AlfalfaGEDB | Msa1089680

M. sativa cultivar zhongmu-4 / Msa1089680

KEGG: -
GO: -
PFAM: PF01582.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089680	KEH29011.1	87.467	1133	85	4	6	1090	1	1124	0.0	2004

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089680	sp\|V9M398\|RUN1_VITRO	39.461	816	431	14	7	781	27	820	2.37e-166	529
Msa1089680	sp\|V9M398\|RUN1_VITRO	32.597	181	108	4	605	781	744	914	2.80e-11	72.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089680	A0A072UHU5	87.467	1133	85	4	6	1090	1	1124	0.0	2004

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006050	Msa1089680	0.830088	3.574877e-55	-8.615850e-47
Msa0006700	Msa1089680	0.829238	5.755065e-55	-8.615850e-47
Msa0012780	Msa1089680	-0.810205	1.294139e-50	-8.615850e-47
Msa0014790	Msa1089680	0.822040	2.929868e-53	-8.615850e-47
Msa0026930	Msa1089680	0.814581	1.432726e-51	-8.615850e-47
Msa0042390	Msa1089680	0.806829	6.800852e-50	-8.615850e-47
Msa0051100	Msa1089680	0.826589	2.497199e-54	-8.615850e-47
Msa0053480	Msa1089680	0.808944	2.414253e-50	-8.615850e-47
Msa0061600	Msa1089680	-0.800652	1.303545e-48	-8.615850e-47
Msa0070740	Msa1089680	0.831105	2.015124e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089680	MtrunA17_Chr4g0009141	74.521	1095	255	7	3	1084	522	1605	0.0	1663
Msa1089680	MtrunA17_Chr4g0009141	41.732	508	271	12	7	495	16	517	1.44e-101	352
Msa1089680	MtrunA17_Chr4g0009101	75.229	1094	241	9	3	1086	540	1613	0.0	1645
Msa1089680	MtrunA17_Chr4g0009101	42.801	507	273	11	7	499	31	534	7.81e-94	330
Msa1089680	MtrunA17_Chr4g0009301	74.332	1048	249	6	3	1041	542	1578	0.0	1587
Msa1089680	MtrunA17_Chr4g0009301	42.442	516	268	14	7	499	27	536	5.11e-100	348
Msa1089680	MtrunA17_Chr4g0009241	74.929	1049	223	5	3	1041	544	1562	0.0	1581
Msa1089680	MtrunA17_Chr4g0009241	39.469	527	282	12	5	499	17	538	2.03e-98	343
Msa1089680	MtrunA17_Chr4g0009041	75.000	1048	242	6	3	1041	510	1546	0.0	1575
Msa1089680	MtrunA17_Chr4g0009041	37.958	519	263	17	3	499	23	504	6.79e-80	287

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089680	AT5G36930.3	37.062	1055	590	19	7	1005	14	1050	0.0	612
Msa1089680	AT5G36930.4	37.062	1055	590	19	7	1005	14	1050	0.0	612
Msa1089680	AT5G36930.1	37.062	1055	590	19	7	1005	14	1050	0.0	612
Msa1089680	AT5G36930.2	37.062	1055	590	19	7	1005	17	1053	0.0	611
Msa1089680	AT1G27170.1	35.832	787	454	8	7	745	14	797	3.27e-154	495
Msa1089680	AT1G27170.2	35.787	788	451	11	7	745	16	797	4.70e-147	476
Msa1089680	AT1G27180.5	35.000	800	454	13	7	745	12	806	7.53e-146	473
Msa1089680	AT1G27180.8	35.000	800	454	13	7	745	12	806	7.53e-146	473
Msa1089680	AT1G27180.1	35.000	800	454	13	7	745	176	970	1.99e-144	472
Msa1089680	AT1G27180.1	33.557	149	85	5	7	150	17	156	2.46e-14	78.6

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Find 288 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCCTTATATTCAGA+AGG	0.529984	7_3:+3308684	None:intergenic
AAAGCCATTTATAATGAAAT+TGG	0.239546	7_3:-3308731	Msa1089680:CDS
AAAGCTTATTACTTACAAGA+AGG	0.522298	7_3:-3302731	Msa1089680:three_prime_UTR
AAATCTTTCTTAATTCAAAT+GGG	0.427794	7_3:-3304845	Msa1089680:CDS
AAATGTAGGCATACACGAAG+AGG	0.621033	7_3:-3302778	Msa1089680:intron
AACAAAATATTTGCAGGTAT+TGG	0.342676	7_3:+3302200	None:intergenic
AACACTGTCTTCGGCAATAT+TGG	0.274907	7_3:+3304805	None:intergenic
AACAGAAGCTATCAAGGGTC+TGG	0.473954	7_3:-3306644	Msa1089680:CDS
AACCGAGTGGCAGAAAGTTT+TGG	0.302145	7_3:-3308210	Msa1089680:CDS
AACCTGTAAAACACTGTCTT+CGG	0.460261	7_3:+3304796	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATCTATCTTATAGAATAC+AGG	+	chr7_3:3302077-3302096	None:intergenic	30.0%
ATGAATCCACAAAGAGTAAT+TGG	-	chr7_3:3302168-3302187	Msa1089680:three_prime_UTR	30.0%
ATTTGTTCTGCAATTCCATA+CGG	+	chr7_3:3302548-3302567	None:intergenic	30.0%
ACTGAATTATTCATGACACT+AGG	-	chr7_3:3302602-3302621	Msa1089680:three_prime_UTR	30.0%
TTATTCATGACACTAGGATA+TGG	-	chr7_3:3302608-3302627	Msa1089680:three_prime_UTR	30.0%
TTAAGTTTACCAAAAGTCAC+TGG	+	chr7_3:3302762-3302781	None:intergenic	30.0%
AGTAAATGAGAACAGATTAC+TGG	-	chr7_3:3302796-3302815	Msa1089680:intron	30.0%
TCAATTGCATCTATCAAAAG+AGG	+	chr7_3:3302914-3302933	None:intergenic	30.0%
TTGATTCTGCTCTTTATCAT+TGG	-	chr7_3:3302930-3302949	Msa1089680:intron	30.0%
GTAGAATAATCATCACAACA+AGG	-	chr7_3:3303452-3303471	Msa1089680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	3301783	3310139	3301783	ID=Msa1089680;Name=Msa1089680
chr7_3	mRNA	3301783	3310139	3301783	ID=Msa1089680-mRNA-1;Parent=Msa1089680;Name=Msa1089680-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0.85\|0.75\|1\|0.57\|0.5\|8\|1010\|1090
chr7_3	exon	3301783	3302268	3301783	ID=Msa1089680-mRNA-1:exon:1292;Parent=Msa1089680-mRNA-1
chr7_3	exon	3302495	3302792	3302495	ID=Msa1089680-mRNA-1:exon:1291;Parent=Msa1089680-mRNA-1
chr7_3	exon	3303528	3303707	3303528	ID=Msa1089680-mRNA-1:exon:1290;Parent=Msa1089680-mRNA-1
chr7_3	exon	3303834	3304517	3303834	ID=Msa1089680-mRNA-1:exon:1289;Parent=Msa1089680-mRNA-1
chr7_3	exon	3304780	3305569	3304780	ID=Msa1089680-mRNA-1:exon:1288;Parent=Msa1089680-mRNA-1
chr7_3	exon	3306393	3306668	3306393	ID=Msa1089680-mRNA-1:exon:1287;Parent=Msa1089680-mRNA-1
chr7_3	exon	3307851	3308955	3307851	ID=Msa1089680-mRNA-1:exon:1286;Parent=Msa1089680-mRNA-1
chr7_3	exon	3309676	3310139	3309676	ID=Msa1089680-mRNA-1:exon:1285;Parent=Msa1089680-mRNA-1
chr7_3	CDS	3309676	3310139	3309676	ID=Msa1089680-mRNA-1:cds;Parent=Msa1089680-mRNA-1
chr7_3	CDS	3307851	3308955	3307851	ID=Msa1089680-mRNA-1:cds;Parent=Msa1089680-mRNA-1
chr7_3	CDS	3306393	3306668	3306393	ID=Msa1089680-mRNA-1:cds;Parent=Msa1089680-mRNA-1
chr7_3	CDS	3304780	3305569	3304780	ID=Msa1089680-mRNA-1:cds;Parent=Msa1089680-mRNA-1
chr7_3	CDS	3303880	3304517	3303880	ID=Msa1089680-mRNA-1:cds;Parent=Msa1089680-mRNA-1
chr7_3	three_prime_UTR	3303834	3303879	3303834	ID=Msa1089680-mRNA-1:three_prime_utr;Parent=Msa1089680-mRNA-1
chr7_3	three_prime_UTR	3303528	3303707	3303528	ID=Msa1089680-mRNA-1:three_prime_utr;Parent=Msa1089680-mRNA-1
chr7_3	three_prime_UTR	3302495	3302792	3302495	ID=Msa1089680-mRNA-1:three_prime_utr;Parent=Msa1089680-mRNA-1
chr7_3	three_prime_UTR	3301783	3302268	3301783	ID=Msa1089680-mRNA-1:three_prime_utr;Parent=Msa1089680-mRNA-1

Gene Sequence

>Msa1089680

ATGTTTCAGCCAAAGATGTACGATGTGTTCTTGAGTTTTAGAGGGGACGACAGTCGTGCGAAATTCGTTTCACATTTGCATTCCTCTCTTCAAAATTCCGCGATTCACGTTTTCAAAGACGATGACGAGATCGAACGAGGAGATCAGATCTCAATATCACTGTTGCGAGCAATTGGACGGTCTAGAATTGCCATCGTTGTTTTGTCTAAAAAATATGCTAATTCAAGATGGTGTATGCTAGAGCTGGAGAAGATCATGGAAATTGGTAGAGTCAGGGGTTTGGTGGTTGTGCCTGTATTCTATAAGATAGATCCCTCACAAGTACGTCATCAGAAAGGCCAGTTTGGTAAAGGTTTTGATGATCTTATATCAAAAATCTCTGTGGATGAATCCACAAAGAGTAATTGGAGAAGAGACCTCATTGATATTGGTGGCATAGCAGGGTTTGTACTCAAACATTCCAGGAATGAAAGTGATGATATCAAGAATGTTGTTGAACATGTTACCCGTTTGCTAGATAGGAAAGAGTTATTTGTTGCTGAACATCCAGTGGGAATTGAATCTCGTGTGCAAGCTGCAACTAAGCTATTAAACATCCAAAACGCAGAAGATGTCTTACTTCTAGGGATATGGGGAATGGGGGGTATAGGCAAAACAACCATTGCCAAAGCCATTTATAATGAAATTGGTAGCAAGTTTGACGGAAAGAGCTTCCTTCTGAATATAAGGGAATTTTGGGAGACAGGTACTAATCAAGTTTCACTACAGCAACAAGTACTTTGTGATGTTTACAAAACAACTTCATTCAAGATACGTGACATTGAATCAGGGAAAAATATATTGAAGCAAAGACTTGCCCAGAAAAGGGTATTTTTTGTACTTGATGATGTTGATGAATTGGACCAACTAAAGGCTTTGTGTGGAAGCCGAGAATGGTTTGGTTCGGGGAGTAGAATAATCATCACAACAAGGGATATGCATCTTCTTAGATCGTGTAGAGTTGATCAAGTGTATAAAATAGAAGAAATGGATGAAAGTGAAGCTCTTGCTCTTTTCAGTTGGCATGCATTCAAGCAACCAAGTCCGATAGAAGATTTTGCTACACATTCAACAGATGTGATTGCTTATTCTGGGAGATTGCCCCTAGCACTTGAAGTCCTTGGGTCTTATTTATTTGACTGTGAAATAACCGAGTGGCAGAAAGTTTTGGAGAAACTTAGATGTATCCCCCATGATCAAGTACAAAAGAAGCTAAGAATAAGTTTTGATGGTTTAAAAGATGTTACAGAGCAACAAATATTTCTTGATATAGTTTGTTTCTTTATTGGGATGAACCGAAATGATGTAATACAAATATTAAATGGGTGTGGATTTTTTGCTGATGTTGGAGTTAAAGTCCTGGTAGAGCGAAGCCTTGTTACTGTTGACAATAGAAACAAACTTAGAATGCATGATTTGTTGAGAGACATGGGAAGGCAGATAATTTTTGAGGAATCTCCGTTGGATCCTGAGAACCGAAGTAGGTTGTGGTGTCATGAGGAAGCGCTTGATATATTATCAATGCAGAAGGGAACAGAAGCTATCAAGGGTCTGGCTTTGAAGTTTCAGGGTGAAAAAACAGTTTGTCTGAATACTGAAGCATTTACGAAGATGAATAAACTCAGATTGCTTCAACTTGCTGGTGTGCAACTGAATGGAAATTTTAAATGTCTTTCAAAAGATCTTAGATGGCTGTACTGGCATGGATTTCCATTAACTTACGTTCCTGCAGAATTTCAGCAAGGAAATCTAGTTGCCATCAAATTAAAACATAGTAATCTCAAACAAATATGGAAGAAGAGCCAGATGGTACAGAGTCTAACAATTCTTGATCTTAGTCATTCTCTATGTTTGACAGAAACCCCAAACTTTTCATACTTGCCTAATCTTGAAAAGTTAGTGCTCAAAGACTGCCCAAGTTTGTCTGCGGTCTCCCATAGCATTGGATCTCTCCAAAAACTTCTTCTGATAAATTTGACAGACTGCACAGGTCTTCAAAAACTTCCAAGAAGTATCTATACATTAAAATCTCTAGAAACCTTGATTCTTTCAGGATGTTCCAAGATTAACAAATTGGAGGAGGACATAGAACAGATGGAATCGTTGACAACCTTGATTGCGGATAAGACTGCTATAACAAAAGTCCCCTCTTCAATAGTAAGATTGAAAAGCATTGGATATATTTCTCTGAGTGGCTTTGAAGGATTTTCAAATGATGTATTTCCTTCTATTATTCGGTCTTGGATGTCACCATCAAACAATGTGGAGTCCCTAGTTCAAACATCTGTGTTCAAGGACCTTCCTAAGCTTCGAAGTTTTTGGGTGGAGTGTAACTCTAAACGACAACTTAGTCGAAATGTAAAAAATATTTTGGACGTATTAAAAGCCACAAATTGTCGTAAATTGGATGAAAGCGAAACTATATCACAAAACTCTGATATGTTTCCTTCTCTTTTAATTGATGACTCTCTTGGTCAAGTTTGCACTTCTGGGTCAAAGAATTACTTGAAATCTTTCTTAATTCAAATGGGAACGAAATTCCAAGTCTCCAATATTGCCGAAGACAGTGTTTTACAGGTTTGCATATCTCTTCCGAACAACACAGATGGGACGTGCGATTCATTTTTGCTCCCCTGTGACAATATATCTGATTGGTTAACCTTTAGTTGCAAAGGTTGCTCTATAATATTTGTTGTCCCAACAGTGAATGGGAGTTATCTGAAGAGTATGATGTTGTTCATTGTCTATAAATACTCTTCACCGGACAACATAACATCAGAAGGTTGTCAAGGTTTGTTTGTCATAAATTACACAAAAACAACCATTCAGGCCTACAAAAGAGATACACTAACCTCCTTTGAGGATGAGGATTGGCAGAGCATAAAATCAAATCTAGAACCTGGTAATGAAGTGGAGGTTATAATTGTTTTTGAAGAGGGATTCACTGTAGAGAAGACAACAATATATCTCTTATATGATGAATCAACGAACAAAGAAATGGAACACTGCAATGCAGTAGAGGAGGAGGATGCTATTGTTTCTGGGAATGAAGATACGGATGTCGGTGTATCTGGTGGTTATAACCTTGATGTGCCACTGGGAAACAATATCACTGGTCTTGGTCAAGATGAAAATATAAGTGAAGATAAGAACTTGCATGCAATGAATAAGAGTTCTGGTGATGATGCCATGGAAACAAATAAGAAATGTGCATGCTGTTTCTGGTGGCGGTGA

Protein sequence

>Msa1089680

MFQPKMYDVFLSFRGDDSRAKFVSHLHSSLQNSAIHVFKDDDEIERGDQISISLLRAIGRSRIAIVVLSKKYANSRWCMLELEKIMEIGRVRGLVVVPVFYKIDPSQVRHQKGQFGKGFDDLISKISVDESTKSNWRRDLIDIGGIAGFVLKHSRNESDDIKNVVEHVTRLLDRKELFVAEHPVGIESRVQAATKLLNIQNAEDVLLLGIWGMGGIGKTTIAKAIYNEIGSKFDGKSFLLNIREFWETGTNQVSLQQQVLCDVYKTTSFKIRDIESGKNILKQRLAQKRVFFVLDDVDELDQLKALCGSREWFGSGSRIIITTRDMHLLRSCRVDQVYKIEEMDESEALALFSWHAFKQPSPIEDFATHSTDVIAYSGRLPLALEVLGSYLFDCEITEWQKVLEKLRCIPHDQVQKKLRISFDGLKDVTEQQIFLDIVCFFIGMNRNDVIQILNGCGFFADVGVKVLVERSLVTVDNRNKLRMHDLLRDMGRQIIFEESPLDPENRSRLWCHEEALDILSMQKGTEAIKGLALKFQGEKTVCLNTEAFTKMNKLRLLQLAGVQLNGNFKCLSKDLRWLYWHGFPLTYVPAEFQQGNLVAIKLKHSNLKQIWKKSQMVQSLTILDLSHSLCLTETPNFSYLPNLEKLVLKDCPSLSAVSHSIGSLQKLLLINLTDCTGLQKLPRSIYTLKSLETLILSGCSKINKLEEDIEQMESLTTLIADKTAITKVPSSIVRLKSIGYISLSGFEGFSNDVFPSIIRSWMSPSNNVESLVQTSVFKDLPKLRSFWVECNSKRQLSRNVKNILDVLKATNCRKLDESETISQNSDMFPSLLIDDSLGQVCTSGSKNYLKSFLIQMGTKFQVSNIAEDSVLQVCISLPNNTDGTCDSFLLPCDNISDWLTFSCKGCSIIFVVPTVNGSYLKSMMLFIVYKYSSPDNITSEGCQGLFVINYTKTTIQAYKRDTLTSFEDEDWQSIKSNLEPGNEVEVIIVFEEGFTVEKTTIYLLYDESTNKEMEHCNAVEEEDAIVSGNEDTDVGVSGGYNLDVPLGNNITGLGQDENISEDKNLHAMNKSSGDDAMETNKKCACCFWWR*