AlfalfaGEDB | Msa0254290

M. sativa cultivar zhongmu-4 / Msa0254290

KEGG: K16055
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701
PFAM: PF00982.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254290	XP_013464515.1	94.813	482	2	1	1	482	501	959	0.0	939

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254290	sp\|Q9SYM4\|TPS1_ARATH	65.182	494	130	6	1	479	470	936	0.0	629

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254290	A0A072VK67	94.813	482	2	1	1	482	501	959	0.0	939

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0165430	Msa0254290	0.814732	1.326108e-51	-8.615850e-47
Msa0168100	Msa0254290	0.803511	3.366929e-49	-8.615850e-47
Msa0217400	Msa0254290	0.805155	1.530202e-49	-8.615850e-47
Msa0254290	Msa0257250	0.815193	1.047790e-51	-8.615850e-47
Msa0254290	Msa0293480	0.854727	1.015311e-61	-8.615850e-47
Msa0254290	Msa0294950	0.801288	9.665961e-49	-8.615850e-47
Msa0254290	Msa0304740	0.817880	2.621439e-52	-8.615850e-47
Msa0254290	Msa0331590	0.811898	5.559880e-51	-8.615850e-47
Msa0254290	Msa0333720	-0.802456	5.562609e-49	-8.615850e-47
Msa0254290	Msa0335040	0.809965	1.457621e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254290	MtrunA17_Chr2g0314621	94.606	482	2	2	1	482	501	958	0.0	932
Msa0254290	MtrunA17_Chr8g0359371	71.488	484	107	6	1	479	462	919	0.0	689
Msa0254290	MtrunA17_Chr8g0380061	60.692	491	150	8	1	482	61	517	0.0	582
Msa0254290	MtrunA17_Chr1g0161531	31.026	390	198	14	1	358	450	800	2.33e-45	169
Msa0254290	MtrunA17_Chr4g0041381	29.124	388	208	12	1	359	450	799	4.82e-44	166
Msa0254290	MtrunA17_Chr8g0364961	30.077	389	203	12	1	358	437	787	6.07e-44	165
Msa0254290	MtrunA17_Chr1g0209251	29.974	387	204	11	1	357	443	792	1.77e-43	164
Msa0254290	MtrunA17_Chr4g0073041	29.306	389	205	12	1	358	443	792	2.06e-43	164
Msa0254290	MtrunA17_Chr8g0391971	29.381	388	206	13	1	358	450	799	3.52e-40	154
Msa0254290	MtrunA17_Chr3g0117891	28.021	389	211	13	1	358	362	712	9.21e-40	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0254290	AT1G78580.4	65.182	494	130	6	1	479	470	936	0.0	629
Msa0254290	AT1G78580.1	65.182	494	130	6	1	479	470	936	0.0	629
Msa0254290	AT1G78580.2	65.182	494	130	6	1	479	470	936	0.0	629
Msa0254290	AT1G78580.3	65.182	494	130	6	1	479	470	936	0.0	629
Msa0254290	AT1G16980.1	59.834	361	118	3	1	361	390	723	1.41e-148	445
Msa0254290	AT4G27550.2	59.673	367	117	5	1	363	381	720	2.19e-147	441
Msa0254290	AT4G27550.1	58.511	376	116	6	1	363	381	729	7.11e-145	434
Msa0254290	AT1G16980.2	53.036	247	90	2	1	247	390	610	7.57e-82	267
Msa0254290	AT1G06410.3	29.064	406	218	11	1	380	441	802	3.10e-46	172
Msa0254290	AT1G06410.1	29.064	406	218	11	1	380	441	802	3.10e-46	172

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Find 118 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTAAGCTATTAGCA+AGG	0.577755	2_2:-47134398	Msa0254290:five_prime_UTR
AAAGCTTAAGCTATTAGCAA+GGG	0.584578	2_2:-47134397	Msa0254290:five_prime_UTR
AAAGGGAAGCTTCCCTTGTA+TGG	0.415736	2_2:-47129639	Msa0254290:CDS
AACCCACACTGCACAGGAAT+GGG	0.466931	2_2:-47132226	Msa0254290:CDS
AACCTAGTAGTTCGCAAAGA+TGG	0.468014	2_2:+47129948	None:intergenic
AACTAATCGATTGCTTATTT+TGG	0.140569	2_2:-47131648	Msa0254290:intron
AAGAGAGAGAGAAGCGACAT+AGG	0.520818	2_2:-47132269	Msa0254290:CDS
AAGCTTAAGCTATTAGCAAG+GGG	0.648897	2_2:-47134396	Msa0254290:five_prime_UTR
AAGTCAGCAAATCAAAGCAA+GGG	0.617111	2_2:-47128854	Msa0254290:CDS
AATGCCAGAACAACTAAACA+TGG	0.615721	2_2:-47129820	Msa0254290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTTAAGCTATTAGCA+AGG	-	chr2_2:47128480-47128499	Msa0254290:three_prime_UTR	30.0%
AAAGCTTAAGCTATTAGCAA+GGG	-	chr2_2:47128481-47128500	Msa0254290:three_prime_UTR	30.0%
TTGATCTGTTAATATGACAG+TGG	+	chr2_2:47128526-47128545	None:intergenic	30.0%
TTAAATCTCATCAAGTGATC+TGG	-	chr2_2:47128726-47128745	Msa0254290:CDS	30.0%
AACAAAAGTTCATCGAAAAC+TGG	-	chr2_2:47128990-47129009	Msa0254290:CDS	30.0%
CATTAATATTGGATATCTGC+AGG	-	chr2_2:47129198-47129217	Msa0254290:intron	30.0%
TTCATGTACTGTGATAAAAG+TGG	-	chr2_2:47129818-47129837	Msa0254290:CDS	30.0%
TATATATTGGGCATAGATGA+AGG	-	chr2_2:47130051-47130070	Msa0254290:CDS	30.0%
ATATGCTATAAGCAGAAAAC+CGG	+	chr2_2:47130217-47130236	None:intergenic	30.0%
TGGATTTGACATCTGATATT+TGG	-	chr2_2:47130469-47130488	Msa0254290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	47128372	47134528	47128372	ID=Msa0254290;Name=Msa0254290
chr2_2	mRNA	47128372	47134528	47128372	ID=Msa0254290-mRNA-1;Parent=Msa0254290;Name=Msa0254290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=339\|0.88\|0.8\|1\|1\|1\|10\|244\|485
chr2_2	exon	47128372	47129020	47128372	ID=Msa0254290-mRNA-1:exon:14374;Parent=Msa0254290-mRNA-1
chr2_2	exon	47129208	47129306	47129208	ID=Msa0254290-mRNA-1:exon:14373;Parent=Msa0254290-mRNA-1
chr2_2	exon	47129410	47129540	47129410	ID=Msa0254290-mRNA-1:exon:14372;Parent=Msa0254290-mRNA-1
chr2_2	exon	47129623	47129710	47129623	ID=Msa0254290-mRNA-1:exon:14371;Parent=Msa0254290-mRNA-1
chr2_2	exon	47129800	47130159	47129800	ID=Msa0254290-mRNA-1:exon:14370;Parent=Msa0254290-mRNA-1
chr2_2	exon	47131649	47131766	47131649	ID=Msa0254290-mRNA-1:exon:14369;Parent=Msa0254290-mRNA-1
chr2_2	exon	47132210	47132397	47132210	ID=Msa0254290-mRNA-1:exon:14368;Parent=Msa0254290-mRNA-1
chr2_2	exon	47132539	47132639	47132539	ID=Msa0254290-mRNA-1:exon:14367;Parent=Msa0254290-mRNA-1
chr2_2	exon	47133632	47133680	47133632	ID=Msa0254290-mRNA-1:exon:14366;Parent=Msa0254290-mRNA-1
chr2_2	exon	47134271	47134528	47134271	ID=Msa0254290-mRNA-1:exon:14365;Parent=Msa0254290-mRNA-1
chr2_2	five_prime_UTR	47134271	47134528	47134271	ID=Msa0254290-mRNA-1:five_prime_utr;Parent=Msa0254290-mRNA-1
chr2_2	five_prime_UTR	47133632	47133680	47133632	ID=Msa0254290-mRNA-1:five_prime_utr;Parent=Msa0254290-mRNA-1
chr2_2	five_prime_UTR	47132608	47132639	47132608	ID=Msa0254290-mRNA-1:five_prime_utr;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47132539	47132607	47132539	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47132210	47132397	47132210	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47131649	47131766	47131649	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47129800	47130159	47129800	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47129623	47129710	47129623	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47129410	47129540	47129410	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47129208	47129306	47129208	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	CDS	47128616	47129020	47128616	ID=Msa0254290-mRNA-1:cds;Parent=Msa0254290-mRNA-1
chr2_2	three_prime_UTR	47128372	47128615	47128372	ID=Msa0254290-mRNA-1:three_prime_utr;Parent=Msa0254290-mRNA-1

Gene Sequence

>Msa0254290

ATGAATCTTGTCAGTTACGAGTTTGTAGCCTGTCAAGAAAAAAAGAAGGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCGCAGTCTCTTGGGGCTGGGGCACTTCTGGTCAACCCCTGGAACATCTCAAAAGTTGCCGAAGCAATTGCCAAAGCTCTGAACATGCCATCAGAAGAGAGAGAGAAGCGACATAGGCACAACTTCCATCATGTAACAACCCACACTGCACAGGAATGGGCAGAAACTTTTGTGAGCGAGCTAAATGATACTGTTGTTGAGGCACAGTTAAGGACAAAACAAGTTCCACCACGGCTCGATACCAGGAAGACAATTCAACAATATCTGAAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACTTTAACTGAGCAAGTTGAGAGAAAAGGTGATCAACTGAAAGAAATGGAACTCTCAGTCCATCCAGAATTGAAACAACCGTTGACACAACTTTGCAATGACCCAAATACTACAGTTGTCGTTCTTAGTGGAAGTGGCAGAACACTTCTAGATGAAGTAATTCTCTATACATTACTTCCATCTTTGCGAACTACTAGGTTCACTTCTAACTTGTTGTTATTACAGAACTTCAAAGAATATAACACTTGGCTAGCAGCAGAGAATGGGATGTTTTTAAACCCTTCAAATGGAGAATGGATGACCACAATGCCAGAACAACTAAACATGGAATGGGTTGACAGTGTAAAGCATATTTTTGAATACTTCACTGAAAGAACTCCTCGGTCGTATTTTGAAGAAAGGGAAGCTTCCCTTGTATGGAATTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTCCAACATCTCTGCACAGGTCCAATTTCAAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCAGTTGAGGTGCGAGCTGCTGGTGTTACAAAGGGAGCAGCCATTGATCGCATCCTGGGGGAGATTGTTCACAGTAAATCGATGACTACACCAATTGATTATGTTCTATGTATAGGACATTTTCTGGCAAAGCAGGATGAAGATATATATGACTTTTTTGAGCCAGAGCCTTCTTCTTTTGGTGCAAGTCTTCAGCGAAGCAAGTTGTCAGATGCAGCTAAGTTTCCCAATGAGAAGGTATCACCTATGAAGATCCCATCAATTAAAAATGGATTCAAGTCAGCAAATCAAAGCAAGGGACAGCGACCTATCTCAAATTCAGAGAAGAAAACAGCAAATAATGTCAACCGCACGGCACGGAAGTGTAAATCACCTTTGCCAGAAAAGATCTCTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCGTGTGCTGTTGGAAGAATTCAAACAAATGCTCGATTTACACTTCCATCGTCTGACGAGGTTGCTGAATTTCTGAAGAAACTTGCACATGCATCTTGTGATTACTGA

Protein sequence

>Msa0254290

MNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNISKVAEAIAKALNMPSEEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLDTRKTIQQYLKSTNRLLILGFNGTLTEQVERKGDQLKEMELSVHPELKQPLTQLCNDPNTTVVVLSGSGRTLLDEVILYTLLPSLRTTRFTSNLLLLQNFKEYNTWLAAENGMFLNPSNGEWMTTMPEQLNMEWVDSVKHIFEYFTERTPRSYFEEREASLVWNYRHADVEFGKLQARDMLQHLCTGPISNASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLAKQDEDIYDFFEPEPSSFGASLQRSKLSDAAKFPNEKVSPMKIPSIKNGFKSANQSKGQRPISNSEKKTANNVNRTARKCKSPLPEKISWNVLDLKKENYFSCAVGRIQTNARFTLPSSDEVAEFLKKLAHASCDY*