AlfalfaGEDB | Msa0827620

M. sativa cultivar zhongmu-4 / Msa0827620

KEGG: K08505
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006873 GO:0006875 GO:0006883 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0030003 GO:0030004 GO:0042592 GO:0043181 GO:0043182 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0048878 GO:0050789 GO:0050801 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055078 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0080134 GO:0098771 GO:1901000 GO:1901002
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827620	XP_003615238.1	99.242	132	1	0	1	132	1	132	7.98e-94	276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827620	sp\|Q8VXX9\|BETL1_ARATH	67.153	137	40	2	1	132	1	137	3.68e-66	199

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827620	G7KBG1	99.242	132	1	0	1	132	1	132	3.81e-94	276

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0038350	Msa0827620	0.814911	1.210162e-51	-8.615850e-47
Msa0101320	Msa0827620	0.837320	5.573332e-57	-8.615850e-47
Msa0168100	Msa0827620	-0.801962	7.030277e-49	-8.615850e-47
Msa0196130	Msa0827620	0.817736	2.824383e-52	-8.615850e-47
Msa0197230	Msa0827620	-0.804545	2.052118e-49	-8.615850e-47
Msa0200950	Msa0827620	0.806301	8.793282e-50	-8.615850e-47
Msa0254290	Msa0827620	-0.811956	5.402136e-51	-8.615850e-47
Msa0258670	Msa0827620	0.801909	7.208430e-49	-8.615850e-47
Msa0289890	Msa0827620	-0.811686	6.183763e-51	-8.615850e-47
Msa0358170	Msa0827620	-0.800940	1.138291e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827620	MtrunA17_Chr5g0427101	99.242	132	1	0	1	132	1	132	7.34e-98	276
Msa0827620	MtrunA17_Chr3g0132601	75.758	132	30	2	3	132	2	133	1.14e-70	208

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0827620	AT4G14600.1	67.153	137	40	2	1	132	1	137	3.74e-67	199
Msa0827620	AT1G29060.1	64.925	134	45	1	1	132	1	134	1.03e-56	173
Msa0827620	AT1G29060.2	66.667	90	30	0	43	132	4	93	7.77e-37	121

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Find 49 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATAACATGAACAATA+TGG	0.361569	5_3:+68992021	None:intergenic
AACAAGAGCATCATCCAAAG+TGG	0.604677	5_3:-68992050	Msa0827620:CDS
AATACGCAATTGGATCTCAT+CGG	0.630316	5_3:+68993918	None:intergenic
ACAATGATAAAGGCTCAAGC+TGG	0.557678	5_3:-68992098	Msa0827620:CDS
ACAGCAAATGACAATGATAA+AGG	0.408664	5_3:-68992108	Msa0827620:intron
ACGCAATTGGATCTCATCGG+AGG	0.679188	5_3:+68993921	None:intergenic
ACTTAGTACCCGACCCGGTG+CGG	0.648119	5_3:-68993944	Msa0827620:CDS
AGAAGCAGCTCTGTGGGAAT+TGG	0.410252	5_3:+68994096	None:intergenic
AGAATTTAAAGCCAGCTCCC+TGG	0.550454	5_3:-68991936	Msa0827620:three_prime_UTR
AGAGATACCTTGATCGGAAA+GGG	0.490033	5_3:+68994056	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAATGACAAACAATTTGGA+GGG	+	chr5_3:68991845-68991864	None:intergenic	30.0%
ATCAATGACAAACAATTTGG+AGG	+	chr5_3:68991846-68991865	None:intergenic	30.0%
GATTAACCAACAAGTCAATT+TGG	-	chr5_3:68991867-68991886	Msa0827620:three_prime_UTR	30.0%
GGTTTCATTTCTTCCAATTA+TGG	-	chr5_3:68991968-68991987	Msa0827620:CDS	30.0%
AACGATGAATTGAAATTCGA+AGG	+	chr5_3:68992069-68992088	None:intergenic	30.0%
GATTACTGAATTGTATGTGT+TGG	-	chr5_3:68992105-68992124	Msa0827620:CDS	30.0%
ATAACAAGTCCAAAGTGAAA+GGG	+	chr5_3:68992285-68992304	None:intergenic	30.0%
AATAACAAGTCCAAAGTGAA+AGG	+	chr5_3:68992286-68992305	None:intergenic	30.0%
TATCTTATGCAAAACCCTTT+GGG	+	chr5_3:68992578-68992597	None:intergenic	30.0%
TTATCTTATGCAAAACCCTT+TGG	+	chr5_3:68992579-68992598	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	68991810	68994302	68991810	ID=Msa0827620;Name=Msa0827620
chr5_3	mRNA	68991810	68994302	68991810	ID=Msa0827620-mRNA-1;Parent=Msa0827620;Name=Msa0827620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=177\|1\|1\|1\|1\|1\|4\|155\|132
chr5_3	exon	68991810	68992126	68991810	ID=Msa0827620-mRNA-1:exon:21705;Parent=Msa0827620-mRNA-1
chr5_3	exon	68992511	68992567	68992511	ID=Msa0827620-mRNA-1:exon:21704;Parent=Msa0827620-mRNA-1
chr5_3	exon	68993855	68993972	68993855	ID=Msa0827620-mRNA-1:exon:21703;Parent=Msa0827620-mRNA-1
chr5_3	exon	68994064	68994302	68994064	ID=Msa0827620-mRNA-1:exon:21702;Parent=Msa0827620-mRNA-1
chr5_3	five_prime_UTR	68994126	68994302	68994126	ID=Msa0827620-mRNA-1:five_prime_utr;Parent=Msa0827620-mRNA-1
chr5_3	CDS	68994064	68994125	68994064	ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1
chr5_3	CDS	68993855	68993972	68993855	ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1
chr5_3	CDS	68992511	68992567	68992511	ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1
chr5_3	CDS	68991965	68992126	68991965	ID=Msa0827620-mRNA-1:cds;Parent=Msa0827620-mRNA-1
chr5_3	three_prime_UTR	68991810	68991964	68991810	ID=Msa0827620-mRNA-1:three_prime_utr;Parent=Msa0827620-mRNA-1

Gene Sequence

>Msa0827620

ATGGCCGCCAATTCCCACAGAGCTGCTTCTTCTTACGGCGGCGCTGTCCCTTTCCGATCAAGAGATGGACTTAGTACCCGACCCGGTGCGGCCTCCGATGAGATCCAATTGCGTATTGATCCCATGGACTTGGACGATGAACTCACTGGTCTTCATACCCAAGTCAGAAGGTTGAAAAATGTTGCTGAGGAGATAGGGACAGAAATGAAGTATCAGAAAGATTTTCTGGAACAGCTGCAAATGACAATGATAAAGGCTCAAGCTGGAGTGAAGAATAACCTAAGAAGATTGAACAAGAGCATCATCCAAAGTGGTTCGAACCATATTGTTCATGTTATTTGTTTTGCTTTAATTTGTTTCTTTGTGGTTTACTTTTGGTCTAAAATGTCTAGAAAATGA

Protein sequence

>Msa0827620

MAANSHRAASSYGGAVPFRSRDGLSTRPGAASDEIQLRIDPMDLDDELTGLHTQVRRLKNVAEEIGTEMKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVICFALICFFVVYFWSKMSRK*