 25.0%
! TAAAATGGTTGTTTACTCTA+AGG + chr4_3:10237323-10237342 None:intergenic 25.0%
!!! TAAACAACCATTTTAGTACT+TGG - chr4_3:10237328-10237347 Msa0629370:intron 25.0%
! TAACAAAACTAACTAAAGAG+TGG + chr4_3:10237451-10237470 None:intergenic 25.0%
! TTTAACAAACAAATTTCCAG+GGG + chr4_3:10237681-10237700 None:intergenic 25.0%
!!! AATATAAGCCTTTTAAGGAA+GGG - chr4_3:10237760-10237779 Msa0629370:intron 25.0%
! AAAATATAACCCTAGAATCA+AGG + chr4_3:10238190-10238209 None:intergenic 25.0%
! TGAAAGCAAAACAAACAAAA+GGG + chr4_3:10238665-10238684 None:intergenic 25.0%
! TGGGAAAAATAAAGGTTATA+AGG + chr4_3:10238797-10238816 None:intergenic 25.0%
! AAAGTGAATGGGAAAAATAA+AGG + chr4_3:10238805-10238824 None:intergenic 25.0%
! GAAATGAAAACAAAGTGAAT+GGG + chr4_3:10238816-10238835 None:intergenic 25.0%
! TAACACAGATGAATTAAGAA+TGG - chr4_3:10238863-10238882 Msa0629370:intron 25.0%
! AACAGAAAATTAAGATCTTG+AGG - chr4_3:10238996-10239015 Msa0629370:intron 25.0%
! AAAATAACACATCCAATCAT+TGG + chr4_3:10239045-10239064 None:intergenic 25.0%
!!! GTCAGCTTTTGATTTAAAAA+GGG + chr4_3:10239422-10239441 None:intergenic 25.0%
!!! TGTCAGCTTTTGATTTAAAA+AGG + chr4_3:10239423-10239442 None:intergenic 25.0%
!! CAATACTTAGTTTGATCATT+TGG - chr4_3:10239706-10239725 Msa0629370:intron 25.0%
! TTTAAATTCACTTCCATACT+CGG + chr4_3:10239854-10239873 None:intergenic 25.0%
! GTATGGAAGTGAATTTAAAA+AGG - chr4_3:10239855-10239874 Msa0629370:intron 25.0%
!! CAAATGATAATTAGCCTAAT+GGG + chr4_3:10240088-10240107 None:intergenic 25.0%
!! TCAAATGATAATTAGCCTAA+TGG + chr4_3:10240089-10240108 None:intergenic 25.0%
ATTCTTAAGCAGTTGAAAGA+TGG - chr4_3:10236734-10236753 Msa0629370:three_prime_UTR 30.0%
! ATTTGAGATTGTTTCTTCAC+CGG - chr4_3:10236766-10236785 Msa0629370:three_prime_UTR 30.0%
AATCGGAATTCAAGCTTATT+TGG - chr4_3:10236812-10236831 Msa0629370:three_prime_UTR 30.0%
!! AATTCAAGCTTATTTGGTGT+TGG - chr4_3:10236818-10236837 Msa0629370:three_prime_UTR 30.0%
!!! ACTCATTTTTTCGCTAGAAT+TGG - chr4_3:10236851-10236870 Msa0629370:three_prime_UTR 30.0%
CTAATTACACATTCATGCAA+AGG + chr4_3:10236976-10236995 None:intergenic 30.0%
CTTTGCATGAATGTGTAATT+AGG - chr4_3:10236974-10236993 Msa0629370:three_prime_UTR 30.0%
TAATTAGGGTCTCTTTGAAT+TGG - chr4_3:10236989-10237008 Msa0629370:three_prime_UTR 30.0%
GCTGAAAAAGAAAACTATCT+TGG + chr4_3:10237114-10237133 None:intergenic 30.0%
AGATTCCTTTCTATAGCAAA+AGG + chr4_3:10237250-10237269 None:intergenic 30.0%
ACGAAGAATTGTGAAACTAA+AGG + chr4_3:10237284-10237303 None:intergenic 30.0%
AACACATCCAAGTACTAAAA+TGG + chr4_3:10237338-10237357 None:intergenic 30.0%
! TTTTAGTACTTGGATGTGTT+AGG - chr4_3:10237338-10237357 Msa0629370:intron 30.0%
TCTAGTACTAAATTGATCCA+CGG + chr4_3:10237423-10237442 None:intergenic 30.0%
ACTAATAGAAGATAAACTCG+AGG - chr4_3:10237509-10237528 Msa0629370:intron 30.0%
CGATTTCAGAATTACAGATT+TGG - chr4_3:10237725-10237744 Msa0629370:intron 30.0%
! CGTTGAATATAAGCCTTTTA+AGG - chr4_3:10237755-10237774 Msa0629370:intron 30.0%
!! GAATATAAGCCTTTTAAGGA+AGG - chr4_3:10237759-10237778 Msa0629370:intron 30.0%
! TTTTCTTTCCCTTCCTTAAA+AGG + chr4_3:10237771-10237790 None:intergenic 30.0%
!! TATAACAAAGGCATTGAAGA+TGG + chr4_3:10238045-10238064 None:intergenic 30.0%
TATTAAACTGCCTTGATTCT+AGG - chr4_3:10238177-10238196 Msa0629370:intron 30.0%
ATTAAACTGCCTTGATTCTA+GGG - chr4_3:10238178-10238197 Msa0629370:intron 30.0%
TACATCAATTGGATTGAAGA+CGG + chr4_3:10238398-10238417 None:intergenic 30.0%
! TTAATTTGAACAACTCGCTA+TGG + chr4_3:10238499-10238518 None:intergenic 30.0%
GTGAAAGCAAAACAAACAAA+AGG + chr4_3:10238666-10238685 None:intergenic 30.0%
!!! GTTTGTTTTGCTTTCACTTA+AGG - chr4_3:10238669-10238688 Msa0629370:intron 30.0%
GGAAATGAAAACAAAGTGAA+TGG + chr4_3:10238817-10238836 None:intergenic 30.0%
GAAGCTATATGTGAAAATGT+AGG - chr4_3:10238894-10238913 Msa0629370:intron 30.0%
AGAAACTCTATTTAGTCCTT+AGG + chr4_3:10239174-10239193 None:intergenic 30.0%
!!! CGGTCTTTTAAAATTCACAT+CGG + chr4_3:10239467-10239486 None:intergenic 30.0%
TCTGGTATGTACACAATAAT+TGG + chr4_3:10239664-10239683 None:intergenic 30.0%
AAACTAAAAATGCAGCATAG+AGG - chr4_3:10239796-10239815 Msa0629370:intron 30.0%
ATACAATTCCTCATAACAGA+AGG + chr4_3:10239933-10239952 None:intergenic 30.0%
TCTGTTATGAGGAATTGTAT+CGG - chr4_3:10239933-10239952 Msa0629370:intron 30.0%
ACATTAATTACCTTCCCATT+AGG - chr4_3:10240071-10240090 Msa0629370:intron 30.0%
! AATTGGGGTAATAGTCATTT+TGG - chr4_3:10240165-10240184 Msa0629370:CDS 30.0%
GATTCATTGATGGAATATTG+CGG + chr4_3:10240213-10240232 None:intergenic 30.0%
!! CAGTTGTTTCTCGGTTTAAT+CGG - chr4_3:10236795-10236814 Msa0629370:three_prime_UTR 35.0%
!! TGCATAAGTTTTGTGATGAC+TGG - chr4_3:10237032-10237051 Msa0629370:CDS 35.0%
!! GAGTTCCTTTTGCTATAGAA+AGG - chr4_3:10237242-10237261 Msa0629370:intron 35.0%
AGAAAGGAATCTTTCACATG+AGG - chr4_3:10237258-10237277 Msa0629370:intron 35.0%
TCCTTTGTTGGGAAAGAAAA+TGG - chr4_3:10237630-10237649 Msa0629370:intron 35.0%
! ACCATTTTCTTTCCCAACAA+AGG + chr4_3:10237634-10237653 None:intergenic 35.0%
!! TAATTCTGAAATCGCCCATA+AGG + chr4_3:10237719-10237738 None:intergenic 35.0%
! TTTTCAGTTCAGAAGGTTAC+AGG - chr4_3:10237984-10238003 Msa0629370:intron 35.0%
TTTCAGTTCAGAAGGTTACA+GGG - chr4_3:10237985-10238004 Msa0629370:CDS 35.0%
ATTCGGCTACAAAACTGAAA+AGG + chr4_3:10238079-10238098 None:intergenic 35.0%
! TCCTACTTGACAATGTTTTG+TGG + chr4_3:10238280-10238299 None:intergenic 35.0%
GATGAGACTGATACATCAAT+TGG + chr4_3:10238409-10238428 None:intergenic 35.0%
! GCTCAAACTAATGAAGGTTT+TGG + chr4_3:10238471-10238490 None:intergenic 35.0%
ATGAAATCAGGTCAAAGGAA+TGG - chr4_3:10238549-10238568 Msa0629370:intron 35.0%
TCTCAGATCAATAGTTGAAG+CGG + chr4_3:10238735-10238754 None:intergenic 35.0%
CGCAAGTCAAAACATTGAAA+AGG + chr4_3:10238838-10238857 None:intergenic 35.0%
! TCTAAAACACACCGTTGTAA+AGG + chr4_3:10238969-10238988 None:intergenic 35.0%
AGGAGATAATAATGCAAGCA+TGG + chr4_3:10239154-10239173 None:intergenic 35.0%
GCTTGCATTATTATCTCCTA+AGG - chr4_3:10239155-10239174 Msa0629370:intron 35.0%
TTGATTTAAAAAGGGCAACC+CGG + chr4_3:10239414-10239433 None:intergenic 35.0%
!! GTTTCATCTGTTGACTCATT+CGG + chr4_3:10239487-10239506 None:intergenic 35.0%
AAAGAATATGGACATTGGTC+GGG + chr4_3:10239614-10239633 None:intergenic 35.0%
GAAAGAATATGGACATTGGT+CGG + chr4_3:10239615-10239634 None:intergenic 35.0%
ACCAATGTCCATATTCTTTC+AGG - chr4_3:10239615-10239634 Msa0629370:intron 35.0%
ACCTGAAAGAATATGGACAT+TGG + chr4_3:10239619-10239638 None:intergenic 35.0%
TGACAGTACCTGAAAGAATA+TGG + chr4_3:10239626-10239645 None:intergenic 35.0%
CTCATAACAGAAGGTCATAA+TGG + chr4_3:10239924-10239943 None:intergenic 35.0%
CATTATGACCTTCTGTTATG+AGG - chr4_3:10239922-10239941 Msa0629370:intron 35.0%
! TGATAATTAGCCTAATGGGA+AGG + chr4_3:10240084-10240103 None:intergenic 35.0%
TTTGAGGAATTGGAACTGAG+AGG + chr4_3:10236579-10236598 None:intergenic 40.0%
TTCCAATTCCTCAAACTCCA+TGG - chr4_3:10236584-10236603 Msa0629370:three_prime_UTR 40.0%
GACATTTGAATCCTCAGACT+CGG - chr4_3:10236697-10236716 Msa0629370:three_prime_UTR 40.0%
ACTAAATTGATCCACGGAAG+AGG + chr4_3:10237417-10237436 None:intergenic 40.0%
GTGACACAGTTCACACATTT+AGG - chr4_3:10237559-10237578 Msa0629370:intron 40.0%
GGACTAAAATGACCAGTACT+CGG - chr4_3:10237580-10237599 Msa0629370:intron 40.0%
TTACCTCAAATTCTTACCCC+TGG - chr4_3:10237662-10237681 Msa0629370:intron 40.0%
TTTCCAGGGGTAAGAATTTG+AGG + chr4_3:10237668-10237687 None:intergenic 40.0%
CTGTTCACTGTGAGAACATA+AGG + chr4_3:10237937-10237956 None:intergenic 40.0%
!! TGAGCGTTTTTCAGTTCAGA+AGG - chr4_3:10237977-10237996 Msa0629370:intron 40.0%
TTCAGTTCAGAAGGTTACAG+GGG - chr4_3:10237986-10238005 Msa0629370:CDS 40.0%
!! TTCAGTTTTGTAGCCGAATG+CGG - chr4_3:10238080-10238099 Msa0629370:intron 40.0%
GCCACAAAACATTGTCAAGT+AGG - chr4_3:10238276-10238295 Msa0629370:intron 40.0%
GTGGAAGCTCAAACTAATGA+AGG + chr4_3:10238477-10238496 None:intergenic 40.0%
ATTTGAACAACTCGCTATGG+TGG + chr4_3:10238496-10238515 None:intergenic 40.0%
!! ACAGTTGGTTCGATGAAATC+AGG - chr4_3:10238537-10238556 Msa0629370:intron 40.0%
GTTCGATGAAATCAGGTCAA+AGG - chr4_3:10238544-10238563 Msa0629370:intron 40.0%
AAAGGAATGGCTCACAACAA+GGG - chr4_3:10238562-10238581 Msa0629370:intron 40.0%
! TATTTTGCTGCAGTTACTGC+AGG - chr4_3:10239059-10239078 Msa0629370:intron 40.0%
AAATCAAAAGCTGACACGTG+AGG - chr4_3:10239227-10239246 Msa0629370:intron 40.0%
AATCAAAAGCTGACACGTGA+GGG - chr4_3:10239228-10239247 Msa0629370:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr4_3:10239274-10239293 Msa0629370:intron 40.0%
AACAGCCTCTTGTGTAAAAC+AGG - chr4_3:10239317-10239336 Msa0629370:intron 40.0%
ACAGCCTCTTGTGTAAAACA+GGG - chr4_3:10239318-10239337 Msa0629370:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr4_3:10239348-10239367 Msa0629370:intron 40.0%
TGAACTCATGTGAAAACCCT+GGG - chr4_3:10239573-10239592 Msa0629370:intron 40.0%
! GACACGAATTTTCATTCCCA+GGG + chr4_3:10239592-10239611 None:intergenic 40.0%
CAGAAGTGAAACTCTGAGTA+TGG + chr4_3:10240012-10240031 None:intergenic 40.0%
AGGAATTGGAACTGAGAGGA+TGG + chr4_3:10236575-10236594 None:intergenic 45.0%
! ATTGAGAAGCTTTTGCGCCA+TGG + chr4_3:10236604-10236623 None:intergenic 45.0%
ATGGCGCAAAAGCTTCTCAA+TGG - chr4_3:10236603-10236622 Msa0629370:three_prime_UTR 45.0%
ATCATCATTCTCCGAGTCTG+AGG + chr4_3:10236711-10236730 None:intergenic 45.0%
CGAGAAACAACTGAAGCAAC+CGG + chr4_3:10236788-10236807 None:intergenic 45.0%
!! CGGTTGCTTCAGTTGTTTCT+CGG - chr4_3:10236786-10236805 Msa0629370:three_prime_UTR 45.0%
AAAAGGAACTCGCTCCTGTT+TGG + chr4_3:10237233-10237252 None:intergenic 45.0%
ATCATTGAATGCCTCTTCCG+TGG - chr4_3:10237403-10237422 Msa0629370:intron 45.0%
CAAAAAGGATAGCCGAGTAC+TGG + chr4_3:10237595-10237614 None:intergenic 45.0%
TTCAGAAGGTTACAGGGGAT+GGG - chr4_3:10237991-10238010 Msa0629370:CDS 45.0%
!! TCAGTTTTGTAGCCGAATGC+GGG - chr4_3:10238081-10238100 Msa0629370:intron 45.0%
TAGAGGTAAGCGGTAACAGT+TGG - chr4_3:10238522-10238541 Msa0629370:intron 45.0%
CAAAGGAATGGCTCACAACA+AGG - chr4_3:10238561-10238580 Msa0629370:intron 45.0%
AATGGCTCACAACAAGGGAA+TGG - chr4_3:10238567-10238586 Msa0629370:intron 45.0%
TAAAGGCTCATCAACCGTGA+CGG + chr4_3:10238952-10238971 None:intergenic 45.0%
!! CGGTTGATGAGCCTTTACAA+CGG - chr4_3:10238955-10238974 Msa0629370:CDS 45.0%
GATTGGGCAACCTGATTTCT+GGG - chr4_3:10239084-10239103 Msa0629370:intron 45.0%
ATTGGGCAACCTGATTTCTG+GGG - chr4_3:10239085-10239104 Msa0629370:intron 45.0%
GGGAGGAGAATCAGAACTAT+TGG - chr4_3:10239105-10239124 Msa0629370:intron 45.0%
ATCAAAAGCTGACACGTGAG+GGG - chr4_3:10239229-10239248 Msa0629370:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr4_3:10239280-10239299 Msa0629370:intron 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr4_3:10239281-10239300 Msa0629370:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr4_3:10239314-10239333 None:intergenic 45.0%
! CCTTCCCTGTTTTACACAAG+AGG + chr4_3:10239325-10239344 None:intergenic 45.0%
CCTCTTGTGTAAAACAGGGA+AGG - chr4_3:10239322-10239341 Msa0629370:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr4_3:10239344-10239363 Msa0629370:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr4_3:10239347-10239366 Msa0629370:intron 45.0%
CTGAACTCATGTGAAAACCC+TGG - chr4_3:10239572-10239591 Msa0629370:intron 45.0%
! GGACACGAATTTTCATTCCC+AGG + chr4_3:10239593-10239612 None:intergenic 45.0%
TGTGTACATACCAGAGCATG+AGG - chr4_3:10239669-10239688 Msa0629370:intron 45.0%
TTAAGGCATACCTCATGCTC+TGG + chr4_3:10239682-10239701 None:intergenic 45.0%
AAAATGCAGCATAGAGGCAG+TGG - chr4_3:10239802-10239821 Msa0629370:intron 45.0%
TTCATTCCGATTGCCGAGTA+TGG - chr4_3:10239838-10239857 Msa0629370:intron 45.0%
TCACTTCCATACTCGGCAAT+CGG + chr4_3:10239847-10239866 None:intergenic 45.0%
GTTCTAGCAGAAAAGCTGTG+AGG - chr4_3:10239878-10239897 Msa0629370:intron 45.0%
! ATGAGGAATTGTATCGGCGA+AGG - chr4_3:10239939-10239958 Msa0629370:intron 45.0%
TCTACGCTAGTGGGAAAACA+AGG + chr4_3:10240044-10240063 None:intergenic 45.0%
!! GTGAGAGTATCTACGCTAGT+GGG + chr4_3:10240053-10240072 None:intergenic 45.0%
!! TGTGAGAGTATCTACGCTAG+TGG + chr4_3:10240054-10240073 None:intergenic 45.0%
TTTGGTACCCGAATGTGTGA+TGG - chr4_3:10240183-10240202 Msa0629370:CDS 45.0%
TTGGTACCCGAATGTGTGAT+GGG - chr4_3:10240184-10240203 Msa0629370:CDS 45.0%
CGCCATGGAGTTTGAGGAAT+TGG + chr4_3:10236589-10236608 None:intergenic 50.0%
! CTTTTGCGCCATGGAGTTTG+AGG + chr4_3:10236595-10236614 None:intergenic 50.0%
GTTCAGAAGGTTACAGGGGA+TGG - chr4_3:10237990-10238009 Msa0629370:CDS 50.0%
ATCCAATCAGCACCCGCATT+CGG + chr4_3:10238096-10238115 None:intergenic 50.0%
AATGGCTCTTAACCAACGCG+AGG - chr4_3:10238585-10238604 Msa0629370:intron 50.0%
! CATTTTCTCTCTCCTCGCGT+TGG + chr4_3:10238600-10238619 None:intergenic 50.0%
AGAAGCCATCATTGCCGTCA+CGG - chr4_3:10238935-10238954 Msa0629370:CDS 50.0%
ATCAACCGTGACGGCAATGA+TGG + chr4_3:10238943-10238962 None:intergenic 50.0%
TTTGCTGCAGTTACTGCAGG+CGG - chr4_3:10239062-10239081 Msa0629370:intron 50.0%
GGATTGGGCAACCTGATTTC+TGG - chr4_3:10239083-10239102 Msa0629370:intron 50.0%
GATTCTCCTCCCCAGAAATC+AGG + chr4_3:10239097-10239116 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr4_3:10239258-10239277 None:intergenic 50.0%
GCTGTGAGGCTATTGTTCAG+CGG - chr4_3:10239892-10239911 Msa0629370:intron 50.0%
! AGGAATTGTATCGGCGAAGG+AGG - chr4_3:10239942-10239961 Msa0629370:intron 50.0%
AGAAGGTTACAGGGGATGGG+CGG - chr4_3:10237994-10238013 Msa0629370:CDS 55.0%
CGCGAGGAGAGAGAAAATGC+AGG - chr4_3:10238601-10238620 Msa0629370:intron 55.0%
TGCAGTTACTGCAGGCGGAT+TGG - chr4_3:10239067-10239086 Msa0629370:intron 55.0%
! GCAGTTACTGCAGGCGGATT+GGG - chr4_3:10239068-10239087 Msa0629370:intron 55.0%
TGACACGTGAGGGGTAACCT+TGG - chr4_3:10239238-10239257 Msa0629370:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr4_3:10239293-10239312 Msa0629370:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr4_3:10239387-10239406 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr4_3:10239388-10239407 None:intergenic 55.0%
TGCAGCATAGAGGCAGTGGT+CGG - chr4_3:10239806-10239825 Msa0629370:intron 55.0%
CGGCTACCCATCACACATTC+GGG + chr4_3:10240193-10240212 None:intergenic 55.0%
GCGGCTACCCATCACACATT+CGG + chr4_3:10240194-10240213 None:intergenic 55.0%
GCGGTGTCTGTTTCGTGCTC+TGG - chr4_3:10238013-10238032 Msa0629370:CDS 60.0%
!! AGCCGAATGCGGGTGCTGAT+TGG - chr4_3:10238091-10238110 Msa0629370:intron 60.0%
! GGGCAACCTGATTTCTGGGG+AGG - chr4_3:10239088-10239107 Msa0629370:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr4_3:10239247-10239266 Msa0629370:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr4_3:10239360-10239379 Msa0629370:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr4_3:10239375-10239394 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr4_3:10239376-10239395 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr4_3:10239375-10239394 Msa0629370:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr4_3:10239376-10239395 Msa0629370:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr4_3:10239392-10239411 Msa0629370:intron 60.0%
GCAGCATAGAGGCAGTGGTC+GGG - chr4_3:10239807-10239826 Msa0629370:intron 60.0%
CAGCATAGAGGCAGTGGTCG+GGG - chr4_3:10239808-10239827 Msa0629370:intron 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr4_3:10239362-10239381 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr4_3:10239377-10239396 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr4_3:10239381-10239400 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr4_3:10239382-10239401 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr4_3:10239393-10239412 Msa0629370:intron 65.0%
AGAGGCAGTGGTCGGGGATC+TGG - chr4_3:10239814-10239833 Msa0629370:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10236566 10240395 10236566 ID=Msa0629370;Name=Msa0629370
chr4_3 mRNA 10236566 10240395 10236566 ID=Msa0629370-mRNA-1;Parent=Msa0629370;Name=Msa0629370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=37|1|1|1|1|1|8|453|228
chr4_3 exon 10236566 10237150 10236566 ID=Msa0629370-mRNA-1:exon:3130;Parent=Msa0629370-mRNA-1
chr4_3 exon 10237271 10237324 10237271 ID=Msa0629370-mRNA-1:exon:3129;Parent=Msa0629370-mRNA-1
chr4_3 exon 10237835 10237889 10237835 ID=Msa0629370-mRNA-1:exon:3128;Parent=Msa0629370-mRNA-1
chr4_3 exon 10237985 10238090 10237985 ID=Msa0629370-mRNA-1:exon:3127;Parent=Msa0629370-mRNA-1
chr4_3 exon 10238339 10238402 10238339 ID=Msa0629370-mRNA-1:exon:3126;Parent=Msa0629370-mRNA-1
chr4_3 exon 10238927 10239011 10238927 ID=Msa0629370-mRNA-1:exon:3125;Parent=Msa0629370-mRNA-1
chr4_3 exon 10240079 10240247 10240079 ID=Msa0629370-mRNA-1:exon:3124;Parent=Msa0629370-mRNA-1
chr4_3 exon 10240337 10240395 10240337 ID=Msa0629370-mRNA-1:exon:3123;Parent=Msa0629370-mRNA-1
chr4_3 five_prime_UTR 10240359 10240395 10240359 ID=Msa0629370-mRNA-1:five_prime_utr;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10240337 10240358 10240337 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10240079 10240247 10240079 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10238927 10239011 10238927 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10238339 10238402 10238339 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10237985 10238090 10237985 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10237835 10237889 10237835 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10237271 10237324 10237271 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 CDS 10237019 10237150 10237019 ID=Msa0629370-mRNA-1:cds;Parent=Msa0629370-mRNA-1
chr4_3 three_prime_UTR 10236566 10237018 10236566 ID=Msa0629370-mRNA-1:three_prime_utr;Parent=Msa0629370-mRNA-1
Gene Sequence

>Msa0629370

ATGGCGCAAAAGCTTCTCAATGACTCGGAGAATGATGATAACATTCTTAAGCAGTTGAAAGATGGTACAGCGAAATTTGAGATTGTTTCTTCACCGGTTGCTTCAGTTGTTTCTCGGTTTAATCGGAATTCAAGCTTATTTGGTGTTGGAAATTGTAGCACTCATTTTTTCGCTAGAATTGGTTCATCACTTGAACAGTCTGCAGCAATGAAGAAACTTGAGCGTTTTTCAGTTCAGAAGGTTACAGGGGATGGGCGGTGTCTGTTTCGTGCTCTGGTCAAAGGAATGGCTCACAACAAGGGAATGGCTCTTAACCAACGCGAGGAGAGAGAAAATGCAGATGAATTAAGAATGGCAGTCAAAGAAGCTATATGTGAAAATGTAGGAGATCGCAAGTTATATGAAGAAGCCATCATTGCCGTCACGGTTGATGAGCCTTTACAACGTTACTGCAGGCGGATTGGGCAACCTGATTTCTGGGGAGGAGAATCAGAACTATTGGTACTGTCAAAGTTATGTAAGCAGCCAATTATTGTGTACATACCAGAGCATGAGCATAGAGGCAGTGGTCGGGGATCTGGTTTCATTCCGATTGCCGAGTATGGAAGTGAATTTAAAAAGGGTTCTAGCAGAAAAGCTGTGAGGCTATTGTTCAGCGGTAAAAACCATTATGACCTTCTGTTATGA

Protein sequence

>Msa0629370

MAQKLLNDSENDDNILKQLKDGTAKFEIVSSPVASVVSRFNRNSSLFGVGNCSTHFFARIGSSLEQSAAMKKLERFSVQKVTGDGRCLFRALVKGMAHNKGMALNQREERENADELRMAVKEAICENVGDRKLYEEAIIAVTVDEPLQRYCRRIGQPDFWGGESELLVLSKLCKQPIIVYIPEHEHRGSGRGSGFIPIAEYGSEFKKGSSRKAVRLLFSGKNHYDLLL*