AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426750 MtrunA17_Chr2g0320581 95.283 212 10 0 1 212 292 503 4.66e-152 431
Msa1426750 MtrunA17_Chr2g0315161 59.799 199 76 2 1 198 279 474 8.85e-85 259
Msa1426750 MtrunA17_Chr7g0266851 44.340 212 102 4 1 201 292 498 9.12e-57 187
Msa1426750 MtrunA17_Chr7g0266831 41.121 214 115 4 1 203 305 518 6.55e-49 167
Msa1426750 MtrunA17_Chr4g0054411 39.130 230 107 3 2 198 289 518 2.11e-48 165
Msa1426750 MtrunA17_Chr2g0316381 57.447 47 20 0 160 206 7 53 5.29e-12 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426750 AT5G22860.1 48.113 212 100 4 1 205 291 499 8.95e-66 211
Msa1426750 AT2G24280.1 44.118 204 110 2 2 201 287 490 4.10e-55 183
Msa1426750 AT5G65760.1 40.566 212 109 5 2 200 296 503 3.24e-49 167
Msa1426750 AT5G22860.4 47.647 170 79 4 1 163 291 457 1.75e-48 165
Msa1426750 AT5G22860.2 48.026 152 69 4 1 145 291 439 8.15e-43 149
Msa1426750 AT5G22860.3 48.026 152 69 4 1 145 291 439 8.15e-43 149
Msa1426750 AT2G24280.2 42.568 148 81 2 2 145 287 434 8.30e-34 125
Msa1426750 AT5G22860.7 43.089 123 60 4 1 116 291 410 1.45e-27 109
Msa1426750 AT5G22860.5 43.089 123 60 4 1 116 291 410 1.45e-27 109
Msa1426750 AT5G22860.6 43.089 123 60 4 1 116 291 410 1.45e-27 109

Find 58 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCAAAATAATGGTTTA+AGG 0.159477 tig0026063:+68076 None:intergenic
CATTGGATTACTACTTATTA+TGG 0.189882 tig0026063:-66315 Msa1426750:CDS
GGAATTGATAAAGCTTCTTT+TGG 0.245805 tig0026063:-67972 Msa1426750:CDS
ATCATATATATCATTTGTTT+TGG 0.250067 tig0026063:+64801 None:intergenic
AAACGAGTTCTTCAAAAGTT+TGG 0.309801 tig0026063:-65835 Msa1426750:CDS
CCACTACATATCACGGTAAC+TGG 0.327485 tig0026063:+67993 None:intergenic
TATTGCAGGATCCCATTGTT+TGG 0.351682 tig0026063:-64954 Msa1426750:intron
GGCCAGTATTATATTGATCT+TGG 0.358230 tig0026063:-64848 Msa1426750:CDS
CGTTGTTCAATCAACCATCT+TGG 0.362655 tig0026063:+64905 None:intergenic
GCTTACCCGGCACTACTATA+AGG 0.362908 tig0026063:+65778 None:intergenic
CTAAGAATTGAAAGACCATT+TGG 0.372278 tig0026063:+68382 None:intergenic
AACTCAAAATAATGGTTTAA+GGG 0.377565 tig0026063:+68077 None:intergenic
ATCCTTGATAAGATATATTC+AGG 0.388285 tig0026063:-67942 Msa1426750:CDS
CCGCAACAAGACTCTTTGAT+AGG 0.388564 tig0026063:+65653 None:intergenic
GAAAGATGCAAGAAAGAATA+TGG 0.398219 tig0026063:-66354 Msa1426750:CDS
GTGTCTCACCTCGCCCTCAT+TGG 0.398503 tig0026063:-66332 Msa1426750:CDS
ATGAAACAATATTGAACTCT+TGG 0.400378 tig0026063:-68448 Msa1426750:five_prime_UTR
ACAAATCTCTTTAAGTCAAA+AGG 0.401588 tig0026063:+66378 None:intergenic
CCTCTGACAACTCAAAATAA+TGG 0.405562 tig0026063:+68069 None:intergenic
CACCAAGATCAATATAATAC+TGG 0.419795 tig0026063:+64846 None:intergenic
TTCAGGTGTTGTGGCTTACA+AGG 0.449221 tig0026063:-67925 Msa1426750:CDS
ATCACGGTAACTGGATAGTC+TGG 0.453975 tig0026063:+68002 None:intergenic
AAAGATCCTTATAGTAGTGC+CGG 0.462281 tig0026063:-65784 Msa1426750:CDS
ATGGTGATGCCTTTCGCTAT+AGG 0.480405 tig0026063:-66426 Msa1426750:CDS
AATTTAGACATGCAGTGAAA+TGG 0.492903 tig0026063:-66445 Msa1426750:intron
GTTGTGGCTTACAAGGGAAA+TGG 0.503894 tig0026063:-67918 Msa1426750:CDS
AACGAGTTAATATATATCAA+AGG 0.509970 tig0026063:-64775 Msa1426750:three_prime_UTR
ATTGATCTTGGTGCACTCCA+TGG 0.511982 tig0026063:-64836 Msa1426750:CDS
AGATAGAATATCCAAACAAT+GGG 0.517359 tig0026063:+64943 None:intergenic
GTTGCGGTCCATGCGATCAA+TGG 0.519229 tig0026063:-65637 Msa1426750:intron
ACGAGTTAATATATATCAAA+GGG 0.519659 tig0026063:-64774 Msa1426750:three_prime_UTR
AAAGTAGCGTCGCAGCCAAA+TGG 0.523922 tig0026063:-68413 Msa1426750:five_prime_UTR
AAGATAGAATATCCAAACAA+TGG 0.524080 tig0026063:+64942 None:intergenic
GAGATTATTCAAGAGTGGAT+TGG 0.526156 tig0026063:-64869 Msa1426750:CDS
TAAGATATATTCAGGTGTTG+TGG 0.531386 tig0026063:-67934 Msa1426750:CDS
CACCTGAATATATCTTATCA+AGG 0.532694 tig0026063:+67940 None:intergenic
ATCAATTCCACTACATATCA+CGG 0.544440 tig0026063:+67986 None:intergenic
CTCTTTAAGTCAAAAGGAGA+AGG 0.546964 tig0026063:+66384 None:intergenic
CAAAAGAAAGTGATCCAAGA+TGG 0.547883 tig0026063:-64919 Msa1426750:CDS
AGACAGAAGTGGGTTGGAGA+TGG 0.550445 tig0026063:-67860 Msa1426750:CDS
AAGATCCTTATAGTAGTGCC+GGG 0.557200 tig0026063:-65783 Msa1426750:intron
AGAAGTGGGTTGGAGATGGC+AGG 0.557628 tig0026063:-67856 Msa1426750:intron
TATCTGAGACAGAAGTGGGT+TGG 0.562993 tig0026063:-67866 Msa1426750:CDS
ACTCAAAATAATGGTTTAAG+GGG 0.563487 tig0026063:+68078 None:intergenic
CCAGTTACCGTGATATGTAG+TGG 0.564278 tig0026063:-67993 Msa1426750:CDS
TGGATTACTACTTATTATGG+AGG 0.567337 tig0026063:-66312 Msa1426750:CDS
GATTGAACAACGAAATAAAG+AGG 0.581874 tig0026063:-64894 Msa1426750:CDS
AAATATATCTGAGACAGAAG+TGG 0.583630 tig0026063:-67871 Msa1426750:CDS
AAGACATACCATTGATCGCA+TGG 0.584348 tig0026063:+65629 None:intergenic
AGGTCGAGATTATTCAAGAG+TGG 0.591638 tig0026063:-64874 Msa1426750:CDS
AATATATCTGAGACAGAAGT+GGG 0.597565 tig0026063:-67870 Msa1426750:CDS
AATAAGTAGTAATCCAATGA+GGG 0.598968 tig0026063:+66319 None:intergenic
GTAGTAATCCAATGAGGGCG+AGG 0.600782 tig0026063:+66324 None:intergenic
TCAGGTGTTGTGGCTTACAA+GGG 0.616951 tig0026063:-67924 Msa1426750:CDS
GTATCATTTCCTATAGCGAA+AGG 0.619045 tig0026063:+66417 None:intergenic
TAATAAGTAGTAATCCAATG+AGG 0.619229 tig0026063:+66318 None:intergenic
CCTATCAAAGAGTCTTGTTG+CGG 0.666760 tig0026063:-65653 Msa1426750:CDS
ACGGTAACTGGATAGTCTGG+AGG 0.692907 tig0026063:+68005 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTTATAATAATTTTA+AGG + tig0026063:68091-68110 None:intergenic 0.0%
!! TTATGTATGTAAATTTATAA+TGG - tig0026063:67879-67898 Msa1426750:CDS 10.0%
!!! TAACTAATTAATTCATTTTC+AGG - tig0026063:64803-64822 Msa1426750:exon 15.0%
!!! ATAATTTAACGTTTTTTTTG+TGG + tig0026063:65095-65114 None:intergenic 15.0%
!! AACGTTAAATTATTAAATGT+TGG - tig0026063:65102-65121 Msa1426750:intron 15.0%
!!! AAAGTCTTATTTTTTTAATG+CGG + tig0026063:65567-65586 None:intergenic 15.0%
!!! ATATGTTTTATATTCTCTTT+AGG + tig0026063:65964-65983 None:intergenic 15.0%
!! GACAAAAAAATTTCATAAAA+GGG + tig0026063:66250-66269 None:intergenic 15.0%
!! AAAAGATGTATAATAAATAG+AGG + tig0026063:66332-66351 None:intergenic 15.0%
!!! TTTTTATCTTTGCATATATA+TGG - tig0026063:66777-66796 Msa1426750:intron 15.0%
!! AAAAAAAGACATTTAAATCA+AGG + tig0026063:67313-67332 None:intergenic 15.0%
!!! GATTTAAATGTCTTTTTTTA+AGG - tig0026063:67314-67333 Msa1426750:intron 15.0%
!!! CAATTCAATTTTGAATTTTA+TGG + tig0026063:67525-67544 None:intergenic 15.0%
!!! TGTCTTGTTATATATATATA+AGG - tig0026063:67697-67716 Msa1426750:intron 15.0%
!!! GTCTTGTTATATATATATAA+GGG - tig0026063:67698-67717 Msa1426750:intron 15.0%
!!! TCTTGTTATATATATATAAG+GGG - tig0026063:67699-67718 Msa1426750:intron 15.0%
!! ATCAGTTAAGTTAAAATTTA+TGG + tig0026063:67798-67817 None:intergenic 15.0%
!! TTTATACTACTAAAATATTG+TGG - tig0026063:68152-68171 Msa1426750:intron 15.0%
!! AAATAATTTAGTGACTAAAT+TGG - tig0026063:68222-68241 Msa1426750:intron 15.0%
!!! ATCATATATATCATTTGTTT+TGG + tig0026063:68478-68497 None:intergenic 15.0%
!!! TAATGAAAGTATGTTTATAC+TGG + tig0026063:64938-64957 None:intergenic 20.0%
!! TGGTAATAAAAAACAAACAA+AGG + tig0026063:64978-64997 None:intergenic 20.0%
!!! TTTGTTTTTTATTACCAAAC+AGG - tig0026063:64981-65000 Msa1426750:intron 20.0%
!! AACTCAAAATAATGGTTTAA+GGG + tig0026063:65202-65221 None:intergenic 20.0%
!!! AAGTCTTATTTTTTTAATGC+GGG + tig0026063:65566-65585 None:intergenic 20.0%
!!! TACCATATATGTTTTTATGT+TGG + tig0026063:65667-65686 None:intergenic 20.0%
!!! CTGGTTAAATCAATTTTATA+AGG - tig0026063:65930-65949 Msa1426750:intron 20.0%
!! AACTTTCTGTCAATTTATAT+CGG - tig0026063:66073-66092 Msa1426750:intron 20.0%
!!! ATAAAAGGGTCTTATAATTA+GGG + tig0026063:66236-66255 None:intergenic 20.0%
!! GGACAAAAAAATTTCATAAA+AGG + tig0026063:66251-66270 None:intergenic 20.0%
!! ATGTACTTGAAAATAACAAA+GGG + tig0026063:66287-66306 None:intergenic 20.0%
!! AATGTACTTGAAAATAACAA+AGG + tig0026063:66288-66307 None:intergenic 20.0%
!! AGTCAAATAAATGCAATAAT+TGG - tig0026063:66543-66562 Msa1426750:intron 20.0%
!!! AATATGTAACATTGATTAGA+GGG - tig0026063:66666-66685 Msa1426750:intron 20.0%
!! AATTATTACATCAAAGAAAG+AGG - tig0026063:67069-67088 Msa1426750:intron 20.0%
!! TAGACAATCTAAATTAATGT+AGG + tig0026063:67102-67121 None:intergenic 20.0%
!!! ACAAGAAATTAATTTTGTTG+TGG - tig0026063:67396-67415 Msa1426750:intron 20.0%
!! CAATGTTATAAAATATTGCA+GGG - tig0026063:67590-67609 Msa1426750:intron 20.0%
!!! TGTTTTTTCTTGATAAAGAA+AGG + tig0026063:67997-68016 None:intergenic 20.0%
!!! TATCATTTGTTTTGGAATTT+TGG + tig0026063:68470-68489 None:intergenic 20.0%
!! AACGAGTTAATATATATCAA+AGG - tig0026063:68501-68520 Msa1426750:five_prime_UTR 20.0%
! ATGAAACAATATTGAACTCT+TGG - tig0026063:64844-64863 Msa1426750:CDS 25.0%
! GATAATGCATAATATATGCA+AGG - tig0026063:65042-65061 Msa1426750:intron 25.0%
!!! ATTTAACGTTTTTTTTGTGG+TGG + tig0026063:65092-65111 None:intergenic 25.0%
! ACTCAAAATAATGGTTTAAG+GGG + tig0026063:65201-65220 None:intergenic 25.0%
! CAACTCAAAATAATGGTTTA+AGG + tig0026063:65203-65222 None:intergenic 25.0%
! ATCCTTGATAAGATATATTC+AGG - tig0026063:65334-65353 Msa1426750:intron 25.0%
!! TCTGTCTCAGATATATTTTT+GGG + tig0026063:65403-65422 None:intergenic 25.0%
!! TTCTGTCTCAGATATATTTT+TGG + tig0026063:65404-65423 None:intergenic 25.0%
! GTGCAATAATAATAAGTTCT+TGG - tig0026063:65458-65477 Msa1426750:intron 25.0%
! GGTAAAAATGTCTAAATTGT+TGG - tig0026063:65509-65528 Msa1426750:intron 25.0%
!! TTTTTCCTAACAATAACATC+CGG + tig0026063:65536-65555 None:intergenic 25.0%
! GTCCAACATAAAAACATATA+TGG - tig0026063:65662-65681 Msa1426750:CDS 25.0%
!! CATAAAAGGGTCTTATAATT+AGG + tig0026063:66237-66256 None:intergenic 25.0%
! TGTACTTGAAAATAACAAAG+GGG + tig0026063:66286-66305 None:intergenic 25.0%
!! TATCTTAATTCCTGTGATTT+TGG - tig0026063:66463-66482 Msa1426750:intron 25.0%
! GTAGCAATTATACTAAAATG+TGG - tig0026063:66517-66536 Msa1426750:intron 25.0%
! TTGTATAAAAGTCAATTGCT+TGG - tig0026063:66620-66639 Msa1426750:intron 25.0%
!! GAATATGTAACATTGATTAG+AGG - tig0026063:66665-66684 Msa1426750:intron 25.0%
! ACAAATCTCTTTAAGTCAAA+AGG + tig0026063:66901-66920 None:intergenic 25.0%
!!! TTTTGACTTAAAGAGATTTG+TGG - tig0026063:66900-66919 Msa1426750:intron 25.0%
! AATAAGTAGTAATCCAATGA+GGG + tig0026063:66960-66979 None:intergenic 25.0%
! TAATAAGTAGTAATCCAATG+AGG + tig0026063:66961-66980 None:intergenic 25.0%
! CATTGGATTACTACTTATTA+TGG - tig0026063:66961-66980 Msa1426750:intron 25.0%
!! AGAAAAAAGAAGTACAAACA+TGG + tig0026063:66990-67009 None:intergenic 25.0%
!!! AACACTTTTTACACTTTTGA+AGG + tig0026063:67217-67236 None:intergenic 25.0%
!! AGCAACATTATATTTTCGAA+TGG - tig0026063:67465-67484 Msa1426750:intron 25.0%
! GCAATGTTATAAAATATTGC+AGG - tig0026063:67589-67608 Msa1426750:intron 25.0%
!!! ACACCTTAATGTTTTTATGT+GGG + tig0026063:67738-67757 None:intergenic 25.0%
!!! TACACCTTAATGTTTTTATG+TGG + tig0026063:67739-67758 None:intergenic 25.0%
! ATACATAAATGAAGTTGTCA+GGG + tig0026063:67867-67886 None:intergenic 25.0%
! TATCTGTCATGTTCTATAAT+TGG + tig0026063:68027-68046 None:intergenic 25.0%
!! AATATTGTGGACTAAATTGA+TGG - tig0026063:68165-68184 Msa1426750:intron 25.0%
!! GATGGATCACATATATTTTA+AGG - tig0026063:68183-68202 Msa1426750:intron 25.0%
! TAATTTAGTGACTAAATTGG+AGG - tig0026063:68225-68244 Msa1426750:intron 25.0%
! AATTTAGTGACTAAATTGGA+GGG - tig0026063:68226-68245 Msa1426750:intron 25.0%
! ATAGACATTAATTCTATTGC+AGG - tig0026063:68308-68327 Msa1426750:intron 25.0%
! AGATAGAATATCCAAACAAT+GGG + tig0026063:68336-68355 None:intergenic 25.0%
! AAGATAGAATATCCAAACAA+TGG + tig0026063:68337-68356 None:intergenic 25.0%
CTAAGAATTGAAAGACCATT+TGG + tig0026063:64897-64916 None:intergenic 30.0%
AGGACTAATAATTTCCTGTT+TGG + tig0026063:64998-65017 None:intergenic 30.0%
ATCAATTCCACTACATATCA+CGG + tig0026063:65293-65312 None:intergenic 30.0%
! GGAATTGATAAAGCTTCTTT+TGG - tig0026063:65304-65323 Msa1426750:intron 30.0%
CACCTGAATATATCTTATCA+AGG + tig0026063:65339-65358 None:intergenic 30.0%
! TAAGATATATTCAGGTGTTG+TGG - tig0026063:65342-65361 Msa1426750:intron 30.0%
!! CTGTCTCAGATATATTTTTG+GGG + tig0026063:65402-65421 None:intergenic 30.0%
! AAATATATCTGAGACAGAAG+TGG - tig0026063:65405-65424 Msa1426750:intron 30.0%
! AATATATCTGAGACAGAAGT+GGG - tig0026063:65406-65425 Msa1426750:intron 30.0%
TCCATAAATTCTAACTCAAC+TGG - tig0026063:65488-65507 Msa1426750:intron 30.0%
ACCAGTTGAGTTAGAATTTA+TGG + tig0026063:65492-65511 None:intergenic 30.0%
AAATGTCTAAATTGTTGGAC+CGG - tig0026063:65514-65533 Msa1426750:intron 30.0%
! ATTGATTTAACCAGCTTGTA+AGG + tig0026063:65924-65943 None:intergenic 30.0%
TATATCAAGCTATAAGCACT+AGG + tig0026063:66039-66058 None:intergenic 30.0%
ACAAAGGGGTCATATAAAAA+GGG + tig0026063:66272-66291 None:intergenic 30.0%
AACAAAGGGGTCATATAAAA+AGG + tig0026063:66273-66292 None:intergenic 30.0%
AAACTAACTCTCTCTCTTAA+AGG - tig0026063:66387-66406 Msa1426750:CDS 30.0%
AATCACAGGAATTAAGATAG+TGG + tig0026063:66462-66481 None:intergenic 30.0%
! GCAAAAGGGTCTTATATATA+AGG - tig0026063:66485-66504 Msa1426750:intron 30.0%
AATTTAGACATGCAGTGAAA+TGG - tig0026063:66831-66850 Msa1426750:intron 30.0%
GAAAGATGCAAGAAAGAATA+TGG - tig0026063:66922-66941 Msa1426750:intron 30.0%
TGGATTACTACTTATTATGG+AGG - tig0026063:66964-66983 Msa1426750:intron 30.0%
!!! TTTGTTGTGGTTTTGACTAA+TGG - tig0026063:67409-67428 Msa1426750:intron 30.0%
AAACGAGTTCTTCAAAAGTT+TGG - tig0026063:67441-67460 Msa1426750:intron 30.0%
ACACCCACATAAAAACATTA+AGG - tig0026063:67732-67751 Msa1426750:intron 30.0%
CATACATAAATGAAGTTGTC+AGG + tig0026063:67868-67887 None:intergenic 30.0%
TCTCAATAAAAAGAAGAGCT+AGG + tig0026063:67967-67986 None:intergenic 30.0%
GATTGAACAACGAAATAAAG+AGG - tig0026063:68382-68401 Msa1426750:five_prime_UTR 30.0%
CACCAAGATCAATATAATAC+TGG + tig0026063:68433-68452 None:intergenic 30.0%
TGAGCTTAACTCAGTTGTTA+AGG - tig0026063:65020-65039 Msa1426750:intron 35.0%
TGCATAATATATGCAAGGTC+TGG - tig0026063:65047-65066 Msa1426750:intron 35.0%
GCATAATATATGCAAGGTCT+GGG - tig0026063:65048-65067 Msa1426750:intron 35.0%
CATAATATATGCAAGGTCTG+GGG - tig0026063:65049-65068 Msa1426750:intron 35.0%
!! ACAACAAAACTCTAGAGTGT+TGG - tig0026063:65134-65153 Msa1426750:intron 35.0%
CCTCTGACAACTCAAAATAA+TGG + tig0026063:65210-65229 None:intergenic 35.0%
!!! CCATTATTTTGAGTTGTCAG+AGG - tig0026063:65207-65226 Msa1426750:intron 35.0%
GCTTTGTAAGGATGTGTTAT+AGG - tig0026063:65640-65659 Msa1426750:CDS 35.0%
ATGCTCATAACTATTGAGCT+TGG + tig0026063:65728-65747 None:intergenic 35.0%
CTCAATAGTTATGAGCATGA+GGG - tig0026063:65730-65749 Msa1426750:intron 35.0%
TCAATAGTTATGAGCATGAG+GGG - tig0026063:65731-65750 Msa1426750:intron 35.0%
! ATTGGAAAGTCTTATCGATC+AGG - tig0026063:65757-65776 Msa1426750:intron 35.0%
ATGCTCATAACTATTGAGCT+TGG + tig0026063:65728-65747 None:intergenic 35.0%
! GAGTTCTGTCTTTTCAATGT+GGG + tig0026063:65868-65887 None:intergenic 35.0%
! AGAGTTCTGTCTTTTCAATG+TGG + tig0026063:65869-65888 None:intergenic 35.0%
! AAGGGTCTTATAATTAGGGA+CGG + tig0026063:66232-66251 None:intergenic 35.0%
!! ATTCCTGTGATTTTGGCAAA+AGG - tig0026063:66470-66489 Msa1426750:intron 35.0%
!! TTCCTGTGATTTTGGCAAAA+GGG - tig0026063:66471-66490 Msa1426750:intron 35.0%
! GGTCTTATATATAAGGACGT+AGG - tig0026063:66492-66511 Msa1426750:intron 35.0%
AAATGTGACTCATTGTGAGA+TGG - tig0026063:66731-66750 Msa1426750:intron 35.0%
GTATCATTTCCTATAGCGAA+AGG + tig0026063:66862-66881 None:intergenic 35.0%
CTCTTTAAGTCAAAAGGAGA+AGG + tig0026063:66895-66914 None:intergenic 35.0%
AAAGATCCTTATAGTAGTGC+CGG - tig0026063:67492-67511 Msa1426750:intron 35.0%
! TGAATTTTATGGTGCTTACC+CGG + tig0026063:67514-67533 None:intergenic 35.0%
TGGACAAAGAAATACACTAG+TGG + tig0026063:67778-67797 None:intergenic 35.0%
AGCTAGGAAAAATAGAACGA+GGG + tig0026063:67951-67970 None:intergenic 35.0%
CAAAAGAAAGTGATCCAAGA+TGG - tig0026063:68357-68376 Msa1426750:intron 35.0%
GAGATTATTCAAGAGTGGAT+TGG - tig0026063:68407-68426 Msa1426750:five_prime_UTR 35.0%
GGCCAGTATTATATTGATCT+TGG - tig0026063:68428-68447 Msa1426750:five_prime_UTR 35.0%
!!! TTTTGAGTTGTCAGAGGACT+TGG - tig0026063:65213-65232 Msa1426750:intron 40.0%
TTGGACCGGATGTTATTGTT+AGG - tig0026063:65528-65547 Msa1426750:intron 40.0%
ACATTCCTCACCTTACAAGT+CGG - tig0026063:65609-65628 Msa1426750:intron 40.0%
ACCTTACAAGTCGGTTAAGA+TGG - tig0026063:65618-65637 Msa1426750:intron 40.0%
!! TCGGTTAAGATGGCTTTGTA+AGG - tig0026063:65628-65647 Msa1426750:intron 40.0%
GCTCAATAGTTATGAGCATG+AGG - tig0026063:65729-65748 Msa1426750:intron 40.0%
GCTCAATAGTTATGAGCATG+AGG - tig0026063:65729-65748 Msa1426750:intron 40.0%
! TATGAGCATGAGGAGTGTAT+TGG - tig0026063:65830-65849 Msa1426750:CDS 40.0%
CACTCATTGTAGCAAAGAGA+GGG + tig0026063:66150-66169 None:intergenic 40.0%
TCACTCATTGTAGCAAAGAG+AGG + tig0026063:66151-66170 None:intergenic 40.0%
!! TGTTCTGAGGACAATGGTTA+AGG + tig0026063:67271-67290 None:intergenic 40.0%
!!! TTGTGGTTTTGACTAATGGC+AGG - tig0026063:67413-67432 Msa1426750:intron 40.0%
AAGATCCTTATAGTAGTGCC+GGG - tig0026063:67493-67512 Msa1426750:intron 40.0%
!! CCTATCAAAGAGTCTTGTTG+CGG - tig0026063:67623-67642 Msa1426750:intron 40.0%
AAGACATACCATTGATCGCA+TGG + tig0026063:67650-67669 None:intergenic 40.0%
GAGCTAGGAAAAATAGAACG+AGG + tig0026063:67952-67971 None:intergenic 40.0%
TATTGCAGGATCCCATTGTT+TGG - tig0026063:68322-68341 Msa1426750:intron 40.0%
CGTTGTTCAATCAACCATCT+TGG + tig0026063:68374-68393 None:intergenic 40.0%
AGGTCGAGATTATTCAAGAG+TGG - tig0026063:68402-68421 Msa1426750:five_prime_UTR 40.0%
ACAACTGAGTTAAGCTCACG+AGG + tig0026063:65018-65037 None:intergenic 45.0%
!!! CGTTTTTTTTGTGGTGGTCG+AGG + tig0026063:65086-65105 None:intergenic 45.0%
ATCACGGTAACTGGATAGTC+TGG + tig0026063:65277-65296 None:intergenic 45.0%
CCACTACATATCACGGTAAC+TGG + tig0026063:65286-65305 None:intergenic 45.0%
CCAGTTACCGTGATATGTAG+TGG - tig0026063:65283-65302 Msa1426750:intron 45.0%
! TTCAGGTGTTGTGGCTTACA+AGG - tig0026063:65351-65370 Msa1426750:intron 45.0%
! TCAGGTGTTGTGGCTTACAA+GGG - tig0026063:65352-65371 Msa1426750:intron 45.0%
GTTGTGGCTTACAAGGGAAA+TGG - tig0026063:65358-65377 Msa1426750:intron 45.0%
! TATCTGAGACAGAAGTGGGT+TGG - tig0026063:65410-65429 Msa1426750:intron 45.0%
!! CTTAACCGACTTGTAAGGTG+AGG + tig0026063:65617-65636 None:intergenic 45.0%
!! GCCATCTTAACCGACTTGTA+AGG + tig0026063:65622-65641 None:intergenic 45.0%
!! AGCTTGGTGCGTGAATATGT+AGG + tig0026063:65712-65731 None:intergenic 45.0%
! TATGAGCATGAGGGGTGTAT+TGG - tig0026063:65739-65758 Msa1426750:intron 45.0%
!! TGCTTGGTGCGTGAATATGT+AGG + tig0026063:65786-65805 None:intergenic 45.0%
ACGTTCATCACCTTACAAGC+TGG - tig0026063:65911-65930 Msa1426750:intron 45.0%
! GGTCTTATAATTAGGGACGG+AGG + tig0026063:66229-66248 None:intergenic 45.0%
! GACCCTTTTGCCAAAATCAC+AGG + tig0026063:66476-66495 None:intergenic 45.0%
! ATGGTGATGCCTTTCGCTAT+AGG - tig0026063:66850-66869 Msa1426750:intron 45.0%
TGCTCTCACAGTAGTGGTTA+AGG - tig0026063:67149-67168 Msa1426750:intron 45.0%
TTAACCAGTGTCGTGTTCTG+AGG + tig0026063:67284-67303 None:intergenic 45.0%
CCGCAACAAGACTCTTTGAT+AGG + tig0026063:67626-67645 None:intergenic 45.0%
! ATTGATCTTGGTGCACTCCA+TGG - tig0026063:68440-68459 Msa1426750:five_prime_UTR 45.0%
!! TTTGGAATTTTGGTGCGCCA+TGG + tig0026063:68460-68479 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTAAAGAA+TGG - tig0026063:67672-67691 Msa1426750:intron 5.0%
AAAGTAGCGTCGCAGCCAAA+TGG - tig0026063:64879-64898 Msa1426750:CDS 50.0%
ACGGTAACTGGATAGTCTGG+AGG + tig0026063:65274-65293 None:intergenic 50.0%
!! AGACAGAAGTGGGTTGGAGA+TGG - tig0026063:65416-65435 Msa1426750:intron 50.0%
!! GCTTGGTGCGTGAATATGCT+TGG + tig0026063:65802-65821 None:intergenic 50.0%
GTAGTAATCCAATGAGGGCG+AGG + tig0026063:66955-66974 None:intergenic 50.0%
AACCAGTGCTCTCACAGTAG+TGG - tig0026063:67143-67162 Msa1426750:intron 50.0%
! AACCACTACTGTGAGAGCAC+TGG + tig0026063:67148-67167 None:intergenic 50.0%
!! GTGTCGTGTTCTGAGGACAA+TGG + tig0026063:67277-67296 None:intergenic 50.0%
TTGTCCTCAGAACACGACAC+TGG - tig0026063:67277-67296 Msa1426750:intron 50.0%
GCTTACCCGGCACTACTATA+AGG + tig0026063:67501-67520 None:intergenic 50.0%
!! AGAAGTGGGTTGGAGATGGC+AGG - tig0026063:65420-65439 Msa1426750:intron 55.0%
GTTGCGGTCCATGCGATCAA+TGG - tig0026063:67639-67658 Msa1426750:intron 55.0%
GTGTCTCACCTCGCCCTCAT+TGG - tig0026063:66944-66963 Msa1426750:intron 60.0%
Chromosome Type Strat End Strand Name
tig0026063 gene 64774 68524 64774 ID=Msa1426750;Name=Msa1426750
tig0026063 mRNA 64774 68524 64774 ID=Msa1426750-mRNA-1;Parent=Msa1426750;Name=Msa1426750-mRNA-1;_AED=0.20;_eAED=0.20;_QI=207|1|1|1|1|1|6|37|213
tig0026063 exon 64774 64968 64774 ID=Msa1426750-mRNA-1:exon:5098;Parent=Msa1426750-mRNA-1
tig0026063 exon 65638 65687 65638 ID=Msa1426750-mRNA-1:exon:5097;Parent=Msa1426750-mRNA-1
tig0026063 exon 65784 65863 65784 ID=Msa1426750-mRNA-1:exon:5096;Parent=Msa1426750-mRNA-1
tig0026063 exon 66308 66460 66308 ID=Msa1426750-mRNA-1:exon:5095;Parent=Msa1426750-mRNA-1
tig0026063 exon 67857 68100 67857 ID=Msa1426750-mRNA-1:exon:5094;Parent=Msa1426750-mRNA-1
tig0026063 exon 68361 68524 68361 ID=Msa1426750-mRNA-1:exon:5093;Parent=Msa1426750-mRNA-1
tig0026063 five_prime_UTR 68361 68524 68361 ID=Msa1426750-mRNA-1:five_prime_utr;Parent=Msa1426750-mRNA-1
tig0026063 five_prime_UTR 68058 68100 68058 ID=Msa1426750-mRNA-1:five_prime_utr;Parent=Msa1426750-mRNA-1
tig0026063 CDS 67857 68057 67857 ID=Msa1426750-mRNA-1:cds;Parent=Msa1426750-mRNA-1
tig0026063 CDS 66308 66460 66308 ID=Msa1426750-mRNA-1:cds;Parent=Msa1426750-mRNA-1
tig0026063 CDS 65784 65863 65784 ID=Msa1426750-mRNA-1:cds;Parent=Msa1426750-mRNA-1
tig0026063 CDS 65638 65687 65638 ID=Msa1426750-mRNA-1:cds;Parent=Msa1426750-mRNA-1
tig0026063 CDS 64811 64968 64811 ID=Msa1426750-mRNA-1:cds;Parent=Msa1426750-mRNA-1
tig0026063 three_prime_UTR 64774 64810 64774 ID=Msa1426750-mRNA-1:three_prime_utr;Parent=Msa1426750-mRNA-1
Gene Sequence

>Msa1426750

ATGTATACAAGTGCAGCTCAATATAATCATCCTCCAGACTATCCAGTTACCGTGATATGTAGTGGAATTGATAAAGCTTCTTTTGGAAATAATATCCTTGATAAGATATATTCAGGTGTTGTGGCTTACAAGGGAAATGGCACATGCAAAGTTAATAACCCCAAAAATATATCTGAGACAGAAGTGGGTTGGAGATGGCAGACATGCAGTGAAATGGTGATGCCTTTCGCTATAGGAAATGATACTATGTTTCAACCTTCTCCTTTTGACTTAAAGAGATTTGTGGAAAGATGCAAGAAAGAATATGGTGTCTCACCTCGCCCTCATTGGATTACTACTTATTATGGAGGCCATGATATAAAACGAGTTCTTCAAAAGTTTGGTAGCAACATTATATTTTCGAATGGACTAAAAGATCCTTATAGTAGTGCCGGGGTTTTGCACAACCTATCAAAGAGTCTTGTTGCGGTCCATGCGATCAATGGATCCCATTGTTTGGATATTCTATCTTCAAAAGAAAGTGATCCAAGATGGTTGATTGAACAACGAAATAAAGAGGTCGAGATTATTCAAGAGTGGATTGGCCAGTATTATATTGATCTTGGTGCACTCCATGGCGCACCAAAATTCCAAAACAAATGA

Protein sequence

>Msa1426750

MYTSAAQYNHPPDYPVTVICSGIDKASFGNNILDKIYSGVVAYKGNGTCKVNNPKNISETEVGWRWQTCSEMVMPFAIGNDTMFQPSPFDLKRFVERCKKEYGVSPRPHWITTYYGGHDIKRVLQKFGSNIIFSNGLKDPYSSAGVLHNLSKSLVAVHAINGSHCLDILSSKESDPRWLIEQRNKEVEIIQEWIGQYYIDLGALHGAPKFQNK*