Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490390 | XP_003601314.1 | 96.277 | 376 | 14 | 0 | 1 | 376 | 1 | 376 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490390 | sp|Q5B998|DHOM_EMENI | 41.176 | 289 | 153 | 7 | 99 | 371 | 77 | 364 | 1.03e-54 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490390 | B7FM35 | 96.277 | 376 | 14 | 0 | 1 | 376 | 1 | 376 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0490390 | 0.802976 | 4.345430e-49 | -8.615850e-47 |
| Msa0016670 | Msa0490390 | 0.807291 | 5.431570e-50 | -8.615850e-47 |
| Msa0017510 | Msa0490390 | 0.868538 | 6.059680e-66 | -8.615850e-47 |
| Msa0027230 | Msa0490390 | 0.802459 | 5.555337e-49 | -8.615850e-47 |
| Msa0028420 | Msa0490390 | 0.810548 | 1.091469e-50 | -8.615850e-47 |
| Msa0028640 | Msa0490390 | 0.818206 | 2.212752e-52 | -8.615850e-47 |
| Msa0031340 | Msa0490390 | 0.811497 | 6.797240e-51 | -8.615850e-47 |
| Msa0046100 | Msa0490390 | 0.813783 | 2.149328e-51 | -8.615850e-47 |
| Msa0050390 | Msa0490390 | 0.805989 | 1.022729e-49 | -8.615850e-47 |
| Msa0071380 | Msa0490390 | -0.808122 | 3.616725e-50 | -8.615850e-47 |
| Msa0075220 | Msa0490390 | 0.812484 | 4.142589e-51 | -8.615850e-47 |
| Msa0089380 | Msa0490390 | 0.811197 | 7.898032e-51 | -8.615850e-47 |
| Msa0089630 | Msa0490390 | 0.844973 | 5.425915e-59 | -8.615850e-47 |
| Msa0101810 | Msa0490390 | -0.821109 | 4.808204e-53 | -8.615850e-47 |
| Msa0110970 | Msa0490390 | 0.848797 | 4.873677e-60 | -8.615850e-47 |
| Msa0124060 | Msa0490390 | 0.806397 | 8.391682e-50 | -8.615850e-47 |
| Msa0139060 | Msa0490390 | 0.801482 | 8.820255e-49 | -8.615850e-47 |
| Msa0140780 | Msa0490390 | 0.823474 | 1.358661e-53 | -8.615850e-47 |
| Msa0146260 | Msa0490390 | 0.824262 | 8.877540e-54 | -8.615850e-47 |
| Msa0157290 | Msa0490390 | 0.868947 | 4.468136e-66 | -8.615850e-47 |
| Msa0165210 | Msa0490390 | 0.808537 | 2.950338e-50 | -8.615850e-47 |
| Msa0167520 | Msa0490390 | 0.802079 | 6.650157e-49 | -8.615850e-47 |
| Msa0168500 | Msa0490390 | 0.811875 | 5.625299e-51 | -8.615850e-47 |
| Msa0175780 | Msa0490390 | 0.807774 | 4.289701e-50 | -8.615850e-47 |
| Msa0182620 | Msa0490390 | -0.809910 | 1.498209e-50 | -8.615850e-47 |
| Msa0197230 | Msa0490390 | 0.820206 | 7.751272e-53 | -8.615850e-47 |
| Msa0200260 | Msa0490390 | 0.810205 | 1.294328e-50 | -8.615850e-47 |
| Msa0212990 | Msa0490390 | 0.809716 | 1.649437e-50 | -8.615850e-47 |
| Msa0215320 | Msa0490390 | -0.808026 | 3.790666e-50 | -8.615850e-47 |
| Msa0237230 | Msa0490390 | 0.802205 | 6.265121e-49 | -8.615850e-47 |
| Msa0392510 | Msa0490390 | 0.822222 | 2.659423e-53 | -8.615850e-47 |
| Msa0395790 | Msa0490390 | 0.843360 | 1.470349e-58 | -8.615850e-47 |
| Msa0397750 | Msa0490390 | 0.811471 | 6.887156e-51 | -8.615850e-47 |
| Msa0410500 | Msa0490390 | 0.809447 | 1.883736e-50 | -8.615850e-47 |
| Msa0410650 | Msa0490390 | 0.815615 | 8.444229e-52 | -8.615850e-47 |
| Msa0417270 | Msa0490390 | 0.805836 | 1.101177e-49 | -8.615850e-47 |
| Msa0417880 | Msa0490390 | 0.825928 | 3.587742e-54 | -8.615850e-47 |
| Msa0420960 | Msa0490390 | 0.807186 | 5.715073e-50 | -8.615850e-47 |
| Msa0422850 | Msa0490390 | 0.807202 | 5.672708e-50 | -8.615850e-47 |
| Msa0422930 | Msa0490390 | 0.807359 | 5.252832e-50 | -8.615850e-47 |
| Msa0428590 | Msa0490390 | 0.833961 | 3.946184e-56 | -8.615850e-47 |
| Msa0436050 | Msa0490390 | 0.803475 | 3.425254e-49 | -8.615850e-47 |
| Msa0443260 | Msa0490390 | 0.818999 | 1.462201e-52 | -8.615850e-47 |
| Msa0457470 | Msa0490390 | 0.800445 | 1.436333e-48 | -8.615850e-47 |
| Msa0461720 | Msa0490390 | 0.806398 | 8.386078e-50 | -8.615850e-47 |
| Msa0467060 | Msa0490390 | 0.808494 | 3.012566e-50 | -8.615850e-47 |
| Msa0243100 | Msa0490390 | 0.825417 | 4.742201e-54 | -8.615850e-47 |
| Msa0244860 | Msa0490390 | 0.800551 | 1.366713e-48 | -8.615850e-47 |
| Msa0260760 | Msa0490390 | 0.800433 | 1.444732e-48 | -8.615850e-47 |
| Msa0261340 | Msa0490390 | 0.805091 | 1.578164e-49 | -8.615850e-47 |
| Msa0283450 | Msa0490390 | 0.809702 | 1.660538e-50 | -8.615850e-47 |
| Msa0287650 | Msa0490390 | 0.826480 | 2.650238e-54 | -8.615850e-47 |
| Msa0291540 | Msa0490390 | 0.821415 | 4.087718e-53 | -8.615850e-47 |
| Msa0292400 | Msa0490390 | 0.818187 | 2.234479e-52 | -8.615850e-47 |
| Msa0300690 | Msa0490390 | 0.800204 | 1.608323e-48 | -8.615850e-47 |
| Msa0308830 | Msa0490390 | 0.812526 | 4.056262e-51 | -8.615850e-47 |
| Msa0316810 | Msa0490390 | 0.811111 | 8.244098e-51 | -8.615850e-47 |
| Msa0317920 | Msa0490390 | 0.807440 | 5.049895e-50 | -8.615850e-47 |
| Msa0320740 | Msa0490390 | 0.829228 | 5.789497e-55 | -8.615850e-47 |
| Msa0323610 | Msa0490390 | 0.809280 | 2.045567e-50 | -8.615850e-47 |
| Msa0330340 | Msa0490390 | 0.809468 | 1.863887e-50 | -8.615850e-47 |
| Msa0332000 | Msa0490390 | 0.802036 | 6.787358e-49 | -8.615850e-47 |
| Msa0336040 | Msa0490390 | -0.837653 | 4.579016e-57 | -8.615850e-47 |
| Msa0338490 | Msa0490390 | 0.833785 | 4.367829e-56 | -8.615850e-47 |
| Msa0359030 | Msa0490390 | 0.810466 | 1.136720e-50 | -8.615850e-47 |
| Msa0487630 | Msa0490390 | 0.806812 | 6.858968e-50 | -8.615850e-47 |
| Msa0488560 | Msa0490390 | 0.801271 | 9.741526e-49 | -8.615850e-47 |
| Msa0490390 | Msa0495320 | 0.817303 | 3.537371e-52 | -8.615850e-47 |
| Msa0490390 | Msa0495330 | 0.805349 | 1.393350e-49 | -8.615850e-47 |
| Msa0490390 | Msa0498650 | 0.820402 | 6.990601e-53 | -8.615850e-47 |
| Msa0490390 | Msa0507440 | 0.805041 | 1.616753e-49 | -8.615850e-47 |
| Msa0490390 | Msa0507680 | 0.814152 | 1.781745e-51 | -8.615850e-47 |
| Msa0490390 | Msa0529890 | 0.801205 | 1.004717e-48 | -8.615850e-47 |
| Msa0490390 | Msa0546680 | 0.807659 | 4.537390e-50 | -8.615850e-47 |
| Msa0490390 | Msa0569200 | 0.832267 | 1.041814e-55 | -8.615850e-47 |
| Msa0490390 | Msa0574890 | 0.827462 | 1.543618e-54 | -8.615850e-47 |
| Msa0490390 | Msa0576690 | 0.806236 | 9.073524e-50 | -8.615850e-47 |
| Msa0490390 | Msa0576880 | 0.825074 | 5.714689e-54 | -8.615850e-47 |
| Msa0490390 | Msa0597330 | 0.805921 | 1.057006e-49 | -8.615850e-47 |
| Msa0490390 | Msa0615710 | 0.808344 | 3.243613e-50 | -8.615850e-47 |
| Msa0490390 | Msa0625720 | 0.801913 | 7.195105e-49 | -8.615850e-47 |
| Msa0490390 | Msa0627450 | 0.814977 | 1.170174e-51 | -8.615850e-47 |
| Msa0490390 | Msa0632400 | 0.805128 | 1.549921e-49 | -8.615850e-47 |
| Msa0490390 | Msa0639430 | 0.801194 | 1.010124e-48 | -8.615850e-47 |
| Msa0490390 | Msa0647130 | 0.808379 | 3.187738e-50 | -8.615850e-47 |
| Msa0490390 | Msa0657970 | 0.806685 | 7.296420e-50 | -8.615850e-47 |
| Msa0490390 | Msa0658240 | 0.825151 | 5.480514e-54 | -8.615850e-47 |
| Msa0490390 | Msa0669320 | 0.826136 | 3.200491e-54 | -8.615850e-47 |
| Msa0490390 | Msa0677410 | 0.814254 | 1.691588e-51 | -8.615850e-47 |
| Msa0490390 | Msa0681270 | 0.810485 | 1.126231e-50 | -8.615850e-47 |
| Msa0490390 | Msa0682330 | 0.810899 | 9.164129e-51 | -8.615850e-47 |
| Msa0490390 | Msa0683510 | 0.834235 | 3.371095e-56 | -8.615850e-47 |
| Msa0490390 | Msa0690520 | 0.800924 | 1.147062e-48 | -8.615850e-47 |
| Msa0490390 | Msa0703050 | 0.819607 | 1.062469e-52 | -8.615850e-47 |
| Msa0490390 | Msa0731940 | 0.800598 | 1.337171e-48 | -8.615850e-47 |
| Msa0490390 | Msa0741240 | 0.804842 | 1.778834e-49 | -8.615850e-47 |
| Msa0490390 | Msa0743720 | 0.819413 | 1.176894e-52 | -8.615850e-47 |
| Msa0490390 | Msa0749290 | 0.826521 | 2.591287e-54 | -8.615850e-47 |
| Msa0490390 | Msa0753720 | 0.805869 | 1.083674e-49 | -8.615850e-47 |
| Msa0490390 | Msa0754520 | 0.842908 | 1.940043e-58 | -8.615850e-47 |
| Msa0490390 | Msa0767300 | 0.808784 | 2.612638e-50 | -8.615850e-47 |
| Msa0490390 | Msa0769390 | 0.802982 | 4.332927e-49 | -8.615850e-47 |
| Msa0490390 | Msa0801760 | 0.816811 | 4.561032e-52 | -8.615850e-47 |
| Msa0490390 | Msa0824680 | 0.800494 | 1.404019e-48 | -8.615850e-47 |
| Msa0490390 | Msa0832370 | 0.816914 | 4.324728e-52 | -8.615850e-47 |
| Msa0490390 | Msa0833220 | 0.844561 | 7.006758e-59 | -8.615850e-47 |
| Msa0490390 | Msa0837600 | 0.804709 | 1.896638e-49 | -8.615850e-47 |
| Msa0490390 | Msa0843220 | 0.817664 | 2.932995e-52 | -8.615850e-47 |
| Msa0490390 | Msa0844560 | 0.812655 | 3.801486e-51 | -8.615850e-47 |
| Msa0490390 | Msa0844570 | 0.813736 | 2.200687e-51 | -8.615850e-47 |
| Msa0490390 | Msa0849100 | 0.802256 | 6.116734e-49 | -8.615850e-47 |
| Msa0490390 | Msa0850960 | 0.802165 | 6.385123e-49 | -8.615850e-47 |
| Msa0490390 | Msa0851060 | -0.800605 | 1.332359e-48 | -8.615850e-47 |
| Msa0490390 | Msa0861870 | 0.807260 | 5.512194e-50 | -8.615850e-47 |
| Msa0490390 | Msa0880140 | 0.866601 | 2.531269e-65 | -8.615850e-47 |
| Msa0490390 | Msa0898670 | 0.803793 | 2.942948e-49 | -8.615850e-47 |
| Msa0490390 | Msa0908050 | 0.814670 | 1.369133e-51 | -8.615850e-47 |
| Msa0490390 | Msa0910430 | 0.804557 | 2.039764e-49 | -8.615850e-47 |
| Msa0490390 | Msa0924540 | 0.808472 | 3.045031e-50 | -8.615850e-47 |
| Msa0490390 | Msa0925180 | 0.818470 | 1.927992e-52 | -8.615850e-47 |
| Msa0490390 | Msa0930780 | 0.823869 | 1.098041e-53 | -8.615850e-47 |
| Msa0490390 | Msa0938480 | 0.805432 | 1.339062e-49 | -8.615850e-47 |
| Msa0490390 | Msa0945110 | 0.813817 | 2.112536e-51 | -8.615850e-47 |
| Msa0490390 | Msa0947660 | 0.813002 | 3.190264e-51 | -8.615850e-47 |
| Msa0490390 | Msa0948290 | 0.811063 | 8.444020e-51 | -8.615850e-47 |
| Msa0490390 | Msa0959360 | 0.816067 | 6.694482e-52 | -8.615850e-47 |
| Msa0490390 | Msa0974070 | 0.804639 | 1.961728e-49 | -8.615850e-47 |
| Msa0490390 | Msa0995270 | 0.805654 | 1.202668e-49 | -8.615850e-47 |
| Msa0490390 | Msa1003620 | 0.803640 | 3.166150e-49 | -8.615850e-47 |
| Msa0490390 | Msa1014540 | 0.804939 | 1.698024e-49 | -8.615850e-47 |
| Msa0490390 | Msa1030970 | 0.817281 | 3.576663e-52 | -8.615850e-47 |
| Msa0490390 | Msa1046300 | 0.802088 | 6.621646e-49 | -8.615850e-47 |
| Msa0490390 | Msa1069990 | 0.811863 | 5.658020e-51 | -8.615850e-47 |
| Msa0490390 | Msa1075540 | 0.827050 | 1.937650e-54 | -8.615850e-47 |
| Msa0490390 | Msa1085200 | 0.809663 | 1.693235e-50 | -8.615850e-47 |
| Msa0490390 | Msa1085300 | 0.812996 | 3.200894e-51 | -8.615850e-47 |
| Msa0490390 | Msa1125000 | 0.801219 | 9.983122e-49 | -8.615850e-47 |
| Msa0490390 | Msa1137570 | 0.820645 | 6.148493e-53 | -8.615850e-47 |
| Msa0490390 | Msa1151910 | 0.826105 | 3.255186e-54 | -8.615850e-47 |
| Msa0490390 | Msa1154030 | 0.804932 | 1.703440e-49 | -8.615850e-47 |
| Msa0490390 | Msa1179940 | 0.825130 | 5.544805e-54 | -8.615850e-47 |
| Msa0490390 | Msa1179970 | 0.818502 | 1.895948e-52 | -8.615850e-47 |
| Msa0490390 | Msa1199220 | 0.826053 | 3.350828e-54 | -8.615850e-47 |
| Msa0490390 | Msa1209460 | 0.810800 | 9.627822e-51 | -8.615850e-47 |
| Msa0490390 | Msa1212940 | 0.801548 | 8.546939e-49 | -8.615850e-47 |
| Msa0490390 | Msa1225700 | 0.815855 | 7.462565e-52 | -8.615850e-47 |
| Msa0490390 | Msa1228210 | 0.809527 | 1.810456e-50 | -8.615850e-47 |
| Msa0490390 | Msa1229500 | 0.800871 | 1.176019e-48 | -8.615850e-47 |
| Msa0490390 | Msa1236100 | 0.810912 | 9.103527e-51 | -8.615850e-47 |
| Msa0490390 | Msa1238930 | 0.812282 | 4.584676e-51 | -8.615850e-47 |
| Msa0490390 | Msa1242230 | 0.804779 | 1.833362e-49 | -8.615850e-47 |
| Msa0490390 | Msa1242240 | 0.813150 | 2.960621e-51 | -8.615850e-47 |
| Msa0490390 | Msa1261010 | 0.807453 | 5.018893e-50 | -8.615850e-47 |
| Msa0490390 | Msa1269480 | 0.803100 | 4.094733e-49 | -8.615850e-47 |
| Msa0490390 | Msa1270610 | 0.806837 | 6.774641e-50 | -8.615850e-47 |
| Msa0490390 | Msa1271290 | 0.806942 | 6.437405e-50 | -8.615850e-47 |
| Msa0490390 | Msa1271990 | 0.803444 | 3.475379e-49 | -8.615850e-47 |
| Msa0490390 | Msa1277660 | 0.802469 | 5.529122e-49 | -8.615850e-47 |
| Msa0490390 | Msa1283840 | 0.819949 | 8.878893e-53 | -8.615850e-47 |
| Msa0490390 | Msa1283860 | 0.822986 | 1.766108e-53 | -8.615850e-47 |
| Msa0490390 | Msa1284260 | 0.822965 | 1.786230e-53 | -8.615850e-47 |
| Msa0490390 | Msa1284680 | 0.811805 | 5.826321e-51 | -8.615850e-47 |
| Msa0490390 | Msa1293770 | 0.800347 | 1.503715e-48 | -8.615850e-47 |
| Msa0490390 | Msa1300490 | 0.828873 | 7.057740e-55 | -8.615850e-47 |
| Msa0490390 | Msa1308380 | 0.811261 | 7.650057e-51 | -8.615850e-47 |
| Msa0490390 | Msa1320740 | 0.811118 | 8.216541e-51 | -8.615850e-47 |
| Msa0490390 | Msa1322860 | 0.804727 | 1.880362e-49 | -8.615850e-47 |
| Msa0490390 | Msa1327050 | 0.819064 | 1.412759e-52 | -8.615850e-47 |
| Msa0490390 | Msa1327680 | 0.808104 | 3.648598e-50 | -8.615850e-47 |
| Msa0490390 | Msa1334260 | 0.807003 | 6.248989e-50 | -8.615850e-47 |
| Msa0490390 | Msa1336710 | 0.811625 | 6.375191e-51 | -8.615850e-47 |
| Msa0490390 | Msa1346370 | 0.833414 | 5.406090e-56 | -8.615850e-47 |
| Msa0490390 | Msa1367370 | 0.803837 | 2.880571e-49 | -8.615850e-47 |
| Msa0490390 | Msa1369550 | 0.818316 | 2.088412e-52 | -8.615850e-47 |
| Msa0490390 | Msa1374040 | 0.821578 | 3.747752e-53 | -8.615850e-47 |
| Msa0490390 | Msa1374550 | 0.830452 | 2.914197e-55 | -8.615850e-47 |
| Msa0490390 | Msa1386780 | 0.805032 | 1.623639e-49 | -8.615850e-47 |
| Msa0490390 | Msa1409870 | 0.812817 | 3.502580e-51 | -8.615850e-47 |
| Msa0490390 | Msa1411700 | 0.806551 | 7.785272e-50 | -8.615850e-47 |
| Msa0490390 | Msa1417420 | 0.812295 | 4.555413e-51 | -8.615850e-47 |
| Msa0490390 | Msa1430690 | 0.814020 | 1.905714e-51 | -8.615850e-47 |
| Msa0490390 | Msa1443110 | 0.800308 | 1.531482e-48 | -8.615850e-47 |
| Msa0490390 | Msa1459270 | 0.810075 | 1.380412e-50 | -8.615850e-47 |
| Msa0490390 | Msa1461300 | 0.827559 | 1.463603e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490390 | MtrunA17_Chr3g0118521 | 96.277 | 376 | 14 | 0 | 1 | 376 | 1 | 376 | 0.0 | 723 |
| Msa0490390 | MtrunA17_Chr8g0377971 | 35.904 | 376 | 206 | 11 | 3 | 369 | 557 | 906 | 1.10e-56 | 199 |
| Msa0490390 | MtrunA17_Chr3g0121961 | 34.225 | 374 | 215 | 10 | 3 | 369 | 547 | 896 | 1.69e-53 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490390 | AT5G21060.1 | 69.867 | 375 | 113 | 0 | 1 | 375 | 1 | 375 | 0.0 | 531 |
| Msa0490390 | AT5G21060.2 | 69.496 | 377 | 113 | 1 | 1 | 375 | 1 | 377 | 0.0 | 528 |
| Msa0490390 | AT5G21060.3 | 69.231 | 377 | 114 | 1 | 1 | 375 | 1 | 377 | 0.0 | 526 |
| Msa0490390 | AT1G31230.1 | 34.783 | 299 | 183 | 5 | 81 | 369 | 605 | 901 | 1.36e-48 | 176 |
| Msa0490390 | AT4G19710.2 | 32.620 | 374 | 221 | 8 | 3 | 369 | 557 | 906 | 1.39e-46 | 171 |
| Msa0490390 | AT4G19710.1 | 31.579 | 304 | 179 | 7 | 3 | 301 | 557 | 836 | 2.34e-29 | 120 |
Find 124 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTATTCCTTTGATTCTAA+TGG | 0.200738 | 3_4:+11926765 | Msa0490390:CDS |
| TGCTGATATCGTGGATATTC+AGG | 0.217796 | 3_4:+11931140 | Msa0490390:CDS |
| TGTTGATGATTTATTGAATA+AGG | 0.223167 | 3_4:+11927446 | Msa0490390:CDS |
| TTTGAAACAGGCTTTGATTC+TGG | 0.253238 | 3_4:+11930267 | Msa0490390:intron |
| CAGACGAGATTATGCGATTC+AGG | 0.255431 | 3_4:-11929554 | None:intergenic |
| GATCCAGTTAATCGCATTAT+TGG | 0.269110 | 3_4:+11929579 | Msa0490390:CDS |
| GTGAATTTAAAGAAAATAAA+AGG | 0.273889 | 3_4:+11931195 | Msa0490390:three_prime_UTR |
| CTTCCGAAAGCAGAATTCTT+TGG | 0.276251 | 3_4:-11930816 | None:intergenic |
| AAAATCTTTCCTTCGGATTC+CGG | 0.278861 | 3_4:-11927663 | None:intergenic |
| GATTAATATGAATAGCATTC+AGG | 0.316451 | 3_4:+11930309 | Msa0490390:CDS |
| GTTGATGATTTATTGAATAA+GGG | 0.326428 | 3_4:+11927447 | Msa0490390:CDS |
| CTTCCAATAATGCGATTAAC+TGG | 0.332630 | 3_4:-11929582 | None:intergenic |
| ACTATTCCTTTGATTCTAAT+GGG | 0.343919 | 3_4:+11926766 | Msa0490390:CDS |
| CTATCAAAACTTGGTGATCT+TGG | 0.347928 | 3_4:+11927525 | Msa0490390:CDS |
| GCTTCTTGTTAGAACTTTGC+CGG | 0.356107 | 3_4:+11927481 | Msa0490390:CDS |
| TTGATTCTGGCTCGAATACT+TGG | 0.368413 | 3_4:+11930280 | Msa0490390:CDS |
| TGTCCAAGCTGCTAAAAGTC+TGG | 0.374845 | 3_4:+11929811 | Msa0490390:CDS |
| TTTGTGTTGTTGTGTTGTTA+TGG | 0.375476 | 3_4:+11927903 | Msa0490390:CDS |
| CTTACCATTGTAGATGTAAG+AGG | 0.378420 | 3_4:-11927937 | None:intergenic |
| GTGAAAGATTAAATTAAAGT+TGG | 0.384171 | 3_4:-11926706 | None:intergenic |
| ATACTCTTACTAGGGACATT+GGG | 0.386755 | 3_4:+11929743 | Msa0490390:intron |
| CTTCCAAAGAATTCTGCTTT+CGG | 0.386950 | 3_4:+11930813 | Msa0490390:CDS |
| AGCTTGTATCCCAAGGAAAT+GGG | 0.389249 | 3_4:+11930437 | Msa0490390:CDS |
| TTCAGGATTTATTTCCTTGA+GGG | 0.390450 | 3_4:+11931157 | Msa0490390:CDS |
| AAGCTTGTATCCCAAGGAAA+TGG | 0.391968 | 3_4:+11930436 | Msa0490390:CDS |
| TACATCAGGCCCCATTTCCT+TGG | 0.395678 | 3_4:-11930447 | None:intergenic |
| TGGCATATCCACGTCGTATC+CGG | 0.400128 | 3_4:+11928782 | Msa0490390:CDS |
| AAGTCAAAATCTCAAGTTGA+TGG | 0.407578 | 3_4:+11931414 | Msa0490390:three_prime_UTR |
| TGCTAGCGCTGACACTATAA+TGG | 0.411788 | 3_4:+11927861 | Msa0490390:CDS |
| AATCTCTAAAATCTTTCCTT+CGG | 0.420851 | 3_4:-11927670 | None:intergenic |
| CCTTTGATTCTAATGGGTTG+TGG | 0.422926 | 3_4:+11926772 | Msa0490390:CDS |
| GGACTATGCTTGAGAGTTGT+GGG | 0.425466 | 3_4:+11927396 | Msa0490390:CDS |
| TTGTGGAAATGTAAGTAGTA+AGG | 0.426196 | 3_4:-11926635 | None:intergenic |
| ACAGCCTTGAAATGCCTCAT+AGG | 0.432176 | 3_4:-11931722 | None:intergenic |
| CTTGAACAATTTAAACAAAA+CGG | 0.439806 | 3_4:+11931684 | Msa0490390:intron |
| ACATCAGGCCCCATTTCCTT+GGG | 0.444110 | 3_4:-11930446 | None:intergenic |
| TCTGCTTTCGGAAGATTAAG+AGG | 0.452062 | 3_4:+11930825 | Msa0490390:CDS |
| TTTGACTTGAAATGTATTCA+GGG | 0.458092 | 3_4:-11931399 | None:intergenic |
| ATGTCAAGTATTTGTGCATC+CGG | 0.460749 | 3_4:+11927644 | Msa0490390:CDS |
| CTAATGGGTTGTGGAGGAGT+TGG | 0.462718 | 3_4:+11926781 | Msa0490390:CDS |
| CACAGACATTAGAATGTGCT+TGG | 0.463865 | 3_4:-11931497 | None:intergenic |
| AATCTCAAGTTGATGGTCAA+TGG | 0.468797 | 3_4:+11931421 | Msa0490390:three_prime_UTR |
| CGATTCAGGGATGATATCAC+TGG | 0.469270 | 3_4:-11929540 | None:intergenic |
| TGGAATGGATGTTGCTAGAA+AGG | 0.469655 | 3_4:+11929954 | Msa0490390:CDS |
| CTGAATCGCATAATCTCGTC+TGG | 0.472124 | 3_4:+11929555 | Msa0490390:CDS |
| CCGCTGGTTATTCAAGGTGC+TGG | 0.472793 | 3_4:+11931084 | Msa0490390:CDS |
| GTTATTCAAGGTGCTGGAGC+TGG | 0.481360 | 3_4:+11931090 | Msa0490390:CDS |
| ACAGACATTAGAATGTGCTT+GGG | 0.485500 | 3_4:-11931496 | None:intergenic |
| TGATTTATTGAATAAGGGGT+TGG | 0.487597 | 3_4:+11927452 | Msa0490390:CDS |
| GTCCAAGCTGCTAAAAGTCT+GGG | 0.492331 | 3_4:+11929812 | Msa0490390:CDS |
| TCATCAACGGTCATTACATC+AGG | 0.493287 | 3_4:-11930461 | None:intergenic |
| GAACTTTGCCGGCTCAAGAA+TGG | 0.497033 | 3_4:+11927492 | Msa0490390:CDS |
| CATACTCTTACTAGGGACAT+TGG | 0.497321 | 3_4:+11929742 | Msa0490390:intron |
| TTCTAATGTCTGTGTTATGT+TGG | 0.498346 | 3_4:+11931506 | Msa0490390:three_prime_UTR |
| TTGAAATGCCTCATAGGAAT+CGG | 0.499687 | 3_4:-11931716 | None:intergenic |
| CGCATTATTGGAAGTTTGAG+TGG | 0.502100 | 3_4:+11929591 | Msa0490390:CDS |
| AACCAACCGCTGGTTATTCA+AGG | 0.504149 | 3_4:+11931078 | Msa0490390:CDS |
| CGATATGTCTGTGTCATTGA+GGG | 0.505166 | 3_4:+11930566 | Msa0490390:CDS |
| GGGACTATGCTTGAGAGTTG+TGG | 0.509602 | 3_4:+11927395 | Msa0490390:intron |
| AGACGAGATTATGCGATTCA+GGG | 0.509631 | 3_4:-11929553 | None:intergenic |
| GGCGAATCTCTATCAAAACT+TGG | 0.516628 | 3_4:+11927516 | Msa0490390:CDS |
| ATTCGCCACCATTCTTGAGC+CGG | 0.518366 | 3_4:-11927500 | None:intergenic |
| GTGAGGATAGAGAAAATGTA+TGG | 0.519715 | 3_4:+11931605 | Msa0490390:three_prime_UTR |
| GTTGAGAAGGCAGCTTCAAA+CGG | 0.522134 | 3_4:+11930533 | Msa0490390:CDS |
| CCGTTCTCTTCACTCTTCAC+AGG | 0.524708 | 3_4:+11926834 | Msa0490390:CDS |
| TGTGGAAATGTAAGTAGTAA+GGG | 0.527351 | 3_4:-11926634 | None:intergenic |
| ATAATGGAAGAAGCAGTTTG+TGG | 0.529193 | 3_4:-11926652 | None:intergenic |
| TTGTGCTTATATGTGTAAGC+TGG | 0.529301 | 3_4:+11926574 | Msa0490390:five_prime_UTR |
| CCACAACCCATTAGAATCAA+AGG | 0.529303 | 3_4:-11926772 | None:intergenic |
| GGAAATGACACGACTGCAGC+TGG | 0.530672 | 3_4:+11931111 | Msa0490390:CDS |
| TGGTCAATGGAGGCTTCATA+TGG | 0.530931 | 3_4:+11931434 | Msa0490390:three_prime_UTR |
| TGCTTGAGAGTTGTGGGAGT+TGG | 0.534921 | 3_4:+11927402 | Msa0490390:CDS |
| CACTTACAGTTGACTCATGC+CGG | 0.535767 | 3_4:-11928801 | None:intergenic |
| TTAGAGATTGCATCTCAACT+TGG | 0.536914 | 3_4:+11927684 | Msa0490390:CDS |
| GCAGATCCGCGTGACGACCT+TGG | 0.541256 | 3_4:+11929931 | Msa0490390:intron |
| AGTTGGTGATAGTAAATCTC+TGG | 0.543805 | 3_4:+11927419 | Msa0490390:CDS |
| GCGATATGTCTGTGTCATTG+AGG | 0.544430 | 3_4:+11930565 | Msa0490390:CDS |
| CAATGGAGGCTTCATATGGA+TGG | 0.545067 | 3_4:+11931438 | Msa0490390:three_prime_UTR |
| TTGATTCTAATGGGTTGTGG+AGG | 0.548675 | 3_4:+11926775 | Msa0490390:CDS |
| GTAATGAGTGAGGTTGAAGA+TGG | 0.554787 | 3_4:+11929770 | Msa0490390:CDS |
| TATTCAAGAGAGAGTTGAGA+AGG | 0.555589 | 3_4:+11930520 | Msa0490390:CDS |
| CACCTTGAATAACCAGCGGT+TGG | 0.556037 | 3_4:-11931080 | None:intergenic |
| GCGTGACGACCTTGGTGGAA+TGG | 0.557142 | 3_4:+11929939 | Msa0490390:CDS |
| TACCACTGCCGATTCCTATG+AGG | 0.559122 | 3_4:+11931708 | Msa0490390:three_prime_UTR |
| ATTAAGAGGAAGTGATAATG+TGG | 0.560797 | 3_4:+11930839 | Msa0490390:CDS |
| ATTCAGGATTTATTTCCTTG+AGG | 0.563190 | 3_4:+11931156 | Msa0490390:CDS |
| AACGGCACGAGACAATGTGT+TGG | 0.574800 | 3_4:-11926816 | None:intergenic |
| TTCAGAACATATATCAATGT+AGG | 0.575977 | 3_4:+11931583 | Msa0490390:three_prime_UTR |
| TTGATGATTTATTGAATAAG+GGG | 0.577385 | 3_4:+11927448 | Msa0490390:CDS |
| GATTGAAAGCTTGTATCCCA+AGG | 0.582879 | 3_4:+11930430 | Msa0490390:intron |
| AACATATATCAATGTAGGTG+AGG | 0.586653 | 3_4:+11931588 | Msa0490390:three_prime_UTR |
| GTGCTATAGTAACCAACCGC+TGG | 0.589730 | 3_4:+11931068 | Msa0490390:CDS |
| GATCCGCGTGACGACCTTGG+TGG | 0.590453 | 3_4:+11929934 | Msa0490390:intron |
| GCTTGGACAACTTGGCTCAG+TGG | 0.593287 | 3_4:-11929797 | None:intergenic |
| AGTCTGGGGTACACTGAACC+AGG | 0.596572 | 3_4:+11929827 | Msa0490390:CDS |
| AATGGTACTTAAACAAGTGG+TGG | 0.597037 | 3_4:+11927879 | Msa0490390:CDS |
| TATAATGGTACTTAAACAAG+TGG | 0.600618 | 3_4:+11927876 | Msa0490390:CDS |
| TCTGTGTCATTGAGGGCCCA+AGG | 0.607852 | 3_4:+11930573 | Msa0490390:CDS |
| GACATTAGAATGTGCTTGGG+GGG | 0.608681 | 3_4:-11931493 | None:intergenic |
| TGCCTCATAGGAATCGGCAG+TGG | 0.609447 | 3_4:-11931710 | None:intergenic |
| TGGCTCGAATACTTGGTCGT+CGG | 0.610234 | 3_4:+11930287 | Msa0490390:CDS |
| ACGAGACAATGTGTTGGAGA+AGG | 0.615279 | 3_4:-11926810 | None:intergenic |
| TACTCTTACTAGGGACATTG+GGG | 0.622662 | 3_4:+11929744 | Msa0490390:intron |
| AGCTTACACATATAAGCACA+AGG | 0.624158 | 3_4:-11926572 | None:intergenic |
| CTTTGCCGGCTCAAGAATGG+TGG | 0.627219 | 3_4:+11927495 | Msa0490390:CDS |
| GCTTGTATCCCAAGGAAATG+GGG | 0.633506 | 3_4:+11930438 | Msa0490390:CDS |
| AAAGCCTCTTACATCTACAA+TGG | 0.637560 | 3_4:+11927933 | Msa0490390:CDS |
| GACTCATGCCGGATACGACG+TGG | 0.640176 | 3_4:-11928790 | None:intergenic |
| CTCAAGTTGATGGTCAATGG+AGG | 0.640442 | 3_4:+11931424 | Msa0490390:three_prime_UTR |
| CAGACATTAGAATGTGCTTG+GGG | 0.641486 | 3_4:-11931495 | None:intergenic |
| GCTAGCAGTGCAATCTACAA+AGG | 0.654213 | 3_4:-11927845 | None:intergenic |
| GACAGTTAGAAGTATACACT+CGG | 0.660358 | 3_4:+11931046 | Msa0490390:intron |
| TGGTGTCCTTGCTGATATCG+TGG | 0.665644 | 3_4:+11931131 | Msa0490390:CDS |
| TCCAAGCTGCTAAAAGTCTG+GGG | 0.665672 | 3_4:+11929813 | Msa0490390:CDS |
| TGGTGATAGTAAATCTCTGG+TGG | 0.676066 | 3_4:+11927422 | Msa0490390:CDS |
| GAATATCCACGATATCAGCA+AGG | 0.690515 | 3_4:-11931137 | None:intergenic |
| ATTGGGGTATGTAATGAGTG+AGG | 0.701426 | 3_4:+11929760 | Msa0490390:CDS |
| ATTCCACCAAGGTCGTCACG+CGG | 0.703419 | 3_4:-11929937 | None:intergenic |
| TTTGTGCATCCGGAATCCGA+AGG | 0.704248 | 3_4:+11927654 | Msa0490390:CDS |
| TAGCAACATCCATTCCACCA+AGG | 0.709532 | 3_4:-11929948 | None:intergenic |
| CCAGCACCTTGAATAACCAG+CGG | 0.719025 | 3_4:-11931084 | None:intergenic |
| GCTTACACATATAAGCACAA+GGG | 0.722316 | 3_4:-11926571 | None:intergenic |
| AGACATTAGAATGTGCTTGG+GGG | 0.723021 | 3_4:-11931494 | None:intergenic |
| CCTGTGAAGAGTGAAGAGAA+CGG | 0.764397 | 3_4:-11926834 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAACAACAAATTTTATTA+AGG | - | chr3_4:11928600-11928619 | None:intergenic | 10.0% |
| !!! | TCAATTTTTTTTTTTTTAAC+AGG | - | chr3_4:11929173-11929192 | None:intergenic | 10.0% |
| !! | ATTATTAGTATTAAATATGT+TGG | + | chr3_4:11930730-11930749 | Msa0490390:intron | 10.0% |
| !!! | TTTTTGTTAAAATTTTGATT+TGG | + | chr3_4:11931268-11931287 | Msa0490390:intron | 10.0% |
| !!! | TACTATTATTATTTTCAATT+TGG | + | chr3_4:11931548-11931567 | Msa0490390:three_prime_UTR | 10.0% |
| !!! | ATTTTATGGATTTTATGAAA+TGG | - | chr3_4:11926679-11926698 | None:intergenic | 15.0% |
| !!! | TTTTGTTTGTTTTTTTATCA+TGG | + | chr3_4:11927044-11927063 | Msa0490390:intron | 15.0% |
| !!! | TTTGTTTGTTTTTTTATCAT+GGG | + | chr3_4:11927045-11927064 | Msa0490390:intron | 15.0% |
| !!! | TCATCTTTTTGAAATTTTAT+TGG | + | chr3_4:11927216-11927235 | Msa0490390:intron | 15.0% |
| !!! | AAATTTTTAAGTGTTTTTGT+TGG | + | chr3_4:11927335-11927354 | Msa0490390:intron | 15.0% |
| !!! | ATTTTGATTGTTATTTTGAT+TGG | + | chr3_4:11927370-11927389 | Msa0490390:intron | 15.0% |
| !!! | TGTTTTATAATTGTTGAAAT+GGG | + | chr3_4:11927971-11927990 | Msa0490390:intron | 15.0% |
| !! | AACATAGATTATAAAGTTTA+AGG | - | chr3_4:11928174-11928193 | None:intergenic | 15.0% |
| !!! | TATAATGAAACTTTCTTTTA+GGG | - | chr3_4:11928634-11928653 | None:intergenic | 15.0% |
| !!! | TTATAATGAAACTTTCTTTT+AGG | - | chr3_4:11928635-11928654 | None:intergenic | 15.0% |
| !! | TAAACAAGGAAAATAAATTT+AGG | + | chr3_4:11929093-11929112 | Msa0490390:intron | 15.0% |
| !! | AAACAAGGAAAATAAATTTA+GGG | + | chr3_4:11929094-11929113 | Msa0490390:intron | 15.0% |
| !! | TTAAAGGTAATAAAATATGA+TGG | + | chr3_4:11929305-11929324 | Msa0490390:intron | 15.0% |
| !!! | TTAAATTTTGTTACTTTTGA+TGG | - | chr3_4:11929351-11929370 | None:intergenic | 15.0% |
| !!! | TTGAAATATTTTGGATTTTA+AGG | + | chr3_4:11929468-11929487 | Msa0490390:intron | 15.0% |
| !! | AAAATTTACCTTTAAATTTG+TGG | + | chr3_4:11929884-11929903 | Msa0490390:intron | 15.0% |
| !! | TAAATATTCCACAAATTTAA+AGG | - | chr3_4:11929895-11929914 | None:intergenic | 15.0% |
| !! | TTATGAATAGTAGTTTAAAA+TGG | + | chr3_4:11930203-11930222 | Msa0490390:intron | 15.0% |
| !!! | AATATAAACTTTCTGTTTTT+TGG | + | chr3_4:11930237-11930256 | Msa0490390:intron | 15.0% |
| !!! | ATATAAACTTTCTGTTTTTT+GGG | + | chr3_4:11930238-11930257 | Msa0490390:intron | 15.0% |
| !! | AGAAGTTAAATTGATATAAA+AGG | - | chr3_4:11930758-11930777 | None:intergenic | 15.0% |
| !!! | TTATTTTATTTTCTCGTTTT+TGG | + | chr3_4:11930867-11930886 | Msa0490390:intron | 15.0% |
| !! | GTGAATTTAAAGAAAATAAA+AGG | + | chr3_4:11931195-11931214 | Msa0490390:three_prime_UTR | 15.0% |
| !!! | TATTTTTCATTATGATATGT+AGG | + | chr3_4:11931647-11931666 | Msa0490390:intron | 15.0% |
| !!! | GATTTTATGAAATGGAATAA+TGG | - | chr3_4:11926671-11926690 | None:intergenic | 20.0% |
| !!! | AAGTTGGAAATTGAATTTTA+TGG | - | chr3_4:11926693-11926712 | None:intergenic | 20.0% |
| !! | GTGAAAGATTAAATTAAAGT+TGG | - | chr3_4:11926709-11926728 | None:intergenic | 20.0% |
| !! | AAATTATCTAGAAGAGAAAT+GGG | - | chr3_4:11927023-11927042 | None:intergenic | 20.0% |
| !! | AAAATTATCTAGAAGAGAAA+TGG | - | chr3_4:11927024-11927043 | None:intergenic | 20.0% |
| !!! | TGTTGATGATTTATTGAATA+AGG | + | chr3_4:11927446-11927465 | Msa0490390:CDS | 20.0% |
| !!! | GTTGATGATTTATTGAATAA+GGG | + | chr3_4:11927447-11927466 | Msa0490390:CDS | 20.0% |
| !!! | TTGATGATTTATTGAATAAG+GGG | + | chr3_4:11927448-11927467 | Msa0490390:CDS | 20.0% |
| !!! | ATGAAATTCTACTCTTATTT+AGG | - | chr3_4:11927783-11927802 | None:intergenic | 20.0% |
| !!! | GTGTTTTATAATTGTTGAAA+TGG | + | chr3_4:11927970-11927989 | Msa0490390:intron | 20.0% |
| !! | AAGTAAAATTAGACATAAGT+AGG | - | chr3_4:11928034-11928053 | None:intergenic | 20.0% |
| !! | AAAACAAAATATTGTGAAAG+TGG | + | chr3_4:11928892-11928911 | Msa0490390:intron | 20.0% |
| !! | AAACAAAATATTGTGAAAGT+GGG | + | chr3_4:11928893-11928912 | Msa0490390:intron | 20.0% |
| !! | TAACCAATTAAAGAAATTCT+AGG | - | chr3_4:11928956-11928975 | None:intergenic | 20.0% |
| !!! | GTTTTTTATGGATCTATAAT+AGG | + | chr3_4:11929037-11929056 | Msa0490390:intron | 20.0% |
| !!! | TTTATTTTCCTTGTTTACTA+AGG | - | chr3_4:11929090-11929109 | None:intergenic | 20.0% |
| !! | AACAAGGAAAATAAATTTAG+GGG | + | chr3_4:11929095-11929114 | Msa0490390:intron | 20.0% |
| !!! | ATGGGAATATTGAAATATTT+TGG | + | chr3_4:11929459-11929478 | Msa0490390:intron | 20.0% |
| !! | AACTACTATAAATAAAGGAA+AGG | - | chr3_4:11930370-11930389 | None:intergenic | 20.0% |
| !! | GGAAAAACTACTATAAATAA+AGG | - | chr3_4:11930375-11930394 | None:intergenic | 20.0% |
| !! | AAAATTACTAACATAGCATA+GGG | - | chr3_4:11930396-11930415 | None:intergenic | 20.0% |
| !! | TAAAATTACTAACATAGCAT+AGG | - | chr3_4:11930397-11930416 | None:intergenic | 20.0% |
| !!! | GGTGTTAAGTATTTTTAATT+AGG | + | chr3_4:11930888-11930907 | Msa0490390:intron | 20.0% |
| !! | AAATCAACATTGAAATTGAT+AGG | - | chr3_4:11931302-11931321 | None:intergenic | 20.0% |
| !! | TTACAATATGAATGTGTTAA+TGG | + | chr3_4:11931338-11931357 | Msa0490390:intron | 20.0% |
| !! | CTTGAACAATTTAAACAAAA+CGG | + | chr3_4:11931684-11931703 | Msa0490390:intron | 20.0% |
| ! | ACTATTCCTTTGATTCTAAT+GGG | + | chr3_4:11926766-11926785 | Msa0490390:CDS | 25.0% |
| ! | TTTGATACTAAAACGCAAAT+GGG | - | chr3_4:11926952-11926971 | None:intergenic | 25.0% |
| !! | TTTTGATACTAAAACGCAAA+TGG | - | chr3_4:11926953-11926972 | None:intergenic | 25.0% |
| !! | CAATAGCTAGATGAATTTTA+AGG | - | chr3_4:11927096-11927115 | None:intergenic | 25.0% |
| ! | AAGAATAGATGAATTAATGG+TGG | - | chr3_4:11927141-11927160 | None:intergenic | 25.0% |
| ! | CCAAAGAATAGATGAATTAA+TGG | - | chr3_4:11927144-11927163 | None:intergenic | 25.0% |
| ! | CCATTAATTCATCTATTCTT+TGG | + | chr3_4:11927141-11927160 | Msa0490390:intron | 25.0% |
| ! | TAATTCATCTATTCTTTGGA+AGG | + | chr3_4:11927145-11927164 | Msa0490390:intron | 25.0% |
| ! | ACTCTTTGATTGTAATTGAA+AGG | + | chr3_4:11927618-11927637 | Msa0490390:intron | 25.0% |
| !!! | AATCTCTAAAATCTTTCCTT+CGG | - | chr3_4:11927673-11927692 | None:intergenic | 25.0% |
| ! | TATAATGGTACTTAAACAAG+TGG | + | chr3_4:11927876-11927895 | Msa0490390:CDS | 25.0% |
| !! | ACTTGTTGATATATTCTAGA+CGG | + | chr3_4:11928075-11928094 | Msa0490390:intron | 25.0% |
| !! | ATTTTCTGTCAAATACTAAC+AGG | - | chr3_4:11928347-11928366 | None:intergenic | 25.0% |
| ! | ACAAAGAAACAAAGTAAAGT+GGG | - | chr3_4:11928694-11928713 | None:intergenic | 25.0% |
| ! | AACAAAGAAACAAAGTAAAG+TGG | - | chr3_4:11928695-11928714 | None:intergenic | 25.0% |
| ! | GTTTCTTTGTTCTATTGTTA+TGG | + | chr3_4:11928704-11928723 | Msa0490390:intron | 25.0% |
| ! | ATACATCTTTAATCTAGTTG+AGG | - | chr3_4:11928840-11928859 | None:intergenic | 25.0% |
| ! | GTTCCTAGAATTTCTTTAAT+TGG | + | chr3_4:11928950-11928969 | Msa0490390:intron | 25.0% |
| !!! | TAAGTTCTGGATGTTTTTTA+TGG | + | chr3_4:11929025-11929044 | Msa0490390:intron | 25.0% |
| ! | TCTCTGCAATAAAATCATAA+GGG | - | chr3_4:11929257-11929276 | None:intergenic | 25.0% |
| !! | ATTTTATTGCAGAGAGAAAT+AGG | + | chr3_4:11929262-11929281 | Msa0490390:intron | 25.0% |
| ! | ATGGGATGATAAATAGTTAA+AGG | + | chr3_4:11929289-11929308 | Msa0490390:intron | 25.0% |
| !! | CTCTAAAAAGAGAACTAAAA+AGG | + | chr3_4:11929389-11929408 | Msa0490390:intron | 25.0% |
| !! | TGCCTATCAAAATCTTATTT+GGG | + | chr3_4:11929433-11929452 | Msa0490390:intron | 25.0% |
| !!! | AACCCAAATAAGATTTTGAT+AGG | - | chr3_4:11929438-11929457 | None:intergenic | 25.0% |
| !! | AAAATCTTATTTGGGTTCAT+GGG | + | chr3_4:11929441-11929460 | Msa0490390:intron | 25.0% |
| ! | AACAATACCTTACATTTATG+TGG | - | chr3_4:11929698-11929717 | None:intergenic | 25.0% |
| !! | AGGTATTGTTATGTTGATAT+TGG | + | chr3_4:11929708-11929727 | Msa0490390:intron | 25.0% |
| !!! | TTATTTTGCATACTCTTACT+AGG | + | chr3_4:11929734-11929753 | Msa0490390:intron | 25.0% |
| !! | TATTTTGCATACTCTTACTA+GGG | + | chr3_4:11929735-11929754 | Msa0490390:intron | 25.0% |
| ! | ACACATAAATTTGGCTAAAA+CGG | - | chr3_4:11930057-11930076 | None:intergenic | 25.0% |
| !! | TTTTAGCCAAATTTATGTGT+TGG | + | chr3_4:11930057-11930076 | Msa0490390:intron | 25.0% |
| ! | TTTAGCCAAATTTATGTGTT+GGG | + | chr3_4:11930058-11930077 | Msa0490390:intron | 25.0% |
| !!! | CATTTTCGAAGTTTTGATAT+TGG | + | chr3_4:11930104-11930123 | Msa0490390:intron | 25.0% |
| ! | GATTAATATGAATAGCATTC+AGG | + | chr3_4:11930309-11930328 | Msa0490390:CDS | 25.0% |
| ! | ACTATAAATAAAGGAAAGGT+AGG | - | chr3_4:11930366-11930385 | None:intergenic | 25.0% |
| ! | AATTGAACACAGAATATGAA+GGG | - | chr3_4:11930613-11930632 | None:intergenic | 25.0% |
| ! | TTGAATCTTTGCATATGATT+TGG | + | chr3_4:11930689-11930708 | Msa0490390:intron | 25.0% |
| ! | ATTTGCATCAACATACAAAA+TGG | - | chr3_4:11931026-11931045 | None:intergenic | 25.0% |
| !!! | TTTGACTTGAAATGTATTCA+GGG | - | chr3_4:11931402-11931421 | None:intergenic | 25.0% |
| !!! | TTTTGACTTGAAATGTATTC+AGG | - | chr3_4:11931403-11931422 | None:intergenic | 25.0% |
| ! | TTCAGAACATATATCAATGT+AGG | + | chr3_4:11931583-11931602 | Msa0490390:three_prime_UTR | 25.0% |
| TGTGGAAATGTAAGTAGTAA+GGG | - | chr3_4:11926637-11926656 | None:intergenic | 30.0% | |
| TTGTGGAAATGTAAGTAGTA+AGG | - | chr3_4:11926638-11926657 | None:intergenic | 30.0% | |
| GACTATTCCTTTGATTCTAA+TGG | + | chr3_4:11926765-11926784 | Msa0490390:CDS | 30.0% | |
| ! | TGATCATTTTCTGACATTGA+TGG | + | chr3_4:11927299-11927318 | Msa0490390:intron | 30.0% |
| !!! | TGATTGTTATTTTGATTGGC+AGG | + | chr3_4:11927374-11927393 | Msa0490390:intron | 30.0% |
| !!! | GATTGTTATTTTGATTGGCA+GGG | + | chr3_4:11927375-11927394 | Msa0490390:intron | 30.0% |
| TGATTTATTGAATAAGGGGT+TGG | + | chr3_4:11927452-11927471 | Msa0490390:CDS | 30.0% | |
| !!! | AGACAGACTTTTTTCATTGT+AGG | + | chr3_4:11927817-11927836 | Msa0490390:intron | 30.0% |
| !!! | GACTTTTTTCATTGTAGGTT+TGG | + | chr3_4:11927822-11927841 | Msa0490390:intron | 30.0% |
| ! | TTTGTGTTGTTGTGTTGTTA+TGG | + | chr3_4:11927903-11927922 | Msa0490390:CDS | 30.0% |
| AATTGTTGAAATGGGAAGTT+AGG | + | chr3_4:11927979-11927998 | Msa0490390:intron | 30.0% | |
| ! | AGTTAGGAAACACATGATTT+TGG | + | chr3_4:11927995-11928014 | Msa0490390:intron | 30.0% |
| AATTTACCCCCTCTAATTTA+TGG | + | chr3_4:11928109-11928128 | Msa0490390:intron | 30.0% | |
| TCGTAAAAAAAAGAGTAACG+TGG | + | chr3_4:11928147-11928166 | Msa0490390:intron | 30.0% | |
| CATTTCAAGAAGGATCATAT+GGG | - | chr3_4:11928264-11928283 | None:intergenic | 30.0% | |
| ! | TTTTCTGCAAATTTCAAGCT+TGG | - | chr3_4:11928294-11928313 | None:intergenic | 30.0% |
| AATGTGCTTGTCAAAAAGTT+TGG | + | chr3_4:11928383-11928402 | Msa0490390:intron | 30.0% | |
| ATGTGCTTGTCAAAAAGTTT+GGG | + | chr3_4:11928384-11928403 | Msa0490390:intron | 30.0% | |
| ATACAATAGGGAACGTATAT+AGG | - | chr3_4:11928533-11928552 | None:intergenic | 30.0% | |
| TAAGAGCTATTGTTTAGATG+AGG | - | chr3_4:11928733-11928752 | None:intergenic | 30.0% | |
| CAATAGCTCTTAAATGAAAC+AGG | + | chr3_4:11928741-11928760 | Msa0490390:intron | 30.0% | |
| TTATGGATCTATAATAGGCA+AGG | + | chr3_4:11929042-11929061 | Msa0490390:intron | 30.0% | |
| ! | GTTTACTAAGGTCTGAATTT+TGG | - | chr3_4:11929078-11929097 | None:intergenic | 30.0% |
| AATTCAGACCTTAGTAAACA+AGG | + | chr3_4:11929079-11929098 | Msa0490390:intron | 30.0% | |
| ! | CTGATTTTCGAACAATTATC+TGG | + | chr3_4:11929132-11929151 | Msa0490390:intron | 30.0% |
| CTCTCTGCAATAAAATCATA+AGG | - | chr3_4:11929258-11929277 | None:intergenic | 30.0% | |
| GTGCCTATCAAAATCTTATT+TGG | + | chr3_4:11929432-11929451 | Msa0490390:intron | 30.0% | |
| ! | CAAAATCTTATTTGGGTTCA+TGG | + | chr3_4:11929440-11929459 | Msa0490390:intron | 30.0% |
| !! | TTTTGGATTTTAAGGAGCTT+TGG | + | chr3_4:11929476-11929495 | Msa0490390:intron | 30.0% |
| !! | TCTGGTTGTGATGTTTTTAA+AGG | + | chr3_4:11929503-11929522 | Msa0490390:intron | 30.0% |
| !! | GTTGTGATGTTTTTAAAGGT+AGG | + | chr3_4:11929507-11929526 | Msa0490390:intron | 30.0% |
| TAGTCTTCCACATAAATGTA+AGG | + | chr3_4:11929688-11929707 | Msa0490390:intron | 30.0% | |
| TTGTGTAGCAATTAGCAAAT+GGG | - | chr3_4:11929854-11929873 | None:intergenic | 30.0% | |
| ATTGTGTAGCAATTAGCAAA+TGG | - | chr3_4:11929855-11929874 | None:intergenic | 30.0% | |
| ! | TTTCAGCTTTTTGATAAAGC+AGG | - | chr3_4:11930018-11930037 | None:intergenic | 30.0% |
| CACATAAATTTGGCTAAAAC+GGG | - | chr3_4:11930056-11930075 | None:intergenic | 30.0% | |
| TAGTTGACCATTTCTTATCT+CGG | + | chr3_4:11930142-11930161 | Msa0490390:intron | 30.0% | |
| ! | TTTGGGCTAATATTTGAAAC+AGG | + | chr3_4:11930255-11930274 | Msa0490390:intron | 30.0% |
| GAATTGAACACAGAATATGA+AGG | - | chr3_4:11930614-11930633 | None:intergenic | 30.0% | |
| !! | TTAACTTCTCTCCTTTTTCA+AGG | + | chr3_4:11930769-11930788 | Msa0490390:intron | 30.0% |
| ! | ATTAAGAGGAAGTGATAATG+TGG | + | chr3_4:11930839-11930858 | Msa0490390:CDS | 30.0% |
| ! | AGGATTTTTGTCCATTTTAG+AGG | + | chr3_4:11930908-11930927 | Msa0490390:intron | 30.0% |
| AAAGAAGAACTTGTACTGTA+CGG | - | chr3_4:11930977-11930996 | None:intergenic | 30.0% | |
| ATTCAGGATTTATTTCCTTG+AGG | + | chr3_4:11931156-11931175 | Msa0490390:CDS | 30.0% | |
| TTCAGGATTTATTTCCTTGA+GGG | + | chr3_4:11931157-11931176 | Msa0490390:CDS | 30.0% | |
| ! | AAATAAAAGGTACAGCTTCT+TGG | + | chr3_4:11931208-11931227 | Msa0490390:intron | 30.0% |
| ATGTGTTAATGGTTTATAGC+TGG | + | chr3_4:11931349-11931368 | Msa0490390:intron | 30.0% | |
| !! | AAGTCAAAATCTCAAGTTGA+TGG | + | chr3_4:11931414-11931433 | Msa0490390:three_prime_UTR | 30.0% |
| TTCTAATGTCTGTGTTATGT+TGG | + | chr3_4:11931506-11931525 | Msa0490390:three_prime_UTR | 30.0% | |
| AACATATATCAATGTAGGTG+AGG | + | chr3_4:11931588-11931607 | Msa0490390:three_prime_UTR | 30.0% | |
| !!! | TGTATGGTTTTATGACTTGT+AGG | + | chr3_4:11931621-11931640 | Msa0490390:three_prime_UTR | 30.0% |
| GCTTACACATATAAGCACAA+GGG | - | chr3_4:11926574-11926593 | None:intergenic | 35.0% | |
| AGCTTACACATATAAGCACA+AGG | - | chr3_4:11926575-11926594 | None:intergenic | 35.0% | |
| TTGTGCTTATATGTGTAAGC+TGG | + | chr3_4:11926574-11926593 | Msa0490390:five_prime_UTR | 35.0% | |
| ! | ATAATGGAAGAAGCAGTTTG+TGG | - | chr3_4:11926655-11926674 | None:intergenic | 35.0% |
| AATCACACATGTTAGTGTCA+CGG | - | chr3_4:11927183-11927202 | None:intergenic | 35.0% | |
| TGATCATACTCTATGAAGCA+CGG | - | chr3_4:11927285-11927304 | None:intergenic | 35.0% | |
| !! | AGTTGGTGATAGTAAATCTC+TGG | + | chr3_4:11927419-11927438 | Msa0490390:CDS | 35.0% |
| ! | CTATCAAAACTTGGTGATCT+TGG | + | chr3_4:11927525-11927544 | Msa0490390:CDS | 35.0% |
| ATGTCAAGTATTTGTGCATC+CGG | + | chr3_4:11927644-11927663 | Msa0490390:CDS | 35.0% | |
| AAAATCTTTCCTTCGGATTC+CGG | - | chr3_4:11927666-11927685 | None:intergenic | 35.0% | |
| TTAGAGATTGCATCTCAACT+TGG | + | chr3_4:11927684-11927703 | Msa0490390:CDS | 35.0% | |
| TCTCAACTTGGTAAAAAGAC+AGG | + | chr3_4:11927696-11927715 | Msa0490390:CDS | 35.0% | |
| AATGGTACTTAAACAAGTGG+TGG | + | chr3_4:11927879-11927898 | Msa0490390:CDS | 35.0% | |
| AAAGCCTCTTACATCTACAA+TGG | + | chr3_4:11927933-11927952 | Msa0490390:CDS | 35.0% | |
| CTTACCATTGTAGATGTAAG+AGG | - | chr3_4:11927940-11927959 | None:intergenic | 35.0% | |
| AATATATCAACAAGTGCCAC+TGG | - | chr3_4:11928070-11928089 | None:intergenic | 35.0% | |
| AACATGGCCATAAATTAGAG+GGG | - | chr3_4:11928119-11928138 | None:intergenic | 35.0% | |
| GAACATGGCCATAAATTAGA+GGG | - | chr3_4:11928120-11928139 | None:intergenic | 35.0% | |
| TGAACATGGCCATAAATTAG+AGG | - | chr3_4:11928121-11928140 | None:intergenic | 35.0% | |
| ATTTATGGCCATGTTCAGTT+TGG | + | chr3_4:11928124-11928143 | Msa0490390:intron | 35.0% | |
| ! | TTTTACGACCAAACTGAACA+TGG | - | chr3_4:11928135-11928154 | None:intergenic | 35.0% |
| CCATTTCAAGAAGGATCATA+TGG | - | chr3_4:11928265-11928284 | None:intergenic | 35.0% | |
| CCATATGATCCTTCTTGAAA+TGG | + | chr3_4:11928262-11928281 | Msa0490390:intron | 35.0% | |
| TGGAAAAGTCCATTTCAAGA+AGG | - | chr3_4:11928274-11928293 | None:intergenic | 35.0% | |
| TGTGCTTGTCAAAAAGTTTG+GGG | + | chr3_4:11928385-11928404 | Msa0490390:intron | 35.0% | |
| !!! | AGACTAGACTTTTTTCCACT+AGG | + | chr3_4:11928464-11928483 | Msa0490390:intron | 35.0% |
| GGCAAAAGCAAGATACAATA+GGG | - | chr3_4:11928545-11928564 | None:intergenic | 35.0% | |
| !! | CTATTGTATCTTGCTTTTGC+CGG | + | chr3_4:11928544-11928563 | Msa0490390:intron | 35.0% |
| TAGCTCTTAAATGAAACAGG+AGG | + | chr3_4:11928744-11928763 | Msa0490390:intron | 35.0% | |
| !! | GGAGGATTTTGAAAAACTTC+TGG | + | chr3_4:11928762-11928781 | Msa0490390:intron | 35.0% |
| ACAAGTTATTGCAACGAGAT+AGG | + | chr3_4:11928862-11928881 | Msa0490390:intron | 35.0% | |
| CAAGTTATTGCAACGAGATA+GGG | + | chr3_4:11928863-11928882 | Msa0490390:intron | 35.0% | |
| AAAGTGGGTGTTCAATAAAG+AGG | + | chr3_4:11928908-11928927 | Msa0490390:intron | 35.0% | |
| AAAACATCCAGAACTTAGAC+AGG | - | chr3_4:11929022-11929041 | None:intergenic | 35.0% | |
| TTATTGCAGAGAGAAATAGG+TGG | + | chr3_4:11929265-11929284 | Msa0490390:intron | 35.0% | |
| AGAGAACTAAAAAGGAACAG+AGG | + | chr3_4:11929397-11929416 | Msa0490390:intron | 35.0% | |
| !! | AGATTTTGATAGGCACAGTT+TGG | - | chr3_4:11929428-11929447 | None:intergenic | 35.0% |
| !! | ATGTTTTTAAAGGTAGGTGC+TGG | + | chr3_4:11929513-11929532 | Msa0490390:intron | 35.0% |
| GATCCAGTTAATCGCATTAT+TGG | + | chr3_4:11929579-11929598 | Msa0490390:CDS | 35.0% | |
| CTTCCAATAATGCGATTAAC+TGG | - | chr3_4:11929585-11929604 | None:intergenic | 35.0% | |
| ATACTCTTACTAGGGACATT+GGG | + | chr3_4:11929743-11929762 | Msa0490390:intron | 35.0% | |
| AGCTGAAAAATCTGTATCAC+CGG | + | chr3_4:11930030-11930049 | Msa0490390:intron | 35.0% | |
| AGTTGACCATTTCTTATCTC+GGG | + | chr3_4:11930143-11930162 | Msa0490390:intron | 35.0% | |
| ! | TTTGAAACAGGCTTTGATTC+TGG | + | chr3_4:11930267-11930286 | Msa0490390:intron | 35.0% |
| ACGACTCAAAAAGTCATCAA+CGG | - | chr3_4:11930477-11930496 | None:intergenic | 35.0% | |
| TATTCAAGAGAGAGTTGAGA+AGG | + | chr3_4:11930520-11930539 | Msa0490390:CDS | 35.0% | |
| GGAGGAAAAAAAGATACCTT+GGG | - | chr3_4:11930592-11930611 | None:intergenic | 35.0% | |
| TTGTCACAATTCCACACATA+CGG | + | chr3_4:11930644-11930663 | Msa0490390:intron | 35.0% | |
| AAAGTAGAAAACCGTATGTG+TGG | - | chr3_4:11930658-11930677 | None:intergenic | 35.0% | |
| CTTCCAAAGAATTCTGCTTT+CGG | + | chr3_4:11930813-11930832 | Msa0490390:CDS | 35.0% | |
| !!! | GAGAGAGAATTTTTTGTGCA+AGG | - | chr3_4:11930939-11930958 | None:intergenic | 35.0% |
| ACAGTACAAGTTCTTCTTTC+TGG | + | chr3_4:11930978-11930997 | Msa0490390:intron | 35.0% | |
| ! | GACAGTTAGAAGTATACACT+CGG | + | chr3_4:11931046-11931065 | Msa0490390:intron | 35.0% |
| !! | AATCTCAAGTTGATGGTCAA+TGG | + | chr3_4:11931421-11931440 | Msa0490390:three_prime_UTR | 35.0% |
| ACAGACATTAGAATGTGCTT+GGG | - | chr3_4:11931499-11931518 | None:intergenic | 35.0% | |
| !!! | TTATGTTGGAAGTGCTTTTG+AGG | + | chr3_4:11931520-11931539 | Msa0490390:three_prime_UTR | 35.0% |
| GTGAGGATAGAGAAAATGTA+TGG | + | chr3_4:11931605-11931624 | Msa0490390:three_prime_UTR | 35.0% | |
| CCACAACCCATTAGAATCAA+AGG | - | chr3_4:11926775-11926794 | None:intergenic | 40.0% | |
| !! | CCTTTGATTCTAATGGGTTG+TGG | + | chr3_4:11926772-11926791 | Msa0490390:CDS | 40.0% |
| !! | TTGATTCTAATGGGTTGTGG+AGG | + | chr3_4:11926775-11926794 | Msa0490390:CDS | 40.0% |
| CTAAAACGCAAATGGGTCAT+CGG | - | chr3_4:11926945-11926964 | None:intergenic | 40.0% | |
| ! | TATTCTTTGGAAGGCATGTC+TGG | + | chr3_4:11927154-11927173 | Msa0490390:intron | 40.0% |
| TGGTGATAGTAAATCTCTGG+TGG | + | chr3_4:11927422-11927441 | Msa0490390:CDS | 40.0% | |
| GCTTCTTGTTAGAACTTTGC+CGG | + | chr3_4:11927481-11927500 | Msa0490390:CDS | 40.0% | |
| GGCGAATCTCTATCAAAACT+TGG | + | chr3_4:11927516-11927535 | Msa0490390:CDS | 40.0% | |
| CAAAAACAAGCCAAGAACAC+TGG | - | chr3_4:11927563-11927582 | None:intergenic | 40.0% | |
| CTTTACCCTATTGTAACCAG+TGG | + | chr3_4:11928051-11928070 | Msa0490390:intron | 40.0% | |
| ! | AAGTGCCACTGGTTACAATA+GGG | - | chr3_4:11928059-11928078 | None:intergenic | 40.0% |
| ACATGGCCATAAATTAGAGG+GGG | - | chr3_4:11928118-11928137 | None:intergenic | 40.0% | |
| ATCATATGGGCAGTTTGATG+CGG | - | chr3_4:11928251-11928270 | None:intergenic | 40.0% | |
| !!! | ACTTGGGTTTGGTGTTTTTG+TGG | + | chr3_4:11928494-11928513 | Msa0490390:intron | 40.0% |
| !!! | CTTGGGTTTGGTGTTTTTGT+GGG | + | chr3_4:11928495-11928514 | Msa0490390:intron | 40.0% |
| !!! | GTTTGGTGTTTTTGTGGGTT+CGG | + | chr3_4:11928500-11928519 | Msa0490390:intron | 40.0% |
| CAATAGGGAACGTATATAGG+CGG | - | chr3_4:11928530-11928549 | None:intergenic | 40.0% | |
| CGGCAAAAGCAAGATACAAT+AGG | - | chr3_4:11928546-11928565 | None:intergenic | 40.0% | |
| CAAGATGCACAAAAACTAGC+CGG | - | chr3_4:11928566-11928585 | None:intergenic | 40.0% | |
| ! | AACTTAGACAGGCTCTAGTT+TGG | - | chr3_4:11929011-11929030 | None:intergenic | 40.0% |
| CAGAGAGAAATAGGTGGAAT+GGG | + | chr3_4:11929271-11929290 | Msa0490390:intron | 40.0% | |
| AGACGAGATTATGCGATTCA+GGG | - | chr3_4:11929556-11929575 | None:intergenic | 40.0% | |
| CGCATTATTGGAAGTTTGAG+TGG | + | chr3_4:11929591-11929610 | Msa0490390:CDS | 40.0% | |
| CATACTCTTACTAGGGACAT+TGG | + | chr3_4:11929742-11929761 | Msa0490390:intron | 40.0% | |
| TACTCTTACTAGGGACATTG+GGG | + | chr3_4:11929744-11929763 | Msa0490390:intron | 40.0% | |
| ATTGGGGTATGTAATGAGTG+AGG | + | chr3_4:11929760-11929779 | Msa0490390:CDS | 40.0% | |
| GTAATGAGTGAGGTTGAAGA+TGG | + | chr3_4:11929770-11929789 | Msa0490390:CDS | 40.0% | |
| ! | TTTTAGCAGCTTGGACAACT+TGG | - | chr3_4:11929808-11929827 | None:intergenic | 40.0% |
| TGGAATGGATGTTGCTAGAA+AGG | + | chr3_4:11929954-11929973 | Msa0490390:CDS | 40.0% | |
| TAAATTTGGCTAAAACGGGC+CGG | - | chr3_4:11930052-11930071 | None:intergenic | 40.0% | |
| CCACACCCAACACATAAATT+TGG | - | chr3_4:11930066-11930085 | None:intergenic | 40.0% | |
| CCAAATTTATGTGTTGGGTG+TGG | + | chr3_4:11930063-11930082 | Msa0490390:intron | 40.0% | |
| GAATGTCCCGAGATAAGAAA+TGG | - | chr3_4:11930152-11930171 | None:intergenic | 40.0% | |
| !! | TTGATTCTGGCTCGAATACT+TGG | + | chr3_4:11930280-11930299 | Msa0490390:CDS | 40.0% |
| GATTGAAAGCTTGTATCCCA+AGG | + | chr3_4:11930430-11930449 | Msa0490390:intron | 40.0% | |
| AAGCTTGTATCCCAAGGAAA+TGG | + | chr3_4:11930436-11930455 | Msa0490390:CDS | 40.0% | |
| AGCTTGTATCCCAAGGAAAT+GGG | + | chr3_4:11930437-11930456 | Msa0490390:CDS | 40.0% | |
| TCATCAACGGTCATTACATC+AGG | - | chr3_4:11930464-11930483 | None:intergenic | 40.0% | |
| !!! | GTTGATGACTTTTTGAGTCG+TGG | + | chr3_4:11930476-11930495 | Msa0490390:CDS | 40.0% |
| ! | CGATATGTCTGTGTCATTGA+GGG | + | chr3_4:11930566-11930585 | Msa0490390:CDS | 40.0% |
| GGGAGGAAAAAAAGATACCT+TGG | - | chr3_4:11930593-11930612 | None:intergenic | 40.0% | |
| TGAACACAGAATATGAAGGG+AGG | - | chr3_4:11930610-11930629 | None:intergenic | 40.0% | |
| CCAACTTCACACCTTGAAAA+AGG | - | chr3_4:11930783-11930802 | None:intergenic | 40.0% | |
| !!! | CCTTTTTCAAGGTGTGAAGT+TGG | + | chr3_4:11930780-11930799 | Msa0490390:intron | 40.0% |
| CTTCCGAAAGCAGAATTCTT+TGG | - | chr3_4:11930819-11930838 | None:intergenic | 40.0% | |
| TCTGCTTTCGGAAGATTAAG+AGG | + | chr3_4:11930825-11930844 | Msa0490390:CDS | 40.0% | |
| AGAACTTGTACTGTACGGAA+GGG | - | chr3_4:11930972-11930991 | None:intergenic | 40.0% | |
| AAGAACTTGTACTGTACGGA+AGG | - | chr3_4:11930973-11930992 | None:intergenic | 40.0% | |
| GAATATCCACGATATCAGCA+AGG | - | chr3_4:11931140-11931159 | None:intergenic | 40.0% | |
| TGCTGATATCGTGGATATTC+AGG | + | chr3_4:11931140-11931159 | Msa0490390:CDS | 40.0% | |
| GAACAAAAACGTTTCCCTCA+AGG | - | chr3_4:11931174-11931193 | None:intergenic | 40.0% | |
| AGACATTAGAATGTGCTTGG+GGG | - | chr3_4:11931497-11931516 | None:intergenic | 40.0% | |
| CAGACATTAGAATGTGCTTG+GGG | - | chr3_4:11931498-11931517 | None:intergenic | 40.0% | |
| CACAGACATTAGAATGTGCT+TGG | - | chr3_4:11931500-11931519 | None:intergenic | 40.0% | |
| ATGATATGTAGGCATGCAAC+TGG | + | chr3_4:11931658-11931677 | Msa0490390:intron | 40.0% | |
| ACGAGACAATGTGTTGGAGA+AGG | - | chr3_4:11926813-11926832 | None:intergenic | 45.0% | |
| CCTGTGAAGAGTGAAGAGAA+CGG | - | chr3_4:11926837-11926856 | None:intergenic | 45.0% | |
| GGACTATGCTTGAGAGTTGT+GGG | + | chr3_4:11927396-11927415 | Msa0490390:CDS | 45.0% | |
| GATATCTACGCCAGTGTTCT+TGG | + | chr3_4:11927550-11927569 | Msa0490390:intron | 45.0% | |
| GCTAGCAGTGCAATCTACAA+AGG | - | chr3_4:11927848-11927867 | None:intergenic | 45.0% | |
| !! | TGCTAGCGCTGACACTATAA+TGG | + | chr3_4:11927861-11927880 | Msa0490390:CDS | 45.0% |
| ! | CAAGTGCCACTGGTTACAAT+AGG | - | chr3_4:11928060-11928079 | None:intergenic | 45.0% |
| AGTCTACCCCCTTTAACCTA+GGG | - | chr3_4:11928449-11928468 | None:intergenic | 45.0% | |
| TAGTCTACCCCCTTTAACCT+AGG | - | chr3_4:11928450-11928469 | None:intergenic | 45.0% | |
| ! | CACTTACAGTTGACTCATGC+CGG | - | chr3_4:11928804-11928823 | None:intergenic | 45.0% |
| ACTAGAGCCTGTCTAAGTTC+TGG | + | chr3_4:11929012-11929031 | Msa0490390:intron | 45.0% | |
| GCAGAGAGAAATAGGTGGAA+TGG | + | chr3_4:11929270-11929289 | Msa0490390:intron | 45.0% | |
| ! | TTAAGGAGCTTTGGCTGATC+TGG | + | chr3_4:11929485-11929504 | Msa0490390:intron | 45.0% |
| CGATTCAGGGATGATATCAC+TGG | - | chr3_4:11929543-11929562 | None:intergenic | 45.0% | |
| CAGACGAGATTATGCGATTC+AGG | - | chr3_4:11929557-11929576 | None:intergenic | 45.0% | |
| CTGAATCGCATAATCTCGTC+TGG | + | chr3_4:11929555-11929574 | Msa0490390:CDS | 45.0% | |
| TGTCCAAGCTGCTAAAAGTC+TGG | + | chr3_4:11929811-11929830 | Msa0490390:CDS | 45.0% | |
| GTCCAAGCTGCTAAAAGTCT+GGG | + | chr3_4:11929812-11929831 | Msa0490390:CDS | 45.0% | |
| TCCAAGCTGCTAAAAGTCTG+GGG | + | chr3_4:11929813-11929832 | Msa0490390:CDS | 45.0% | |
| AGCAATTAGCAAATGGGACC+TGG | - | chr3_4:11929848-11929867 | None:intergenic | 45.0% | |
| TAGCAACATCCATTCCACCA+AGG | - | chr3_4:11929951-11929970 | None:intergenic | 45.0% | |
| TATGTGTTGGGTGTGGCTAA+TGG | + | chr3_4:11930070-11930089 | Msa0490390:intron | 45.0% | |
| ATGTGTTGGGTGTGGCTAAT+GGG | + | chr3_4:11930071-11930090 | Msa0490390:intron | 45.0% | |
| GCTTGTATCCCAAGGAAATG+GGG | + | chr3_4:11930438-11930457 | Msa0490390:CDS | 45.0% | |
| GTTGAGAAGGCAGCTTCAAA+CGG | + | chr3_4:11930533-11930552 | Msa0490390:CDS | 45.0% | |
| ! | GCGATATGTCTGTGTCATTG+AGG | + | chr3_4:11930565-11930584 | Msa0490390:CDS | 45.0% |
| ! | GCAAGGTCAAGCCTCTAAAA+TGG | - | chr3_4:11930922-11930941 | None:intergenic | 45.0% |
| ! | AACCAACCGCTGGTTATTCA+AGG | + | chr3_4:11931078-11931097 | Msa0490390:CDS | 45.0% |
| !! | CTCAAGTTGATGGTCAATGG+AGG | + | chr3_4:11931424-11931443 | Msa0490390:three_prime_UTR | 45.0% |
| TGGTCAATGGAGGCTTCATA+TGG | + | chr3_4:11931434-11931453 | Msa0490390:three_prime_UTR | 45.0% | |
| CAATGGAGGCTTCATATGGA+TGG | + | chr3_4:11931438-11931457 | Msa0490390:three_prime_UTR | 45.0% | |
| GACATTAGAATGTGCTTGGG+GGG | - | chr3_4:11931496-11931515 | None:intergenic | 45.0% | |
| !! | CTAATGGGTTGTGGAGGAGT+TGG | + | chr3_4:11926781-11926800 | Msa0490390:CDS | 50.0% |
| AACGGCACGAGACAATGTGT+TGG | - | chr3_4:11926819-11926838 | None:intergenic | 50.0% | |
| CCGTTCTCTTCACTCTTCAC+AGG | + | chr3_4:11926834-11926853 | Msa0490390:CDS | 50.0% | |
| GGGACTATGCTTGAGAGTTG+TGG | + | chr3_4:11927395-11927414 | Msa0490390:intron | 50.0% | |
| TGCTTGAGAGTTGTGGGAGT+TGG | + | chr3_4:11927402-11927421 | Msa0490390:CDS | 50.0% | |
| !! | GAACTTTGCCGGCTCAAGAA+TGG | + | chr3_4:11927492-11927511 | Msa0490390:CDS | 50.0% |
| ATTCGCCACCATTCTTGAGC+CGG | - | chr3_4:11927503-11927522 | None:intergenic | 50.0% | |
| TTTGTGCATCCGGAATCCGA+AGG | + | chr3_4:11927654-11927673 | Msa0490390:CDS | 50.0% | |
| TGCACACAGCCCTAGGTTAA+AGG | + | chr3_4:11928437-11928456 | Msa0490390:intron | 50.0% | |
| GCACACAGCCCTAGGTTAAA+GGG | + | chr3_4:11928438-11928457 | Msa0490390:intron | 50.0% | |
| CACACAGCCCTAGGTTAAAG+GGG | + | chr3_4:11928439-11928458 | Msa0490390:intron | 50.0% | |
| ACACAGCCCTAGGTTAAAGG+GGG | + | chr3_4:11928440-11928459 | Msa0490390:intron | 50.0% | |
| TTCCACTAGGTGCAGTCACT+TGG | + | chr3_4:11928477-11928496 | Msa0490390:intron | 50.0% | |
| TCCACTAGGTGCAGTCACTT+GGG | + | chr3_4:11928478-11928497 | Msa0490390:intron | 50.0% | |
| TAGGTGCAGTCACTTGGGTT+TGG | + | chr3_4:11928483-11928502 | Msa0490390:intron | 50.0% | |
| TGGCATATCCACGTCGTATC+CGG | + | chr3_4:11928782-11928801 | Msa0490390:CDS | 50.0% | |
| ! | ACCCCAGACTTTTAGCAGCT+TGG | - | chr3_4:11929817-11929836 | None:intergenic | 50.0% |
| TGTGTTGGGTGTGGCTAATG+GGG | + | chr3_4:11930072-11930091 | Msa0490390:intron | 50.0% | |
| TGGCTCGAATACTTGGTCGT+CGG | + | chr3_4:11930287-11930306 | Msa0490390:CDS | 50.0% | |
| ACATCAGGCCCCATTTCCTT+GGG | - | chr3_4:11930449-11930468 | None:intergenic | 50.0% | |
| TACATCAGGCCCCATTTCCT+TGG | - | chr3_4:11930450-11930469 | None:intergenic | 50.0% | |
| GTGCTATAGTAACCAACCGC+TGG | + | chr3_4:11931068-11931087 | Msa0490390:CDS | 50.0% | |
| CACCTTGAATAACCAGCGGT+TGG | - | chr3_4:11931083-11931102 | None:intergenic | 50.0% | |
| CCAGCACCTTGAATAACCAG+CGG | - | chr3_4:11931087-11931106 | None:intergenic | 50.0% | |
| !! | GTTATTCAAGGTGCTGGAGC+TGG | + | chr3_4:11931090-11931109 | Msa0490390:CDS | 50.0% |
| TGGTGTCCTTGCTGATATCG+TGG | + | chr3_4:11931131-11931150 | Msa0490390:CDS | 50.0% | |
| AGCTTCTTGGTATCTTGCCC+TGG | + | chr3_4:11931221-11931240 | Msa0490390:intron | 50.0% | |
| AGCACGTCAGCAAGATTCCA+GGG | - | chr3_4:11931241-11931260 | None:intergenic | 50.0% | |
| AAGCACGTCAGCAAGATTCC+AGG | - | chr3_4:11931242-11931261 | None:intergenic | 50.0% | |
| !! | TACCACTGCCGATTCCTATG+AGG | + | chr3_4:11931708-11931727 | Msa0490390:three_prime_UTR | 50.0% |
| ! | TGACCTGTGAGTGTCGTGTC+CGG | + | chr3_4:11927250-11927269 | Msa0490390:intron | 55.0% |
| TGAAGCACGGACACAGACAC+CGG | - | chr3_4:11927272-11927291 | None:intergenic | 55.0% | |
| !! | CTTTGCCGGCTCAAGAATGG+TGG | + | chr3_4:11927495-11927514 | Msa0490390:CDS | 55.0% |
| AACCTAGGGCTGTGTGCACT+TGG | - | chr3_4:11928435-11928454 | None:intergenic | 55.0% | |
| ACCCAAGTGACTGCACCTAG+TGG | - | chr3_4:11928482-11928501 | None:intergenic | 55.0% | |
| GCTTGGACAACTTGGCTCAG+TGG | - | chr3_4:11929800-11929819 | None:intergenic | 55.0% | |
| ! | AGTCTGGGGTACACTGAACC+AGG | + | chr3_4:11929827-11929846 | Msa0490390:CDS | 55.0% |
| ATTCCACCAAGGTCGTCACG+CGG | - | chr3_4:11929940-11929959 | None:intergenic | 55.0% | |
| ! | TCTGTGTCATTGAGGGCCCA+AGG | + | chr3_4:11930573-11930592 | Msa0490390:CDS | 55.0% |
| ! | CCGCTGGTTATTCAAGGTGC+TGG | + | chr3_4:11931084-11931103 | Msa0490390:CDS | 55.0% |
| GGAAATGACACGACTGCAGC+TGG | + | chr3_4:11931111-11931130 | Msa0490390:CDS | 55.0% | |
| !! | GGGGGAAAAGAGTGCTTCTC+AGG | - | chr3_4:11931478-11931497 | None:intergenic | 55.0% |
| ACACCGGACACGACACTCAC+AGG | - | chr3_4:11927256-11927275 | None:intergenic | 60.0% | |
| GTCCAAGTGCACACAGCCCT+AGG | + | chr3_4:11928430-11928449 | Msa0490390:intron | 60.0% | |
| GACTCATGCCGGATACGACG+TGG | - | chr3_4:11928793-11928812 | None:intergenic | 60.0% | |
| GCGTGACGACCTTGGTGGAA+TGG | + | chr3_4:11929939-11929958 | Msa0490390:CDS | 60.0% | |
| GCAGATCCGCGTGACGACCT+TGG | + | chr3_4:11929931-11929950 | Msa0490390:intron | 65.0% | |
| GATCCGCGTGACGACCTTGG+TGG | + | chr3_4:11929934-11929953 | Msa0490390:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 11926566 | 11931731 | 11926566 | ID=Msa0490390;Name=Msa0490390 |
| chr3_4 | mRNA | 11926566 | 11931731 | 11926566 | ID=Msa0490390-mRNA-1;Parent=Msa0490390;Name=Msa0490390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=194|1|1|1|0.84|0.78|14|336|376 |
| chr3_4 | exon | 11926566 | 11926855 | 11926566 | ID=Msa0490390-mRNA-1:exon:3669;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11927396 | 11927546 | 11927396 | ID=Msa0490390-mRNA-1:exon:3670;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11927640 | 11927717 | 11927640 | ID=Msa0490390-mRNA-1:exon:3671;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11927839 | 11927954 | 11927839 | ID=Msa0490390-mRNA-1:exon:3672;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11928763 | 11928816 | 11928763 | ID=Msa0490390-mRNA-1:exon:3673;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11929525 | 11929612 | 11929525 | ID=Msa0490390-mRNA-1:exon:3674;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11929756 | 11929848 | 11929756 | ID=Msa0490390-mRNA-1:exon:3675;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11929935 | 11929975 | 11929935 | ID=Msa0490390-mRNA-1:exon:3676;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11930277 | 11930330 | 11930277 | ID=Msa0490390-mRNA-1:exon:3677;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11930431 | 11930594 | 11930431 | ID=Msa0490390-mRNA-1:exon:3678;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11930791 | 11930860 | 11930791 | ID=Msa0490390-mRNA-1:exon:3679;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11931051 | 11931216 | 11931051 | ID=Msa0490390-mRNA-1:exon:3680;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11931399 | 11931655 | 11931399 | ID=Msa0490390-mRNA-1:exon:3681;Parent=Msa0490390-mRNA-1 |
| chr3_4 | exon | 11931693 | 11931731 | 11931693 | ID=Msa0490390-mRNA-1:exon:3682;Parent=Msa0490390-mRNA-1 |
| chr3_4 | five_prime_UTR | 11926566 | 11926759 | 11926566 | ID=Msa0490390-mRNA-1:five_prime_utr;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11926760 | 11926855 | 11926760 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11927396 | 11927546 | 11927396 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11927640 | 11927717 | 11927640 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11927839 | 11927954 | 11927839 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11928763 | 11928816 | 11928763 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11929525 | 11929612 | 11929525 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11929756 | 11929848 | 11929756 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11929935 | 11929975 | 11929935 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11930277 | 11930330 | 11930277 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11930431 | 11930594 | 11930431 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11930791 | 11930860 | 11930791 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | CDS | 11931051 | 11931176 | 11931051 | ID=Msa0490390-mRNA-1:cds;Parent=Msa0490390-mRNA-1 |
| chr3_4 | three_prime_UTR | 11931177 | 11931216 | 11931177 | ID=Msa0490390-mRNA-1:three_prime_utr;Parent=Msa0490390-mRNA-1 |
| chr3_4 | three_prime_UTR | 11931399 | 11931655 | 11931399 | ID=Msa0490390-mRNA-1:three_prime_utr;Parent=Msa0490390-mRNA-1 |
| chr3_4 | three_prime_UTR | 11931693 | 11931731 | 11931693 | ID=Msa0490390-mRNA-1:three_prime_utr;Parent=Msa0490390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
