AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549960 MtrunA17_Chr4g0034821 96.013 301 12 0 1 301 1 301 0.0 611
Msa0549960 MtrunA17_Chr3g0144451 68.000 275 77 1 27 301 22 285 7.93e-136 385
Msa0549960 MtrunA17_Chr3g0138231 70.683 249 71 1 55 301 28 276 1.14e-130 372
Msa0549960 MtrunA17_Chr3g0144421 46.909 275 143 2 19 291 29 302 4.13e-92 275
Msa0549960 MtrunA17_Chr3g0144391 46.460 226 118 1 66 291 283 505 1.19e-69 224
Msa0549960 MtrunA17_Chr4g0034451 43.096 239 131 3 55 291 291 526 7.39e-68 220
Msa0549960 MtrunA17_Chr3g0144411 44.690 226 122 1 66 291 316 538 9.46e-67 218
Msa0549960 MtrunA17_Chr4g0034731 43.478 230 125 4 64 291 206 432 2.12e-66 214
Msa0549960 MtrunA17_Chr4g0034721 46.119 219 113 4 75 291 361 576 4.68e-64 211
Msa0549960 MtrunA17_Chr4g0034691 43.836 219 118 3 75 291 493 708 1.86e-60 204
Msa0549960 MtrunA17_Chr1g0147271 41.850 227 127 4 67 292 163 385 1.29e-59 195
Msa0549960 MtrunA17_Chr3g0139431 43.668 229 121 5 67 292 99 322 1.16e-58 190
Msa0549960 MtrunA17_Chr1g0147301 41.667 228 127 5 67 292 62 285 1.01e-56 184
Msa0549960 MtrunA17_Chr6g0485051 44.019 209 111 4 87 292 1 206 7.41e-56 179
Msa0549960 MtrunA17_Chr1g0147291 40.529 227 127 5 67 292 48 267 4.00e-55 179
Msa0549960 MtrunA17_Chr1g0147321 40.179 224 126 5 67 289 19 235 2.68e-54 177
Msa0549960 MtrunA17_Chr1g0146631 41.410 227 126 4 67 292 105 325 3.59e-54 179
Msa0549960 MtrunA17_Chr1g0147311 41.071 224 126 5 71 292 137 356 1.44e-53 178
Msa0549960 MtrunA17_Chr1g0147331 40.969 227 127 4 67 292 105 325 2.69e-53 177
Msa0549960 MtrunA17_Chr1g0147241 39.823 226 130 4 67 292 94 313 1.26e-51 172
Msa0549960 MtrunA17_Chr1g0147261 38.739 222 130 4 71 292 85 300 1.87e-50 169
Msa0549960 MtrunA17_Chr1g0147251 37.826 230 130 5 63 292 27 243 2.48e-49 164
Msa0549960 MtrunA17_Chr8g0365361 33.484 221 132 7 75 289 181 392 1.24e-33 127
Msa0549960 MtrunA17_Chr8g0365381 33.032 221 133 7 75 289 429 640 5.18e-31 122
Msa0549960 MtrunA17_Chr8g0365401 33.333 222 133 7 75 290 412 624 1.00e-30 121
Msa0549960 MtrunA17_Chr5g0413591 32.301 226 130 7 75 290 415 627 4.21e-29 116
Msa0549960 MtrunA17_Chr3g0117791 31.416 226 132 7 75 290 413 625 5.99e-26 107
Msa0549960 MtrunA17_Chr4g0034051 50.633 79 37 2 215 291 1 79 6.58e-23 90.5
Msa0549960 MtrunA17_Chr4g0076231 30.573 157 104 3 135 289 3 156 3.62e-22 90.9
Msa0549960 MtrunA17_Chr8g0355311 34.868 152 89 5 144 295 53 194 1.60e-19 84.7
Msa0549960 MtrunA17_Chr8g0355861 33.987 153 91 4 144 296 123 265 3.79e-18 82.4
Msa0549960 MtrunA17_Chr5g0412991 28.959 221 144 6 74 289 196 408 3.99e-18 84.0
Msa0549960 MtrunA17_Chr5g0412991 27.586 174 107 5 112 273 18 184 7.83e-13 68.6
Msa0549960 MtrunA17_Chr5g0412981 28.959 221 144 6 74 289 196 408 4.10e-18 84.0
Msa0549960 MtrunA17_Chr5g0412981 27.586 174 107 5 112 273 18 184 1.41e-13 70.5
Msa0549960 MtrunA17_Chr8g0355871 35.811 148 85 6 144 291 85 222 5.82e-18 81.3
Msa0549960 MtrunA17_Chr2g0318901 34.028 144 85 6 150 293 128 261 1.11e-17 81.3
Msa0549960 MtrunA17_Chr2g0318871 29.730 222 120 9 75 293 73 261 1.16e-17 81.3
Msa0549960 MtrunA17_Chr8g0355321 34.043 141 83 5 151 291 172 302 8.41e-17 79.3
Msa0549960 MtrunA17_Chr5g0412951 27.368 190 119 5 112 289 25 207 8.43e-17 77.4
Msa0549960 MtrunA17_Chr8g0355331 34.043 141 83 5 151 291 291 421 1.62e-16 79.3
Msa0549960 MtrunA17_Chr8g0355841 34.483 145 85 6 151 295 379 513 1.39e-15 77.0
Msa0549960 MtrunA17_Chr1g0168781 31.126 151 89 5 144 291 121 259 1.64e-14 72.0
Msa0549960 MtrunA17_Chr8g0355831 33.784 148 88 5 144 291 214 351 7.26e-14 71.2
Msa0549960 MtrunA17_Chr8g0371951 38.095 84 47 3 200 280 6 87 1.63e-12 62.4
Msa0549960 MtrunA17_Chr2g0318931 30.345 145 89 6 151 293 138 272 9.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549960 AT1G49320.1 45.415 229 120 2 69 292 52 280 2.75e-68 214
Msa0549960 AT5G25610.1 40.000 225 130 4 67 289 168 389 6.43e-51 172
Msa0549960 AT1G70370.2 33.628 226 127 6 75 290 411 623 2.53e-30 120
Msa0549960 AT1G70370.1 33.628 226 127 6 75 290 411 623 2.53e-30 120
Msa0549960 AT1G23760.1 32.353 204 120 5 92 290 429 619 6.45e-28 113
Msa0549960 AT1G60390.1 30.222 225 134 7 75 289 409 620 3.73e-26 108

Find 72 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCCTGAACTTCCAATTT+TGG 0.159002 4_1:+45291323 None:intergenic
TTTCATATGGGTTCCAAAAT+TGG 0.163908 4_1:-45291336 Msa0549960:CDS
CATGTTTCATTTCAGGTTCT+TGG 0.168453 4_1:-45291407 Msa0549960:CDS
ACATGGTCATGTTTCATTTC+AGG 0.187970 4_1:-45291414 Msa0549960:CDS
GGAAGTTTGTTCAAAGAAAA+AGG 0.203933 4_1:+45291860 None:intergenic
GATTTCACTCAAACCATTCT+TGG 0.227601 4_1:-45291701 Msa0549960:CDS
GTTTCACTTGTTGGTGATAA+TGG 0.231201 4_1:-45291488 Msa0549960:CDS
TATTCTCACTTTCTTGACTA+TGG 0.275068 4_1:+45291522 None:intergenic
CTTCAATTTCCCCTAAGTTT+TGG 0.302168 4_1:-45291907 Msa0549960:CDS
GAATTTCACTTCTCCTTTGA+TGG 0.307340 4_1:+45291751 None:intergenic
GGAAATTGAAGGGTCTCTTT+TGG 0.307777 4_1:+45291919 None:intergenic
TTTCACTTGTTGGTGATAAT+GGG 0.318089 4_1:-45291487 Msa0549960:CDS
CTGAAAAGTGACACTTGATT+TGG 0.319135 4_1:+45291637 None:intergenic
TGTTGGTGATAATGGGGATT+TGG 0.320872 4_1:-45291480 Msa0549960:CDS
TGATATGATCATGTAGATTT+AGG 0.322595 4_1:-45292393 Msa0549960:five_prime_UTR
GGTTCCAAAATTGGAAGTTC+AGG 0.332466 4_1:-45291327 Msa0549960:CDS
CTTTGGCTTGTGGAGAGTCT+TGG 0.342138 4_1:+45291810 None:intergenic
TTCCAGCTGATAATTTCATA+TGG 0.349895 4_1:-45291349 Msa0549960:CDS
GTGTGACATGCCACCATCTT+TGG 0.354478 4_1:+45291575 None:intergenic
TCATATGGATACTTCTCATT+GGG 0.365983 4_1:-45291438 Msa0549960:CDS
TTGTCTCTTGGCCAAAACTT+AGG 0.371649 4_1:+45291896 None:intergenic
TAAATCTACATGATCATATC+AGG 0.372629 4_1:+45292395 None:intergenic
AAGGGTATCTACCATTGCTT+TGG 0.378961 4_1:+45291793 None:intergenic
TGTCTCTTGGCCAAAACTTA+GGG 0.382523 4_1:+45291897 None:intergenic
CAGGTTCTTGGTGTTGTGCC+AGG 0.389898 4_1:-45291395 Msa0549960:CDS
ATTTATTGAGAATAATGTAT+TGG 0.396779 4_1:-45291149 Msa0549960:three_prime_UTR
TTTGGCTTGTGGAGAGTCTT+GGG 0.402514 4_1:+45291811 None:intergenic
TCTACCATTGCTTTGGCTTG+TGG 0.404591 4_1:+45291800 None:intergenic
TGGCAATAGAAAACAGCATA+AGG 0.408624 4_1:+45291542 None:intergenic
ATATATAGAGTTTCACTTGT+TGG 0.415560 4_1:-45291497 Msa0549960:CDS
AATTTCACTTCTCCTTTGAT+GGG 0.416780 4_1:+45291752 None:intergenic
GTCATATGGATACTTCTCAT+TGG 0.421442 4_1:-45291439 Msa0549960:CDS
ACCTTGAAAGACTTAAAAGT+TGG 0.422790 4_1:-45291965 Msa0549960:CDS
AGTGAATCAGCTTTGTCTCT+TGG 0.424727 4_1:+45291884 None:intergenic
TCACATGGACCCTTCTGTTA+TGG 0.432901 4_1:-45291996 Msa0549960:CDS
AGCTATGGTTGTTTGTCATA+TGG 0.433565 4_1:-45291453 Msa0549960:CDS
GTTTGCTCTCACATTCTGTA+AGG 0.443520 4_1:+45291774 None:intergenic
AGGATCTCAGATATAAACTT+TGG 0.448641 4_1:+45292306 None:intergenic
TGGGGATTTGGTGGAAGCTA+TGG 0.459502 4_1:-45291468 Msa0549960:CDS
TCCAGCTGATAATTTCATAT+GGG 0.459838 4_1:-45291348 Msa0549960:CDS
TGACACACATTAGAACTTCC+TGG 0.463418 4_1:+45291377 None:intergenic
CCTTGAAAGACTTAAAAGTT+GGG 0.465337 4_1:-45291964 Msa0549960:CDS
TGGTGATAATGGGGATTTGG+TGG 0.472374 4_1:-45291477 Msa0549960:CDS
TGTTGAAATAAGTACTCTCC+TGG 0.484120 4_1:-45291223 Msa0549960:three_prime_UTR
CTATATTAGACAAGATTATG+AGG 0.485497 4_1:-45291607 Msa0549960:CDS
TGGAACAGAAAGCAAACTCT+TGG 0.493149 4_1:-45292089 Msa0549960:CDS
CAAAACTTAGGGGAAATTGA+AGG 0.500601 4_1:+45291908 None:intergenic
GGCAATAGAAAACAGCATAA+GGG 0.512658 4_1:+45291543 None:intergenic
ATAGTCAAGAAAGTGAGAAT+AGG 0.513839 4_1:-45291520 Msa0549960:CDS
GTTCCAAAATTGGAAGTTCA+GGG 0.515552 4_1:-45291326 Msa0549960:CDS
ACCCATATGAAATTATCAGC+TGG 0.518839 4_1:+45291347 None:intergenic
GAGGATTTCAGCTCCAAAGA+TGG 0.529926 4_1:-45291588 Msa0549960:CDS
TAGAAAACAGCATAAGGGTA+AGG 0.533811 4_1:+45291548 None:intergenic
TTTGCTCTCACATTCTGTAA+GGG 0.540182 4_1:+45291775 None:intergenic
TTCACTTGTTGGTGATAATG+GGG 0.549004 4_1:-45291486 Msa0549960:CDS
GATACTTCTCATTGGGGACA+TGG 0.551200 4_1:-45291431 Msa0549960:CDS
AGCAGAGCAAGAGAATTAGC+TGG 0.551256 4_1:-45292109 Msa0549960:CDS
GTACTAGTAGATGAAGAAAG+AGG 0.558137 4_1:+45292286 None:intergenic
GTCTCTTGGCCAAAACTTAG+GGG 0.574379 4_1:+45291898 None:intergenic
AGAAACTCAAACATCAAACT+AGG 0.581905 4_1:+45291253 None:intergenic
GTGAAGAACACCATAACAGA+AGG 0.585539 4_1:+45291986 None:intergenic
TGTGAGAGCAAACCCATCAA+AGG 0.590120 4_1:-45291764 Msa0549960:CDS
CTCTCCACAAGCCAAAGCAA+TGG 0.615953 4_1:-45291804 Msa0549960:CDS
AAAACTTAGGGGAAATTGAA+GGG 0.620878 4_1:+45291909 None:intergenic
ATCTCTGTCTTTCTACACAA+AGG 0.629482 4_1:-45292369 Msa0549960:five_prime_UTR
CATATGGATACTTCTCATTG+GGG 0.635326 4_1:-45291437 Msa0549960:CDS
GTTGAAATAAGTACTCTCCT+GGG 0.635439 4_1:-45291222 Msa0549960:three_prime_UTR
TGCACATAATCACAATCACA+TGG 0.646984 4_1:-45292011 Msa0549960:CDS
GATTTCAGCTCCAAAGATGG+TGG 0.658692 4_1:-45291585 Msa0549960:CDS
TGAAGAACACCATAACAGAA+GGG 0.675219 4_1:+45291987 None:intergenic
TCATCTACTAGTACTAATCA+CGG 0.682328 4_1:-45292277 Msa0549960:intron
TAGCATCATTACATGTACCC+AGG 0.694629 4_1:+45291205 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATAGTATTAAAAAAA+TGG - chr4_1:45292396-45292415 Msa0549960:five_prime_UTR 10.0%
!!! GTTTTATAGTATTAAAAAAA+TGG - chr4_1:45292396-45292415 Msa0549960:five_prime_UTR 10.0%
!!! TTTCTTTTAGCATATAATAT+TGG + chr4_1:45291077-45291096 None:intergenic 15.0%
!!! TCTATTTCTATATTCAAATA+TGG - chr4_1:45291292-45291311 Msa0549960:exon 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG - chr4_1:45291370-45291389 Msa0549960:CDS 15.0%
!! ATTTATTGAGAATAATGTAT+TGG - chr4_1:45292354-45292373 Msa0549960:five_prime_UTR 15.0%
!! TTGTATCATAAAGATAAAAT+GGG - chr4_1:45292439-45292458 Msa0549960:five_prime_UTR 15.0%
!!! TTTCTTTTAGCATATAATAT+TGG + chr4_1:45291077-45291096 None:intergenic 15.0%
!!! TCTATTTCTATATTCAAATA+TGG - chr4_1:45291292-45291311 Msa0549960:exon 15.0%
!!! AAATTTTTGCAGATTTTTTA+TGG - chr4_1:45291370-45291389 Msa0549960:CDS 15.0%
!! ATTTATTGAGAATAATGTAT+TGG - chr4_1:45292354-45292373 Msa0549960:five_prime_UTR 15.0%
!!! ATTTTTTTCTTTCCTTTTCT+TGG - chr4_1:45291266-45291285 Msa0549960:three_prime_UTR 20.0%
!! CTTGTATCATAAAGATAAAA+TGG - chr4_1:45292438-45292457 Msa0549960:five_prime_UTR 20.0%
!!! ATTTTTTTCTTTCCTTTTCT+TGG - chr4_1:45291266-45291285 Msa0549960:three_prime_UTR 20.0%
! TAAATCTACATGATCATATC+AGG + chr4_1:45291111-45291130 None:intergenic 25.0%
! TGATATGATCATGTAGATTT+AGG - chr4_1:45291110-45291129 Msa0549960:three_prime_UTR 25.0%
! ATCATTTGAAAAACCAAGAA+TGG + chr4_1:45291818-45291837 None:intergenic 25.0%
! CTATATTAGACAAGATTATG+AGG - chr4_1:45291896-45291915 Msa0549960:CDS 25.0%
! ATATATAGAGTTTCACTTGT+TGG - chr4_1:45292006-45292025 Msa0549960:CDS 25.0%
! TAAATCTACATGATCATATC+AGG + chr4_1:45291111-45291130 None:intergenic 25.0%
! TGATATGATCATGTAGATTT+AGG - chr4_1:45291110-45291129 Msa0549960:three_prime_UTR 25.0%
! ATCATTTGAAAAACCAAGAA+TGG + chr4_1:45291818-45291837 None:intergenic 25.0%
! CTATATTAGACAAGATTATG+AGG - chr4_1:45291896-45291915 Msa0549960:CDS 25.0%
! ATATATAGAGTTTCACTTGT+TGG - chr4_1:45292006-45292025 Msa0549960:CDS 25.0%
AGGATCTCAGATATAAACTT+TGG + chr4_1:45291200-45291219 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG - chr4_1:45291226-45291245 Msa0549960:three_prime_UTR 30.0%
AGAAATAGAGTTCCAAGAAA+AGG + chr4_1:45291281-45291300 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG - chr4_1:45291538-45291557 Msa0549960:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG - chr4_1:45291539-45291558 Msa0549960:CDS 30.0%
AAAACTTAGGGGAAATTGAA+GGG + chr4_1:45291597-45291616 None:intergenic 30.0%
! GGAAGTTTGTTCAAAGAAAA+AGG + chr4_1:45291646-45291665 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG + chr4_1:45291754-45291773 None:intergenic 30.0%
TATTCTCACTTTCTTGACTA+TGG + chr4_1:45291984-45292003 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG - chr4_1:45291983-45292002 Msa0549960:CDS 30.0%
!! TTTCACTTGTTGGTGATAAT+GGG - chr4_1:45292016-45292035 Msa0549960:CDS 30.0%
TCATATGGATACTTCTCATT+GGG - chr4_1:45292065-45292084 Msa0549960:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG - chr4_1:45292154-45292173 Msa0549960:intron 30.0%
TCCAGCTGATAATTTCATAT+GGG - chr4_1:45292155-45292174 Msa0549960:intron 30.0%
TTTCATATGGGTTCCAAAAT+TGG - chr4_1:45292167-45292186 Msa0549960:intron 30.0%
AGAAACTCAAACATCAAACT+AGG + chr4_1:45292253-45292272 None:intergenic 30.0%
AGGATCTCAGATATAAACTT+TGG + chr4_1:45291200-45291219 None:intergenic 30.0%
TCATCTACTAGTACTAATCA+CGG - chr4_1:45291226-45291245 Msa0549960:three_prime_UTR 30.0%
AGAAATAGAGTTCCAAGAAA+AGG + chr4_1:45291281-45291300 None:intergenic 30.0%
ACCTTGAAAGACTTAAAAGT+TGG - chr4_1:45291538-45291557 Msa0549960:CDS 30.0%
CCTTGAAAGACTTAAAAGTT+GGG - chr4_1:45291539-45291558 Msa0549960:CDS 30.0%
AAAACTTAGGGGAAATTGAA+GGG + chr4_1:45291597-45291616 None:intergenic 30.0%
! GGAAGTTTGTTCAAAGAAAA+AGG + chr4_1:45291646-45291665 None:intergenic 30.0%
AATTTCACTTCTCCTTTGAT+GGG + chr4_1:45291754-45291773 None:intergenic 30.0%
TATTCTCACTTTCTTGACTA+TGG + chr4_1:45291984-45292003 None:intergenic 30.0%
ATAGTCAAGAAAGTGAGAAT+AGG - chr4_1:45291983-45292002 Msa0549960:CDS 30.0%
!! TTTCACTTGTTGGTGATAAT+GGG - chr4_1:45292016-45292035 Msa0549960:CDS 30.0%
TCATATGGATACTTCTCATT+GGG - chr4_1:45292065-45292084 Msa0549960:CDS 30.0%
TTCCAGCTGATAATTTCATA+TGG - chr4_1:45292154-45292173 Msa0549960:intron 30.0%
TCCAGCTGATAATTTCATAT+GGG - chr4_1:45292155-45292174 Msa0549960:intron 30.0%
TTTCATATGGGTTCCAAAAT+TGG - chr4_1:45292167-45292186 Msa0549960:intron 30.0%
AGAAACTCAAACATCAAACT+AGG + chr4_1:45292253-45292272 None:intergenic 30.0%
ATCTCTGTCTTTCTACACAA+AGG - chr4_1:45291134-45291153 Msa0549960:three_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG + chr4_1:45291220-45291239 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG + chr4_1:45291347-45291366 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG - chr4_1:45291492-45291511 Msa0549960:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG + chr4_1:45291519-45291538 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG + chr4_1:45291542-45291561 None:intergenic 35.0%
! GAAATTGAAGGGTCTCTTTT+GGG + chr4_1:45291586-45291605 None:intergenic 35.0%
CAAAACTTAGGGGAAATTGA+AGG + chr4_1:45291598-45291617 None:intergenic 35.0%
! CTTCAATTTCCCCTAAGTTT+TGG - chr4_1:45291596-45291615 Msa0549960:CDS 35.0%
!! GAGAAGATTTTGAGAAGAGT+TGG + chr4_1:45291667-45291686 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG + chr4_1:45291731-45291750 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG + chr4_1:45291755-45291774 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG - chr4_1:45291802-45291821 Msa0549960:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG + chr4_1:45291869-45291888 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG + chr4_1:45291958-45291977 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG + chr4_1:45291963-45291982 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG + chr4_1:45291964-45291983 None:intergenic 35.0%
!! GTTTCACTTGTTGGTGATAA+TGG - chr4_1:45292015-45292034 Msa0549960:CDS 35.0%
!! TTCACTTGTTGGTGATAATG+GGG - chr4_1:45292017-45292036 Msa0549960:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG - chr4_1:45292050-45292069 Msa0549960:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG - chr4_1:45292064-45292083 Msa0549960:CDS 35.0%
CATATGGATACTTCTCATTG+GGG - chr4_1:45292066-45292085 Msa0549960:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG - chr4_1:45292089-45292108 Msa0549960:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG - chr4_1:45292096-45292115 Msa0549960:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG + chr4_1:45292159-45292178 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG - chr4_1:45292177-45292196 Msa0549960:intron 35.0%
TGTTGAAATAAGTACTCTCC+TGG - chr4_1:45292280-45292299 Msa0549960:CDS 35.0%
GTTGAAATAAGTACTCTCCT+GGG - chr4_1:45292281-45292300 Msa0549960:CDS 35.0%
ATCTCTGTCTTTCTACACAA+AGG - chr4_1:45291134-45291153 Msa0549960:three_prime_UTR 35.0%
GTACTAGTAGATGAAGAAAG+AGG + chr4_1:45291220-45291239 None:intergenic 35.0%
! GAGCTTTGCAATTTAGAGTA+AGG + chr4_1:45291347-45291366 None:intergenic 35.0%
TGCACATAATCACAATCACA+TGG - chr4_1:45291492-45291511 Msa0549960:CDS 35.0%
TGAAGAACACCATAACAGAA+GGG + chr4_1:45291519-45291538 None:intergenic 35.0%
!! CCCAACTTTTAAGTCTTTCA+AGG + chr4_1:45291542-45291561 None:intergenic 35.0%
! GAAATTGAAGGGTCTCTTTT+GGG + chr4_1:45291586-45291605 None:intergenic 35.0%
CAAAACTTAGGGGAAATTGA+AGG + chr4_1:45291598-45291617 None:intergenic 35.0%
! CTTCAATTTCCCCTAAGTTT+TGG - chr4_1:45291596-45291615 Msa0549960:CDS 35.0%
!! GAGAAGATTTTGAGAAGAGT+TGG + chr4_1:45291667-45291686 None:intergenic 35.0%
TTTGCTCTCACATTCTGTAA+GGG + chr4_1:45291731-45291750 None:intergenic 35.0%
GAATTTCACTTCTCCTTTGA+TGG + chr4_1:45291755-45291774 None:intergenic 35.0%
GATTTCACTCAAACCATTCT+TGG - chr4_1:45291802-45291821 Msa0549960:CDS 35.0%
CTGAAAAGTGACACTTGATT+TGG + chr4_1:45291869-45291888 None:intergenic 35.0%
TAGAAAACAGCATAAGGGTA+AGG + chr4_1:45291958-45291977 None:intergenic 35.0%
GGCAATAGAAAACAGCATAA+GGG + chr4_1:45291963-45291982 None:intergenic 35.0%
TGGCAATAGAAAACAGCATA+AGG + chr4_1:45291964-45291983 None:intergenic 35.0%
!! GTTTCACTTGTTGGTGATAA+TGG - chr4_1:45292015-45292034 Msa0549960:CDS 35.0%
!! TTCACTTGTTGGTGATAATG+GGG - chr4_1:45292017-45292036 Msa0549960:CDS 35.0%
AGCTATGGTTGTTTGTCATA+TGG - chr4_1:45292050-45292069 Msa0549960:CDS 35.0%
GTCATATGGATACTTCTCAT+TGG - chr4_1:45292064-45292083 Msa0549960:CDS 35.0%
CATATGGATACTTCTCATTG+GGG - chr4_1:45292066-45292085 Msa0549960:CDS 35.0%
ACATGGTCATGTTTCATTTC+AGG - chr4_1:45292089-45292108 Msa0549960:CDS 35.0%
!! CATGTTTCATTTCAGGTTCT+TGG - chr4_1:45292096-45292115 Msa0549960:CDS 35.0%
ACCCATATGAAATTATCAGC+TGG + chr4_1:45292159-45292178 None:intergenic 35.0%
GTTCCAAAATTGGAAGTTCA+GGG - chr4_1:45292177-45292196 Msa0549960:intron 35.0%
TGTTGAAATAAGTACTCTCC+TGG - chr4_1:45292280-45292299 Msa0549960:CDS 35.0%
GTTGAAATAAGTACTCTCCT+GGG - chr4_1:45292281-45292300 Msa0549960:CDS 35.0%
TGGAACAGAAAGCAAACTCT+TGG - chr4_1:45291414-45291433 Msa0549960:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG + chr4_1:45291520-45291539 None:intergenic 40.0%
! GGAAATTGAAGGGTCTCTTT+TGG + chr4_1:45291587-45291606 None:intergenic 40.0%
TGTCTCTTGGCCAAAACTTA+GGG + chr4_1:45291609-45291628 None:intergenic 40.0%
TTGTCTCTTGGCCAAAACTT+AGG + chr4_1:45291610-45291629 None:intergenic 40.0%
! AGTGAATCAGCTTTGTCTCT+TGG + chr4_1:45291622-45291641 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG + chr4_1:45291713-45291732 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG + chr4_1:45291732-45291751 None:intergenic 40.0%
!! TGTTGGTGATAATGGGGATT+TGG - chr4_1:45292023-45292042 Msa0549960:CDS 40.0%
TGACACACATTAGAACTTCC+TGG + chr4_1:45292129-45292148 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG - chr4_1:45292176-45292195 Msa0549960:intron 40.0%
! ACACCCTGAACTTCCAATTT+TGG + chr4_1:45292183-45292202 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG + chr4_1:45292301-45292320 None:intergenic 40.0%
TGGAACAGAAAGCAAACTCT+TGG - chr4_1:45291414-45291433 Msa0549960:CDS 40.0%
GTGAAGAACACCATAACAGA+AGG + chr4_1:45291520-45291539 None:intergenic 40.0%
! GGAAATTGAAGGGTCTCTTT+TGG + chr4_1:45291587-45291606 None:intergenic 40.0%
TGTCTCTTGGCCAAAACTTA+GGG + chr4_1:45291609-45291628 None:intergenic 40.0%
TTGTCTCTTGGCCAAAACTT+AGG + chr4_1:45291610-45291629 None:intergenic 40.0%
! AGTGAATCAGCTTTGTCTCT+TGG + chr4_1:45291622-45291641 None:intergenic 40.0%
!! AAGGGTATCTACCATTGCTT+TGG + chr4_1:45291713-45291732 None:intergenic 40.0%
GTTTGCTCTCACATTCTGTA+AGG + chr4_1:45291732-45291751 None:intergenic 40.0%
!! TGTTGGTGATAATGGGGATT+TGG - chr4_1:45292023-45292042 Msa0549960:CDS 40.0%
TGACACACATTAGAACTTCC+TGG + chr4_1:45292129-45292148 None:intergenic 40.0%
GGTTCCAAAATTGGAAGTTC+AGG - chr4_1:45292176-45292195 Msa0549960:intron 40.0%
! ACACCCTGAACTTCCAATTT+TGG + chr4_1:45292183-45292202 None:intergenic 40.0%
TAGCATCATTACATGTACCC+AGG + chr4_1:45292301-45292320 None:intergenic 40.0%
AGCAGAGCAAGAGAATTAGC+TGG - chr4_1:45291394-45291413 Msa0549960:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG - chr4_1:45291507-45291526 Msa0549960:CDS 45.0%
GTCTCTTGGCCAAAACTTAG+GGG + chr4_1:45291608-45291627 None:intergenic 45.0%
!! TTTGGCTTGTGGAGAGTCTT+GGG + chr4_1:45291695-45291714 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG + chr4_1:45291706-45291725 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG - chr4_1:45291739-45291758 Msa0549960:CDS 45.0%
GAGGATTTCAGCTCCAAAGA+TGG - chr4_1:45291915-45291934 Msa0549960:CDS 45.0%
GATTTCAGCTCCAAAGATGG+TGG - chr4_1:45291918-45291937 Msa0549960:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG - chr4_1:45292026-45292045 Msa0549960:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG - chr4_1:45292072-45292091 Msa0549960:CDS 45.0%
AGCAGAGCAAGAGAATTAGC+TGG - chr4_1:45291394-45291413 Msa0549960:CDS 45.0%
TCACATGGACCCTTCTGTTA+TGG - chr4_1:45291507-45291526 Msa0549960:CDS 45.0%
GTCTCTTGGCCAAAACTTAG+GGG + chr4_1:45291608-45291627 None:intergenic 45.0%
!! TTTGGCTTGTGGAGAGTCTT+GGG + chr4_1:45291695-45291714 None:intergenic 45.0%
!! TCTACCATTGCTTTGGCTTG+TGG + chr4_1:45291706-45291725 None:intergenic 45.0%
TGTGAGAGCAAACCCATCAA+AGG - chr4_1:45291739-45291758 Msa0549960:CDS 45.0%
GAGGATTTCAGCTCCAAAGA+TGG - chr4_1:45291915-45291934 Msa0549960:CDS 45.0%
GATTTCAGCTCCAAAGATGG+TGG - chr4_1:45291918-45291937 Msa0549960:CDS 45.0%
!! TGGTGATAATGGGGATTTGG+TGG - chr4_1:45292026-45292045 Msa0549960:CDS 45.0%
GATACTTCTCATTGGGGACA+TGG - chr4_1:45292072-45292091 Msa0549960:CDS 45.0%
!! CTTTGGCTTGTGGAGAGTCT+TGG + chr4_1:45291696-45291715 None:intergenic 50.0%
CTCTCCACAAGCCAAAGCAA+TGG - chr4_1:45291699-45291718 Msa0549960:CDS 50.0%
GTGTGACATGCCACCATCTT+TGG + chr4_1:45291931-45291950 None:intergenic 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG - chr4_1:45292035-45292054 Msa0549960:CDS 50.0%
!! CTTTGGCTTGTGGAGAGTCT+TGG + chr4_1:45291696-45291715 None:intergenic 50.0%
CTCTCCACAAGCCAAAGCAA+TGG - chr4_1:45291699-45291718 Msa0549960:CDS 50.0%
GTGTGACATGCCACCATCTT+TGG + chr4_1:45291931-45291950 None:intergenic 50.0%
!! TGGGGATTTGGTGGAAGCTA+TGG - chr4_1:45292035-45292054 Msa0549960:CDS 50.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG - chr4_1:45292108-45292127 Msa0549960:CDS 55.0%
!! CAGGTTCTTGGTGTTGTGCC+AGG - chr4_1:45292108-45292127 Msa0549960:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 45291067 45292458 45291067 ID=Msa0549960;Name=Msa0549960
chr4_1 mRNA 45291067 45292458 45291067 ID=Msa0549960-mRNA-1;Parent=Msa0549960;Name=Msa0549960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|1|1|2|243|301
chr4_1 exon 45291067 45292143 45291067 ID=Msa0549960-mRNA-1:exon:11934;Parent=Msa0549960-mRNA-1
chr4_1 exon 45292278 45292458 45292278 ID=Msa0549960-mRNA-1:exon:11933;Parent=Msa0549960-mRNA-1
chr4_1 five_prime_UTR 45292350 45292458 45292350 ID=Msa0549960-mRNA-1:five_prime_utr;Parent=Msa0549960-mRNA-1
chr4_1 CDS 45292278 45292349 45292278 ID=Msa0549960-mRNA-1:cds;Parent=Msa0549960-mRNA-1
chr4_1 CDS 45291310 45292143 45291310 ID=Msa0549960-mRNA-1:cds;Parent=Msa0549960-mRNA-1
chr4_1 three_prime_UTR 45291067 45291309 45291067 ID=Msa0549960-mRNA-1:three_prime_utr;Parent=Msa0549960-mRNA-1
Gene Sequence

>Msa0549960

ATGCTAAGCAGAAACATGAGTCCAAAGTTTATATCTGAGATCCTCTTTCTTCATCTACTAGTACTAATCACGATTTTTTATGGAAGCAGAGCAAGAGAATTAGCTGGAACAGAAAGCAAACTCTTGGATATTGCACTGAACAAAACTGCTACTAATGAACATCAAACAGAACACAAACATCATGCACATAATCACAATCACATGGACCCTTCTGTTATGGTGTTCTTCACCTTGAAAGACTTAAAAGTTGGGAAAAGAATGCAAATTAATTTTCCCAAAAGAGACCCTTCAATTTCCCCTAAGTTTTGGCCAAGAGACAAAGCTGATTCACTTCCTTTTTCTTTGAACAAACTTCCAACTCTTCTCAAAATCTTCTCTTTATCCCAAGACTCTCCACAAGCCAAAGCAATGGTAGATACCCTTACAGAATGTGAGAGCAAACCCATCAAAGGAGAAGTGAAATTCTGCGCGACTTCTTTAGAATCTATGCTTGATTTCACTCAAACCATTCTTGGTTTTTCAAATGATCTTCAAGTTTATGCAACTTCACATTTAACCAAATCAAGTGTCACTTTTCAGAACTATACTATATTAGACAAGATTATGAGGATTTCAGCTCCAAAGATGGTGGCATGTCACACTATGCCTTACCCTTATGCTGTTTTCTATTGCCATAGTCAAGAAAGTGAGAATAGGATATATAGAGTTTCACTTGTTGGTGATAATGGGGATTTGGTGGAAGCTATGGTTGTTTGTCATATGGATACTTCTCATTGGGGACATGGTCATGTTTCATTTCAGGTTCTTGGTGTTGTGCCAGGAAGTTCTAATGTGTGTCACTTTTTTCCAGCTGATAATTTCATATGGGTTCCAAAATTGGAAGTTCAGGGTGTTTCAGACATGTGA

Protein sequence

>Msa0549960

MLSRNMSPKFISEILFLHLLVLITIFYGSRARELAGTESKLLDIALNKTATNEHQTEHKHHAHNHNHMDPSVMVFFTLKDLKVGKRMQINFPKRDPSISPKFWPRDKADSLPFSLNKLPTLLKIFSLSQDSPQAKAMVDTLTECESKPIKGEVKFCATSLESMLDFTQTILGFSNDLQVYATSHLTKSSVTFQNYTILDKIMRISAPKMVACHTMPYPYAVFYCHSQESENRIYRVSLVGDNGDLVEAMVVCHMDTSHWGHGHVSFQVLGVVPGSSNVCHFFPADNFIWVPKLEVQGVSDM*