AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042390 MtrunA17_Chr1g0191051 66.337 202 34 3 309 490 136 323 1.03e-73 235
Msa0042390 MtrunA17_Chr1g0191051 73.913 138 16 1 1 118 158 295 7.35e-50 173
Msa0042390 MtrunA17_Chr1g0191051 71.739 138 16 1 173 287 157 294 2.11e-49 172
Msa0042390 MtrunA17_Chr1g0191051 57.798 109 39 2 118 224 14 117 1.09e-28 115
Msa0042390 MtrunA17_Chr1g0191051 46.721 122 37 3 297 395 1 117 1.03e-18 87.0
Msa0042390 MtrunA17_Chr1g0191061 66.019 206 38 4 317 490 178 383 1.85e-63 211
Msa0042390 MtrunA17_Chr1g0191061 79.856 139 8 1 1 119 218 356 2.87e-51 179
Msa0042390 MtrunA17_Chr1g0191061 69.388 147 20 2 166 287 208 354 7.67e-43 156
Msa0042390 MtrunA17_Chr1g0191061 72.000 75 8 1 112 173 22 96 6.69e-25 106
Msa0042390 MtrunA17_Chr1g0191071 67.317 205 22 6 309 490 82 264 4.39e-62 203
Msa0042390 MtrunA17_Chr1g0191071 70.323 155 19 3 166 293 94 248 9.41e-45 157
Msa0042390 MtrunA17_Chr1g0191071 67.460 126 21 1 2 107 105 230 1.06e-35 133
Msa0042390 MtrunA17_Chr4g0045721 50.754 199 64 3 309 487 176 360 2.11e-56 191
Msa0042390 MtrunA17_Chr4g0045721 55.072 138 39 1 173 287 197 334 6.23e-40 147
Msa0042390 MtrunA17_Chr4g0045721 53.623 138 44 1 1 118 198 335 3.93e-39 145
Msa0042390 MtrunA17_Chr4g0045721 47.222 108 52 2 118 224 54 157 2.64e-17 83.6
Msa0042390 MtrunA17_Chr1g0205381 67.665 167 34 1 344 490 158 324 2.28e-52 180
Msa0042390 MtrunA17_Chr1g0205381 57.485 167 46 3 1 144 159 323 6.84e-35 133
Msa0042390 MtrunA17_Chr1g0205381 62.319 138 29 1 173 287 158 295 6.14e-31 122
Msa0042390 MtrunA17_Chr1g0205381 46.789 109 51 2 118 224 15 118 9.13e-18 84.3
Msa0042390 MtrunA17_Chr1g0191041 58.416 202 50 3 309 490 137 324 2.57e-51 177
Msa0042390 MtrunA17_Chr1g0191041 66.906 139 26 1 1 119 159 297 2.14e-35 134
Msa0042390 MtrunA17_Chr1g0191041 61.594 138 30 1 173 287 158 295 6.77e-30 119
Msa0042390 MtrunA17_Chr1g0191041 43.119 109 55 2 118 224 15 118 7.00e-17 81.6
Msa0042390 MtrunA17_Chr5g0394491 58.911 202 49 3 309 490 137 324 1.24e-50 175
Msa0042390 MtrunA17_Chr5g0394491 62.590 139 32 1 1 119 159 297 3.35e-33 128
Msa0042390 MtrunA17_Chr5g0394491 61.594 138 30 1 173 287 158 295 1.47e-28 115
Msa0042390 MtrunA17_Chr5g0394491 44.954 109 53 2 118 224 15 118 2.03e-18 86.3
Msa0042390 MtrunA17_Chr4g0045771 47.573 206 65 5 302 487 169 351 3.16e-50 175
Msa0042390 MtrunA17_Chr4g0045771 47.368 152 62 2 151 287 177 325 2.35e-34 132
Msa0042390 MtrunA17_Chr4g0045771 50.725 138 40 2 1 118 197 326 4.19e-33 129
Msa0042390 MtrunA17_Chr4g0045771 60.938 64 25 0 111 174 46 109 5.08e-17 82.4
Msa0042390 MtrunA17_Chr7g0248021 48.128 187 71 3 327 487 188 374 3.42e-44 159
Msa0042390 MtrunA17_Chr7g0248021 47.826 138 49 1 173 287 211 348 1.80e-29 119
Msa0042390 MtrunA17_Chr7g0248021 48.175 137 51 1 1 117 212 348 3.96e-29 118
Msa0042390 MtrunA17_Chr7g0248021 63.158 57 21 0 118 174 68 124 5.62e-15 76.6
Msa0042390 MtrunA17_Chr4g0045781 60.976 164 44 1 344 487 216 379 2.49e-43 157
Msa0042390 MtrunA17_Chr4g0045781 57.353 136 38 1 1 116 217 352 8.70e-30 120
Msa0042390 MtrunA17_Chr4g0045781 57.664 137 35 1 173 286 216 352 5.21e-28 115
Msa0042390 MtrunA17_Chr4g0045781 45.872 109 52 2 118 224 73 176 1.86e-17 84.0
Msa0042390 MtrunA17_Chr7g0254401 51.829 164 49 2 344 487 215 368 6.31e-33 128
Msa0042390 MtrunA17_Chr7g0254401 47.826 138 42 2 1 118 216 343 2.48e-19 89.7
Msa0042390 MtrunA17_Chr7g0254401 47.973 148 39 3 162 286 209 341 7.22e-19 88.2
Msa0042390 MtrunA17_Chr7g0254401 43.590 117 56 3 110 224 67 175 1.01e-17 84.7
Msa0042390 MtrunA17_Chr5g0446431 28.179 291 161 7 115 403 48 292 3.92e-19 89.7
Msa0042390 MtrunA17_Chr5g0446431 56.897 58 25 0 2 59 235 292 4.56e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042390 AT3G04940.1 60.674 178 47 2 330 487 147 321 5.51e-54 184
Msa0042390 AT3G04940.1 54.601 163 45 2 148 287 139 295 5.16e-38 142
Msa0042390 AT3G04940.1 62.774 137 31 1 2 118 160 296 4.37e-37 139
Msa0042390 AT3G04940.1 70.175 57 17 0 118 174 15 71 1.54e-19 90.1
Msa0042390 AT3G04940.2 60.674 178 47 2 330 487 147 321 5.51e-54 184
Msa0042390 AT3G04940.2 54.601 163 45 2 148 287 139 295 5.16e-38 142
Msa0042390 AT3G04940.2 62.774 137 31 1 2 118 160 296 4.37e-37 139
Msa0042390 AT3G04940.2 70.175 57 17 0 118 174 15 71 1.54e-19 90.1
Msa0042390 AT4G14880.5 61.202 183 44 3 330 490 144 321 1.12e-52 181
Msa0042390 AT4G14880.5 63.504 137 30 1 1 117 156 292 2.23e-36 137
Msa0042390 AT4G14880.5 59.211 152 36 3 159 287 144 292 6.78e-34 130
Msa0042390 AT4G14880.5 46.789 109 51 2 118 224 12 115 1.13e-19 90.5
Msa0042390 AT4G14880.3 61.202 183 44 3 330 490 144 321 1.12e-52 181
Msa0042390 AT4G14880.3 63.504 137 30 1 1 117 156 292 2.23e-36 137
Msa0042390 AT4G14880.3 59.211 152 36 3 159 287 144 292 6.78e-34 130
Msa0042390 AT4G14880.3 46.789 109 51 2 118 224 12 115 1.13e-19 90.5
Msa0042390 AT4G14880.4 61.202 183 44 3 330 490 144 321 1.12e-52 181
Msa0042390 AT4G14880.4 63.504 137 30 1 1 117 156 292 2.23e-36 137
Msa0042390 AT4G14880.4 59.211 152 36 3 159 287 144 292 6.78e-34 130
Msa0042390 AT4G14880.4 46.789 109 51 2 118 224 12 115 1.13e-19 90.5
Msa0042390 AT4G14880.2 61.202 183 44 3 330 490 144 321 1.12e-52 181
Msa0042390 AT4G14880.2 63.504 137 30 1 1 117 156 292 2.23e-36 137
Msa0042390 AT4G14880.2 59.211 152 36 3 159 287 144 292 6.78e-34 130
Msa0042390 AT4G14880.2 46.789 109 51 2 118 224 12 115 1.13e-19 90.5
Msa0042390 AT4G14880.1 61.202 183 44 3 330 490 144 321 1.12e-52 181
Msa0042390 AT4G14880.1 63.504 137 30 1 1 117 156 292 2.23e-36 137
Msa0042390 AT4G14880.1 59.211 152 36 3 159 287 144 292 6.78e-34 130
Msa0042390 AT4G14880.1 46.789 109 51 2 118 224 12 115 1.13e-19 90.5
Msa0042390 AT3G22460.1 54.098 183 37 4 330 490 92 249 1.04e-48 168
Msa0042390 AT3G22460.1 54.015 137 23 2 1 117 104 220 6.47e-33 125
Msa0042390 AT3G22460.1 50.000 152 30 4 159 287 92 220 5.04e-30 118
Msa0042390 AT2G43750.1 65.244 164 37 1 344 487 225 388 2.03e-48 171
Msa0042390 AT2G43750.1 62.774 137 28 1 173 286 225 361 8.55e-32 126
Msa0042390 AT2G43750.1 59.420 138 36 1 1 118 226 363 7.03e-31 124
Msa0042390 AT2G43750.1 43.590 117 56 3 110 224 77 185 1.17e-19 91.3
Msa0042390 AT2G43750.2 65.244 164 37 1 344 487 225 388 2.03e-48 171
Msa0042390 AT2G43750.2 62.774 137 28 1 173 286 225 361 8.55e-32 126
Msa0042390 AT2G43750.2 59.420 138 36 1 1 118 226 363 7.03e-31 124
Msa0042390 AT2G43750.2 43.590 117 56 3 110 224 77 185 1.17e-19 91.3
Msa0042390 AT3G59760.3 55.276 199 55 3 309 487 242 426 1.51e-47 170
Msa0042390 AT3G59760.3 60.145 138 35 1 1 118 264 401 5.91e-31 124
Msa0042390 AT3G59760.3 59.124 137 33 1 173 286 263 399 6.16e-29 119
Msa0042390 AT3G59760.3 45.299 117 54 3 110 224 115 223 2.89e-20 93.6
Msa0042390 AT3G59760.1 55.276 199 55 3 309 487 242 426 1.59e-47 170
Msa0042390 AT3G59760.1 60.145 138 35 1 1 118 264 401 6.40e-31 124
Msa0042390 AT3G59760.1 59.124 137 33 1 173 286 263 399 6.71e-29 119
Msa0042390 AT3G59760.1 45.299 117 54 3 110 224 115 223 2.80e-20 93.6
Msa0042390 AT5G28020.5 62.424 165 42 1 346 490 73 237 6.78e-47 163
Msa0042390 AT5G28020.5 61.151 139 34 1 1 119 72 210 2.18e-32 124
Msa0042390 AT5G28020.5 60.294 136 31 1 175 287 73 208 6.48e-31 120
Msa0042390 AT5G28020.2 62.424 165 42 1 346 490 159 323 2.58e-46 164
Msa0042390 AT5G28020.2 61.151 139 34 1 1 119 158 296 8.33e-32 124
Msa0042390 AT5G28020.2 60.294 136 31 1 175 287 159 294 2.79e-30 120
Msa0042390 AT5G28020.2 71.930 57 16 0 118 174 14 70 1.52e-20 92.8
Msa0042390 AT5G28020.4 62.424 165 42 1 346 490 159 323 2.58e-46 164
Msa0042390 AT5G28020.4 61.151 139 34 1 1 119 158 296 8.33e-32 124
Msa0042390 AT5G28020.4 60.294 136 31 1 175 287 159 294 2.79e-30 120
Msa0042390 AT5G28020.4 71.930 57 16 0 118 174 14 70 1.52e-20 92.8
Msa0042390 AT5G28020.1 62.424 165 42 1 346 490 159 323 2.58e-46 164
Msa0042390 AT5G28020.1 61.151 139 34 1 1 119 158 296 8.33e-32 124
Msa0042390 AT5G28020.1 60.294 136 31 1 175 287 159 294 2.79e-30 120
Msa0042390 AT5G28020.1 71.930 57 16 0 118 174 14 70 1.52e-20 92.8
Msa0042390 AT5G28020.3 62.424 165 42 1 346 490 159 323 2.58e-46 164
Msa0042390 AT5G28020.3 61.151 139 34 1 1 119 158 296 8.33e-32 124
Msa0042390 AT5G28020.3 60.294 136 31 1 175 287 159 294 2.79e-30 120
Msa0042390 AT5G28020.3 71.930 57 16 0 118 174 14 70 1.52e-20 92.8
Msa0042390 AT5G28020.6 62.424 165 42 1 346 490 159 323 2.58e-46 164
Msa0042390 AT5G28020.6 61.151 139 34 1 1 119 158 296 8.33e-32 124
Msa0042390 AT5G28020.6 60.294 136 31 1 175 287 159 294 2.79e-30 120
Msa0042390 AT5G28020.6 71.930 57 16 0 118 174 14 70 1.52e-20 92.8
Msa0042390 AT5G28030.1 61.212 165 44 1 346 490 159 323 8.51e-46 162
Msa0042390 AT5G28030.1 62.319 138 32 1 1 118 158 295 8.40e-31 122
Msa0042390 AT5G28030.1 57.931 145 36 2 168 287 150 294 2.56e-30 120
Msa0042390 AT5G28030.1 68.750 64 19 1 118 180 14 77 2.34e-20 92.4
Msa0042390 AT5G28030.4 61.212 165 44 1 346 490 159 323 8.51e-46 162
Msa0042390 AT5G28030.4 62.319 138 32 1 1 118 158 295 8.40e-31 122
Msa0042390 AT5G28030.4 57.931 145 36 2 168 287 150 294 2.56e-30 120
Msa0042390 AT5G28030.4 68.750 64 19 1 118 180 14 77 2.34e-20 92.4
Msa0042390 AT5G28030.5 61.212 165 44 1 346 490 159 323 8.51e-46 162
Msa0042390 AT5G28030.5 62.319 138 32 1 1 118 158 295 8.40e-31 122
Msa0042390 AT5G28030.5 57.931 145 36 2 168 287 150 294 2.56e-30 120
Msa0042390 AT5G28030.5 68.750 64 19 1 118 180 14 77 2.34e-20 92.4
Msa0042390 AT5G28030.2 61.212 165 44 1 346 490 159 323 8.51e-46 162
Msa0042390 AT5G28030.2 62.319 138 32 1 1 118 158 295 8.40e-31 122
Msa0042390 AT5G28030.2 57.931 145 36 2 168 287 150 294 2.56e-30 120
Msa0042390 AT5G28030.2 68.750 64 19 1 118 180 14 77 2.34e-20 92.4
Msa0042390 AT3G61440.3 52.381 168 58 2 342 487 74 241 1.81e-44 157
Msa0042390 AT3G61440.3 48.276 145 50 2 168 287 71 215 2.84e-30 118
Msa0042390 AT3G61440.3 49.635 137 49 1 1 117 79 215 1.95e-29 116
Msa0042390 AT3G61440.2 52.381 168 58 2 342 487 99 266 3.86e-44 157
Msa0042390 AT3G61440.2 48.276 145 50 2 168 287 96 240 6.25e-30 118
Msa0042390 AT3G61440.2 49.635 137 49 1 1 117 104 240 4.42e-29 115
Msa0042390 AT3G61440.1 52.381 168 58 2 342 487 195 362 3.43e-43 157
Msa0042390 AT3G61440.1 48.276 145 50 2 168 287 192 336 2.44e-29 119
Msa0042390 AT3G61440.1 49.635 137 49 1 1 117 200 336 1.49e-28 116
Msa0042390 AT3G61440.1 58.621 58 24 0 117 174 55 112 4.96e-15 77.0
Msa0042390 AT3G03630.1 51.807 166 50 2 344 489 249 404 3.99e-33 130
Msa0042390 AT3G03630.1 50.365 137 35 2 173 286 249 375 4.49e-19 89.7
Msa0042390 AT3G03630.1 46.154 117 53 3 110 224 101 209 9.33e-18 85.5
Msa0042390 AT3G03630.1 49.275 138 40 2 1 118 250 377 2.12e-17 84.7
Msa0042390 AT3G59760.2 51.724 174 50 3 309 462 242 401 4.07e-31 125
Msa0042390 AT3G59760.2 59.712 139 36 1 1 119 264 402 4.58e-31 125
Msa0042390 AT3G59760.2 57.639 144 38 1 173 293 263 406 2.97e-29 119
Msa0042390 AT3G59760.2 45.299 117 54 3 110 224 115 223 5.18e-20 92.8
Msa0042390 AT5G28030.3 70.000 90 27 0 346 435 159 248 3.50e-29 115
Msa0042390 AT5G28030.3 66.667 96 30 1 168 261 150 245 3.52e-28 113
Msa0042390 AT5G28030.3 70.330 91 27 0 1 91 158 248 1.56e-26 108
Msa0042390 AT5G28030.3 68.750 64 19 1 118 180 14 77 1.38e-20 91.7
Msa0042390 AT3G61440.4 50.877 114 52 2 342 453 195 306 2.52e-24 103
Msa0042390 AT3G61440.4 49.565 115 55 2 168 279 192 306 5.44e-24 103
Msa0042390 AT3G61440.4 50.943 106 50 1 1 106 200 303 1.05e-21 96.3
Msa0042390 AT3G61440.4 58.621 58 24 0 117 174 55 112 6.40e-15 76.3
Msa0042390 AT1G55880.2 28.082 292 161 8 115 403 44 289 2.57e-21 95.5
Msa0042390 AT1G55880.2 54.902 51 23 0 2 52 232 282 1.74e-12 68.9
Msa0042390 AT1G55880.1 28.082 292 161 8 115 403 44 289 7.21e-21 95.1
Msa0042390 AT1G55880.1 54.902 51 23 0 2 52 232 282 2.42e-12 69.3
Msa0042390 AT3G22460.2 59.649 57 23 0 118 174 15 71 3.91e-16 77.0

Find 137 sgRNAs with CRISPR-Local

Find 1006 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTGTCTCTCCAAATTTC+AGG 0.120422 1_1:+73236639 None:intergenic
CAATTCATTGTGAAGTTAAT+AGG 0.176383 1_1:-73230557 Msa0042390:intron
AGACCACTGGCCCTGAAATT+TGG 0.229438 1_1:-73236650 Msa0042390:CDS
AAAGTATTGCCTTTATTAAT+AGG 0.237296 1_1:+73227824 None:intergenic
AATCAGTAATATACCTTTGC+AGG 0.289736 1_1:+73230271 None:intergenic
TTGGTTGCAGGGATAGGAAC+TGG 0.301174 1_1:-73229538 Msa0042390:CDS
TTGGTTGCAGGGATAGGAAC+TGG 0.301174 1_1:-73236600 Msa0042390:CDS
AGACCACTGGCCCTGAGATT+TGG 0.302016 1_1:-73229588 Msa0042390:CDS
AGACCACTGGCCCTGAGATT+TGG 0.302016 1_1:-73247188 Msa0042390:CDS
TCTCCTAGATGAAGTTATTC+AGG 0.311315 1_1:-73229077 Msa0042390:intron
TCTTCTAGATGAAGTTATTC+AGG 0.311475 1_1:-73246597 Msa0042390:intron
AGAATTGATGCTTTGGTTGC+AGG 0.319930 1_1:-73229550 Msa0042390:CDS
AGAATTGATGCTTTGGTTGC+AGG 0.319930 1_1:-73236612 Msa0042390:CDS
AAAATTGATGCTTTGGTTGC+AGG 0.319930 1_1:-73247150 Msa0042390:CDS
ATTGAAGATGCCGAAAATAA+TGG 0.348920 1_1:-73237674 Msa0042390:CDS
TGGTATCATTCCTCCTGTTC+TGG 0.360071 1_1:-73246627 Msa0042390:CDS
TAATCAGTAATTACCTTTCC+AGG 0.365883 1_1:+73237641 None:intergenic
TGGAGGGAAAATTGATGCTT+TGG 0.373019 1_1:-73247157 Msa0042390:CDS
CCAGTGTCTCTCCAAATCTC+AGG 0.381632 1_1:+73229577 None:intergenic
AATTCATTGTGAAGTTAATA+GGG 0.388493 1_1:-73230556 Msa0042390:intron
TTATCTATACCTATTAATAA+AGG 0.394855 1_1:-73227833 Msa0042390:three_prime_UTR
AGGTGTTGGGAAGTTTCTTA+AGG 0.398952 1_1:-73247103 Msa0042390:CDS
CCAGAGTCTCTCCAAATCTC+AGG 0.400543 1_1:+73247177 None:intergenic
ACCAACTGAAAGTCCAGTTC+TGG 0.403977 1_1:-73246966 Msa0042390:CDS
ATTGAAGATGCCGAAAATAA+AGG 0.410624 1_1:-73230304 Msa0042390:CDS
GACTTTCCTCCATCCAGAAC+TGG 0.417577 1_1:+73246953 None:intergenic
TTGCAGATGGGAATTTCATC+AGG 0.417954 1_1:-73228290 Msa0042390:intron
TTGCAGATGGGAATTTCATC+AGG 0.417954 1_1:-73235279 Msa0042390:intron
TTGCAGATGGGAATTTCATC+AGG 0.417954 1_1:-73245882 Msa0042390:intron
TTCTTCAGCTTCACGCCTGA+TGG 0.420313 1_1:+73227995 None:intergenic
TGGAGGGAGAATTGATGCTT+TGG 0.420775 1_1:-73229557 Msa0042390:CDS
TGGAGGGAGAATTGATGCTT+TGG 0.420775 1_1:-73236619 Msa0042390:CDS
GGAACTGGAGGAACAGTAAC+AGG 0.423268 1_1:-73247123 Msa0042390:CDS
TTGGTTGCAGGGATAGGAAC+TGG 0.425930 1_1:-73247138 Msa0042390:CDS
CAGTACCGATCCCTTGGATT+AGG 0.432171 1_1:+73236193 None:intergenic
CTTGCTGCAGTGTCAAAGAT+AGG 0.444641 1_1:-73237822 Msa0042390:intron
GAATTGATGCTTTGGTTGCA+GGG 0.460383 1_1:-73229549 Msa0042390:CDS
GAATTGATGCTTTGGTTGCA+GGG 0.460383 1_1:-73236611 Msa0042390:CDS
TGATACCAGCACCGATCCCT+TGG 0.461638 1_1:+73246642 None:intergenic
AGAAGATCAACTTCCAGAAC+AGG 0.462745 1_1:+73246614 None:intergenic
CGACACCAGTACCGATCCCT+TGG 0.468770 1_1:+73236187 None:intergenic
AAATTGATGCTTTGGTTGCA+GGG 0.474338 1_1:-73247149 Msa0042390:CDS
GCAGCAGCAGCAATAAAACT+AGG 0.476121 1_1:-73235249 Msa0042390:CDS
GCAGCTGCTGCAATTAAACT+AGG 0.477493 1_1:-73245852 Msa0042390:CDS
TTCAAAATTGCACTTTCAGT+TGG 0.477799 1_1:+73229328 None:intergenic
TTCAAAATTGCACTTTCAGT+TGG 0.477799 1_1:+73236390 None:intergenic
GGAGAGAAACTTAGATATCA+AGG 0.483692 1_1:-73229482 Msa0042390:intron
GGAGAGAAACTTAGATATCA+AGG 0.483692 1_1:-73236544 Msa0042390:intron
CGACACCATTACCGATACCT+TGG 0.483706 1_1:+73229122 None:intergenic
TGGTTGCAGGGATAGGAACT+GGG 0.484341 1_1:-73229537 Msa0042390:CDS
TGGTTGCAGGGATAGGAACT+GGG 0.484341 1_1:-73236599 Msa0042390:CDS
AATAATGGCTTCATTACTCC+TGG 0.484664 1_1:-73237659 Msa0042390:CDS
GCAACACTTTGCAATTAAGA+AGG 0.485120 1_1:-73230691 Msa0042390:CDS
CATCTAGGAGATCAAGATCC+AGG 0.490366 1_1:+73229089 None:intergenic
CATCTAGGAGATCAAGATCC+AGG 0.490366 1_1:+73236154 None:intergenic
CTACCTGAATAACTTCATCT+AGG 0.491918 1_1:+73229074 None:intergenic
CAGTGTCTCTCCAAATTTCA+GGG 0.492933 1_1:+73236640 None:intergenic
CTACCTGAATAACTTCATCT+AGG 0.495279 1_1:+73236139 None:intergenic
CGAATCCAAGGGATCGGTGC+TGG 0.495485 1_1:-73246647 Msa0042390:CDS
CTAATCCAAGGGATCGGTAC+TGG 0.496016 1_1:-73236192 Msa0042390:CDS
GTTCTGGATGGAGGAAAGTC+AGG 0.498982 1_1:-73246950 Msa0042390:intron
CTAATCCAAGGTATCGGTAA+TGG 0.499930 1_1:-73229127 Msa0042390:CDS
GATGCTTTGGTTGCAGGGAT+AGG 0.501960 1_1:-73229544 Msa0042390:CDS
GATGCTTTGGTTGCAGGGAT+AGG 0.501960 1_1:-73236606 Msa0042390:CDS
GATGCTTTGGTTGCAGGGAT+AGG 0.501960 1_1:-73247144 Msa0042390:CDS
CCTGAGATTTGGAGAGACTC+TGG 0.503327 1_1:-73247177 Msa0042390:CDS
GCAGCAGCTGCAATAAAACT+AGG 0.508019 1_1:-73228260 Msa0042390:CDS
AAGTAACGCTCTCCAAAACT+AGG 0.515786 1_1:+73228038 None:intergenic
TGGTTAATCAATAGAAGAGC+AGG 0.516952 1_1:-73231023 Msa0042390:intron
TCCAGAACTGGACTTTCAGT+TGG 0.517040 1_1:+73246965 None:intergenic
CCTTTCTTCATCAGATAACA+TGG 0.518210 1_1:-73230715 Msa0042390:CDS
GAGGAACAGTAACAGGTGTT+GGG 0.527424 1_1:-73247116 Msa0042390:CDS
TAGACTCATTATGAGACCAC+TGG 0.531764 1_1:-73229601 Msa0042390:CDS
TAGACTCATTATGAGACCAC+TGG 0.531764 1_1:-73236663 Msa0042390:CDS
TAGATTCATTATGAGACCAC+TGG 0.531764 1_1:-73247201 Msa0042390:CDS
GGAGGAACAGTAACAGGTGT+TGG 0.532217 1_1:-73247117 Msa0042390:CDS
AAAGGCAATCATCGAATCCA+AGG 0.533837 1_1:-73246659 Msa0042390:intron
AGGAGATCAAGATCCAGGAC+AGG 0.551186 1_1:+73229094 None:intergenic
AGGAGATCAAGATCCAGGAC+AGG 0.551186 1_1:+73236159 None:intergenic
TATCTAAACAACATTACAGA+AGG 0.556044 1_1:-73237886 Msa0042390:CDS
TCTCCAAATCTCAGGGCCAG+TGG 0.561794 1_1:+73229585 None:intergenic
TATCTTAACAACATTACAGA+AGG 0.565102 1_1:-73230518 Msa0042390:CDS
CCATGTTATCTGATGAAGAA+AGG 0.572162 1_1:+73230715 None:intergenic
GGGAAGAGACCAGAAAATGT+AGG 0.573068 1_1:-73245831 Msa0042390:CDS
GGGAAGAGACAAGAAAATGC+AGG 0.574537 1_1:-73228239 Msa0042390:CDS
GGGAAGAGACAAGAAAATGC+AGG 0.574537 1_1:-73235228 Msa0042390:CDS
AAAGGCAAACACCTAATCCA+AGG 0.576831 1_1:-73236204 Msa0042390:intron
TCTCCAAATTTCAGGGCCAG+TGG 0.578326 1_1:+73236647 None:intergenic
CAGCTGCTGCAATTAAACTA+GGG 0.579559 1_1:-73245851 Msa0042390:CDS
CAGCAGCAGCAATAAAACTA+GGG 0.582566 1_1:-73235248 Msa0042390:CDS
CAGCAGCTGCAATAAAACTA+GGG 0.584186 1_1:-73228259 Msa0042390:CDS
TATCTAAGTTTCTCTCCTTG+AGG 0.585770 1_1:+73229488 None:intergenic
TATCTAAGTTTCTCTCCTTG+AGG 0.585770 1_1:+73236550 None:intergenic
TGGCTTCATTACTCCTGGAA+AGG 0.588930 1_1:-73237654 Msa0042390:intron
CAGTGTCTCTCCAAATCTCA+GGG 0.596061 1_1:+73229578 None:intergenic
CCTGAGATTTGGAGAGACAC+TGG 0.596193 1_1:-73229577 Msa0042390:CDS
TCTCCAAATCTCAGGGCCAG+TGG 0.596982 1_1:+73247185 None:intergenic
GTTAATAGGGAACACACCAT+TGG 0.598353 1_1:-73230543 Msa0042390:CDS
GTTAACAGGGAACACACCAT+TGG 0.598353 1_1:-73237911 Msa0042390:CDS
AAAGGCGAACATCTAATCCA+AGG 0.601059 1_1:-73229139 Msa0042390:intron
GAACATCTAATCCAAGGTAT+CGG 0.603211 1_1:-73229133 Msa0042390:CDS
CCTGAAATTTGGAGAGACAC+TGG 0.603528 1_1:-73236639 Msa0042390:CDS
AGGTCTCATTACTCCTGCAA+AGG 0.603893 1_1:-73230284 Msa0042390:intron
GAGATTTGGAGAGACTCTGG+AGG 0.605051 1_1:-73247174 Msa0042390:CDS
AATCATCGAATCCAAGGGAT+CGG 0.608426 1_1:-73246653 Msa0042390:CDS
CAGAGTCTCTCCAAATCTCA+GGG 0.609348 1_1:+73247178 None:intergenic
ACTGAAAGTCCAGTTCTGGA+TGG 0.616441 1_1:-73246962 Msa0042390:CDS
GGGGAACAATAACAGGTGCT+GGG 0.617812 1_1:-73229516 Msa0042390:CDS
GGGGAACAATAACAGGTGCT+GGG 0.617812 1_1:-73236578 Msa0042390:CDS
AGTCATTCTCATTCAAGCTG+TGG 0.622200 1_1:-73227933 Msa0042390:three_prime_UTR
GGAGATCAAGATCCAGGACA+GGG 0.624998 1_1:+73229095 None:intergenic
GGAGATCAAGATCCAGGACA+GGG 0.624998 1_1:+73236160 None:intergenic
AGATCAACTTCCAGAACAGG+AGG 0.628629 1_1:+73246617 None:intergenic
AAGGCAAACACCTAATCCAA+GGG 0.643306 1_1:-73236203 Msa0042390:CDS
AAACACCTAATCCAAGGGAT+CGG 0.651827 1_1:-73236198 Msa0042390:CDS
AAGGCAATCATCGAATCCAA+GGG 0.655977 1_1:-73246658 Msa0042390:CDS
GAAAGTCCAGTTCTGGATGG+AGG 0.656019 1_1:-73246959 Msa0042390:CDS
AGATTTGGAGAGACACTGGA+GGG 0.656101 1_1:-73229573 Msa0042390:CDS
GAAATTTGGAGAGACACTGG+AGG 0.657808 1_1:-73236636 Msa0042390:CDS
AGATCAAGATCCAGGACAGG+GGG 0.659611 1_1:+73229097 None:intergenic
AGATCAAGATCCAGGACAGG+GGG 0.659611 1_1:+73236162 None:intergenic
GAGATTTGGAGAGACACTGG+AGG 0.660104 1_1:-73229574 Msa0042390:CDS
AGGTGCTGGGAAGTTCCTCA+AGG 0.662577 1_1:-73229503 Msa0042390:CDS
AGGTGCTGGGAAGTTCCTCA+AGG 0.662577 1_1:-73236565 Msa0042390:CDS
ATCTAAACAACATTACAGAA+GGG 0.663527 1_1:-73237885 Msa0042390:CDS
AGATTTGGAGAGACTCTGGA+GGG 0.665402 1_1:-73247173 Msa0042390:CDS
ATCTTAACAACATTACAGAA+GGG 0.672585 1_1:-73230517 Msa0042390:intron
GGTTGCAGGGATAGGAACTG+GGG 0.673121 1_1:-73229536 Msa0042390:CDS
GGTTGCAGGGATAGGAACTG+GGG 0.673121 1_1:-73236598 Msa0042390:CDS
GAGATCAAGATCCAGGACAG+GGG 0.676210 1_1:+73229096 None:intergenic
GAGATCAAGATCCAGGACAG+GGG 0.676210 1_1:+73236161 None:intergenic
AAATTTGGAGAGACACTGGA+GGG 0.678031 1_1:-73236635 Msa0042390:CDS
ATGTTGTTTAGATATACCAA+TGG 0.681506 1_1:+73237895 None:intergenic
GTTGCAGGGATAGGAACTGG+AGG 0.696987 1_1:-73247135 Msa0042390:CDS
GTTGCAGGGATAGGAACTGG+GGG 0.729118 1_1:-73229535 Msa0042390:CDS
GTTGCAGGGATAGGAACTGG+GGG 0.729118 1_1:-73236597 Msa0042390:CDS
ATGTTGTTAAGATATACCAA+TGG 0.736447 1_1:+73230527 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATTAAAAAAAA+CGG + chr1_1:73229874-73229893 None:intergenic 0.0%
!!! TTTTATTAATATTAATATTA+CGG + chr1_1:73231971-73231990 None:intergenic 0.0%
!! ATTTAATATTTAAATTTAAT+AGG - chr1_1:73232359-73232378 Msa0042390:intron 0.0%
!!! TATTTTTATTTTTATTTTTA+AGG - chr1_1:73242254-73242273 Msa0042390:intron 0.0%
!! AAATATTAAAGAATGAAATT+CGG + chr1_1:73228277-73228296 None:intergenic 10.0%
!! AACTAAATAATTACATATAA+TGG - chr1_1:73229316-73229335 Msa0042390:CDS 10.0%
!!! AAAAAAAATCAAATTTTCAA+TGG - chr1_1:73232432-73232451 Msa0042390:intron 10.0%
!! AAAAAAAAAAACTATTAACA+TGG - chr1_1:73232643-73232662 Msa0042390:intron 10.0%
!!! TTTATTCATTTTTAATTCAA+TGG + chr1_1:73232737-73232756 None:intergenic 10.0%
!! TTAAAAATGAATAAATCTTA+TGG - chr1_1:73232742-73232761 Msa0042390:intron 10.0%
!!! TTTTTGCTTATATAAAAAAT+CGG + chr1_1:73233890-73233909 None:intergenic 10.0%
!! AATATAAAAACTTATATCAT+AGG + chr1_1:73237469-73237488 None:intergenic 10.0%
!!! ACTATTTTTAGAAAAAAATT+GGG + chr1_1:73239054-73239073 None:intergenic 10.0%
!!! TTAATATTATTTGAGTTTAA+TGG - chr1_1:73239576-73239595 Msa0042390:intron 10.0%
!!! TTTTTGCTTATATAAAAAAT+CGG + chr1_1:73233890-73233909 None:intergenic 10.0%
!! ATTTAGTAAAATAATACTAT+CGG - chr1_1:73242504-73242523 Msa0042390:intron 10.0%
!!! ATCAACTATTATTTTATTTT+AGG - chr1_1:73243098-73243117 Msa0042390:intron 10.0%
!!! TTCAGTTTTATAATTAATTT+AGG - chr1_1:73243209-73243228 Msa0042390:intron 10.0%
!!! TCAGTTTTATAATTAATTTA+GGG - chr1_1:73243210-73243229 Msa0042390:intron 10.0%
!!! AACATATTAGTAAATTTTGA+AGG + chr1_1:73228564-73228583 None:intergenic 15.0%
!! AAAAGACATTCATATATAAT+TGG + chr1_1:73229121-73229140 None:intergenic 15.0%
!! TAAAATCAATTATTGTTGAA+GGG - chr1_1:73230498-73230517 Msa0042390:intron 15.0%
!! CAAATATAACAAGAAAAAAT+GGG + chr1_1:73231615-73231634 None:intergenic 15.0%
!! ACAAATATAACAAGAAAAAA+TGG + chr1_1:73231616-73231635 None:intergenic 15.0%
!!! TTAAAATGAAATTGTTGTTA+GGG + chr1_1:73232208-73232227 None:intergenic 15.0%
!!! TTTAAAATGAAATTGTTGTT+AGG + chr1_1:73232209-73232228 None:intergenic 15.0%
!!! AGGAAAAGTATTAAATTAAT+AGG - chr1_1:73232379-73232398 Msa0042390:intron 15.0%
!! AGTGTTAAGATTATAATTTA+TGG - chr1_1:73232462-73232481 Msa0042390:intron 15.0%
!! GTGTTAAGATTATAATTTAT+GGG - chr1_1:73232463-73232482 Msa0042390:intron 15.0%
!! TTCCTTCAAAATATAATTTA+TGG - chr1_1:73232489-73232508 Msa0042390:intron 15.0%
!! TCCTTCAAAATATAATTTAT+GGG - chr1_1:73232490-73232509 Msa0042390:intron 15.0%
!!! ATTCGATATTATTTTTTTGA+AGG - chr1_1:73232548-73232567 Msa0042390:intron 15.0%
!! TGTATTATATATGTAAAAGT+AGG - chr1_1:73232879-73232898 Msa0042390:intron 15.0%
!! GAATGAATGTTTAAAAAATT+TGG - chr1_1:73233214-73233233 Msa0042390:intron 15.0%
!! AAAAAAATAAATATGCAACT+TGG - chr1_1:73233906-73233925 Msa0042390:intron 15.0%
!!! AAAATTTTTGGACATAAATA+TGG - chr1_1:73234257-73234276 Msa0042390:intron 15.0%
!! CTTAAAAAAAAAAATACAAG+TGG + chr1_1:73234327-73234346 None:intergenic 15.0%
!!! CACTTGTATTTTTTTTTTTA+AGG - chr1_1:73234325-73234344 Msa0042390:intron 15.0%
!!! TATTAAAAAGTCATATTTTG+TGG + chr1_1:73234412-73234431 None:intergenic 15.0%
!!! TATCCTGTATTTTTTTTTTA+AGG - chr1_1:73234465-73234484 Msa0042390:intron 15.0%
!! TTTCCTTAAAAAAAAAATAC+AGG + chr1_1:73234471-73234490 None:intergenic 15.0%
!! GTTTAGTAAAATAATACTAT+CGG - chr1_1:73234520-73234539 Msa0042390:intron 15.0%
!! GTGGATAATAATAATAATTA+AGG + chr1_1:73236744-73236763 None:intergenic 15.0%
!!! TAAAGTACAAAATGATATTT+TGG + chr1_1:73236774-73236793 None:intergenic 15.0%
!! ATCATTACAAATTCTTAATT+AGG + chr1_1:73237290-73237309 None:intergenic 15.0%
!! TTTCTCATTATCATTATATA+CGG + chr1_1:73237796-73237815 None:intergenic 15.0%
!!! AGTTTAATCTTTTTAAACAA+TGG - chr1_1:73237986-73238005 Msa0042390:intron 15.0%
!! TGAAAAATTCAATCAATAAA+TGG + chr1_1:73238783-73238802 None:intergenic 15.0%
!!! AATAATTTGTTAAAAGAAGA+TGG - chr1_1:73238916-73238935 Msa0042390:intron 15.0%
!!! CTATTTTTAGAAAAAAATTG+GGG + chr1_1:73239053-73239072 None:intergenic 15.0%
!!! GACTATTTTTAGAAAAAAAT+TGG + chr1_1:73239055-73239074 None:intergenic 15.0%
!! AATGATAAGATAAATATCTT+CGG + chr1_1:73239077-73239096 None:intergenic 15.0%
!! AAAAAAAAGTCATATTAACT+TGG - chr1_1:73241825-73241844 Msa0042390:intron 15.0%
!!! TTAGTTAGTTTTTTCTTTTT+TGG - chr1_1:73242018-73242037 Msa0042390:intron 15.0%
!!! TTGAATTATTTTTTTTCCAA+CGG + chr1_1:73242318-73242337 None:intergenic 15.0%
!!! TTATCCTGTATTTTTTTTTA+TGG - chr1_1:73242400-73242419 Msa0042390:intron 15.0%
!!! AAGATTTCTTCTTTTTTATT+TGG + chr1_1:73243008-73243027 None:intergenic 15.0%
!!! TATACTTTTTGAAAAGAAAT+TGG - chr1_1:73243338-73243357 Msa0042390:intron 15.0%
!! AAAAAAATTCAAAAACAATC+AGG + chr1_1:73243575-73243594 None:intergenic 15.0%
!!! TGATTGTTTTTGAATTTTTT+TGG - chr1_1:73243574-73243593 Msa0042390:intron 15.0%
!!! CTTTAAAAAGAAAAACTATT+AGG + chr1_1:73243746-73243765 None:intergenic 15.0%
!!! ATCTTATCTTTTTTTGTTTT+TGG + chr1_1:73243971-73243990 None:intergenic 15.0%
!! AAAAAGATAAGATATTCAAT+TGG - chr1_1:73243978-73243997 Msa0042390:intron 15.0%
!! ATTAGTAATTTCATTCATAT+AGG - chr1_1:73244024-73244043 Msa0042390:intron 15.0%
!! TTATATAACAAATAACTGAA+GGG + chr1_1:73246501-73246520 None:intergenic 15.0%
!! TTTATATAACAAATAACTGA+AGG + chr1_1:73246502-73246521 None:intergenic 15.0%
!! TGTTAATAATATTTGAGTAA+TGG - chr1_1:73246556-73246575 Msa0042390:intron 15.0%
!! TTATCTATACCTATTAATAA+AGG - chr1_1:73247188-73247207 Msa0042390:CDS 15.0%
!!! TTATTGTTATTCACTTGAAT+TGG - chr1_1:73228219-73228238 Msa0042390:intron 20.0%
!!! TTGAAATACTTTTGTATGTT+AGG + chr1_1:73229022-73229041 None:intergenic 20.0%
!! TTAAACTCTTAATATTTGTC+AGG - chr1_1:73229095-73229114 Msa0042390:CDS 20.0%
!! TAAGTTTATGTCACAAATAA+TGG - chr1_1:73229227-73229246 Msa0042390:intron 20.0%
!!! TAATTTATGTCCTTATTTCT+AGG - chr1_1:73229354-73229373 Msa0042390:intron 20.0%
!! TTAGTTTATTCCTAGAAATA+AGG + chr1_1:73229367-73229386 None:intergenic 20.0%
!!! TTTGTTGAATAATAACGTTT+TGG - chr1_1:73229720-73229739 Msa0042390:intron 20.0%
!!! ATATTCTTTTTTCACTAATG+TGG + chr1_1:73229851-73229870 None:intergenic 20.0%
!!! TTTATATATTTTGCGTTGTT+CGG - chr1_1:73229892-73229911 Msa0042390:intron 20.0%
!! CTAAAATCAATTATTGTTGA+AGG - chr1_1:73230497-73230516 Msa0042390:intron 20.0%
!! AAAATCAATTATTGTTGAAG+GGG - chr1_1:73230499-73230518 Msa0042390:intron 20.0%
!!! AAAATAGAGAATGCTATTTT+TGG - chr1_1:73230642-73230661 Msa0042390:intron 20.0%
!!! AAATAGAGAATGCTATTTTT+GGG - chr1_1:73230643-73230662 Msa0042390:intron 20.0%
!!! TAGTAATGGTTTAGTTTTTT+TGG + chr1_1:73230751-73230770 None:intergenic 20.0%
!!! ATTTTGCAAACAATTCATTT+TGG - chr1_1:73231016-73231035 Msa0042390:intron 20.0%
!! TATATATTGTTAGATCTATG+TGG + chr1_1:73231167-73231186 None:intergenic 20.0%
!! ATATTAATATTACGGAAACA+AGG + chr1_1:73231963-73231982 None:intergenic 20.0%
!!! ATCGGTTCAATTTTTTTTTT+TGG - chr1_1:73232087-73232106 Msa0042390:intron 20.0%
!!! ATGTGAATTTTATTTTGGAT+CGG - chr1_1:73232138-73232157 Msa0042390:intron 20.0%
!!! TAAAATGAAATTGTTGTTAG+GGG + chr1_1:73232207-73232226 None:intergenic 20.0%
!!! TAAACAAGACAAGAATTTTT+TGG - chr1_1:73232260-73232279 Msa0042390:intron 20.0%
!!! TTTTTTTTCTTCTCAAAACA+CGG - chr1_1:73233003-73233022 Msa0042390:intron 20.0%
!!! TTTTTATTCTAACAATGAGT+GGG + chr1_1:73233093-73233112 None:intergenic 20.0%
!! AAAAACATGATAGTTGTAAT+TGG - chr1_1:73233306-73233325 Msa0042390:intron 20.0%
!! TGAAGAGTTATTATACTATT+CGG + chr1_1:73233374-73233393 None:intergenic 20.0%
!! TAATCATAACTAATACTCTT+AGG + chr1_1:73233935-73233954 None:intergenic 20.0%
!! GTATTAGTTATGATTATTCA+AGG - chr1_1:73233939-73233958 Msa0042390:intron 20.0%
!!! ACAATTTTCAATTATCTATC+TGG + chr1_1:73234078-73234097 None:intergenic 20.0%
!!! TGAAGAAGTATCAAAATTTT+TGG - chr1_1:73234245-73234264 Msa0042390:intron 20.0%
!! ACTATAGTATAAAGTTAGTT+AGG - chr1_1:73234595-73234614 Msa0042390:intron 20.0%
!! CTATAGTATAAAGTTAGTTA+GGG - chr1_1:73234596-73234615 Msa0042390:intron 20.0%
!! TATAGTATAAAGTTAGTTAG+GGG - chr1_1:73234597-73234616 Msa0042390:intron 20.0%
!!! TTTTGTTGATTTATTCTGAA+CGG + chr1_1:73235973-73235992 None:intergenic 20.0%
!! ATTGTATTTCAAACTCAAAT+TGG - chr1_1:73236261-73236280 Msa0042390:intron 20.0%
!! AACAAAACAAAACAAAATAC+AGG + chr1_1:73236491-73236510 None:intergenic 20.0%
!!! TTTTTAATTGTGAAGTTAAC+AGG - chr1_1:73237096-73237115 Msa0042390:intron 20.0%
!!! TTTTAATTGTGAAGTTAACA+GGG - chr1_1:73237097-73237116 Msa0042390:intron 20.0%
!! TTAATTCTTCCTTACAAAAT+CGG - chr1_1:73237493-73237512 Msa0042390:intron 20.0%
!! TTAAAAGAGTCAATAAAAAG+CGG + chr1_1:73237541-73237560 None:intergenic 20.0%
!! ATAGCATATCATGATAAAAA+CGG - chr1_1:73237669-73237688 Msa0042390:CDS 20.0%
!! CTTTCATTCTTAAAAAGTTA+TGG - chr1_1:73239317-73239336 Msa0042390:intron 20.0%
!! TTAGATAACAAATAACTGAA+GGG + chr1_1:73239532-73239551 None:intergenic 20.0%
!! TTTAGATAACAAATAACTGA+AGG + chr1_1:73239533-73239552 None:intergenic 20.0%
!!! TAAAATTTTTATAGTGCCAA+TGG + chr1_1:73239615-73239634 None:intergenic 20.0%
!! TATTGCAAAATTCAAAGTAA+TGG + chr1_1:73240163-73240182 None:intergenic 20.0%
!!! AAGAAAGTAAGTTATTTCAA+AGG + chr1_1:73240224-73240243 None:intergenic 20.0%
!!! TTTATATATTTTGCGTTGTT+CGG - chr1_1:73229892-73229911 Msa0042390:intron 20.0%
!!! TCTAAAATCAATATTGTTGA+AGG - chr1_1:73240902-73240921 Msa0042390:intron 20.0%
!!! GAATTTCTGTTAGTAATTTT+GGG + chr1_1:73241169-73241188 None:intergenic 20.0%
!!! GTATATATTTTAGATCTATG+TGG + chr1_1:73241197-73241216 None:intergenic 20.0%
!! ACTATTGAAGTTAAGATTAA+TGG - chr1_1:73241249-73241268 Msa0042390:intron 20.0%
!! AAGTGATAAATATGATAAGT+TGG + chr1_1:73233786-73233805 None:intergenic 20.0%
!!! TATTTATTTCTTTTGTCTAG+TGG - chr1_1:73241728-73241747 Msa0042390:intron 20.0%
!!! TTAAGTTTTCCTTATATTCA+AGG - chr1_1:73242130-73242149 Msa0042390:intron 20.0%
!!! ATAAAAATAAAAAGTACGAG+CGG + chr1_1:73242243-73242262 None:intergenic 20.0%
!! TTTCATTGTGATTGAAATAA+TGG - chr1_1:73242758-73242777 Msa0042390:intron 20.0%
!! TTCATTGTGATTGAAATAAT+GGG - chr1_1:73242759-73242778 Msa0042390:intron 20.0%
!!! AAGTCTGAAATTTTAACAAA+AGG - chr1_1:73242787-73242806 Msa0042390:intron 20.0%
!! AAAATAGAGATAGATGTATA+TGG + chr1_1:73242876-73242895 None:intergenic 20.0%
!! GAATACGTAAAAAAAACAAA+TGG - chr1_1:73242938-73242957 Msa0042390:intron 20.0%
!! TATTTCAAAGCTATAACAAA+TGG - chr1_1:73243366-73243385 Msa0042390:intron 20.0%
!! ATTTCCAAAAAAGAAAAAAG+TGG + chr1_1:73243398-73243417 None:intergenic 20.0%
!! AAGAAATTACTCTAACAATT+TGG - chr1_1:73243622-73243641 Msa0042390:intron 20.0%
!!! CTATTTTTTCAAAAACAATG+AGG + chr1_1:73243705-73243724 None:intergenic 20.0%
!! TAAAAAACTATCACACAAAA+TGG - chr1_1:73243866-73243885 Msa0042390:intron 20.0%
!! TTCATCTTAACAAGAATTTA+AGG - chr1_1:73243900-73243919 Msa0042390:intron 20.0%
!!! ATCTTTTTTTGTTTTTGGTA+AGG + chr1_1:73243966-73243985 None:intergenic 20.0%
!! AATTCATTGTGAAGTTAATA+GGG - chr1_1:73244465-73244484 Msa0042390:intron 20.0%
!!! ATTAATCAAGTTTGATAACT+AGG - chr1_1:73244770-73244789 Msa0042390:intron 20.0%
!!! GAAATTTTATTTCTAAGTCT+TGG + chr1_1:73244918-73244937 None:intergenic 20.0%
!! AGAAATAAAATTTCTAACAC+TGG - chr1_1:73244924-73244943 Msa0042390:intron 20.0%
!! ATGAATTATGAAAATACCTT+TGG + chr1_1:73245342-73245361 None:intergenic 20.0%
!! ATAATTCATATTGCCTAATT+TGG - chr1_1:73245353-73245372 Msa0042390:intron 20.0%
!! AGAAATTAATCATAAGTTTC+TGG + chr1_1:73246018-73246037 None:intergenic 20.0%
!! ATCTTTCATTCTTAAAAGTT+AGG - chr1_1:73246288-73246307 Msa0042390:intron 20.0%
!! TCTTTCATTCTTAAAAGTTA+GGG - chr1_1:73246289-73246308 Msa0042390:intron 20.0%
!!! TAATATTTGAGTAATGGATA+TGG - chr1_1:73246562-73246581 Msa0042390:intron 20.0%
!!! TAAATTTTTTGTAGTACCAA+TGG + chr1_1:73246588-73246607 None:intergenic 20.0%
!! GAAAAGTAATTAGAGTTTAA+CGG + chr1_1:73246689-73246708 None:intergenic 20.0%
!!! ACTACTTATTTTAGCTATTT+AGG + chr1_1:73247071-73247090 None:intergenic 20.0%
!!! AAAGTATTGCCTTTATTAAT+AGG + chr1_1:73247200-73247219 None:intergenic 20.0%
! ACCATTTGTAAACATTTCAA+AGG - chr1_1:73228344-73228363 Msa0042390:intron 25.0%
!!! AAATTTTGAAGGTTTCACTT+AGG + chr1_1:73228553-73228572 None:intergenic 25.0%
! CTTTGATTCTTGAAAAGTTA+TGG - chr1_1:73228658-73228677 Msa0042390:intron 25.0%
! TATTCCTTGTGTATATATAG+AGG - chr1_1:73229270-73229289 Msa0042390:intron 25.0%
! CAGTCCTTAATAAGTTTATT+AGG - chr1_1:73229431-73229450 Msa0042390:intron 25.0%
! ATTATTACTTAATGTTGTGC+AGG - chr1_1:73229524-73229543 Msa0042390:CDS 25.0%
! CAAATGACATTTGATTGAAA+TGG - chr1_1:73229618-73229637 Msa0042390:intron 25.0%
!!! ACCTAATGTTTTCAAGTTTA+GGG + chr1_1:73229992-73230011 None:intergenic 25.0%
!!! AACCTAATGTTTTCAAGTTT+AGG + chr1_1:73229993-73230012 None:intergenic 25.0%
!!! ATTCACTTTTCTATTTATCG+TGG - chr1_1:73230044-73230063 Msa0042390:intron 25.0%
!!! TTCACTTTTCTATTTATCGT+GGG - chr1_1:73230045-73230064 Msa0042390:intron 25.0%
! TAAAAAAGCTCTTTCTTGAT+GGG + chr1_1:73230141-73230160 None:intergenic 25.0%
! ATAAAAAAGCTCTTTCTTGA+TGG + chr1_1:73230142-73230161 None:intergenic 25.0%
!!! ATGGTTTAGTTTTTTTGGTT+CGG + chr1_1:73230746-73230765 None:intergenic 25.0%
! AGTTTCAGAACTATTAGTAA+TGG + chr1_1:73230765-73230784 None:intergenic 25.0%
! TATGTAACACTTGTATATAG+AGG + chr1_1:73231081-73231100 None:intergenic 25.0%
!! GTAATAAGGTTAGTTAGAAT+TGG + chr1_1:73231115-73231134 None:intergenic 25.0%
!!! AAGTAATTTTGGGAGTAATA+AGG + chr1_1:73231129-73231148 None:intergenic 25.0%
!! GACTTTCTGTAAGTAATTTT+GGG + chr1_1:73231139-73231158 None:intergenic 25.0%
! ACTATTGAAGTTAAGATTGA+TGG - chr1_1:73231232-73231251 Msa0042390:intron 25.0%
!!! ACCAAACATGTTTTGATATA+CGG - chr1_1:73231297-73231316 Msa0042390:intron 25.0%
! GAAGGGAGTAAAATATAATT+TGG - chr1_1:73231348-73231367 Msa0042390:intron 25.0%
! GGAGTAAAATATAATTTGGA+TGG - chr1_1:73231352-73231371 Msa0042390:intron 25.0%
!!! TTTAGATTTTTGGTTCAGTT+TGG + chr1_1:73231683-73231702 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG + chr1_1:73232061-73232080 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+TGG - chr1_1:73232059-73232078 Msa0042390:intron 25.0%
! TCCAAAATAAAATTCACATG+CGG + chr1_1:73232137-73232156 None:intergenic 25.0%
!!! GCCCATAAATTATATTTTGA+AGG + chr1_1:73232494-73232513 None:intergenic 25.0%
! CCATGTTAATAGTTAAATAC+TGG + chr1_1:73232610-73232629 None:intergenic 25.0%
! CCAGTATTTAACTATTAACA+TGG - chr1_1:73232607-73232626 Msa0042390:intron 25.0%
!! ACGGTTTTTATCACATTATA+AGG + chr1_1:73232675-73232694 None:intergenic 25.0%
!! AATTTTCCACTTATTTACCT+TGG - chr1_1:73232914-73232933 Msa0042390:intron 25.0%
!! ATTTTACCAAGGTAAATAAG+TGG + chr1_1:73232923-73232942 None:intergenic 25.0%
!! TGATAGTTACAATTTTACCA+AGG + chr1_1:73232934-73232953 None:intergenic 25.0%
!!! TGTTTTTTTTCTTGTCAAGT+GGG + chr1_1:73232958-73232977 None:intergenic 25.0%
!! CTTTTTATTCTAACAATGAG+TGG + chr1_1:73233094-73233113 None:intergenic 25.0%
! CACTCATTGTTAGAATAAAA+AGG - chr1_1:73233092-73233111 Msa0042390:intron 25.0%
! TTTATGTGCATAATAGATCA+TGG + chr1_1:73233136-73233155 None:intergenic 25.0%
! TCTAACATGATAGTTGTAAT+TGG - chr1_1:73233271-73233290 Msa0042390:intron 25.0%
! TGATAAGTTTATGATGTGAT+AGG + chr1_1:73233774-73233793 None:intergenic 25.0%
! CTCTATTTATTTATGTCTAG+TGG - chr1_1:73233808-73233827 Msa0042390:intron 25.0%
!!! TGAAATTTTCATGTGTTGTT+AGG + chr1_1:73234121-73234140 None:intergenic 25.0%
!!! TTTTCCATGTGTTATTATGA+AGG - chr1_1:73234188-73234207 Msa0042390:intron 25.0%
!!! CCTTGAATGATTTTTTCTAA+CGG + chr1_1:73234389-73234408 None:intergenic 25.0%
! AATAAACTAGAGTTACTTAG+TGG - chr1_1:73234570-73234589 Msa0042390:intron 25.0%
! GTAGCTTATTTATAGTGATT+TGG + chr1_1:73234633-73234652 None:intergenic 25.0%
! AAAGATATGAAATAGTGCAT+AGG + chr1_1:73234657-73234676 None:intergenic 25.0%
!! ATTCTTGTTCCAATTTTCAA+AGG - chr1_1:73235632-73235651 Msa0042390:intron 25.0%
! AAAACAACTTATGTAAAACG+CGG + chr1_1:73235758-73235777 None:intergenic 25.0%
! TGAAGCAACTAAGTAAAATT+GGG + chr1_1:73236218-73236237 None:intergenic 25.0%
! AATAAACTAGAGTTACTTAG+TGG - chr1_1:73234570-73234589 Msa0042390:intron 25.0%
! GTAGCTTATTTATAGTGATT+TGG + chr1_1:73234633-73234652 None:intergenic 25.0%
! ATTCATTTCTATCTTTGTGA+TGG - chr1_1:73234678-73234697 Msa0042390:intron 25.0%
!!! AGTACAAAATGATATTTTGG+AGG + chr1_1:73236771-73236790 None:intergenic 25.0%
! AAAATAGTCTCGTTAGTTAT+TGG + chr1_1:73236819-73236838 None:intergenic 25.0%
!!! TAGTAAAAGTATCGTATCTT+TGG - chr1_1:73236838-73236857 Msa0042390:intron 25.0%
!! ATGTTGTTTAGATATACCAA+TGG + chr1_1:73237129-73237148 None:intergenic 25.0%
! TATCTAAACAACATTACAGA+AGG - chr1_1:73237135-73237154 Msa0042390:intron 25.0%
! ATCTAAACAACATTACAGAA+GGG - chr1_1:73237136-73237155 Msa0042390:intron 25.0%
!! AGTAATGAAGCCATTATTTT+CGG + chr1_1:73237360-73237379 None:intergenic 25.0%
!! ATTAGTCAAGTTTGATAACT+AGG - chr1_1:73237399-73237418 Msa0042390:intron 25.0%
! TTTACTATTAGATTAGAGGT+CGG + chr1_1:73237609-73237628 None:intergenic 25.0%
! TGACTTTACTATTAGATTAG+AGG + chr1_1:73237613-73237632 None:intergenic 25.0%
! ATCATAATCATAGTATACGT+TGG - chr1_1:73237695-73237714 Msa0042390:intron 25.0%
! TTTATGCAACTATATACTGT+TGG + chr1_1:73237764-73237783 None:intergenic 25.0%
! TGTCTCTCTTAATTAATCAT+CGG - chr1_1:73237867-73237886 Msa0042390:CDS 25.0%
! ATATAGTATTGTTCATGTTG+TGG - chr1_1:73237946-73237965 Msa0042390:intron 25.0%
! ATAGTTCATATTGCCTAATT+TGG - chr1_1:73238291-73238310 Msa0042390:intron 25.0%
! TTCATTTGCACAAATTTCAA+AGG - chr1_1:73238799-73238818 Msa0042390:intron 25.0%
!!! TCCAATTTTCTAAAAGAAGA+TGG - chr1_1:73238982-73239001 Msa0042390:intron 25.0%
!!! ACCATCTTCTTTTAGAAAAT+TGG + chr1_1:73238986-73239005 None:intergenic 25.0%
! TCTAAAAGAAGATGGTAAAA+CGG - chr1_1:73238990-73239009 Msa0042390:intron 25.0%
! TAATACTAGCTACAAATACA+AGG - chr1_1:73239359-73239378 Msa0042390:intron 25.0%
! AATACTAGCTACAAATACAA+GGG - chr1_1:73239360-73239379 Msa0042390:intron 25.0%
!! TAACTTGTGATTCTTGTTAT+TGG - chr1_1:73228835-73228854 Msa0042390:intron 25.0%
! TTTGTTGAATAATAACGTTC+TGG - chr1_1:73240126-73240145 Msa0042390:intron 25.0%
! TAAAAAAGCTCTTTCTTGAT+GGG + chr1_1:73230141-73230160 None:intergenic 25.0%
! ATAAAAAAGCTCTTTCTTGA+TGG + chr1_1:73230142-73230161 None:intergenic 25.0%
! TCTCAATGAAACAGTTTATT+GGG - chr1_1:73240998-73241017 Msa0042390:intron 25.0%
! GAATGTAACACTTGTATATA+AGG + chr1_1:73241077-73241096 None:intergenic 25.0%
! GAATTGGTCAAATTATGTTA+TGG + chr1_1:73231099-73231118 None:intergenic 25.0%
!!! AGTAATTTTGGGAGTAATAA+GGG + chr1_1:73231128-73231147 None:intergenic 25.0%
!!! TAGTAATTTTGGGAGTAATA+AGG + chr1_1:73241159-73241178 None:intergenic 25.0%
!! GGAATTTCTGTTAGTAATTT+TGG + chr1_1:73241170-73241189 None:intergenic 25.0%
! AACTTTGTAAATACAAACCA+AGG - chr1_1:73241306-73241325 Msa0042390:intron 25.0%
!!! AAATATTCCGCTCTAAAAAA+TGG - chr1_1:73241392-73241411 Msa0042390:intron 25.0%
! GAATGAGTATAGAAAATCAA+GGG + chr1_1:73241648-73241667 None:intergenic 25.0%
! AGAATGAGTATAGAAAATCA+AGG + chr1_1:73241649-73241668 None:intergenic 25.0%
! TAATCATAACCAATACTCTT+AGG + chr1_1:73241854-73241873 None:intergenic 25.0%
!!! TGCTACTTTTCTTAATATCA+TGG + chr1_1:73242091-73242110 None:intergenic 25.0%
!! AAGAAAAGTAGCATTTTGTA+CGG - chr1_1:73242098-73242117 Msa0042390:intron 25.0%
!!! ATTGAAAGTTGATGTATAAG+TGG + chr1_1:73234355-73234374 None:intergenic 25.0%
! TCAATAAAAAAATTTGCCGT+TGG - chr1_1:73242299-73242318 Msa0042390:intron 25.0%
!! AAAAAGTCATATTTTGTGTG+TGG + chr1_1:73242343-73242362 None:intergenic 25.0%
! ATAAAAAACGTGACGATAAA+AGG + chr1_1:73242384-73242403 None:intergenic 25.0%
! GACACCATAAAAAAAAATAC+AGG + chr1_1:73242407-73242426 None:intergenic 25.0%
!!! GTATTTTTTTTTATGGTGTC+CGG - chr1_1:73242407-73242426 Msa0042390:intron 25.0%
!!! TATTTTTTTTTATGGTGTCC+GGG - chr1_1:73242408-73242427 Msa0042390:intron 25.0%
! GTATAATACATTCAAAGTCT+GGG + chr1_1:73242441-73242460 None:intergenic 25.0%
! AATCTTGTGTTTAAACAACA+TGG + chr1_1:73242846-73242865 None:intergenic 25.0%
!! TGTTGTTTAAACACAAGATT+TGG - chr1_1:73242846-73242865 Msa0042390:intron 25.0%
! GTTGTTTAAACACAAGATTT+GGG - chr1_1:73242847-73242866 Msa0042390:intron 25.0%
!! TATCTTTTATACACCTTAGA+CGG - chr1_1:73242908-73242927 Msa0042390:intron 25.0%
! TAAAAAAAACAAATGGATGC+TGG - chr1_1:73242945-73242964 Msa0042390:intron 25.0%
! TCATATTTCAACATCAAAAG+TGG + chr1_1:73242980-73242999 None:intergenic 25.0%
!!! AAGAAAGTTTTGTATATTGC+AGG - chr1_1:73243170-73243189 Msa0042390:intron 25.0%
!!! TATTGCTTTTGAGAAATGAA+GGG + chr1_1:73243244-73243263 None:intergenic 25.0%
! ATAAAATCAGTGACATTAAC+TGG - chr1_1:73243312-73243331 Msa0042390:intron 25.0%
!!! ATGTCCACTTTTTTCTTTTT+TGG - chr1_1:73243391-73243410 Msa0042390:intron 25.0%
! AGAGTACATTTCTTGTTAAA+AGG + chr1_1:73243432-73243451 None:intergenic 25.0%
! AGAAATGTACTCTAACAATT+TGG - chr1_1:73243439-73243458 Msa0042390:intron 25.0%
! AAAGACAACATATGAAAAGT+AGG - chr1_1:73243935-73243954 Msa0042390:intron 25.0%
! CAATTCATTGTGAAGTTAAT+AGG - chr1_1:73244464-73244483 Msa0042390:intron 25.0%
! ATGTTGTTAAGATATACCAA+TGG + chr1_1:73244497-73244516 None:intergenic 25.0%
! TATCTTAACAACATTACAGA+AGG - chr1_1:73244503-73244522 Msa0042390:intron 25.0%
! ATCTTAACAACATTACAGAA+GGG - chr1_1:73244504-73244523 Msa0042390:intron 25.0%
!!! AACTTTAGTTTGTGATATAG+AGG + chr1_1:73244602-73244621 None:intergenic 25.0%
!!! AGTAATGAGACCTTTATTTT+CGG + chr1_1:73244730-73244749 None:intergenic 25.0%
! ATAGACTTCAACATTATAAG+CGG + chr1_1:73244976-73244995 None:intergenic 25.0%
! TGATTGAGCATATAACTATT+AGG + chr1_1:73245300-73245319 None:intergenic 25.0%
!!! GACATTTTTTATATGACATC+AGG + chr1_1:73245774-73245793 None:intergenic 25.0%
! AATAGTAAAGAGCTACATTT+AGG + chr1_1:73246123-73246142 None:intergenic 25.0%
!! TAACTTGTGATTCTTGTTAT+TGG - chr1_1:73228835-73228854 Msa0042390:intron 25.0%
! ATTAACAAGATGCATATTTG+CGG + chr1_1:73246543-73246562 None:intergenic 25.0%
! GTAACATAAAAGTGACATTA+TGG + chr1_1:73246634-73246653 None:intergenic 25.0%
! TGATTCTGAGTGTTTCTTTT+TGG - chr1_1:73228102-73228121 Msa0042390:intron 30.0%
TATGACGTCGAAACAAAAAT+TGG + chr1_1:73228245-73228264 None:intergenic 30.0%
!! GCCTTTGAAATGTTTACAAA+TGG + chr1_1:73228348-73228367 None:intergenic 30.0%
TCTTCTAGATGAAGTTATTC+AGG - chr1_1:73228424-73228443 Msa0042390:intron 30.0%
AATACTAGCTGCTAATACAA+GGG - chr1_1:73228701-73228720 Msa0042390:intron 30.0%
! ATATGAATGTCTTTTGCAGA+TGG - chr1_1:73229126-73229145 Msa0042390:CDS 30.0%
! TATGAATGTCTTTTGCAGAT+GGG - chr1_1:73229127-73229146 Msa0042390:CDS 30.0%
ACAAGGAATAACAATGAGAA+AGG + chr1_1:73229260-73229279 None:intergenic 30.0%
GTAACCTCTATATATACACA+AGG + chr1_1:73229277-73229296 None:intergenic 30.0%
GTGTATATATAGAGGTTACA+AGG - chr1_1:73229278-73229297 Msa0042390:intron 30.0%
TGCGCCTAATAAACTTATTA+AGG + chr1_1:73229438-73229457 None:intergenic 30.0%
! CTTAAAAGTGCAGAATTGTA+AGG - chr1_1:73229474-73229493 Msa0042390:intron 30.0%
GCTAAAATCAACTAATGCAA+GGG + chr1_1:73229797-73229816 None:intergenic 30.0%
ACCCTAAACTTGAAAACATT+AGG - chr1_1:73229988-73230007 Msa0042390:intron 30.0%
AAAAAAGCTCTTTCTTGATG+GGG + chr1_1:73230140-73230159 None:intergenic 30.0%
ATCAAAAGACTTCCTAACAA+TGG + chr1_1:73230215-73230234 None:intergenic 30.0%
! TTAGGAAGTCTTTTGATGTA+AGG - chr1_1:73230218-73230237 Msa0042390:intron 30.0%
AACAGTAGTATAAGAATCGA+TGG + chr1_1:73230256-73230275 None:intergenic 30.0%
! ATCGATTCTTATACTACTGT+TGG - chr1_1:73230255-73230274 Msa0042390:intron 30.0%
TCGATTCTTATACTACTGTT+GGG - chr1_1:73230256-73230275 Msa0042390:intron 30.0%
AAGTACAATATGCATGTGTT+TGG - chr1_1:73230386-73230405 Msa0042390:intron 30.0%
!! GTTTTCAGTCAAAGTGTTAT+GGG - chr1_1:73230440-73230459 Msa0042390:intron 30.0%
GCAATTTCATAAGTTATGCA+TGG - chr1_1:73230521-73230540 Msa0042390:CDS 30.0%
ACAGAATATACAAGTAGATG+CGG - chr1_1:73230693-73230712 Msa0042390:CDS 30.0%
!!! TTAGTTTTTTTGGTTCGGTT+CGG + chr1_1:73230741-73230760 None:intergenic 30.0%
TGGCACCAATAATAACAATT+CGG - chr1_1:73230910-73230929 Msa0042390:intron 30.0%
! CTGAACCGAATTGTTATTAT+TGG + chr1_1:73230918-73230937 None:intergenic 30.0%
GAAATGCAAATAGTTCAGTT+TGG - chr1_1:73230981-73231000 Msa0042390:intron 30.0%
!!! GCAAACAATTCATTTTGGTT+CGG - chr1_1:73231021-73231040 Msa0042390:intron 30.0%
TAACACTTGTATATAGAGGT+GGG + chr1_1:73231077-73231096 None:intergenic 30.0%
! GGACTTTCTGTAAGTAATTT+TGG + chr1_1:73231140-73231159 None:intergenic 30.0%
GATAGAAATTATCACCCATA+TGG - chr1_1:73231258-73231277 Msa0042390:intron 30.0%
AAACATGTTTGGTAAGATGA+TGG + chr1_1:73231290-73231309 None:intergenic 30.0%
!!! CCAAACATGTTTTGATATAC+GGG - chr1_1:73231298-73231317 Msa0042390:intron 30.0%
AACTTTGTCAATACAAACCA+AGG - chr1_1:73231326-73231345 Msa0042390:intron 30.0%
! TTATATTTTACTCCCTTCCT+TGG + chr1_1:73231346-73231365 None:intergenic 30.0%
AGCAGACAAAGTAAAAAGTA+AGG - chr1_1:73231388-73231407 Msa0042390:intron 30.0%
! GTTTTTGCAGTTTTCACTTT+GGG + chr1_1:73231446-73231465 None:intergenic 30.0%
! AGTTTTTGCAGTTTTCACTT+TGG + chr1_1:73231447-73231466 None:intergenic 30.0%
AAAACTGCAAAAACTGCATT+TGG - chr1_1:73231452-73231471 Msa0042390:intron 30.0%
!! TTTGGTTTGGATTACAACAA+AGG - chr1_1:73231470-73231489 Msa0042390:intron 30.0%
AACAAAACTAACTTACCGTA+GGG + chr1_1:73231527-73231546 None:intergenic 30.0%
!!! GTAAGTTAGTTTTGTTGTAC+TGG - chr1_1:73231531-73231550 Msa0042390:intron 30.0%
!!! ATTTTTGGTTCAGTTTGGTT+TGG + chr1_1:73231678-73231697 None:intergenic 30.0%
CGGAAACAAGGTAAAATAAT+AGG + chr1_1:73231951-73231970 None:intergenic 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG + chr1_1:73232056-73232075 None:intergenic 30.0%
TAAACCGCATATATTTGGAT+CGG - chr1_1:73232064-73232083 Msa0042390:intron 30.0%
!! ACCGCATGTGAATTTTATTT+TGG - chr1_1:73232133-73232152 Msa0042390:intron 30.0%
AAGGGAAACTTATTTGAACA+GGG + chr1_1:73232702-73232721 None:intergenic 30.0%
!!! GTGTTTTTTTTCTTGTCAAG+TGG + chr1_1:73232959-73232978 None:intergenic 30.0%
ACATATGTATTGGAATGTTG+GGG + chr1_1:73233041-73233060 None:intergenic 30.0%
GACATATGTATTGGAATGTT+GGG + chr1_1:73233042-73233061 None:intergenic 30.0%
AGATTGAAGTTTGAGTGTAT+AGG - chr1_1:73233832-73233851 Msa0042390:intron 30.0%
ATGATTATTCAAGGTCACAA+AGG - chr1_1:73233948-73233967 Msa0042390:intron 30.0%
! AATCTTTTGACAATGTCTCT+TGG - chr1_1:73233990-73234009 Msa0042390:intron 30.0%
! ATCTTTTGACAATGTCTCTT+GGG - chr1_1:73233991-73234010 Msa0042390:intron 30.0%
CAAACCTTCATAATAACACA+TGG + chr1_1:73234195-73234214 None:intergenic 30.0%
CCGTTAGAAAAAATCATTCA+AGG - chr1_1:73234386-73234405 Msa0042390:intron 30.0%
GATAAAAACGTGACGATAAA+AGG + chr1_1:73234449-73234468 None:intergenic 30.0%
TAGATTGTGTAATTCTCTCT+AGG + chr1_1:73234706-73234725 None:intergenic 30.0%
TTGCATTTGATCTAGAAACA+TGG - chr1_1:73234734-73234753 Msa0042390:intron 30.0%
GAATCCTTTGATTCATAACA+TGG - chr1_1:73234756-73234775 Msa0042390:intron 30.0%
GATACCATGTTATGAATCAA+AGG + chr1_1:73234763-73234782 None:intergenic 30.0%
! GTTGTTCAAATTCGTTGATT+TGG + chr1_1:73235118-73235137 None:intergenic 30.0%
GGAAAGAATCTGTTATTCAA+TGG - chr1_1:73235453-73235472 Msa0042390:intron 30.0%
! ACTTGAGTAAAAGTTCGTTT+TGG - chr1_1:73235588-73235607 Msa0042390:intron 30.0%
!!! AAATCAGCTTTTCTAAGATG+TGG + chr1_1:73235729-73235748 None:intergenic 30.0%
! GCGTTTTACATAAGTTGTTT+TGG - chr1_1:73235757-73235776 Msa0042390:intron 30.0%
AACACATTGCGAAACAAAAT+TGG + chr1_1:73235847-73235866 None:intergenic 30.0%
!! GATTTTGGTATAATCTGTTC+TGG - chr1_1:73235945-73235964 Msa0042390:intron 30.0%
TTTCTCACATGTTCTCAATT+GGG - chr1_1:73236130-73236149 Msa0042390:intron 30.0%
ATTGGGGTAAAACTAGTAAA+TGG + chr1_1:73236201-73236220 None:intergenic 30.0%
GAAGCAACTAAGTAAAATTG+GGG + chr1_1:73236217-73236236 None:intergenic 30.0%
CTGAAGCAACTAAGTAAAAT+TGG + chr1_1:73236219-73236238 None:intergenic 30.0%
GATAAAAACGTGACGATAAA+AGG + chr1_1:73234449-73234468 None:intergenic 30.0%
!!! AAGCGACACTTATTTTGAAA+CGG + chr1_1:73236644-73236663 None:intergenic 30.0%
TTCCTTAATCTGTGTGTAAT+TGG - chr1_1:73236875-73236894 Msa0042390:intron 30.0%
AACCAATTACACACAGATTA+AGG + chr1_1:73236880-73236899 None:intergenic 30.0%
!!! AGAGCTGTTTTTGAATTGTA+AGG - chr1_1:73237254-73237273 Msa0042390:intron 30.0%
!!! TAATCTTGTTTTTCTCACTC+AGG - chr1_1:73237309-73237328 Msa0042390:intron 30.0%
ATTGAAGATGCCGAAAATAA+TGG - chr1_1:73237347-73237366 Msa0042390:intron 30.0%
TAATCAGTAATTACCTTTCC+AGG + chr1_1:73237383-73237402 None:intergenic 30.0%
!! CTTACAAGTTTTATGAGTCT+AGG + chr1_1:73237432-73237451 None:intergenic 30.0%
!! TTTGTTTTCAATGTGAGACT+TGG - chr1_1:73237568-73237587 Msa0042390:intron 30.0%
TATAAAGTCTGTTCTTGTTG+AGG - chr1_1:73238012-73238031 Msa0042390:intron 30.0%
!!! AGTTGATGGAGTTTTTGAAA+AGG - chr1_1:73238189-73238208 Msa0042390:intron 30.0%
TGATTGAGCATATAGCTATT+AGG + chr1_1:73238238-73238257 None:intergenic 30.0%
!! ATGAACTATGAAAGTACCTT+TGG + chr1_1:73238280-73238299 None:intergenic 30.0%
TATTGCCTAATTTGGTTGAT+AGG - chr1_1:73238299-73238318 Msa0042390:intron 30.0%
TTCAACCTATCAACCAAATT+AGG + chr1_1:73238307-73238326 None:intergenic 30.0%
!! ACCTTGTATACTTTTTGTGT+TGG - chr1_1:73238511-73238530 Msa0042390:intron 30.0%
!! CCTTGTATACTTTTTGTGTT+GGG - chr1_1:73238512-73238531 Msa0042390:intron 30.0%
TTCAAAATTGCACTTTCAGT+TGG + chr1_1:73238634-73238653 None:intergenic 30.0%
!! ACTGAAAGTGCAATTTTGAA+TGG - chr1_1:73238634-73238653 Msa0042390:intron 30.0%
TTCAGAATAGTAAAATCACC+TGG + chr1_1:73238667-73238686 None:intergenic 30.0%
!! AGTTTTTAGACAACAACTTG+AGG - chr1_1:73238757-73238776 Msa0042390:intron 30.0%
! TGAGTTTAATGGATATGCAT+CGG - chr1_1:73239587-73239606 Msa0042390:intron 30.0%
AGTAACATAAAGTGACGTTA+TGG + chr1_1:73239661-73239680 None:intergenic 30.0%
ATATTTCCAAATTGTTGTGC+AGG - chr1_1:73239930-73239949 Msa0042390:intron 30.0%
!!! ACCTAATGTTTTCAGGTTTA+GGG + chr1_1:73240413-73240432 None:intergenic 30.0%
!!! AACCTAATGTTTTCAGGTTT+AGG + chr1_1:73240414-73240433 None:intergenic 30.0%
AAAAAAGCTCTTTCTTGATG+GGG + chr1_1:73230140-73230159 None:intergenic 30.0%
! ATCAAAAGTTTTCCTGACAA+TGG + chr1_1:73240638-73240657 None:intergenic 30.0%
AAGTACAATTTGCATGTGTT+TGG - chr1_1:73240801-73240820 Msa0042390:intron 30.0%
GTCTCAATGAAACAGTTTAT+TGG - chr1_1:73240997-73241016 Msa0042390:intron 30.0%
GTAATAAGGGTAGTTAGAAT+TGG + chr1_1:73241145-73241164 None:intergenic 30.0%
! ATTTTAGATCTATGTGGCTT+AGG + chr1_1:73241191-73241210 None:intergenic 30.0%
ACAAAGTTTCCTACCTATAT+GGG + chr1_1:73241294-73241313 None:intergenic 30.0%
TACAAAGTTTCCTACCTATA+TGG + chr1_1:73241295-73241314 None:intergenic 30.0%
TTGTAAATACAAACCAAGGA+AGG - chr1_1:73241310-73241329 Msa0042390:intron 30.0%
TGTAAATACAAACCAAGGAA+GGG - chr1_1:73241311-73241330 Msa0042390:intron 30.0%
AATTATATTACTCCCTTCCT+TGG + chr1_1:73241326-73241345 None:intergenic 30.0%
AGGAAGGGAGTAATATAATT+TGG - chr1_1:73241326-73241345 Msa0042390:intron 30.0%
AGGGAGTAATATAATTTGGA+TGG - chr1_1:73241330-73241349 Msa0042390:intron 30.0%
TGCAGACAAATTAAAAAGCA+AGG - chr1_1:73241366-73241385 Msa0042390:intron 30.0%
!!! TCTTCTTCCATTTTTTAGAG+CGG + chr1_1:73241402-73241421 None:intergenic 30.0%
TTTCCGTAACAAGAGAATTA+AGG - chr1_1:73241968-73241987 Msa0042390:intron 30.0%
TTCCGTAACAAGAGAATTAA+GGG - chr1_1:73241969-73241988 Msa0042390:intron 30.0%
TGATTGTGACCTTGAATATA+AGG + chr1_1:73242142-73242161 None:intergenic 30.0%
TAGGATTTAGTACAATCTAC+CGG + chr1_1:73242204-73242223 None:intergenic 30.0%
!!! ATTTTTTTTTATGGTGTCCG+GGG - chr1_1:73242409-73242428 Msa0042390:intron 30.0%
CGTATAATACATTCAAAGTC+TGG + chr1_1:73242442-73242461 None:intergenic 30.0%
! AAACTTTCTTTTCTGTCCAT+CGG + chr1_1:73243160-73243179 None:intergenic 30.0%
!! CTATTGCTTTTGAGAAATGA+AGG + chr1_1:73243245-73243264 None:intergenic 30.0%
! TTTTACCAAAATTTCAACCG+TGG - chr1_1:73243793-73243812 Msa0042390:intron 30.0%
AACATGACAATAGTAGCTTA+TGG - chr1_1:73244094-73244113 Msa0042390:intron 30.0%
ATAGTAGCTTATGGATCTTA+AGG - chr1_1:73244103-73244122 Msa0042390:intron 30.0%
! GATTATTACCAGGAATTTTC+AGG + chr1_1:73244137-73244156 None:intergenic 30.0%
TGTACTACTAATTACTACCA+AGG + chr1_1:73244205-73244224 None:intergenic 30.0%
CAGTGAAGATATAAAAGAGA+GGG + chr1_1:73244398-73244417 None:intergenic 30.0%
ACAGTGAAGATATAAAAGAG+AGG + chr1_1:73244399-73244418 None:intergenic 30.0%
!!! TAATCTTGTTTTTCTCACTC+AGG - chr1_1:73237309-73237328 Msa0042390:intron 30.0%
ATTGAAGATGCCGAAAATAA+AGG - chr1_1:73237347-73237366 Msa0042390:intron 30.0%
AATCAGTAATATACCTTTGC+AGG + chr1_1:73244753-73244772 None:intergenic 30.0%
!! TCTTACAAGTTTTATGAGTC+CGG + chr1_1:73244805-73244824 None:intergenic 30.0%
GACATGAACAATACTATATG+TGG + chr1_1:73245007-73245026 None:intergenic 30.0%
ATATAGTATTGTTCATGTCG+TGG - chr1_1:73245008-73245027 Msa0042390:intron 30.0%
TATAAAGACTGTTCTTGTTG+AGG - chr1_1:73245074-73245093 Msa0042390:intron 30.0%
!!! AGTTGATGGAGTTTTTGAAA+AGG - chr1_1:73238189-73238208 Msa0042390:intron 30.0%
TATTGCCTAATTTGGTTGAT+AGG - chr1_1:73238299-73238318 Msa0042390:intron 30.0%
TTCAACCTATCAACCAAATT+AGG + chr1_1:73238307-73238326 None:intergenic 30.0%
!! ACCTTGTATACTTTTTGTGT+TGG - chr1_1:73238511-73238530 Msa0042390:intron 30.0%
!! CCTTGTATACTTTTTGTGTT+GGG - chr1_1:73238512-73238531 Msa0042390:intron 30.0%
TTCAAAATTGCACTTTCAGT+TGG + chr1_1:73238634-73238653 None:intergenic 30.0%
!! ACTGAAAGTGCAATTTTGAA+TGG - chr1_1:73238634-73238653 Msa0042390:intron 30.0%
TTCAGAATAGTAAAATCACC+TGG + chr1_1:73238667-73238686 None:intergenic 30.0%
TCCATTTGAACACATTTCAA+AGG - chr1_1:73245864-73245883 Msa0042390:CDS 30.0%
CAAGCATATTGTTCTTACTT+AGG + chr1_1:73246043-73246062 None:intergenic 30.0%
TATAATATATGTGCATGACC+TGG + chr1_1:73246221-73246240 None:intergenic 30.0%
TATAGTTCACAAAACCTTGT+TGG + chr1_1:73246367-73246386 None:intergenic 30.0%
!! AACAAGGTTTTGTGAACTAT+AGG - chr1_1:73246366-73246385 Msa0042390:intron 30.0%
TTTGCGGTTATATATTTGCA+GGG + chr1_1:73246527-73246546 None:intergenic 30.0%
ATTTGCGGTTATATATTTGC+AGG + chr1_1:73246528-73246547 None:intergenic 30.0%
ACATTATGGTGAGATATGAT+TGG + chr1_1:73246620-73246639 None:intergenic 30.0%
AAAATTGATGCTTTGGTTGC+AGG - chr1_1:73227871-73227890 Msa0042390:three_prime_UTR 35.0%
AAATTGATGCTTTGGTTGCA+GGG - chr1_1:73227872-73227891 Msa0042390:three_prime_UTR 35.0%
TTCTACACCATACACCTATA+GGG + chr1_1:73228036-73228055 None:intergenic 35.0%
GTTTCGACGTCATATGTAAT+TGG - chr1_1:73228251-73228270 Msa0042390:CDS 35.0%
AATTAGTAAACAGCCTCAAG+TGG + chr1_1:73228318-73228337 None:intergenic 35.0%
! GAGAGTCTCATTTGAAATGA+AGG + chr1_1:73228512-73228531 None:intergenic 35.0%
AGAATTAGAAGATGACAGTG+AGG - chr1_1:73228619-73228638 Msa0042390:intron 35.0%
CTTGTATTAGCAGCTAGTAT+TGG + chr1_1:73228702-73228721 None:intergenic 35.0%
CAATACTAGCTGCTAATACA+AGG - chr1_1:73228700-73228719 Msa0042390:intron 35.0%
!!! GGATTTTGTTTTGACCAACA+AGG - chr1_1:73228722-73228741 Msa0042390:intron 35.0%
TGTAATTCACAGAACCTTGT+TGG + chr1_1:73228739-73228758 None:intergenic 35.0%
AACAAGGTTCTGTGAATTAC+AGG - chr1_1:73228738-73228757 Msa0042390:intron 35.0%
TACCAGTAAACCTTCTTTCA+AGG + chr1_1:73228803-73228822 None:intergenic 35.0%
TGAAAGAAGGTTTACTGGTA+TGG - chr1_1:73228803-73228822 Msa0042390:intron 35.0%
! TACTTTTGTATGTTAGGCAC+CGG + chr1_1:73229016-73229035 None:intergenic 35.0%
! ATGAGCTTTCCTACATTTTC+TGG + chr1_1:73229202-73229221 None:intergenic 35.0%
AGGACTGTAAACTGTGAATA+AGG + chr1_1:73229418-73229437 None:intergenic 35.0%
GCAGAATTGTAAGGTGATTA+TGG - chr1_1:73229483-73229502 Msa0042390:CDS 35.0%
ATTACTTAATGTTGTGCAGG+TGG - chr1_1:73229527-73229546 Msa0042390:CDS 35.0%
!!! CAATACTTTTTGAGTCCATC+AGG - chr1_1:73229583-73229602 Msa0042390:CDS 35.0%
GGCTAAAATCAACTAATGCA+AGG + chr1_1:73229798-73229817 None:intergenic 35.0%
GCTAGAAATTGAAGCTTAAG+AGG + chr1_1:73229819-73229838 None:intergenic 35.0%
AAAAGACTTCCTAACAATGG+TGG + chr1_1:73230212-73230231 None:intergenic 35.0%
!! CGTTTTCAGTCAAAGTGTTA+TGG - chr1_1:73230439-73230458 Msa0042390:intron 35.0%
TGTTATGGGATAAGCTTGAA+GGG - chr1_1:73230454-73230473 Msa0042390:intron 35.0%
CAGAATATACAAGTAGATGC+GGG - chr1_1:73230694-73230713 Msa0042390:CDS 35.0%
!!! CGGTTCAAAACATTTTGGTT+CGG - chr1_1:73230955-73230974 Msa0042390:intron 35.0%
GTAACACTTGTATATAGAGG+TGG + chr1_1:73231078-73231097 None:intergenic 35.0%
TTGTTAGATCTATGTGGCTT+AGG + chr1_1:73231161-73231180 None:intergenic 35.0%
!! TGTTTGGTAAGATGATGGAA+TGG + chr1_1:73231285-73231304 None:intergenic 35.0%
CCCGTATATCAAAACATGTT+TGG + chr1_1:73231301-73231320 None:intergenic 35.0%
!!! ACATGTTTTGATATACGGGT+AGG - chr1_1:73231302-73231321 Msa0042390:intron 35.0%
TTGTCAATACAAACCAAGGA+AGG - chr1_1:73231330-73231349 Msa0042390:intron 35.0%
TGTCAATACAAACCAAGGAA+GGG - chr1_1:73231331-73231350 Msa0042390:intron 35.0%
TGCAAAAACTGCATTTGGTT+TGG - chr1_1:73231457-73231476 Msa0042390:intron 35.0%
ACAAAACTAACTTACCGTAG+GGG + chr1_1:73231526-73231545 None:intergenic 35.0%
CAACAAAACTAACTTACCGT+AGG + chr1_1:73231528-73231547 None:intergenic 35.0%
!!! AGTTAGTTTTGTTGTACTGG+TGG - chr1_1:73231534-73231553 Msa0042390:intron 35.0%
CTTATTTGAACAGGGTTAGA+CGG + chr1_1:73232694-73232713 None:intergenic 35.0%
GAAGGGAAACTTATTTGAAC+AGG + chr1_1:73232703-73232722 None:intergenic 35.0%
TAAGTTTCCCTTCTCAAATC+TGG - chr1_1:73232710-73232729 Msa0042390:intron 35.0%
GGACATATGTATTGGAATGT+TGG + chr1_1:73233043-73233062 None:intergenic 35.0%
!!! CGAAAGCTGTCTTTTTTTGA+CGG + chr1_1:73233337-73233356 None:intergenic 35.0%
CGTCAAAAAAAGACAGCTTT+CGG - chr1_1:73233335-73233354 Msa0042390:intron 35.0%
TACGTGTTCAATGACAGTTT+CGG + chr1_1:73233461-73233480 None:intergenic 35.0%
! CTACATAATCAAGCTTTTGC+AGG - chr1_1:73233597-73233616 Msa0042390:intron 35.0%
GCTTTCTTCATCGGATAATA+TGG - chr1_1:73233619-73233638 Msa0042390:intron 35.0%
TGTCTCTTGGGAAAACAATT+AGG - chr1_1:73234003-73234022 Msa0042390:intron 35.0%
ATTTCAAAAAAAGCCCCCAA+TGG - chr1_1:73234135-73234154 Msa0042390:intron 35.0%
TGGTACTTCATCTACATGTT+AGG + chr1_1:73234307-73234326 None:intergenic 35.0%
CTAGATCAAATGCAATCGAA+AGG + chr1_1:73234729-73234748 None:intergenic 35.0%
TCTTCTTCTTCATCAGAAAC+TGG + chr1_1:73234814-73234833 None:intergenic 35.0%
ATCTTCTTCTTCATCACCAT+CGG + chr1_1:73234839-73234858 None:intergenic 35.0%
!! TCGCAAGTTTCAGTTGTTTT+CGG - chr1_1:73234898-73234917 Msa0042390:intron 35.0%
!! TCAGTTGTTTTCGGTAGTTT+TGG - chr1_1:73234907-73234926 Msa0042390:intron 35.0%
CTTGAATCAACGAGAAAACA+AGG + chr1_1:73235012-73235031 None:intergenic 35.0%
!! AATCAAGAATCGGTGTTTTC+TGG + chr1_1:73235077-73235096 None:intergenic 35.0%
!! GAAAACACCGATTCTTGATT+CGG - chr1_1:73235077-73235096 Msa0042390:intron 35.0%
ATCAACTCCGAATCAAGAAT+CGG + chr1_1:73235087-73235106 None:intergenic 35.0%
! ATTGCGTTTTTCATTTGCAC+AGG - chr1_1:73235391-73235410 Msa0042390:intron 35.0%
! CTTGTTCCAATTTTCAAAGG+AGG - chr1_1:73235635-73235654 Msa0042390:intron 35.0%
GGTAACAAAATTCTGCAAAC+AGG + chr1_1:73235663-73235682 None:intergenic 35.0%
ACTTGTAACAAACACGATTC+TGG + chr1_1:73235684-73235703 None:intergenic 35.0%
!! TTCTAAGATGTGGTATTGCA+AGG + chr1_1:73235719-73235738 None:intergenic 35.0%
!!! AGATTCTGAAAAAGCGCTTT+TGG - chr1_1:73235915-73235934 Msa0042390:intron 35.0%
!!! GATTCTGAAAAAGCGCTTTT+GGG - chr1_1:73235916-73235935 Msa0042390:intron 35.0%
!!! GTTTTTTGCAAAAGCACTTC+TGG - chr1_1:73236031-73236050 Msa0042390:intron 35.0%
!! AAGCACTTCTGGAATAAGAA+TGG - chr1_1:73236042-73236061 Msa0042390:intron 35.0%
!! AGCACTTCTGGAATAAGAAT+GGG - chr1_1:73236043-73236062 Msa0042390:intron 35.0%
!! TTCTGGAATAAGAATGGGTA+AGG - chr1_1:73236048-73236067 Msa0042390:intron 35.0%
AGAAGTCAGAAACATGTAAG+AGG - chr1_1:73236086-73236105 Msa0042390:intron 35.0%
CTTTCTCACATGTTCTCAAT+TGG - chr1_1:73236129-73236148 Msa0042390:intron 35.0%
!!! ATTTCCCCATTTTGAGTTTG+AGG - chr1_1:73236287-73236306 Msa0042390:intron 35.0%
!!! TTTCCCCATTTTGAGTTTGA+GGG - chr1_1:73236288-73236307 Msa0042390:intron 35.0%
ACTCTAGCAGAAAGTTAGTT+AGG - chr1_1:73236358-73236377 Msa0042390:intron 35.0%
!!! GACACTTATTTTGAAACGGA+TGG + chr1_1:73236640-73236659 None:intergenic 35.0%
!! ATGATATTTTGGAGGTTGTG+TGG + chr1_1:73236763-73236782 None:intergenic 35.0%
GTAATTGGTTAAAGCCACAA+CGG - chr1_1:73236890-73236909 Msa0042390:intron 35.0%
AATAATGGCTTCATTACTCC+TGG - chr1_1:73237362-73237381 Msa0042390:intron 35.0%
! AAAATTATACTGCGCGCTTT+TGG - chr1_1:73238133-73238152 Msa0042390:intron 35.0%
AAAAACTCCATCAACTCCTT+TGG + chr1_1:73238185-73238204 None:intergenic 35.0%
TGAAAATCCTGTCAATCCAA+AGG - chr1_1:73238261-73238280 Msa0042390:intron 35.0%
TATCTAAGTTTCTCTCCTTG+AGG + chr1_1:73238474-73238493 None:intergenic 35.0%
GGAGAGAAACTTAGATATCA+AGG - chr1_1:73238477-73238496 Msa0042390:intron 35.0%
! CCCAACACAAAAAGTATACA+AGG + chr1_1:73238515-73238534 None:intergenic 35.0%
!! GAAAGTGCAATTTTGAATGG+AGG - chr1_1:73238637-73238656 Msa0042390:intron 35.0%
TCTCCTAGATGAAGTTATTC+AGG - chr1_1:73238879-73238898 Msa0042390:intron 35.0%
CTACCTGAATAACTTCATCT+AGG + chr1_1:73228430-73228449 None:intergenic 35.0%
! GACAAAGCTTTGTCAAGATT+TGG + chr1_1:73239225-73239244 None:intergenic 35.0%
TATAATATATGTGCGTGACC+TGG + chr1_1:73239251-73239270 None:intergenic 35.0%
TTGAGTTCAATAGTGACATG+AGG - chr1_1:73239278-73239297 Msa0042390:intron 35.0%
TATAGTTCGCAAAACCTTGT+TGG + chr1_1:73239398-73239417 None:intergenic 35.0%
! AACAAGGTTTTGCGAACTAT+AGG - chr1_1:73239397-73239416 Msa0042390:intron 35.0%
!! TGCTTTGAAAGAAGGTTTAC+TGG - chr1_1:73239457-73239476 Msa0042390:intron 35.0%
! GAGTTTAATGGATATGCATC+GGG - chr1_1:73239588-73239607 Msa0042390:intron 35.0%
! AGTTTAATGGATATGCATCG+GGG - chr1_1:73239589-73239608 Msa0042390:intron 35.0%
ACGTTATGGTGAGATATGAT+TGG + chr1_1:73239647-73239666 None:intergenic 35.0%
! ATGTGAATGTCTTTTGCAGA+TGG - chr1_1:73239729-73239748 Msa0042390:intron 35.0%
! TGTGAATGTCTTTTGCAGAT+GGG - chr1_1:73239730-73239749 Msa0042390:intron 35.0%
TGCGTCGAATAAACATACTA+AGG + chr1_1:73239845-73239864 None:intergenic 35.0%
!!! CAATACTTTTTGAGTCCATC+AGG - chr1_1:73229583-73229602 Msa0042390:CDS 35.0%
GGCTAAATCAACTAATGCAA+GGG + chr1_1:73240203-73240222 None:intergenic 35.0%
AGGCTAAATCAACTAATGCA+AGG + chr1_1:73240204-73240223 None:intergenic 35.0%
ACCCTAAACCTGAAAACATT+AGG - chr1_1:73240409-73240428 Msa0042390:intron 35.0%
! CTCGTAAACCTAATGTTTTC+AGG + chr1_1:73240420-73240439 None:intergenic 35.0%
! AAAAGTTTTCCTGACAATGG+TGG + chr1_1:73240635-73240654 None:intergenic 35.0%
! TCAGGAAAACTTTTGATGCA+AGG - chr1_1:73240641-73240660 Msa0042390:intron 35.0%
AACGGTAGTATAAGAACTGA+TGG + chr1_1:73240679-73240698 None:intergenic 35.0%
ATCAGTTCTTATACTACCGT+TGG - chr1_1:73240678-73240697 Msa0042390:intron 35.0%
TCAGTTCTTATACTACCGTT+GGG - chr1_1:73240679-73240698 Msa0042390:intron 35.0%
TGTTGTTAAACTCACTTGTG+TGG + chr1_1:73240741-73240760 None:intergenic 35.0%
CACAAGTGAGTTTAACAACA+TGG - chr1_1:73240741-73240760 Msa0042390:intron 35.0%
! TACTTGACACGTTTTCAGTA+TGG - chr1_1:73240845-73240864 Msa0042390:intron 35.0%
! ACTTGACACGTTTTCAGTAT+GGG - chr1_1:73240846-73240865 Msa0042390:intron 35.0%
TCAGTATGGGATAAACTTGA+AGG - chr1_1:73240859-73240878 Msa0042390:intron 35.0%
CAGTATGGGATAAACTTGAA+GGG - chr1_1:73240860-73240879 Msa0042390:intron 35.0%
AGTATGGGATAAACTTGAAG+GGG - chr1_1:73240861-73240880 Msa0042390:intron 35.0%
TTCATTGAGACTTCATCTTC+AGG + chr1_1:73230585-73230604 None:intergenic 35.0%
TAGAACACTATCACCCATAT+AGG - chr1_1:73241278-73241297 Msa0042390:intron 35.0%
ACCATATTATCCGAAGAAGA+AGG + chr1_1:73241559-73241578 None:intergenic 35.0%
!! TGATAAGTTGGTGATGTGAT+CGG + chr1_1:73241691-73241710 None:intergenic 35.0%
! ACTTGGTATCCTAAGAGTAT+TGG - chr1_1:73233923-73233942 Msa0042390:intron 35.0%
TGCCCTTAATTCTCTTGTTA+CGG + chr1_1:73241974-73241993 None:intergenic 35.0%
! AAAAGTAGCATTTTGTACGG+TGG - chr1_1:73242101-73242120 Msa0042390:intron 35.0%
ATTCAAGGTCACAATCACAA+AGG - chr1_1:73242145-73242164 Msa0042390:intron 35.0%
AGGATTTAGTACAATCTACC+GGG + chr1_1:73242203-73242222 None:intergenic 35.0%
GTATTCTTGATATCCGTCTA+AGG + chr1_1:73242924-73242943 None:intergenic 35.0%
TGTACTCTAACAATTTGGCA+AGG - chr1_1:73243444-73243463 Msa0042390:intron 35.0%
TTACTCTAACAATTTGGCAG+AGG - chr1_1:73243628-73243647 Msa0042390:intron 35.0%
TACTCTAACAATTTGGCAGA+GGG - chr1_1:73243629-73243648 Msa0042390:intron 35.0%
! AAGAACCACGGTTGAAATTT+TGG + chr1_1:73243801-73243820 None:intergenic 35.0%
TGGTTAATCAATAGAAGAGC+AGG - chr1_1:73243998-73244017 Msa0042390:intron 35.0%
!! ATGTTGCTTGTCATGTTTTG+TGG + chr1_1:73244064-73244083 None:intergenic 35.0%
! GCTACTATTGTCATGTTTTG+TGG + chr1_1:73244091-73244110 None:intergenic 35.0%
AGCTTATGGATCTTAAGGAA+AGG - chr1_1:73244108-73244127 Msa0042390:intron 35.0%
! GACAGTTTAGGATTATTACC+AGG + chr1_1:73244147-73244166 None:intergenic 35.0%
!! CATTTCCAATCTCCTTGTTT+TGG - chr1_1:73244226-73244245 Msa0042390:intron 35.0%
TAGAAACCTTCACCAAAACA+AGG + chr1_1:73244241-73244260 None:intergenic 35.0%
CCATGTTATCTGATGAAGAA+AGG + chr1_1:73244309-73244328 None:intergenic 35.0%
CCTTTCTTCATCAGATAACA+TGG - chr1_1:73244306-73244325 Msa0042390:intron 35.0%
GCAACACTTTGCAATTAAGA+AGG - chr1_1:73244330-73244349 Msa0042390:intron 35.0%
! GATAACTAGGTTTTCTTTCC+CGG - chr1_1:73244783-73244802 Msa0042390:intron 35.0%
!! CTTACAAGTTTTATGAGTCC+GGG + chr1_1:73244804-73244823 None:intergenic 35.0%
AAAATTATACCGCGAGCTTT+CGG - chr1_1:73245195-73245214 Msa0042390:intron 35.0%
AAAAACTCCATCAACTCCTT+TGG + chr1_1:73238185-73238204 None:intergenic 35.0%
TGAAAATCCTGTCAATCCAA+AGG - chr1_1:73238261-73238280 Msa0042390:intron 35.0%
GAAAATACCTTTGGATTGAC+AGG + chr1_1:73245333-73245352 None:intergenic 35.0%
TATCTAAGTTTCTCTCCTTG+AGG + chr1_1:73238474-73238493 None:intergenic 35.0%
GGAGAGAAACTTAGATATCA+AGG - chr1_1:73238477-73238496 Msa0042390:intron 35.0%
! CCCAACACAAAAAGTATACA+AGG + chr1_1:73238515-73238534 None:intergenic 35.0%
!! GAAAGTGCAATTTTGAATGG+AGG - chr1_1:73238637-73238656 Msa0042390:intron 35.0%
AATTCTTAGACAACCAGTTG+AGG - chr1_1:73245822-73245841 Msa0042390:CDS 35.0%
AATCAATTAACGACCTCAAC+TGG + chr1_1:73245838-73245857 None:intergenic 35.0%
!! GCCTTTGAAATGTGTTCAAA+TGG + chr1_1:73245868-73245887 None:intergenic 35.0%
GAACATCTAATCCAAGGTAT+CGG - chr1_1:73245888-73245907 Msa0042390:intron 35.0%
TCTCCTAGATGAAGTTATTC+AGG - chr1_1:73238879-73238898 Msa0042390:intron 35.0%
CTACCTGAATAACTTCATCT+AGG + chr1_1:73228430-73228449 None:intergenic 35.0%
! TGAACTTTTGAACCGATACT+TGG - chr1_1:73246064-73246083 Msa0042390:intron 35.0%
GATTATGTGCAACCAAGTAT+CGG + chr1_1:73246079-73246098 None:intergenic 35.0%
! GACAAAGCTTTGTCAAGATT+TGG + chr1_1:73239225-73239244 None:intergenic 35.0%
TTGAGTTACATAGTGACATG+AGG - chr1_1:73246248-73246267 Msa0042390:intron 35.0%
!! ATACTAGCTCTGCAAATACA+AGG - chr1_1:73246328-73246347 Msa0042390:intron 35.0%
!! TACTAGCTCTGCAAATACAA+GGG - chr1_1:73246329-73246348 Msa0042390:intron 35.0%
!! TGCTTTGAAAGAAGGTTTAC+TGG - chr1_1:73239457-73239476 Msa0042390:intron 35.0%
! ATGTGAATGTCTTTTGCAGA+TGG - chr1_1:73239729-73239748 Msa0042390:intron 35.0%
! TGTGAATGTCTTTTGCAGAT+GGG - chr1_1:73239730-73239749 Msa0042390:intron 35.0%
TGGAGGGAAAATTGATGCTT+TGG - chr1_1:73227864-73227883 Msa0042390:three_prime_UTR 40.0%
!! AGGTGTTGGGAAGTTTCTTA+AGG - chr1_1:73227918-73227937 Msa0042390:three_prime_UTR 40.0%
GGAGAAAAACGCAGAGATTA+AGG - chr1_1:73227939-73227958 Msa0042390:three_prime_UTR 40.0%
!! TTATGTTGCTTTCCCCCTAT+AGG - chr1_1:73228019-73228038 Msa0042390:CDS 40.0%
TCTACACCATACACCTATAG+GGG + chr1_1:73228035-73228054 None:intergenic 40.0%
GTTCTACACCATACACCTAT+AGG + chr1_1:73228037-73228056 None:intergenic 40.0%
AAAGGCAATCATCGAATCCA+AGG - chr1_1:73228362-73228381 Msa0042390:intron 40.0%
AAGGCAATCATCGAATCCAA+GGG - chr1_1:73228363-73228382 Msa0042390:intron 40.0%
AATCATCGAATCCAAGGGAT+CGG - chr1_1:73228368-73228387 Msa0042390:intron 40.0%
AGAAGATCAACTTCCAGAAC+AGG + chr1_1:73228410-73228429 None:intergenic 40.0%
TGCCTTGAAAGAAGGTTTAC+TGG - chr1_1:73228798-73228817 Msa0042390:intron 40.0%
ATTATAAGGGGAAGGAAGGA+TGG + chr1_1:73228940-73228959 None:intergenic 40.0%
CATGATTATAAGGGGAAGGA+AGG + chr1_1:73228944-73228963 None:intergenic 40.0%
GGAACATGATTATAAGGGGA+AGG + chr1_1:73228948-73228967 None:intergenic 40.0%
GGGAGGAACATGATTATAAG+GGG + chr1_1:73228952-73228971 None:intergenic 40.0%
GGGGAGGAACATGATTATAA+GGG + chr1_1:73228953-73228972 None:intergenic 40.0%
GAAGCTAACATGATTGCTGA+TGG + chr1_1:73228992-73229011 None:intergenic 40.0%
! AGCAATCATGTTAGCTTCAC+CGG - chr1_1:73228994-73229013 Msa0042390:intron 40.0%
TTGCAGATGGGAATTTCATC+AGG - chr1_1:73229139-73229158 Msa0042390:intron 40.0%
CAGCTGCTGCAATTAAACTA+GGG - chr1_1:73229170-73229189 Msa0042390:intron 40.0%
TTATTAGGCGCAGACTTGTA+AGG - chr1_1:73229446-73229465 Msa0042390:intron 40.0%
GCTCTACATGTCATAACTTG+TGG - chr1_1:73229663-73229682 Msa0042390:intron 40.0%
AAGTAACCACACAAGTGAGT+TGG - chr1_1:73229952-73229971 Msa0042390:intron 40.0%
TGGAAGAACACACACTTGAA+GGG + chr1_1:73230101-73230120 None:intergenic 40.0%
ATGGAAGAACACACACTTGA+AGG + chr1_1:73230102-73230121 None:intergenic 40.0%
GGGGAACATATCTAGATGAA+TGG + chr1_1:73230121-73230140 None:intergenic 40.0%
AGCAATAACATGCAAGTGTG+TGG + chr1_1:73230165-73230184 None:intergenic 40.0%
GCATGTTATTGCTCCATCAA+CGG - chr1_1:73230172-73230191 Msa0042390:intron 40.0%
CATGTTATTGCTCCATCAAC+GGG - chr1_1:73230173-73230192 Msa0042390:intron 40.0%
ATACTACTGTTGGGTCAAGA+AGG - chr1_1:73230265-73230284 Msa0042390:intron 40.0%
TACTACTGTTGGGTCAAGAA+GGG - chr1_1:73230266-73230285 Msa0042390:intron 40.0%
!! ATCCAAGAGCATCCATACAA+GGG - chr1_1:73230311-73230330 Msa0042390:CDS 40.0%
AACATGGACAACAAGAAGTG+TGG - chr1_1:73230342-73230361 Msa0042390:intron 40.0%
! ACATGGACAACAAGAAGTGT+GGG - chr1_1:73230343-73230362 Msa0042390:intron 40.0%
GTGTTATGGGATAAGCTTGA+AGG - chr1_1:73230453-73230472 Msa0042390:intron 40.0%
GTTATGGGATAAGCTTGAAG+GGG - chr1_1:73230455-73230474 Msa0042390:intron 40.0%
! TGAAGGGGTGTATTAGACAA+AGG - chr1_1:73230470-73230489 Msa0042390:intron 40.0%
! GAAGGGGTGTATTAGACAAA+GGG - chr1_1:73230471-73230490 Msa0042390:intron 40.0%
!!! TTCGGTTCGGTTCAGTTTTT+TGG + chr1_1:73230728-73230747 None:intergenic 40.0%
CAATTCCGTTCAGTTCAGTT+TGG - chr1_1:73230799-73230818 Msa0042390:intron 40.0%
!!! CGGTTCGGTTCAAAACATTT+TGG - chr1_1:73230950-73230969 Msa0042390:intron 40.0%
TGTATATAGAGGTGGGCATA+TGG + chr1_1:73231070-73231089 None:intergenic 40.0%
!! GATGATGGAATGGACCATAT+GGG + chr1_1:73231275-73231294 None:intergenic 40.0%
!! AGATGATGGAATGGACCATA+TGG + chr1_1:73231276-73231295 None:intergenic 40.0%
! TTGCAGTTTTCACTTTGGGT+TGG + chr1_1:73231442-73231461 None:intergenic 40.0%
!! TGGTTCAGTTTGGTTTGGTT+AGG + chr1_1:73231673-73231692 None:intergenic 40.0%
CGATCCGATCCAAATATATG+CGG + chr1_1:73232071-73232090 None:intergenic 40.0%
CGCATATATTTGGATCGGAT+CGG - chr1_1:73232069-73232088 Msa0042390:intron 40.0%
!! TGCGATTTGGATCAGTTTTG+AGG + chr1_1:73232175-73232194 None:intergenic 40.0%
! ATTGTTGTTAGGGGTGATTG+CGG + chr1_1:73232198-73232217 None:intergenic 40.0%
CAATGGACCAGATTTGAGAA+GGG + chr1_1:73232720-73232739 None:intergenic 40.0%
TCAATGGACCAGATTTGAGA+AGG + chr1_1:73232721-73232740 None:intergenic 40.0%
TCACTTAAGATACCTTGCGA+GGG + chr1_1:73233067-73233086 None:intergenic 40.0%
ATCACTTAAGATACCTTGCG+AGG + chr1_1:73233068-73233087 None:intergenic 40.0%
AAAGACAGCTTTCGGATGTT+AGG - chr1_1:73233343-73233362 Msa0042390:intron 40.0%
! CTTTTGCAGGCTTTCTTCAT+CGG - chr1_1:73233610-73233629 Msa0042390:intron 40.0%
TCCTTCTTGATTGCAAACTG+TGG + chr1_1:73233647-73233666 None:intergenic 40.0%
CTATCTGGTCATACATCTAG+CGG + chr1_1:73234063-73234082 None:intergenic 40.0%
AGCGGTAGTTAACTACCATT+GGG + chr1_1:73234153-73234172 None:intergenic 40.0%
AAAACCCAAAATACCTCCAG+CGG + chr1_1:73234171-73234190 None:intergenic 40.0%
GATGAAGAAGAAGATTCCGA+TGG - chr1_1:73234820-73234839 Msa0042390:intron 40.0%
AACAACTGAAACTTGCGAAG+CGG + chr1_1:73234896-73234915 None:intergenic 40.0%
ATGGTGAATCCATCAATGAC+TGG + chr1_1:73234973-73234992 None:intergenic 40.0%
! GATGGATTCACCATCAAGAT+CGG - chr1_1:73234979-73234998 Msa0042390:intron 40.0%
AGGAATTTCACCGATCTTGA+TGG + chr1_1:73234992-73235011 None:intergenic 40.0%
! AGCACTCAGAACTTTGCTAT+TGG - chr1_1:73235036-73235055 Msa0042390:intron 40.0%
GTCTTCAGAAACTGTGAACT+CGG + chr1_1:73235148-73235167 None:intergenic 40.0%
! GATATCGTTTTCTCATGCTC+TGG - chr1_1:73235198-73235217 Msa0042390:intron 40.0%
!! AAGACAGAAGCGTCGTAAAT+AGG + chr1_1:73235225-73235244 None:intergenic 40.0%
AGTCAGGAATCAGTCAGTTT+CGG - chr1_1:73235275-73235294 Msa0042390:CDS 40.0%
GCTTTGATATCGATCGGTTA+TGG - chr1_1:73235413-73235432 Msa0042390:intron 40.0%
TTGATATCGATCGGTTATGG+TGG - chr1_1:73235416-73235435 Msa0042390:intron 40.0%
!!! TCGTTTTGGAGAAGCACATT+TGG - chr1_1:73235602-73235621 Msa0042390:intron 40.0%
!!! CGTTTTGGAGAAGCACATTT+GGG - chr1_1:73235603-73235622 Msa0042390:intron 40.0%
! CAGGATCCTCCTTTGAAAAT+TGG + chr1_1:73235644-73235663 None:intergenic 40.0%
!! GCTTTTGGGAAGAACGATTT+TGG - chr1_1:73235930-73235949 Msa0042390:intron 40.0%
GAATGGGTAAGGTTGTTAAG+AGG - chr1_1:73236059-73236078 Msa0042390:intron 40.0%
AATGAAGCCCAGTAATTTGG+AGG + chr1_1:73236159-73236178 None:intergenic 40.0%
GCTAATGAAGCCCAGTAATT+TGG + chr1_1:73236162-73236181 None:intergenic 40.0%
!!! TTCCCCATTTTGAGTTTGAG+GGG - chr1_1:73236289-73236308 Msa0042390:intron 40.0%
TGCAGTGTCAAAGATAGGTA+TGG - chr1_1:73237204-73237223 Msa0042390:intron 40.0%
!! CTTTATCGGCCGATTTTGTA+AGG + chr1_1:73237505-73237524 None:intergenic 40.0%
AAAATCGGCCGATAAAGTAG+AGG - chr1_1:73237508-73237527 Msa0042390:intron 40.0%
CTTCTTTCTCAAGCCTCAAT+GGG - chr1_1:73237905-73237924 Msa0042390:CDS 40.0%
TATCATATGCCTACCCATTG+AGG + chr1_1:73237921-73237940 None:intergenic 40.0%
AAGACTCACAAAAGATGGCA+TGG + chr1_1:73238107-73238126 None:intergenic 40.0%
CTCTCAAGACTCACAAAAGA+TGG + chr1_1:73238112-73238131 None:intergenic 40.0%
!! GAAAGTACCTTTGGATTGAC+AGG + chr1_1:73238271-73238290 None:intergenic 40.0%
TAGACTCATTATGAGACCAC+TGG - chr1_1:73238358-73238377 Msa0042390:intron 40.0%
CAGTGTCTCTCCAAATTTCA+GGG + chr1_1:73238384-73238403 None:intergenic 40.0%
AAATTTGGAGAGACACTGGA+GGG - chr1_1:73238386-73238405 Msa0042390:intron 40.0%
AGAATTGATGCTTTGGTTGC+AGG - chr1_1:73238409-73238428 Msa0042390:intron 40.0%
GAATTGATGCTTTGGTTGCA+GGG - chr1_1:73238410-73238429 Msa0042390:intron 40.0%
! ATTTTGAATGGAGGAAAGCC+AGG - chr1_1:73238646-73238665 Msa0042390:intron 40.0%
AAAGGCAAACACCTAATCCA+AGG - chr1_1:73238817-73238836 Msa0042390:intron 40.0%
AAGGCAAACACCTAATCCAA+GGG - chr1_1:73238818-73238837 Msa0042390:intron 40.0%
AAACACCTAATCCAAGGGAT+CGG - chr1_1:73238823-73238842 Msa0042390:intron 40.0%
GACACATTGAGCATGAAAGT+TGG - chr1_1:73239097-73239116 Msa0042390:intron 40.0%
!!! GGATTCTGTTTTGACCAACA+AGG - chr1_1:73239381-73239400 Msa0042390:intron 40.0%
!! AAGCTGCTTGCTTTGAAAGA+AGG - chr1_1:73239449-73239468 Msa0042390:intron 40.0%
TTGCAGATGGGAATTTCATC+AGG - chr1_1:73229139-73229158 Msa0042390:intron 40.0%
CAGCAGCAGCAATAAAACTA+GGG - chr1_1:73239773-73239792 Msa0042390:intron 40.0%
TTTCCAAATTGTTGTGCAGG+TGG - chr1_1:73239933-73239952 Msa0042390:intron 40.0%
AAACCACCTGCACAACAATT+TGG + chr1_1:73239939-73239958 None:intergenic 40.0%
! CAGGTGGTTTTTCCTAGTTT+TGG - chr1_1:73239949-73239968 Msa0042390:intron 40.0%
AAGTAACGCTCTCCAAAACT+AGG + chr1_1:73239964-73239983 None:intergenic 40.0%
GGGGAACATATCTAGATGAA+TGG + chr1_1:73230121-73230140 None:intergenic 40.0%
AGCAACAACATGCAAGTTTG+TGG + chr1_1:73240588-73240607 None:intergenic 40.0%
TTCTTATACTACCGTTGGGT+GGG - chr1_1:73240683-73240702 Msa0042390:intron 40.0%
! TGAAGGGGTGTATTAGACAA+AGG - chr1_1:73230470-73230489 Msa0042390:intron 40.0%
! GAAGGGGTGTATTAGACAAA+GGG - chr1_1:73230471-73230490 Msa0042390:intron 40.0%
ACACTATCACCCATATAGGT+AGG - chr1_1:73241282-73241301 Msa0042390:intron 40.0%
! CTACATACTCAAGCTTTTGC+AGG - chr1_1:73241533-73241552 Msa0042390:intron 40.0%
GCCTTCTTCTTCGGATAATA+TGG - chr1_1:73241555-73241574 Msa0042390:intron 40.0%
TCCTTCTTGATTGCAATCTG+TGG + chr1_1:73241583-73241602 None:intergenic 40.0%
CTATTAGTGCTTTGTCAACC+CGG - chr1_1:73242182-73242201 Msa0042390:intron 40.0%
! TACAAAAAATGCAGTGCCGA+TGG - chr1_1:73243141-73243160 Msa0042390:intron 40.0%
ACTCTAACAATTTGGCAGAG+GGG - chr1_1:73243630-73243649 Msa0042390:intron 40.0%
ATGAACAAGTGCAAGAACCA+CGG + chr1_1:73243813-73243832 None:intergenic 40.0%
AAAGGCAACCTGAAAATTCC+TGG - chr1_1:73244126-73244145 Msa0042390:intron 40.0%
TGCATGTCTTCTGACAGTTT+AGG + chr1_1:73244159-73244178 None:intergenic 40.0%
CAGAAGACATGCAACTGATT+AGG - chr1_1:73244166-73244185 Msa0042390:intron 40.0%
!! TAGGTGAAGTTGATTTGCCT+TGG - chr1_1:73244185-73244204 Msa0042390:intron 40.0%
CTTCACCAAAACAAGGAGAT+TGG + chr1_1:73244234-73244253 None:intergenic 40.0%
!!! CAATCTCCTTGTTTTGGTGA+AGG - chr1_1:73244232-73244251 Msa0042390:intron 40.0%
GTTAATAGGGAACACACCAT+TGG - chr1_1:73244478-73244497 Msa0042390:intron 40.0%
CTCTCAAGACTCACAAAAGA+TGG + chr1_1:73238112-73238131 None:intergenic 40.0%
TAGACTCATTATGAGACCAC+TGG - chr1_1:73238358-73238377 Msa0042390:intron 40.0%
AGAATTGATGCTTTGGTTGC+AGG - chr1_1:73238409-73238428 Msa0042390:intron 40.0%
GAATTGATGCTTTGGTTGCA+GGG - chr1_1:73238410-73238429 Msa0042390:intron 40.0%
! ATTTTGAATGGAGGAAAGCC+AGG - chr1_1:73238646-73238665 Msa0042390:intron 40.0%
AAAGGCGAACATCTAATCCA+AGG - chr1_1:73245882-73245901 Msa0042390:intron 40.0%
!! CTAATCCAAGGTATCGGTAA+TGG - chr1_1:73245894-73245913 Msa0042390:intron 40.0%
AGCTTGCAACACTAATACAC+TGG - chr1_1:73245968-73245987 Msa0042390:intron 40.0%
!!! GGATTCTGTTTTGACCAACA+AGG - chr1_1:73239381-73239400 Msa0042390:intron 40.0%
!! AAGCTGCTTGCTTTGAAAGA+AGG - chr1_1:73239449-73239468 Msa0042390:intron 40.0%
!! TGAGTAATGGATATGGCCAT+TGG - chr1_1:73246569-73246588 Msa0042390:intron 40.0%
TTGCAGATGGGAATTTCATC+AGG - chr1_1:73229139-73229158 Msa0042390:intron 40.0%
CAGCAGCTGCAATAAAACTA+GGG - chr1_1:73246762-73246781 Msa0042390:intron 40.0%
TGCGTCGAACAAACATACTA+AGG + chr1_1:73246834-73246853 None:intergenic 40.0%
ATTGCAAATCGTTGTTGTGC+AGG - chr1_1:73246952-73246971 Msa0042390:CDS 40.0%
! CAGGTGGTTTTTCCTAGTTT+TGG - chr1_1:73239949-73239968 Msa0042390:intron 40.0%
AAGTAACGCTCTCCAAAACT+AGG + chr1_1:73239964-73239983 None:intergenic 40.0%
!!! CACCACTTTTTGAATCCATC+AGG - chr1_1:73247011-73247030 Msa0042390:intron 40.0%
AGTCATTCTCATTCAAGCTG+TGG - chr1_1:73247088-73247107 Msa0042390:CDS 40.0%
CAGAGTCTCTCCAAATCTCA+GGG + chr1_1:73227846-73227865 None:intergenic 45.0%
AGATTTGGAGAGACTCTGGA+GGG - chr1_1:73227848-73227867 Msa0042390:three_prime_UTR 45.0%
GAGGAACAGTAACAGGTGTT+GGG - chr1_1:73227905-73227924 Msa0042390:three_prime_UTR 45.0%
CTACACCATACACCTATAGG+GGG + chr1_1:73228034-73228053 None:intergenic 45.0%
ACCAACTGAAAGTCCAGTTC+TGG - chr1_1:73228055-73228074 Msa0042390:intron 45.0%
TCCAGAACTGGACTTTCAGT+TGG + chr1_1:73228059-73228078 None:intergenic 45.0%
!! ACTGAAAGTCCAGTTCTGGA+TGG - chr1_1:73228059-73228078 Msa0042390:intron 45.0%
AGTCCTTGATCAACCACTTG+AGG - chr1_1:73228302-73228321 Msa0042390:intron 45.0%
TGGTATCATTCCTCCTGTTC+TGG - chr1_1:73228394-73228413 Msa0042390:intron 45.0%
AGATCAACTTCCAGAACAGG+AGG + chr1_1:73228407-73228426 None:intergenic 45.0%
AAGCTGCTTGCCTTGAAAGA+AGG - chr1_1:73228790-73228809 Msa0042390:intron 45.0%
GGGGGAGGAACATGATTATA+AGG + chr1_1:73228954-73228973 None:intergenic 45.0%
ATGGCGTGACAGTTAGTTAG+GGG + chr1_1:73228973-73228992 None:intergenic 45.0%
GATGGCGTGACAGTTAGTTA+GGG + chr1_1:73228974-73228993 None:intergenic 45.0%
! TGATGGCGTGACAGTTAGTT+AGG + chr1_1:73228975-73228994 None:intergenic 45.0%
GCAGCTGCTGCAATTAAACT+AGG - chr1_1:73229169-73229188 Msa0042390:intron 45.0%
GGGAAGAGACCAGAAAATGT+AGG - chr1_1:73229190-73229209 Msa0042390:intron 45.0%
! CAGGTGGTTTTTCCTAGTTC+TGG - chr1_1:73229543-73229562 Msa0042390:CDS 45.0%
AAGTAACGCTCTCCAGAACT+AGG + chr1_1:73229558-73229577 None:intergenic 45.0%
TTGTTCAGCTTCATGCCTGA+TGG + chr1_1:73229601-73229620 None:intergenic 45.0%
! TTTTGCGTTGTTCGGACATG+AGG - chr1_1:73229900-73229919 Msa0042390:intron 45.0%
TTTGCGTTGTTCGGACATGA+GGG - chr1_1:73229901-73229920 Msa0042390:intron 45.0%
TAGTGTCCAACTCACTTGTG+TGG + chr1_1:73229961-73229980 None:intergenic 45.0%
GGAAGAACACACACTTGAAG+GGG + chr1_1:73230100-73230119 None:intergenic 45.0%
GTCGTTTAGCCACCATTGTT+AGG - chr1_1:73230200-73230219 Msa0042390:intron 45.0%
ACTACTGTTGGGTCAAGAAG+GGG - chr1_1:73230267-73230286 Msa0042390:intron 45.0%
!! GATCCAAGAGCATCCATACA+AGG - chr1_1:73230310-73230329 Msa0042390:CDS 45.0%
TGTTGTCCAACTCCCTTGTA+TGG + chr1_1:73230326-73230345 None:intergenic 45.0%
TACAAGGGAGTTGGACAACA+TGG - chr1_1:73230326-73230345 Msa0042390:intron 45.0%
CCGAACCAAACTGAACTGAA+CGG + chr1_1:73230807-73230826 None:intergenic 45.0%
CCGTTCAGTTCAGTTTGGTT+CGG - chr1_1:73230804-73230823 Msa0042390:intron 45.0%
!! CAGTTTGGTTCGGAACAGTT+TGG - chr1_1:73230814-73230833 Msa0042390:intron 45.0%
! TGGTTCGGAACAGTTTGGTT+TGG - chr1_1:73230819-73230838 Msa0042390:intron 45.0%
CGGTTCAGTTCGAAACAGTT+CGG - chr1_1:73230930-73230949 Msa0042390:intron 45.0%
CAGTTCGAAACAGTTCGGTT+CGG - chr1_1:73230935-73230954 Msa0042390:intron 45.0%
ATAGAGGTGGGCATATGGTT+CGG + chr1_1:73231065-73231084 None:intergenic 45.0%
ATAGGAGAACAAGTCCCCTA+CGG - chr1_1:73231509-73231528 Msa0042390:intron 45.0%
ACATGCGGTTCGATTCAGTT+TGG + chr1_1:73232122-73232141 None:intergenic 45.0%
GAATAAAGCTCTCTCACGAC+AGG - chr1_1:73232767-73232786 Msa0042390:intron 45.0%
CGGTTAAGCTGAAACTGTTC+TGG - chr1_1:73233424-73233443 Msa0042390:intron 45.0%
GCCACAGTTTGCAATCAAGA+AGG - chr1_1:73233643-73233662 Msa0042390:intron 45.0%
CGGTAGTTAACTACCATTGG+GGG + chr1_1:73234151-73234170 None:intergenic 45.0%
GCGGTAGTTAACTACCATTG+GGG + chr1_1:73234152-73234171 None:intergenic 45.0%
CAGCGGTAGTTAACTACCAT+TGG + chr1_1:73234154-73234173 None:intergenic 45.0%
CAATGGTAGTTAACTACCGC+TGG - chr1_1:73234152-73234171 Msa0042390:intron 45.0%
!!! AACTACCGCTGGAGGTATTT+TGG - chr1_1:73234163-73234182 Msa0042390:intron 45.0%
!!! ACTACCGCTGGAGGTATTTT+GGG - chr1_1:73234164-73234183 Msa0042390:intron 45.0%
AGAACACAAGGTTGCTGATG+CGG + chr1_1:73234872-73234891 None:intergenic 45.0%
TCAATGACTGGTGTGATCCA+TGG + chr1_1:73234961-73234980 None:intergenic 45.0%
TGGATCACACCAGTCATTGA+TGG - chr1_1:73234961-73234980 Msa0042390:intron 45.0%
AAACTGTGAACTCGGATTCG+CGG + chr1_1:73235140-73235159 None:intergenic 45.0%
TTCTGTCTTCGTCGGAAAAC+AGG - chr1_1:73235236-73235255 Msa0042390:CDS 45.0%
AACACGCTGTAATCACAGTC+AGG - chr1_1:73235259-73235278 Msa0042390:CDS 45.0%
! GCACAGGCTTTGATATCGAT+CGG - chr1_1:73235407-73235426 Msa0042390:intron 45.0%
!! ATCGGTTATGGTGGATACCA+TGG - chr1_1:73235425-73235444 Msa0042390:intron 45.0%
!! TCGGTTATGGTGGATACCAT+GGG - chr1_1:73235426-73235445 Msa0042390:intron 45.0%
TTGGGCATCCTCCAAATTAC+TGG - chr1_1:73236148-73236167 Msa0042390:intron 45.0%
TGGGCATCCTCCAAATTACT+GGG - chr1_1:73236149-73236168 Msa0042390:intron 45.0%
!!! TCCCCATTTTGAGTTTGAGG+GGG - chr1_1:73236290-73236309 Msa0042390:intron 45.0%
TCCCCCCTCAAACTCAAAAT+GGG + chr1_1:73236295-73236314 None:intergenic 45.0%
ATTGGTTAAAGCCACAACGG+AGG - chr1_1:73236893-73236912 Msa0042390:intron 45.0%
TTGGTTAAAGCCACAACGGA+GGG - chr1_1:73236894-73236913 Msa0042390:intron 45.0%
GTTAACAGGGAACACACCAT+TGG - chr1_1:73237110-73237129 Msa0042390:intron 45.0%
CTTGCTGCAGTGTCAAAGAT+AGG - chr1_1:73237199-73237218 Msa0042390:intron 45.0%
TGGCTTCATTACTCCTGGAA+AGG - chr1_1:73237367-73237386 Msa0042390:intron 45.0%
GCACCCATCCTCTACTTTAT+CGG + chr1_1:73237519-73237538 None:intergenic 45.0%
AGATTAGAGGTCGGAGTAGT+GGG + chr1_1:73237600-73237619 None:intergenic 45.0%
TAGATTAGAGGTCGGAGTAG+TGG + chr1_1:73237601-73237620 None:intergenic 45.0%
TGAGGCTTGAGAAAGAAGGA+TGG + chr1_1:73237903-73237922 None:intergenic 45.0%
CCATTGAGGCTTGAGAAAGA+AGG + chr1_1:73237907-73237926 None:intergenic 45.0%
CCTTCTTTCTCAAGCCTCAA+TGG - chr1_1:73237904-73237923 Msa0042390:CDS 45.0%
TTTCTCAAGCCTCAATGGGT+AGG - chr1_1:73237909-73237928 Msa0042390:CDS 45.0%
GTTCTTGTTGAGGCTACTAG+TGG - chr1_1:73238022-73238041 Msa0042390:intron 45.0%
AGGGTCTGTCAGATATACCT+CGG + chr1_1:73238161-73238180 None:intergenic 45.0%
CCAGTGTCTCTCCAAATTTC+AGG + chr1_1:73238385-73238404 None:intergenic 45.0%
CCTGAAATTTGGAGAGACAC+TGG - chr1_1:73238382-73238401 Msa0042390:intron 45.0%
GAAATTTGGAGAGACACTGG+AGG - chr1_1:73238385-73238404 Msa0042390:intron 45.0%
TGGAGGGAGAATTGATGCTT+TGG - chr1_1:73238402-73238421 Msa0042390:intron 45.0%
CTATGTAAATTTCCCCCCCT+AGG - chr1_1:73238594-73238613 Msa0042390:intron 45.0%
TTCTACACCATACACCTAGG+GGG + chr1_1:73238611-73238630 None:intergenic 45.0%
GTTCTACACCATACACCTAG+GGG + chr1_1:73238612-73238631 None:intergenic 45.0%
GGTTCTACACCATACACCTA+GGG + chr1_1:73228038-73228057 None:intergenic 45.0%
! TGGTTCTACACCATACACCT+AGG + chr1_1:73228039-73228058 None:intergenic 45.0%
CATCTAGGAGATCAAGATCC+AGG + chr1_1:73238870-73238889 None:intergenic 45.0%
! TGACAAAGCTTTGTCTCACC+AGG - chr1_1:73239230-73239249 Msa0042390:intron 45.0%
GCAGCAGCAGCAATAAAACT+AGG - chr1_1:73239772-73239791 Msa0042390:intron 45.0%
GGGAAGAGACAAGAAAATGC+AGG - chr1_1:73239793-73239812 Msa0042390:intron 45.0%
TTGTTCAGCTTCATGCCTGA+TGG + chr1_1:73229601-73229620 None:intergenic 45.0%
! TTTTGCGTTGTTCGGACATG+AGG - chr1_1:73229900-73229919 Msa0042390:intron 45.0%
GGAAGAACACACACTTGAAG+AGG + chr1_1:73230100-73230119 None:intergenic 45.0%
GCATGTTGTTGCTCCATCAA+CGG - chr1_1:73240595-73240614 Msa0042390:intron 45.0%
CATGTTGTTGCTCCATCAAC+GGG - chr1_1:73240596-73240615 Msa0042390:intron 45.0%
GTTCTTATACTACCGTTGGG+TGG - chr1_1:73240682-73240701 Msa0042390:intron 45.0%
GATCTTCAAATCCCACCCAA+CGG + chr1_1:73240697-73240716 None:intergenic 45.0%
ACACACACACACACACACAT+AGG + chr1_1:73241440-73241459 None:intergenic 45.0%
! CTTTTGCAGGCCTTCTTCTT+CGG - chr1_1:73241546-73241565 Msa0042390:intron 45.0%
GCCACAGATTGCAATCAAGA+AGG - chr1_1:73241579-73241598 Msa0042390:intron 45.0%
CGGTACTTCAGCTACATGTT+AGG + chr1_1:73242223-73242242 None:intergenic 45.0%
CCTATCTTTGATACTGCAGC+AGG + chr1_1:73244570-73244589 None:intergenic 45.0%
CCTGCTGCAGTATCAAAGAT+AGG - chr1_1:73244567-73244586 Msa0042390:intron 45.0%
AGGTCTCATTACTCCTGCAA+AGG - chr1_1:73244737-73244756 Msa0042390:intron 45.0%
GACTGTTCTTGTTGAGGCTA+CGG - chr1_1:73245080-73245099 Msa0042390:intron 45.0%
ACTGTTCTTGTTGAGGCTAC+GGG - chr1_1:73245081-73245100 Msa0042390:intron 45.0%
AGGGTCTGTCAGATATACCT+CGG + chr1_1:73238161-73238180 None:intergenic 45.0%
CAGTGTCTCTCCAAATCTCA+GGG + chr1_1:73245446-73245465 None:intergenic 45.0%
AGATTTGGAGAGACACTGGA+GGG - chr1_1:73245448-73245467 Msa0042390:intron 45.0%
TGGAGGGAGAATTGATGCTT+TGG - chr1_1:73238402-73238421 Msa0042390:intron 45.0%
CTATGTAAATTTCCCCCCCT+AGG - chr1_1:73238594-73238613 Msa0042390:intron 45.0%
TTCTACACCATACACCTAGG+GGG + chr1_1:73238611-73238630 None:intergenic 45.0%
GTTCTACACCATACACCTAG+GGG + chr1_1:73238612-73238631 None:intergenic 45.0%
GGTTCTACACCATACACCTA+GGG + chr1_1:73228038-73228057 None:intergenic 45.0%
! TGGTTCTACACCATACACCT+AGG + chr1_1:73228039-73228058 None:intergenic 45.0%
CATCTAGGAGATCAAGATCC+AGG + chr1_1:73238870-73238889 None:intergenic 45.0%
! TGACAAAGCTTTGTCTCACC+AGG - chr1_1:73239230-73239249 Msa0042390:intron 45.0%
GCAGCAGCTGCAATAAAACT+AGG - chr1_1:73246761-73246780 Msa0042390:intron 45.0%
GGGAAGAGACAAGAAAATGC+AGG - chr1_1:73239793-73239812 Msa0042390:intron 45.0%
!! CGCCTGATGGATTCAAAAAG+TGG + chr1_1:73247016-73247035 None:intergenic 45.0%
!! ATAAACTAATAAATATAATA+AGG - chr1_1:73229378-73229397 Msa0042390:intron 5.0%
!!! TTTATATATATATTTTTCAA+TGG - chr1_1:73230890-73230909 Msa0042390:intron 5.0%
!!! ATTATAAATATTTAGATTTT+TGG + chr1_1:73231693-73231712 None:intergenic 5.0%
!!! AAAAAATATATTTTACATTT+TGG - chr1_1:73232018-73232037 Msa0042390:intron 5.0%
!! AAATAATAAAAATCATATAA+TGG - chr1_1:73232329-73232348 Msa0042390:intron 5.0%
!!! ATTATTTTTATTTTTTTGAA+AGG + chr1_1:73236596-73236615 None:intergenic 5.0%
!!! AAATAGAATTTTTAAAAAAT+CGG + chr1_1:73240296-73240315 None:intergenic 5.0%
!!! ATTTGAAATTAAAAAAAATT+AGG - chr1_1:73243045-73243064 Msa0042390:intron 5.0%
!!! TTTGAAATTAAAAAAAATTA+GGG - chr1_1:73243046-73243065 Msa0042390:intron 5.0%
CCAGAGTCTCTCCAAATCTC+AGG + chr1_1:73227847-73227866 None:intergenic 50.0%
CCTGAGATTTGGAGAGACTC+TGG - chr1_1:73227844-73227863 Msa0042390:three_prime_UTR 50.0%
GAGATTTGGAGAGACTCTGG+AGG - chr1_1:73227847-73227866 Msa0042390:three_prime_UTR 50.0%
GATGCTTTGGTTGCAGGGAT+AGG - chr1_1:73227877-73227896 Msa0042390:three_prime_UTR 50.0%
TTGGTTGCAGGGATAGGAAC+TGG - chr1_1:73227883-73227902 Msa0042390:three_prime_UTR 50.0%
GGAACTGGAGGAACAGTAAC+AGG - chr1_1:73227898-73227917 Msa0042390:three_prime_UTR 50.0%
GGAGGAACAGTAACAGGTGT+TGG - chr1_1:73227904-73227923 Msa0042390:three_prime_UTR 50.0%
GCTTTCCCCCTATAGGTGTA+TGG - chr1_1:73228026-73228045 Msa0042390:CDS 50.0%
!! GAAAGTCCAGTTCTGGATGG+AGG - chr1_1:73228062-73228081 Msa0042390:intron 50.0%
GACTTTCCTCCATCCAGAAC+TGG + chr1_1:73228071-73228090 None:intergenic 50.0%
! GTTCTGGATGGAGGAAAGTC+AGG - chr1_1:73228071-73228090 Msa0042390:intron 50.0%
CAGCCTCAAGTGGTTGATCA+AGG + chr1_1:73228308-73228327 None:intergenic 50.0%
ATAAGGGGAAGGAAGGATGG+TGG + chr1_1:73228937-73228956 None:intergenic 50.0%
TGGCGTGACAGTTAGTTAGG+GGG + chr1_1:73228972-73228991 None:intergenic 50.0%
TTGCGTTGTTCGGACATGAG+GGG - chr1_1:73229902-73229921 Msa0042390:intron 50.0%
TAAACGACGTGTCCCGTTGA+TGG + chr1_1:73230188-73230207 None:intergenic 50.0%
CTACTGTTGGGTCAAGAAGG+GGG - chr1_1:73230268-73230287 Msa0042390:intron 50.0%
CTCCCTTGTATGGATGCTCT+TGG + chr1_1:73230316-73230335 None:intergenic 50.0%
GAGCATCCATACAAGGGAGT+TGG - chr1_1:73230317-73230336 Msa0042390:CDS 50.0%
TTCTCCTATCCCACGGTAGA+AGG + chr1_1:73231498-73231517 None:intergenic 50.0%
! GGACTTGTTCTCCTATCCCA+CGG + chr1_1:73231505-73231524 None:intergenic 50.0%
TGGTGGTAGCAAGTTAGTGC+AGG - chr1_1:73231551-73231570 Msa0042390:intron 50.0%
CTTAAGATACCTTGCGAGGG+CGG + chr1_1:73233064-73233083 None:intergenic 50.0%
GTCACACACACACACACACA+CGG - chr1_1:73233404-73233423 Msa0042390:intron 50.0%
TGGTAGTTAACTACCGCTGG+AGG - chr1_1:73234155-73234174 Msa0042390:intron 50.0%
TTGCGAAGCGGAAGAACACA+AGG + chr1_1:73234884-73234903 None:intergenic 50.0%
CTAATCCTCCTCCTTCACCA+TGG - chr1_1:73234941-73234960 Msa0042390:intron 50.0%
ACTGGTGTGATCCATGGTGA+AGG + chr1_1:73234955-73234974 None:intergenic 50.0%
TACGACGCTTCTGTCTTCGT+CGG - chr1_1:73235228-73235247 Msa0042390:CDS 50.0%
ATTTCCGTCGGGATCGAAGT+CGG + chr1_1:73235329-73235348 None:intergenic 50.0%
GAACCACAGAGATTTCCGTC+GGG + chr1_1:73235340-73235359 None:intergenic 50.0%
CGAACCACAGAGATTTCCGT+CGG + chr1_1:73235341-73235360 None:intergenic 50.0%
CAGATTCTTTCCTCTGCCCA+TGG + chr1_1:73235445-73235464 None:intergenic 50.0%
CCCCCCTCAAACTCAAAATG+GGG + chr1_1:73236294-73236313 None:intergenic 50.0%
!!! CCCCATTTTGAGTTTGAGGG+GGG - chr1_1:73236291-73236310 Msa0042390:intron 50.0%
GTCCCCCCTCAAACTCAAAA+TGG + chr1_1:73236296-73236315 None:intergenic 50.0%
TCGGCCGATAAAGTAGAGGA+TGG - chr1_1:73237512-73237531 Msa0042390:intron 50.0%
CGGCCGATAAAGTAGAGGAT+GGG - chr1_1:73237513-73237532 Msa0042390:intron 50.0%
GATCGATGCCAATCCTATGC+CGG + chr1_1:73238053-73238072 None:intergenic 50.0%
TATCTGACAGACCCTGCCAA+AGG - chr1_1:73238166-73238185 Msa0042390:intron 50.0%
CTCCATCAACTCCTTTGGCA+GGG + chr1_1:73238180-73238199 None:intergenic 50.0%
ACTCCATCAACTCCTTTGGC+AGG + chr1_1:73238181-73238200 None:intergenic 50.0%
AGACCACTGGCCCTGAAATT+TGG - chr1_1:73238371-73238390 Msa0042390:intron 50.0%
TCTCCAAATTTCAGGGCCAG+TGG + chr1_1:73238377-73238396 None:intergenic 50.0%
GATGCTTTGGTTGCAGGGAT+AGG - chr1_1:73227877-73227896 Msa0042390:three_prime_UTR 50.0%
TTGGTTGCAGGGATAGGAAC+TGG - chr1_1:73227883-73227902 Msa0042390:three_prime_UTR 50.0%
TGGTTGCAGGGATAGGAACT+GGG - chr1_1:73227884-73227903 Msa0042390:three_prime_UTR 50.0%
GGAACTGGGGGAACAATAAC+AGG - chr1_1:73238436-73238455 Msa0042390:intron 50.0%
GGGGAACAATAACAGGTGCT+GGG - chr1_1:73238443-73238462 Msa0042390:intron 50.0%
AATTTCCCCCCCTAGGTGTA+TGG - chr1_1:73238601-73238620 Msa0042390:intron 50.0%
TCTACACCATACACCTAGGG+GGG + chr1_1:73238610-73238629 None:intergenic 50.0%
!! CAGTACCGATCCCTTGGATT+AGG + chr1_1:73238831-73238850 None:intergenic 50.0%
CTAATCCAAGGGATCGGTAC+TGG - chr1_1:73238829-73238848 Msa0042390:intron 50.0%
AGATCAAGATCCAGGACAGG+GGG + chr1_1:73238862-73238881 None:intergenic 50.0%
GAGATCAAGATCCAGGACAG+GGG + chr1_1:73238863-73238882 None:intergenic 50.0%
GGAGATCAAGATCCAGGACA+GGG + chr1_1:73238864-73238883 None:intergenic 50.0%
AGGAGATCAAGATCCAGGAC+AGG + chr1_1:73238865-73238884 None:intergenic 50.0%
TAAACGACGTGTCCCGTTGA+TGG + chr1_1:73230188-73230207 None:intergenic 50.0%
GTCGTTTAGCCACCATTGTC+AGG - chr1_1:73240623-73240642 Msa0042390:intron 50.0%
TGAGCTTAGCTCAGTTGGCA+AGG + chr1_1:73242468-73242487 None:intergenic 50.0%
TGCCAACTGAGCTAAGCTCA+CGG - chr1_1:73242468-73242487 Msa0042390:intron 50.0%
GATCGATGCCAATCCTATGC+CGG + chr1_1:73238053-73238072 None:intergenic 50.0%
TATCTGACAGACCCTGCCAA+AGG - chr1_1:73238166-73238185 Msa0042390:intron 50.0%
CTCCATCAACTCCTTTGGCA+GGG + chr1_1:73238180-73238199 None:intergenic 50.0%
ACTCCATCAACTCCTTTGGC+AGG + chr1_1:73238181-73238200 None:intergenic 50.0%
CCAGTGTCTCTCCAAATCTC+AGG + chr1_1:73245447-73245466 None:intergenic 50.0%
CCTGAGATTTGGAGAGACAC+TGG - chr1_1:73245444-73245463 Msa0042390:intron 50.0%
GAGATTTGGAGAGACACTGG+AGG - chr1_1:73245447-73245466 Msa0042390:intron 50.0%
GATGCTTTGGTTGCAGGGAT+AGG - chr1_1:73227877-73227896 Msa0042390:three_prime_UTR 50.0%
TTGGTTGCAGGGATAGGAAC+TGG - chr1_1:73227883-73227902 Msa0042390:three_prime_UTR 50.0%
TGGTTGCAGGGATAGGAACT+GGG - chr1_1:73227884-73227903 Msa0042390:three_prime_UTR 50.0%
GGAACTGGGGGAACAATAAC+AGG - chr1_1:73238436-73238455 Msa0042390:intron 50.0%
GGGGAACAATAACAGGTGCT+GGG - chr1_1:73238443-73238462 Msa0042390:intron 50.0%
AATTTCCCCCCCTAGGTGTA+TGG - chr1_1:73238601-73238620 Msa0042390:intron 50.0%
TCTACACCATACACCTAGGG+GGG + chr1_1:73238610-73238629 None:intergenic 50.0%
CGACACCATTACCGATACCT+TGG + chr1_1:73245902-73245921 None:intergenic 50.0%
AGATCAAGATCCAGGACAGG+GGG + chr1_1:73238862-73238881 None:intergenic 50.0%
GAGATCAAGATCCAGGACAG+GGG + chr1_1:73238863-73238882 None:intergenic 50.0%
GGAGATCAAGATCCAGGACA+GGG + chr1_1:73238864-73238883 None:intergenic 50.0%
AGGAGATCAAGATCCAGGAC+AGG + chr1_1:73238865-73238884 None:intergenic 50.0%
GCAAATCGTTGTTGTGCAGG+TGG - chr1_1:73246955-73246974 Msa0042390:CDS 50.0%
TTCTTCAGCTTCACGCCTGA+TGG + chr1_1:73247029-73247048 None:intergenic 50.0%
AGACCACTGGCCCTGAGATT+TGG - chr1_1:73227833-73227852 Msa0042390:three_prime_UTR 55.0%
TCTCCAAATCTCAGGGCCAG+TGG + chr1_1:73227839-73227858 None:intergenic 55.0%
GTTGCAGGGATAGGAACTGG+AGG - chr1_1:73227886-73227905 Msa0042390:three_prime_UTR 55.0%
!! TGATACCAGCACCGATCCCT+TGG + chr1_1:73228382-73228401 None:intergenic 55.0%
CGTGACAGTTAGTTAGGGGG+AGG + chr1_1:73228969-73228988 None:intergenic 55.0%
TGCGTTGTTCGGACATGAGG+GGG - chr1_1:73229903-73229922 Msa0042390:intron 55.0%
!! GTGGGCATATGGTTCGGTTC+GGG + chr1_1:73231059-73231078 None:intergenic 55.0%
!! GGTGGGCATATGGTTCGGTT+CGG + chr1_1:73231060-73231079 None:intergenic 55.0%
!! AACAAAGGCGCCTTCTACCG+TGG - chr1_1:73231485-73231504 Msa0042390:intron 55.0%
!! ACAAAGGCGCCTTCTACCGT+GGG - chr1_1:73231486-73231505 Msa0042390:intron 55.0%
TTGCTCTCTCACCGAAGCCT+TGG - chr1_1:73232799-73232818 Msa0042390:intron 55.0%
GCGAGGGCGGACATATGTAT+TGG + chr1_1:73233051-73233070 None:intergenic 55.0%
TACATATGTCCGCCCTCGCA+AGG - chr1_1:73233052-73233071 Msa0042390:intron 55.0%
GTGATCCATGGTGAAGGAGG+AGG + chr1_1:73234949-73234968 None:intergenic 55.0%
GGTGTGATCCATGGTGAAGG+AGG + chr1_1:73234952-73234971 None:intergenic 55.0%
GATCCCGACGGAAATCTCTG+TGG - chr1_1:73235334-73235353 Msa0042390:intron 55.0%
!! ATGGTGGATACCATGGGCAG+AGG - chr1_1:73235432-73235451 Msa0042390:intron 55.0%
GTTAAAGCCACAACGGAGGG+AGG - chr1_1:73236897-73236916 Msa0042390:intron 55.0%
TTCAACTCCTCCCTCCGTTG+TGG + chr1_1:73236907-73236926 None:intergenic 55.0%
GAGGCTACTAGTGGCAACAC+CGG - chr1_1:73238031-73238050 Msa0042390:intron 55.0%
ACTAGTGGCAACACCGGCAT+AGG - chr1_1:73238037-73238056 Msa0042390:intron 55.0%
TGGCAACACCGGCATAGGAT+TGG - chr1_1:73238042-73238061 Msa0042390:intron 55.0%
GACCCTGCCAAAGGAGTTGA+TGG - chr1_1:73238175-73238194 Msa0042390:intron 55.0%
GGTTGCAGGGATAGGAACTG+GGG - chr1_1:73227885-73227904 Msa0042390:three_prime_UTR 55.0%
GTTGCAGGGATAGGAACTGG+GGG - chr1_1:73227886-73227905 Msa0042390:three_prime_UTR 55.0%
GGGGGAACAATAACAGGTGC+TGG - chr1_1:73238442-73238461 Msa0042390:intron 55.0%
!! AGGTGCTGGGAAGTTCCTCA+AGG - chr1_1:73238456-73238475 Msa0042390:intron 55.0%
CTACACCATACACCTAGGGG+GGG + chr1_1:73238609-73238628 None:intergenic 55.0%
TGGATATGCATCGGGGCCAT+TGG - chr1_1:73239596-73239615 Msa0042390:intron 55.0%
TGCGTTGTTCGGACATGAGG+TGG - chr1_1:73229903-73229922 Msa0042390:intron 55.0%
CAAAGTCTGGGTTCGAACCC+CGG + chr1_1:73242429-73242448 None:intergenic 55.0%
CTCCGTGAGCTTAGCTCAGT+TGG + chr1_1:73242473-73242492 None:intergenic 55.0%
GTTCTTGTTGAGGCTACGGG+TGG - chr1_1:73245084-73245103 Msa0042390:intron 55.0%
TGGCAACACCGGCATAGGAT+TGG - chr1_1:73238042-73238061 Msa0042390:intron 55.0%
GACCCTGCCAAAGGAGTTGA+TGG - chr1_1:73238175-73238194 Msa0042390:intron 55.0%
AGACCACTGGCCCTGAGATT+TGG - chr1_1:73227833-73227852 Msa0042390:three_prime_UTR 55.0%
TCTCCAAATCTCAGGGCCAG+TGG + chr1_1:73227839-73227858 None:intergenic 55.0%
GGTTGCAGGGATAGGAACTG+GGG - chr1_1:73227885-73227904 Msa0042390:three_prime_UTR 55.0%
GTTGCAGGGATAGGAACTGG+GGG - chr1_1:73227886-73227905 Msa0042390:three_prime_UTR 55.0%
GGGGGAACAATAACAGGTGC+TGG - chr1_1:73238442-73238461 Msa0042390:intron 55.0%
!! AGGTGCTGGGAAGTTCCTCA+AGG - chr1_1:73238456-73238475 Msa0042390:intron 55.0%
CTACACCATACACCTAGGGG+GGG + chr1_1:73238609-73238628 None:intergenic 55.0%
CGAATCCAAGGGATCGGTGC+TGG - chr1_1:73228374-73228393 Msa0042390:intron 60.0%
CGGACATGAGGGGGTTTGAG+AGG - chr1_1:73229912-73229931 Msa0042390:intron 60.0%
GTTGGGTCAAGAAGGGGGCA+TGG - chr1_1:73230273-73230292 Msa0042390:intron 60.0%
GGGGTGATTGCGGTGCGATT+TGG + chr1_1:73232188-73232207 None:intergenic 60.0%
!! ATCGCCGACTTCGATCCCGA+CGG - chr1_1:73235322-73235341 Msa0042390:intron 60.0%
! GCATCGATCGCAGCACTGAG+AGG - chr1_1:73238064-73238083 Msa0042390:intron 60.0%
!! CGACACCAGTACCGATCCCT+TGG + chr1_1:73238837-73238856 None:intergenic 60.0%
CGGACATGAGGTGGTCTGAG+AGG - chr1_1:73240334-73240353 Msa0042390:intron 60.0%
! GCATCGATCGCAGCACTGAG+AGG - chr1_1:73238064-73238083 Msa0042390:intron 60.0%
GGCGCCTTCTACCGTGGGAT+AGG - chr1_1:73231491-73231510 Msa0042390:intron 65.0%
!!! ACTGCGCGCTTTTGGAGCCG+AGG - chr1_1:73238141-73238160 Msa0042390:intron 65.0%
!! TGGTGTCGTTCCCCCTGTCC+TGG - chr1_1:73238849-73238868 Msa0042390:intron 65.0%
GAGGCTACGGGTGGCAACAC+CGG - chr1_1:73245093-73245112 Msa0042390:intron 65.0%
ACGGGTGGCAACACCGGCAT+AGG - chr1_1:73245099-73245118 Msa0042390:intron 65.0%
ACCTCGGCTCCGAAAGCTCG+CGG + chr1_1:73245207-73245226 None:intergenic 65.0%
!! TGGTGTCGTTCCCCCTGTCC+TGG - chr1_1:73238849-73238868 Msa0042390:intron 65.0%
ACCGCGAGCTTTCGGAGCCG+AGG - chr1_1:73245203-73245222 Msa0042390:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73227823 73247220 73227823 ID=Msa0042390;Name=Msa0042390
chr1_1 mRNA 73227823 73247220 73227823 ID=Msa0042390-mRNA-1;Parent=Msa0042390;Name=Msa0042390-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.38|0.57|0.94|0.77|0.89|19|157|490
chr1_1 exon 73227823 73228069 73227823 ID=Msa0042390-mRNA-1:exon:24517;Parent=Msa0042390-mRNA-1
chr1_1 exon 73228226 73228306 73228226 ID=Msa0042390-mRNA-1:exon:24516;Parent=Msa0042390-mRNA-1
chr1_1 exon 73229078 73229157 73229078 ID=Msa0042390-mRNA-1:exon:24515;Parent=Msa0042390-mRNA-1
chr1_1 exon 73229314 73229365 73229314 ID=Msa0042390-mRNA-1:exon:24514;Parent=Msa0042390-mRNA-1
chr1_1 exon 73229483 73229620 73229483 ID=Msa0042390-mRNA-1:exon:24513;Parent=Msa0042390-mRNA-1
chr1_1 exon 73230285 73230342 73230285 ID=Msa0042390-mRNA-1:exon:24512;Parent=Msa0042390-mRNA-1
chr1_1 exon 73230518 73230564 73230518 ID=Msa0042390-mRNA-1:exon:24511;Parent=Msa0042390-mRNA-1
chr1_1 exon 73230680 73230737 73230680 ID=Msa0042390-mRNA-1:exon:24510;Parent=Msa0042390-mRNA-1
chr1_1 exon 73231024 73231031 73231024 ID=Msa0042390-mRNA-1:exon:24509;Parent=Msa0042390-mRNA-1
chr1_1 exon 73235215 73235295 73235215 ID=Msa0042390-mRNA-1:exon:24508;Parent=Msa0042390-mRNA-1
chr1_1 exon 73236152 73236222 73236152 ID=Msa0042390-mRNA-1:exon:24507;Parent=Msa0042390-mRNA-1
chr1_1 exon 73236376 73236427 73236376 ID=Msa0042390-mRNA-1:exon:24506;Parent=Msa0042390-mRNA-1
chr1_1 exon 73236545 73236682 73236545 ID=Msa0042390-mRNA-1:exon:24505;Parent=Msa0042390-mRNA-1
chr1_1 exon 73237655 73237712 73237655 ID=Msa0042390-mRNA-1:exon:24504;Parent=Msa0042390-mRNA-1
chr1_1 exon 73237823 73237932 73237823 ID=Msa0042390-mRNA-1:exon:24503;Parent=Msa0042390-mRNA-1
chr1_1 exon 73245818 73245898 73245818 ID=Msa0042390-mRNA-1:exon:24502;Parent=Msa0042390-mRNA-1
chr1_1 exon 73246598 73246677 73246598 ID=Msa0042390-mRNA-1:exon:24501;Parent=Msa0042390-mRNA-1
chr1_1 exon 73246951 73247002 73246951 ID=Msa0042390-mRNA-1:exon:24500;Parent=Msa0042390-mRNA-1
chr1_1 exon 73247083 73247220 73247083 ID=Msa0042390-mRNA-1:exon:24499;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73247083 73247220 73247083 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73246951 73247002 73246951 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73246598 73246677 73246598 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73245818 73245898 73245818 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73237823 73237932 73237823 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73237655 73237712 73237655 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73236545 73236682 73236545 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73236376 73236427 73236376 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73236152 73236222 73236152 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73235215 73235295 73235215 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73231024 73231031 73231024 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73230680 73230737 73230680 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73230518 73230564 73230518 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73230285 73230342 73230285 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73229483 73229620 73229483 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73229314 73229365 73229314 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73229078 73229157 73229078 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73228226 73228306 73228226 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 CDS 73227980 73228069 73227980 ID=Msa0042390-mRNA-1:cds;Parent=Msa0042390-mRNA-1
chr1_1 three_prime_UTR 73227823 73227979 73227823 ID=Msa0042390-mRNA-1:three_prime_utr;Parent=Msa0042390-mRNA-1
Gene Sequence

>Msa0042390

ATTCATTATGAGACCACTGGCCCTGAGATTTGGAGAGACTCTGGAGGGAAAATTGATGCTTTGGTTGCAGGGATAGGAACTGGAGGAACAGTAACAGGTGTTGGGAAGTTTCTTAAGGAGAAAAACGCAGAGATTAAGGTGTATGGTGTAGAACCAACTGAAAGTCCAGTTCTGGATGGAGGAAAGTCAGGCAATCATCGAATCCAAGGGATCGGTGCTGGTATCATTCCTCCTGTTCTGGAAGTTGATCTTCTAGATGAAGTTATTCAGATGGGAATTTCATCAGGAGCTGCAGCAGCTGCTGCAATTAAACTAGGGAAGAGACCAGAAAATGTAGGAAAGCTCATTGTTTTAACAGGGAACACACCATTGGTATATCTAAACAACATTACAGAAGGGTGTGTAGCTCGTATTGCTGCTAAGCTTGAATACTTGCAATCTTGCTGCAGTGTCAAAGATAGGATAGCATTGAGCATGATTGAAGATGCCGAAAATAATGGCTTCATTACTCCTGGAAAGACTCATTATGAGACCACTGGCCCTGAAATTTGGAGAGACACTGGAGGGAGAATTGATGCTTTGGTTGCAGGGATAGGAACTGGGGGAACAATAACAGGTGCTGGGAAGTTCCTCAAGGAGAGAAACTTAGATATCAAGGTGTATGGTGTAGAACCAACTGAAAGTGCAATTTTGAATGGAGGAAAGCCAGGCAAACACCTAATCCAAGGGATCGGTACTGGTGTCGTTCCCCCTGTCCTGGATCTTGATCTCCTAGATGAAATGGGAATTTCATCAGGAGCTGCAGCAGCAGCAGCAATAAAACTAGGGAAGAGACAAGAAAATGCAGGAAAGCTCATTGTTAAGAGCAGCCTTTCTTCATCAGATAACATGGAGCAACACTTTGCAATTAAGAAGGATGTCACTCAATTAATAGGGAACACACCATTGGTATATCTTAACAACATTACAGAAGGGATAGCATTGAGCATGATTGAAGATGCCGAAAATAAAGGTCTCATTACTCCTGCAAAGACTCATTATGAGACCACTGGCCCTGAGATTTGGAGAGACACTGGAGGGAGAATTGATGCTTTGGTTGCAGGGATAGGAACTGGGGGAACAATAACAGGTGCTGGGAAGTTCCTCAAGGAGAGAAACTTAGATATCAAGGTGTATGGTGTAGAACCAACTGAAAGTGCAATTTTGAATGGAGGAAAGCCAGGCGAACATCTAATCCAAGGTATCGGTAATGGTGTCGTTCCCCCTGTCCTGGATCTTGATCTCCTAGATGAAGTTATTCAGATGGGAATTTCATCAGGAGCTGCAGCAGCAGCTGCAATAAAACTAGGGAAGAGACAAGAAAATGCAGGAAAGCTCATTGTTGTGGTTTTTCCTAGTTTTGGAGAGCGTTACTTATCTTCACCACTTTTTGAATCCATCAGGCGTGAAGCTGAAGAAATGACATTTGACTGA
Protein sequence

>Msa0042390

IHYETTGPEIWRDSGGKIDALVAGIGTGGTVTGVGKFLKEKNAEIKVYGVEPTESPVLDGGKSGNHRIQGIGAGIIPPVLEVDLLDEVIQMGISSGAAAAAAIKLGKRPENVGKLIVLTGNTPLVYLNNITEGCVARIAAKLEYLQSCCSVKDRIALSMIEDAENNGFITPGKTHYETTGPEIWRDTGGRIDALVAGIGTGGTITGAGKFLKERNLDIKVYGVEPTESAILNGGKPGKHLIQGIGTGVVPPVLDLDLLDEMGISSGAAAAAAIKLGKRQENAGKLIVKSSLSSSDNMEQHFAIKKDVTQLIGNTPLVYLNNITEGIALSMIEDAENKGLITPAKTHYETTGPEIWRDTGGRIDALVAGIGTGGTITGAGKFLKERNLDIKVYGVEPTESAILNGGKPGEHLIQGIGNGVVPPVLDLDLLDEVIQMGISSGAAAAAAIKLGKRQENAGKLIVVVFPSFGERYLSSPLFESIRREAEEMTFD*