Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827620 | XP_003615238.1 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 7.98e-94 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827620 | sp|Q8VXX9|BETL1_ARATH | 67.153 | 137 | 40 | 2 | 1 | 132 | 1 | 137 | 3.68e-66 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827620 | G7KBG1 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 3.81e-94 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa0827620 | 0.814911 | 1.210162e-51 | -8.615850e-47 |
| Msa0101320 | Msa0827620 | 0.837320 | 5.573332e-57 | -8.615850e-47 |
| Msa0629370 | Msa0827620 | -0.809201 | 2.127194e-50 | -8.615850e-47 |
| Msa0650090 | Msa0827620 | -0.804717 | 1.888797e-49 | -8.615850e-47 |
| Msa0756630 | Msa0827620 | 0.809249 | 2.077359e-50 | -8.615850e-47 |
| Msa0827620 | Msa0851060 | 0.992606 | 2.610766e-194 | -8.615850e-47 |
| Msa0827620 | Msa1007610 | 0.824359 | 8.425960e-54 | -8.615850e-47 |
| Msa0827620 | Msa1008490 | -0.800214 | 1.601066e-48 | -8.615850e-47 |
| Msa0827620 | Msa1018050 | -0.801861 | 7.373455e-49 | -8.615850e-47 |
| Msa0827620 | Msa1040120 | -0.801129 | 1.041447e-48 | -8.615850e-47 |
| Msa0827620 | Msa1055690 | -0.816305 | 5.922845e-52 | -8.615850e-47 |
| Msa0827620 | Msa1077390 | -0.812712 | 3.692435e-51 | -8.615850e-47 |
| Msa0827620 | Msa1114020 | -0.802374 | 5.782716e-49 | -8.615850e-47 |
| Msa0827620 | Msa1221560 | -0.825500 | 4.532126e-54 | -8.615850e-47 |
| Msa0827620 | Msa1335860 | -0.810597 | 1.065240e-50 | -8.615850e-47 |
| Msa0827620 | Msa1364470 | 0.807909 | 4.014841e-50 | -8.615850e-47 |
| Msa0168100 | Msa0827620 | -0.801962 | 7.030277e-49 | -8.615850e-47 |
| Msa0196130 | Msa0827620 | 0.817736 | 2.824383e-52 | -8.615850e-47 |
| Msa0197230 | Msa0827620 | -0.804545 | 2.052118e-49 | -8.615850e-47 |
| Msa0200950 | Msa0827620 | 0.806301 | 8.793282e-50 | -8.615850e-47 |
| Msa0254290 | Msa0827620 | -0.811956 | 5.402136e-51 | -8.615850e-47 |
| Msa0258670 | Msa0827620 | 0.801909 | 7.208430e-49 | -8.615850e-47 |
| Msa0289890 | Msa0827620 | -0.811686 | 6.183763e-51 | -8.615850e-47 |
| Msa0358170 | Msa0827620 | -0.800940 | 1.138291e-48 | -8.615850e-47 |
| Msa0526640 | Msa0827620 | 0.827478 | 1.529986e-54 | -8.615850e-47 |
| Msa0546840 | Msa0827620 | -0.813498 | 2.482551e-51 | -8.615850e-47 |
| Msa0554140 | Msa0827620 | -0.801939 | 7.106089e-49 | -8.615850e-47 |
| Msa0574890 | Msa0827620 | -0.809113 | 2.221295e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827620 | MtrunA17_Chr5g0427101 | 99.242 | 132 | 1 | 0 | 1 | 132 | 1 | 132 | 7.34e-98 | 276 |
| Msa0827620 | MtrunA17_Chr3g0132601 | 75.758 | 132 | 30 | 2 | 3 | 132 | 2 | 133 | 1.14e-70 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0827620 | AT4G14600.1 | 67.153 | 137 | 40 | 2 | 1 | 132 | 1 | 137 | 3.74e-67 | 199 |
| Msa0827620 | AT1G29060.1 | 64.925 | 134 | 45 | 1 | 1 | 132 | 1 | 134 | 1.03e-56 | 173 |
| Msa0827620 | AT1G29060.2 | 66.667 | 90 | 30 | 0 | 43 | 132 | 4 | 93 | 7.77e-37 | 121 |
Find 49 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCAATGACAAACAATT+TGG | 0.215739 | 5_3:+68994244 | None:intergenic |
| GTTTCTTTGTGGTTTACTTT+TGG | 0.257279 | 5_3:-68991986 | Msa0827620:CDS |
| GGTTTCATTTCTTCCAATTA+TGG | 0.264091 | 5_3:-68994122 | Msa0827620:exon |
| TGGGAATTGGCGGCCATAAT+TGG | 0.272560 | 5_3:+68994109 | None:intergenic |
| TGCTCTTGTTCAATCTTCTT+AGG | 0.276292 | 5_3:+68992063 | None:intergenic |
| TGCTTTAATTTGTTTCTTTG+TGG | 0.284943 | 5_3:-68991997 | Msa0827620:CDS |
| TAACAGTGTCGAATTGAAAA+TGG | 0.286669 | 5_3:+68994146 | None:intergenic |
| GATTAACCAACAAGTCAATT+TGG | 0.290646 | 5_3:-68994223 | Msa0827620:five_prime_UTR |
| ATTGTTATTGAGTGAGTATA+TGG | 0.314893 | 5_3:-68991817 | Msa0827620:three_prime_UTR |
| AACAAATAACATGAACAATA+TGG | 0.361569 | 5_3:+68992021 | None:intergenic |
| GTACAGGTTGCTGAGGAGAT+AGG | 0.380028 | 5_3:-68992551 | Msa0827620:intron |
| CACAGAGCTGCTTCTTCTTA+CGG | 0.391375 | 5_3:-68994088 | Msa0827620:CDS |
| ATCGGAGGCCGCACCGGGTC+GGG | 0.399280 | 5_3:+68993936 | None:intergenic |
| ACAGCAAATGACAATGATAA+AGG | 0.408664 | 5_3:-68992108 | Msa0827620:intron |
| AGAAGCAGCTCTGTGGGAAT+TGG | 0.410252 | 5_3:+68994096 | None:intergenic |
| ATCTCATCGGAGGCCGCACC+GGG | 0.429967 | 5_3:+68993931 | None:intergenic |
| GATCTCATCGGAGGCCGCAC+CGG | 0.441770 | 5_3:+68993930 | None:intergenic |
| CCATGGGATCAATACGCAAT+TGG | 0.445697 | 5_3:+68993908 | None:intergenic |
| GCGCTGTCCCTTTCCGATCA+AGG | 0.448825 | 5_3:-68994063 | Msa0827620:intron |
| CAATATGGTTCGAACCACTT+TGG | 0.455603 | 5_3:+68992036 | None:intergenic |
| TGTTGACCAAATTGACTTGT+TGG | 0.457375 | 5_3:+68994217 | None:intergenic |
| AGCAGCTCTGTGGGAATTGG+CGG | 0.461854 | 5_3:+68994099 | None:intergenic |
| CATCGGAGGCCGCACCGGGT+CGG | 0.476186 | 5_3:+68993935 | None:intergenic |
| AGAGATACCTTGATCGGAAA+GGG | 0.490033 | 5_3:+68994056 | None:intergenic |
| GCGTATTGATCCCATGGACT+TGG | 0.495420 | 5_3:-68993902 | Msa0827620:CDS |
| GAGTTCATCGTCCAAGTCCA+TGG | 0.506585 | 5_3:+68993891 | None:intergenic |
| TACAGGTTGCTGAGGAGATA+GGG | 0.518350 | 5_3:-68992550 | Msa0827620:intron |
| GTATCTTACAACCAGGGAGC+TGG | 0.525238 | 5_3:+68991925 | None:intergenic |
| ATCAATGACAAACAATTTGG+AGG | 0.531633 | 5_3:+68994247 | None:intergenic |
| CCAATTGCGTATTGATCCCA+TGG | 0.542939 | 5_3:-68993908 | Msa0827620:CDS |
| AGAATTTAAAGCCAGCTCCC+TGG | 0.550454 | 5_3:-68991936 | Msa0827620:three_prime_UTR |
| ACAATGATAAAGGCTCAAGC+TGG | 0.557678 | 5_3:-68992098 | Msa0827620:CDS |
| TAGAGATACCTTGATCGGAA+AGG | 0.570498 | 5_3:+68994055 | None:intergenic |
| TCAATGACAAACAATTTGGA+GGG | 0.580801 | 5_3:+68994248 | None:intergenic |
| AGTTCATCGTCCAAGTCCAT+GGG | 0.585829 | 5_3:+68993892 | None:intergenic |
| GTAAGAAGAAGCAGCTCTGT+GGG | 0.596400 | 5_3:+68994090 | None:intergenic |
| ATGAGTCGTATCTTACAACC+AGG | 0.599889 | 5_3:+68991918 | None:intergenic |
| GACTTGGACGATGAACTCAC+TGG | 0.600598 | 5_3:-68993886 | Msa0827620:CDS |
| AACAAGAGCATCATCCAAAG+TGG | 0.604677 | 5_3:-68992050 | Msa0827620:CDS |
| GTCTTCATACCCAAGTCAGA+AGG | 0.616448 | 5_3:-68993864 | Msa0827620:CDS |
| AGAGATAGAGATACCTTGAT+CGG | 0.625604 | 5_3:+68994050 | None:intergenic |
| AATACGCAATTGGATCTCAT+CGG | 0.630316 | 5_3:+68993918 | None:intergenic |
| AGTTCTGGTACAGGTTGCTG+AGG | 0.633639 | 5_3:-68992558 | Msa0827620:intron |
| CGTAAGAAGAAGCAGCTCTG+TGG | 0.635507 | 5_3:+68994089 | None:intergenic |
| ACTTAGTACCCGACCCGGTG+CGG | 0.648119 | 5_3:-68993944 | Msa0827620:CDS |
| ACGCAATTGGATCTCATCGG+AGG | 0.679188 | 5_3:+68993921 | None:intergenic |
| AGAGCTGCTTCTTCTTACGG+CGG | 0.688668 | 5_3:-68994085 | Msa0827620:CDS |
| GATGGACTTAGTACCCGACC+CGG | 0.732292 | 5_3:-68993949 | Msa0827620:CDS |
| TGAGTCGTATCTTACAACCA+GGG | 0.738167 | 5_3:+68991919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTATTTTATTATACAATT+AGG | - | chr5_3:68993744-68993763 | Msa0827620:intron | 10.0% |
| !!! | TATAACTATCTACAATTTTT+AGG | - | chr5_3:68992922-68992941 | Msa0827620:intron | 15.0% |
| !!! | TAAATATTATTTTCTGGAAT+GGG | + | chr5_3:68993073-68993092 | None:intergenic | 15.0% |
| !!! | TTCTACTAAATATTATTTTC+TGG | + | chr5_3:68993079-68993098 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATTGCAAATTA+TGG | - | chr5_3:68993156-68993175 | Msa0827620:intron | 15.0% |
| !!! | TCAAGTTTTCAAACAAAAAA+AGG | + | chr5_3:68992374-68992393 | None:intergenic | 20.0% |
| !!! | GTTTTACTATGACTTTAAAT+AGG | + | chr5_3:68992454-68992473 | None:intergenic | 20.0% |
| !!! | AACTTTAAAAAGTTCTTTTG+TGG | - | chr5_3:68992763-68992782 | Msa0827620:intron | 20.0% |
| !!! | AAATATTATTTTCTGGAATG+GGG | + | chr5_3:68993072-68993091 | None:intergenic | 20.0% |
| !!! | CTAAATATTATTTTCTGGAA+TGG | + | chr5_3:68993074-68993093 | None:intergenic | 20.0% |
| !!! | TAGTTATTCCTTTTAGAATT+TGG | - | chr5_3:68993222-68993241 | Msa0827620:intron | 20.0% |
| !!! | TTACCTTTTAACTAACTTTA+GGG | + | chr5_3:68993264-68993283 | None:intergenic | 20.0% |
| !! | TTGTTAATTTCTCTGTTATT+GGG | + | chr5_3:68993410-68993429 | None:intergenic | 20.0% |
| !! | ATTGTTAATTTCTCTGTTAT+TGG | + | chr5_3:68993411-68993430 | None:intergenic | 20.0% |
| !!! | CTTTTTTAGATTTTGTTTGT+TGG | - | chr5_3:68993625-68993644 | Msa0827620:intron | 20.0% |
| !!! | AAAACTATTTTGCCTAAATA+TGG | + | chr5_3:68993669-68993688 | None:intergenic | 20.0% |
| !! | AAATTAAAATGTTAACGAGA+CGG | + | chr5_3:68993950-68993969 | None:intergenic | 20.0% |
| !! | AACAAATAACATGAACAATA+TGG | + | chr5_3:68994072-68994091 | None:intergenic | 20.0% |
| ! | TCAATCAATGACAAACAATT+TGG | + | chr5_3:68991849-68991868 | None:intergenic | 25.0% |
| ! | TATATGTATAAAATTCCGAG+TGG | - | chr5_3:68992324-68992343 | Msa0827620:intron | 25.0% |
| ! | TTGTTTGAAAACTTGATATC+CGG | - | chr5_3:68992378-68992397 | Msa0827620:intron | 25.0% |
| ! | ATGAAAACCATTACTCATTA+AGG | - | chr5_3:68992608-68992627 | Msa0827620:intron | 25.0% |
| ! | AATTGAACCTTAATGAGTAA+TGG | + | chr5_3:68992618-68992637 | None:intergenic | 25.0% |
| !! | ATAGATATCACTCTTCTTTT+AGG | - | chr5_3:68992678-68992697 | Msa0827620:intron | 25.0% |
| !! | AAAAAGGGTATGAAATACAA+AGG | + | chr5_3:68992832-68992851 | None:intergenic | 25.0% |
| ! | TACTTAGAACAGAGAAAAAA+GGG | + | chr5_3:68992847-68992866 | None:intergenic | 25.0% |
| !! | TTTGAAGTTTGAACTCATAA+TGG | - | chr5_3:68992897-68992916 | Msa0827620:intron | 25.0% |
| ! | TTGAAGTTTGAACTCATAAT+GGG | - | chr5_3:68992898-68992917 | Msa0827620:intron | 25.0% |
| !!! | ACAATTTTTAGGTTACTTAC+CGG | - | chr5_3:68992933-68992952 | Msa0827620:intron | 25.0% |
| ! | CTCTTTATTGACAATTTACT+TGG | + | chr5_3:68992986-68993005 | None:intergenic | 25.0% |
| ! | TATATACTATATATGCTACC+TGG | - | chr5_3:68993035-68993054 | Msa0827620:intron | 25.0% |
| !! | AACATATATGCATGATAATG+TGG | - | chr5_3:68993112-68993131 | Msa0827620:intron | 25.0% |
| !!! | ATTCCTTTTAGAATTTGGTT+AGG | - | chr5_3:68993227-68993246 | Msa0827620:intron | 25.0% |
| ! | AAACCCTAAAGTTAGTTAAA+AGG | - | chr5_3:68993258-68993277 | Msa0827620:intron | 25.0% |
| !!! | CTTACCTTTTAACTAACTTT+AGG | + | chr5_3:68993265-68993284 | None:intergenic | 25.0% |
| !!! | TCCTCATTCTTTTTTCTTTT+TGG | - | chr5_3:68993481-68993500 | Msa0827620:intron | 25.0% |
| ! | ACCAAAAAGAAAAAAGAATG+AGG | + | chr5_3:68993485-68993504 | None:intergenic | 25.0% |
| !! | TTTTACTCTTGAAATGTTGA+TGG | - | chr5_3:68993685-68993704 | Msa0827620:intron | 25.0% |
| ! | TCAACTTACTATTATGTTGT+GGG | - | chr5_3:68993768-68993787 | Msa0827620:intron | 25.0% |
| ! | GCATAAATTGATCAATTACT+AGG | + | chr5_3:68993902-68993921 | None:intergenic | 25.0% |
| !!! | TGCTTTAATTTGTTTCTTTG+TGG | - | chr5_3:68994093-68994112 | Msa0827620:CDS | 25.0% |
| !! | ATTGTTATTGAGTGAGTATA+TGG | - | chr5_3:68994273-68994292 | Msa0827620:five_prime_UTR | 25.0% |
| TCAATGACAAACAATTTGGA+GGG | + | chr5_3:68991845-68991864 | None:intergenic | 30.0% | |
| ATCAATGACAAACAATTTGG+AGG | + | chr5_3:68991846-68991865 | None:intergenic | 30.0% | |
| GATTAACCAACAAGTCAATT+TGG | - | chr5_3:68991867-68991886 | Msa0827620:three_prime_UTR | 30.0% | |
| ! | TAACAGTGTCGAATTGAAAA+TGG | + | chr5_3:68991947-68991966 | None:intergenic | 30.0% |
| ! | ATTTTCAATTCGACACTGTT+AGG | - | chr5_3:68991946-68991965 | Msa0827620:exon | 30.0% |
| ! | TTTTCAATTCGACACTGTTA+GGG | - | chr5_3:68991947-68991966 | Msa0827620:exon | 30.0% |
| GGTTTCATTTCTTCCAATTA+TGG | - | chr5_3:68991968-68991987 | Msa0827620:CDS | 30.0% | |
| AACGATGAATTGAAATTCGA+AGG | + | chr5_3:68992069-68992088 | None:intergenic | 30.0% | |
| GATTACTGAATTGTATGTGT+TGG | - | chr5_3:68992105-68992124 | Msa0827620:CDS | 30.0% | |
| !! | ATTTTTCAACCTTCTGACTT+GGG | + | chr5_3:68992238-68992257 | None:intergenic | 30.0% |
| ATAACAAGTCCAAAGTGAAA+GGG | + | chr5_3:68992285-68992304 | None:intergenic | 30.0% | |
| AATAACAAGTCCAAAGTGAA+AGG | + | chr5_3:68992286-68992305 | None:intergenic | 30.0% | |
| TATCTTATGCAAAACCCTTT+GGG | + | chr5_3:68992578-68992597 | None:intergenic | 30.0% | |
| TTATCTTATGCAAAACCCTT+TGG | + | chr5_3:68992579-68992598 | None:intergenic | 30.0% | |
| ! | GTAATGGTTTTCATCAATCA+AGG | + | chr5_3:68992602-68992621 | None:intergenic | 30.0% |
| !! | AGAAGTTGATAACGAACAAA+AGG | + | chr5_3:68992713-68992732 | None:intergenic | 30.0% |
| CGTTATCAACTTCTAAGTAT+AGG | - | chr5_3:68992719-68992738 | Msa0827620:intron | 30.0% | |
| GTACTTAGAACAGAGAAAAA+AGG | + | chr5_3:68992848-68992867 | None:intergenic | 30.0% | |
| ! | CATGATAATGTGGTAACTTA+TGG | - | chr5_3:68993122-68993141 | Msa0827620:intron | 30.0% |
| !! | CTAACTTTAGGGTTTAAGTT+AGG | + | chr5_3:68993253-68993272 | None:intergenic | 30.0% |
| CGAACAAATCAATCCTTATA+AGG | + | chr5_3:68993299-68993318 | None:intergenic | 30.0% | |
| ACACTATAATTTCATCAAGC+TGG | + | chr5_3:68993448-68993467 | None:intergenic | 30.0% | |
| TTGATTTAGCATGACAACAA+AGG | + | chr5_3:68993510-68993529 | None:intergenic | 30.0% | |
| CATGCTAAATCAAATAGTTC+TGG | - | chr5_3:68993517-68993536 | Msa0827620:intron | 30.0% | |
| !! | AAATCAAATAGTTCTGGTAC+AGG | - | chr5_3:68993523-68993542 | Msa0827620:intron | 30.0% |
| !! | GAAGTATCAGAAAGATTTTC+TGG | - | chr5_3:68993571-68993590 | Msa0827620:intron | 30.0% |
| GTCAACTTACTATTATGTTG+TGG | - | chr5_3:68993767-68993786 | Msa0827620:intron | 30.0% | |
| CAATTTATGCACTCTTTAGT+AGG | - | chr5_3:68993912-68993931 | Msa0827620:CDS | 30.0% | |
| ACAGCAAATGACAATGATAA+AGG | - | chr5_3:68993982-68994001 | Msa0827620:intron | 30.0% | |
| ! | GTTTCTTTGTGGTTTACTTT+TGG | - | chr5_3:68994104-68994123 | Msa0827620:CDS | 30.0% |
| !!! | AGAACTCTGAAATCTTTTGT+AGG | - | chr5_3:68994223-68994242 | Msa0827620:five_prime_UTR | 30.0% |
| !! | TGTTGACCAAATTGACTTGT+TGG | + | chr5_3:68991876-68991895 | None:intergenic | 35.0% |
| AGAGATAGAGATACCTTGAT+CGG | + | chr5_3:68992043-68992062 | None:intergenic | 35.0% | |
| GTTGGAATTGATTGTAGAGA+TGG | - | chr5_3:68992123-68992142 | Msa0827620:intron | 35.0% | |
| AATACGCAATTGGATCTCAT+CGG | + | chr5_3:68992175-68992194 | None:intergenic | 35.0% | |
| !! | CATTTTTCAACCTTCTGACT+TGG | + | chr5_3:68992239-68992258 | None:intergenic | 35.0% |
| AGTGAAAGGGGGTTTAAAAA+TGG | + | chr5_3:68992272-68992291 | None:intergenic | 35.0% | |
| ! | TTTTAAACCCCCTTTCACTT+TGG | - | chr5_3:68992273-68992292 | Msa0827620:intron | 35.0% |
| TAACAAGTCCAAAGTGAAAG+GGG | + | chr5_3:68992284-68992303 | None:intergenic | 35.0% | |
| ! | TCTAAGTACTGCACAAGAAA+TGG | - | chr5_3:68992859-68992878 | Msa0827620:intron | 35.0% |
| ! | CTAAGTACTGCACAAGAAAT+GGG | - | chr5_3:68992860-68992879 | Msa0827620:intron | 35.0% |
| ACATGCACATATTTCTTCTC+CGG | + | chr5_3:68992955-68992974 | None:intergenic | 35.0% | |
| AGGCCTAACCAAATTCTAAA+AGG | + | chr5_3:68993233-68993252 | None:intergenic | 35.0% | |
| ! | AGAATTGACGAAGCCTTATA+AGG | - | chr5_3:68993283-68993302 | Msa0827620:intron | 35.0% |
| !! | CATAGGAATTGAGTTGACAT+TGG | - | chr5_3:68993362-68993381 | Msa0827620:intron | 35.0% |
| ! | ATTGGAAGAGTGTACAAATG+TGG | - | chr5_3:68993380-68993399 | Msa0827620:intron | 35.0% |
| ! | TTGGAAGAGTGTACAAATGT+GGG | - | chr5_3:68993381-68993400 | Msa0827620:intron | 35.0% |
| ! | ATCAAGCTGGTTTCAATAAC+AGG | + | chr5_3:68993435-68993454 | None:intergenic | 35.0% |
| ! | CTCAAGTTGTTGCCATATTT+AGG | - | chr5_3:68993654-68993673 | Msa0827620:intron | 35.0% |
| GATCCAGCTTTCAAAATCTA+AGG | + | chr5_3:68993711-68993730 | None:intergenic | 35.0% | |
| !! | ATTTTGAAAGCTGGATCTTG+TGG | - | chr5_3:68993714-68993733 | Msa0827620:intron | 35.0% |
| AAAATGTTAACGAGACGGTT+GGG | + | chr5_3:68993945-68993964 | None:intergenic | 35.0% | |
| TAAAATGTTAACGAGACGGT+TGG | + | chr5_3:68993946-68993965 | None:intergenic | 35.0% | |
| TGCTCTTGTTCAATCTTCTT+AGG | + | chr5_3:68994030-68994049 | None:intergenic | 35.0% | |
| AGAGATACCTTGATCGGAAA+GGG | + | chr5_3:68992037-68992056 | None:intergenic | 40.0% | |
| TAGAGATACCTTGATCGGAA+AGG | + | chr5_3:68992038-68992057 | None:intergenic | 40.0% | |
| GAAAGGGGGTTTAAAAATGG+TGG | + | chr5_3:68992269-68992288 | None:intergenic | 40.0% | |
| AACAAGTCCAAAGTGAAAGG+GGG | + | chr5_3:68992283-68992302 | None:intergenic | 40.0% | |
| GCAACAAAATCACATCCACT+CGG | + | chr5_3:68992342-68992361 | None:intergenic | 40.0% | |
| CAATTTCCCAGTGCCAATTT+GGG | + | chr5_3:68992506-68992525 | None:intergenic | 40.0% | |
| TCAATTTCCCAGTGCCAATT+TGG | + | chr5_3:68992507-68992526 | None:intergenic | 40.0% | |
| TTATGCAAAACCCTTTGGGT+TGG | + | chr5_3:68992574-68992593 | None:intergenic | 40.0% | |
| AATGGGGAAAGTAAAAAGCC+AGG | + | chr5_3:68993056-68993075 | None:intergenic | 40.0% | |
| TCTAGTTGACGTGAGATATC+TGG | - | chr5_3:68993323-68993342 | Msa0827620:intron | 40.0% | |
| CTCAATTCCTATGTGAGAAG+CGG | + | chr5_3:68993355-68993374 | None:intergenic | 40.0% | |
| !!! | GAAAGATTTTCTGGAACAGC+TGG | - | chr5_3:68993580-68993599 | Msa0827620:intron | 40.0% |
| !! | TGGCCTTAGATTTTGAAAGC+TGG | - | chr5_3:68993705-68993724 | Msa0827620:intron | 40.0% |
| GTCTTGAGAGTTTGAAGGAA+AGG | - | chr5_3:68993790-68993809 | Msa0827620:intron | 40.0% | |
| TAACAACAGCATGTATGACG+CGG | + | chr5_3:68993820-68993839 | None:intergenic | 40.0% | |
| ACAATGATAAAGGCTCAAGC+TGG | - | chr5_3:68993992-68994011 | Msa0827620:intron | 40.0% | |
| !! | AACAAGAGCATCATCCAAAG+TGG | - | chr5_3:68994040-68994059 | Msa0827620:intron | 40.0% |
| CAATATGGTTCGAACCACTT+TGG | + | chr5_3:68994057-68994076 | None:intergenic | 40.0% | |
| TGAGTCGTATCTTACAACCA+GGG | + | chr5_3:68994174-68994193 | None:intergenic | 40.0% | |
| ATGAGTCGTATCTTACAACC+AGG | + | chr5_3:68994175-68994194 | None:intergenic | 40.0% | |
| GTAAGAAGAAGCAGCTCTGT+GGG | + | chr5_3:68992003-68992022 | None:intergenic | 45.0% | |
| CACAGAGCTGCTTCTTCTTA+CGG | - | chr5_3:68992002-68992021 | Msa0827620:CDS | 45.0% | |
| CCATGGGATCAATACGCAAT+TGG | + | chr5_3:68992185-68992204 | None:intergenic | 45.0% | |
| ! | CCAATTGCGTATTGATCCCA+TGG | - | chr5_3:68992182-68992201 | Msa0827620:intron | 45.0% |
| AGTTCATCGTCCAAGTCCAT+GGG | + | chr5_3:68992201-68992220 | None:intergenic | 45.0% | |
| GTCTTCATACCCAAGTCAGA+AGG | - | chr5_3:68992226-68992245 | Msa0827620:intron | 45.0% | |
| GATTGAACCCTCGGATTACT+CGG | + | chr5_3:68992412-68992431 | None:intergenic | 45.0% | |
| AAATAGGCGCCACAAGTGAA+CGG | + | chr5_3:68992438-68992457 | None:intergenic | 45.0% | |
| ATTGAACGTGAGACCTTGAG+AGG | - | chr5_3:68992522-68992541 | Msa0827620:CDS | 45.0% | |
| GCAGTGCACGTAAAAATGCA+AGG | + | chr5_3:68992810-68992829 | None:intergenic | 45.0% | |
| AGTACTGCACAAGAAATGGG+CGG | - | chr5_3:68992863-68992882 | Msa0827620:intron | 45.0% | |
| TACAGGTTGCTGAGGAGATA+GGG | - | chr5_3:68993540-68993559 | Msa0827620:intron | 45.0% | |
| TGAAAGCTGGATCTTGTGGA+AGG | - | chr5_3:68993718-68993737 | Msa0827620:intron | 45.0% | |
| TGTGGGTCTTGAGAGTTTGA+AGG | - | chr5_3:68993785-68993804 | Msa0827620:intron | 45.0% | |
| ! | AGAATTTAAAGCCAGCTCCC+TGG | - | chr5_3:68994154-68994173 | Msa0827620:five_prime_UTR | 45.0% |
| !!! | ATTATTTTATTATACAATTA+GGG | - | chr5_3:68993745-68993764 | Msa0827620:intron | 5.0% |
| TGGGAATTGGCGGCCATAAT+TGG | + | chr5_3:68991984-68992003 | None:intergenic | 50.0% | |
| AGAAGCAGCTCTGTGGGAAT+TGG | + | chr5_3:68991997-68992016 | None:intergenic | 50.0% | |
| CGTAAGAAGAAGCAGCTCTG+TGG | + | chr5_3:68992004-68992023 | None:intergenic | 50.0% | |
| AGAGCTGCTTCTTCTTACGG+CGG | - | chr5_3:68992005-68992024 | Msa0827620:CDS | 50.0% | |
| ACGCAATTGGATCTCATCGG+AGG | + | chr5_3:68992172-68992191 | None:intergenic | 50.0% | |
| ! | GCGTATTGATCCCATGGACT+TGG | - | chr5_3:68992188-68992207 | Msa0827620:intron | 50.0% |
| GAGTTCATCGTCCAAGTCCA+TGG | + | chr5_3:68992202-68992221 | None:intergenic | 50.0% | |
| GACTTGGACGATGAACTCAC+TGG | - | chr5_3:68992204-68992223 | Msa0827620:intron | 50.0% | |
| CCTCGGATTACTCGGTCTTT+GGG | + | chr5_3:68992404-68992423 | None:intergenic | 50.0% | |
| CCAAAGACCGAGTAATCCGA+GGG | - | chr5_3:68992402-68992421 | Msa0827620:intron | 50.0% | |
| TCAATCCCACCGTTCACTTG+TGG | - | chr5_3:68992426-68992445 | Msa0827620:intron | 50.0% | |
| TGCCAATTTGGGCATGCTAG+TGG | + | chr5_3:68992495-68992514 | None:intergenic | 50.0% | |
| TAGCATGCCCAAATTGGCAC+TGG | - | chr5_3:68992496-68992515 | Msa0827620:intron | 50.0% | |
| AGCATGCCCAAATTGGCACT+GGG | - | chr5_3:68992497-68992516 | Msa0827620:intron | 50.0% | |
| ATGTCCAAGCCAACACCATC+AGG | - | chr5_3:68992548-68992567 | Msa0827620:CDS | 50.0% | |
| GACAGTACCGCTTCTCACAT+AGG | - | chr5_3:68993345-68993364 | Msa0827620:intron | 50.0% | |
| ! | AGTTCTGGTACAGGTTGCTG+AGG | - | chr5_3:68993532-68993551 | Msa0827620:intron | 50.0% |
| GTACAGGTTGCTGAGGAGAT+AGG | - | chr5_3:68993539-68993558 | Msa0827620:intron | 50.0% | |
| GTATCTTACAACCAGGGAGC+TGG | + | chr5_3:68994168-68994187 | None:intergenic | 50.0% | |
| AGCAGCTCTGTGGGAATTGG+CGG | + | chr5_3:68991994-68992013 | None:intergenic | 55.0% | |
| ! | GATGGACTTAGTACCCGACC+CGG | - | chr5_3:68992141-68992160 | Msa0827620:intron | 55.0% |
| GGATTACTCGGTCTTTGGGC+CGG | + | chr5_3:68992400-68992419 | None:intergenic | 55.0% | |
| CCCAAAGACCGAGTAATCCG+AGG | - | chr5_3:68992401-68992420 | Msa0827620:intron | 55.0% | |
| CCCTCGGATTACTCGGTCTT+TGG | + | chr5_3:68992405-68992424 | None:intergenic | 55.0% | |
| GAACGGTGGGATTGAACCCT+CGG | + | chr5_3:68992421-68992440 | None:intergenic | 55.0% | |
| CGCCACTAGCATGCCCAAAT+TGG | - | chr5_3:68992490-68992509 | Msa0827620:intron | 55.0% | |
| GCTTGGACATGCTCCTCTCA+AGG | + | chr5_3:68992538-68992557 | None:intergenic | 55.0% | |
| !! | TTGGCCTGATGGTGTTGGCT+TGG | + | chr5_3:68992555-68992574 | None:intergenic | 55.0% |
| !! | TTGGGTTGGCCTGATGGTGT+TGG | + | chr5_3:68992560-68992579 | None:intergenic | 55.0% |
| ACACCATCAGGCCAACCCAA+AGG | - | chr5_3:68992560-68992579 | Msa0827620:intron | 55.0% | |
| CACCATCAGGCCAACCCAAA+GGG | - | chr5_3:68992561-68992580 | Msa0827620:intron | 55.0% | |
| !! | AACCCTTTGGGTTGGCCTGA+TGG | + | chr5_3:68992566-68992585 | None:intergenic | 55.0% |
| GCGCTGTCCCTTTCCGATCA+AGG | - | chr5_3:68992027-68992046 | Msa0827620:CDS | 60.0% | |
| ACTTAGTACCCGACCCGGTG+CGG | - | chr5_3:68992146-68992165 | Msa0827620:intron | 60.0% | |
| AGGCGCCACAAGTGAACGGT+GGG | + | chr5_3:68992434-68992453 | None:intergenic | 60.0% | |
| TAGGCGCCACAAGTGAACGG+TGG | + | chr5_3:68992435-68992454 | None:intergenic | 60.0% | |
| ATCTCATCGGAGGCCGCACC+GGG | + | chr5_3:68992162-68992181 | None:intergenic | 65.0% | |
| GATCTCATCGGAGGCCGCAC+CGG | + | chr5_3:68992163-68992182 | None:intergenic | 65.0% | |
| ATCGGAGGCCGCACCGGGTC+GGG | + | chr5_3:68992157-68992176 | None:intergenic | 75.0% | |
| CATCGGAGGCCGCACCGGGT+CGG | + | chr5_3:68992158-68992177 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 68991810 | 68994302 | 68991810 | ID=Msa0827620;Name=Msa0827620 |
| chr5_3 | mRNA | 68991810 | 68994302 | 68991810 | ID=Msa0827620-mRNA-1;Parent=Msa0827620;Name=Msa0827620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=177|1|1|1|1|1|4|155|132 |
| chr5_3 | exon | 68991810 | 68992126 | 68991810 | ID=Msa0827620-mRNA-1:exon:21705;Parent=Msa0827620-mRNA-1 |
| chr5_3 | exon | 68992511 | 68992567 | 68992511 | ID=Msa0827620-mRNA-1:exon:21704;Parent=Msa0827620-mRNA-1 |
| chr5_3 | exon | 68993855 | 68993972 | 68993855 | ID=Msa0827620-mRNA-1:exon:21703;Parent=Msa0827620-mRNA-1 |
| chr5_3 | exon | 68994064 | 68994302 | 68994064 | ID=Msa0827620-mRNA-1:exon:21702;Parent=Msa0827620-mRNA-1 |
| chr5_3 | five_prime_UTR | 68994126 | 68994302 | 68994126 | ID=Msa0827620-mRNA-1:five_prime_utr;Parent=Msa0827620-mRNA-1 |
| chr5_3 | CDS | 68994064 | 68994125 | 68994064 | ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1 |
| chr5_3 | CDS | 68993855 | 68993972 | 68993855 | ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1 |
| chr5_3 | CDS | 68992511 | 68992567 | 68992511 | ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1 |
| chr5_3 | CDS | 68991965 | 68992126 | 68991965 | ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1 |
| chr5_3 | three_prime_UTR | 68991810 | 68991964 | 68991810 | ID=Msa0827620-mRNA-1:three_prime_utr;Parent=Msa0827620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
