Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202580 | XP_003595227.1 | 98.031 | 508 | 10 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1037 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202580 | sp|O82645|IQM1_ARATH | 58.350 | 509 | 161 | 7 | 21 | 503 | 1 | 484 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202580 | G7IQ65 | 98.031 | 508 | 10 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1037 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0202580 | 0.812384 | 4.357342e-51 | -8.615850e-47 |
| Msa0085290 | Msa0202580 | 0.831808 | 1.352863e-55 | -8.615850e-47 |
| Msa0194010 | Msa0202580 | 0.821443 | 4.026805e-53 | -8.615850e-47 |
| Msa0201530 | Msa0202580 | 0.811465 | 6.906646e-51 | -8.615850e-47 |
| Msa0202580 | Msa0235880 | 0.820816 | 5.616713e-53 | -8.615850e-47 |
| Msa0202580 | Msa0240270 | 0.811412 | 7.093629e-51 | -8.615850e-47 |
| Msa0202580 | Msa0244140 | 0.823215 | 1.561884e-53 | -8.615850e-47 |
| Msa0202580 | Msa0244190 | 0.827694 | 1.358274e-54 | -8.615850e-47 |
| Msa0202580 | Msa0245540 | 0.923174 | 3.756380e-89 | -8.615850e-47 |
| Msa0202580 | Msa0269810 | 0.822912 | 1.837277e-53 | -8.615850e-47 |
| Msa0202580 | Msa0322370 | 0.803321 | 3.686563e-49 | -8.615850e-47 |
| Msa0202580 | Msa0364790 | 0.803254 | 3.806105e-49 | -8.615850e-47 |
| Msa0202580 | Msa0482180 | 0.801459 | 8.914316e-49 | -8.615850e-47 |
| Msa0202580 | Msa0485490 | 0.812945 | 3.283012e-51 | -8.615850e-47 |
| Msa0202580 | Msa0524440 | 0.804821 | 1.797334e-49 | -8.615850e-47 |
| Msa0202580 | Msa0587190 | 0.804269 | 2.342414e-49 | -8.615850e-47 |
| Msa0202580 | Msa0613190 | 0.811255 | 7.670467e-51 | -8.615850e-47 |
| Msa0202580 | Msa0641340 | 0.805764 | 1.140333e-49 | -8.615850e-47 |
| Msa0202580 | Msa0679550 | 0.801130 | 1.040849e-48 | -8.615850e-47 |
| Msa0202580 | Msa0731180 | 0.807601 | 4.668306e-50 | -8.615850e-47 |
| Msa0202580 | Msa0742150 | 0.807735 | 4.371226e-50 | -8.615850e-47 |
| Msa0202580 | Msa0771580 | 0.800343 | 1.506904e-48 | -8.615850e-47 |
| Msa0202580 | Msa0786070 | 0.818455 | 1.943132e-52 | -8.615850e-47 |
| Msa0202580 | Msa0862280 | 0.801281 | 9.695036e-49 | -8.615850e-47 |
| Msa0202580 | Msa0898320 | 0.800793 | 1.220159e-48 | -8.615850e-47 |
| Msa0202580 | Msa0914290 | 0.820269 | 7.500389e-53 | -8.615850e-47 |
| Msa0202580 | Msa0952360 | 0.815924 | 7.203425e-52 | -8.615850e-47 |
| Msa0202580 | Msa0998460 | 0.806682 | 7.307293e-50 | -8.615850e-47 |
| Msa0202580 | Msa1033780 | 0.820259 | 7.538413e-53 | -8.615850e-47 |
| Msa0202580 | Msa1225100 | 0.807265 | 5.499443e-50 | -8.615850e-47 |
| Msa0202580 | Msa1246700 | 0.820724 | 5.895465e-53 | -8.615850e-47 |
| Msa0202580 | Msa1255060 | 0.809425 | 1.904105e-50 | -8.615850e-47 |
| Msa0202580 | Msa1329870 | 0.808059 | 3.730699e-50 | -8.615850e-47 |
| Msa0202580 | Msa1365270 | 0.803297 | 3.728647e-49 | -8.615850e-47 |
| Msa0202580 | Msa1376450 | 0.812090 | 5.050827e-51 | -8.615850e-47 |
| Msa0202580 | Msa1378040 | 0.818089 | 2.351390e-52 | -8.615850e-47 |
| Msa0202580 | Msa1405220 | 0.802437 | 5.611524e-49 | -8.615850e-47 |
| Msa0202580 | Msa1408180 | 0.814779 | 1.294672e-51 | -8.615850e-47 |
| Msa0202580 | Msa1408340 | 0.811159 | 8.048582e-51 | -8.615850e-47 |
| Msa0202580 | Msa1420270 | 0.800947 | 1.134844e-48 | -8.615850e-47 |
| Msa0202580 | Msa1444260 | 0.810738 | 9.930048e-51 | -8.615850e-47 |
| Msa0202580 | Msa1448980 | 0.814036 | 1.889717e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202580 | MtrunA17_Chr2g0299641 | 98.031 | 508 | 10 | 0 | 1 | 508 | 1 | 508 | 0.0 | 1037 |
| Msa0202580 | MtrunA17_Chr4g0071041 | 73.292 | 483 | 96 | 7 | 40 | 507 | 6 | 470 | 0.0 | 673 |
| Msa0202580 | MtrunA17_Chr8g0342561 | 62.673 | 434 | 146 | 3 | 74 | 507 | 84 | 501 | 0.0 | 564 |
| Msa0202580 | MtrunA17_Chr2g0330061 | 53.571 | 420 | 158 | 6 | 86 | 499 | 76 | 464 | 1.95e-151 | 441 |
| Msa0202580 | MtrunA17_Chr8g0378761 | 67.266 | 278 | 83 | 2 | 94 | 368 | 126 | 398 | 1.25e-139 | 417 |
| Msa0202580 | MtrunA17_Chr8g0378761 | 63.636 | 55 | 19 | 1 | 416 | 470 | 544 | 597 | 9.10e-14 | 73.9 |
| Msa0202580 | MtrunA17_Chr3g0121261 | 66.914 | 269 | 86 | 1 | 107 | 372 | 5 | 273 | 3.51e-136 | 395 |
| Msa0202580 | MtrunA17_Chr1g0176231 | 66.423 | 274 | 92 | 0 | 96 | 369 | 66 | 339 | 9.54e-131 | 391 |
| Msa0202580 | MtrunA17_Chr1g0176231 | 35.507 | 138 | 61 | 4 | 366 | 501 | 452 | 563 | 1.31e-13 | 73.2 |
| Msa0202580 | MtrunA17_Chr1g0178991 | 46.925 | 439 | 191 | 8 | 87 | 486 | 46 | 481 | 3.82e-123 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0202580 | AT4G33050.5 | 57.224 | 526 | 173 | 8 | 5 | 503 | 56 | 556 | 0.0 | 573 |
| Msa0202580 | AT4G33050.3 | 58.350 | 509 | 161 | 7 | 21 | 503 | 1 | 484 | 0.0 | 572 |
| Msa0202580 | AT4G33050.2 | 54.296 | 547 | 161 | 8 | 21 | 503 | 1 | 522 | 0.0 | 554 |
| Msa0202580 | AT2G26190.3 | 56.147 | 545 | 185 | 8 | 1 | 506 | 1 | 530 | 0.0 | 544 |
| Msa0202580 | AT2G26190.1 | 56.147 | 545 | 185 | 8 | 1 | 506 | 1 | 530 | 0.0 | 544 |
| Msa0202580 | AT5G57010.1 | 63.571 | 420 | 114 | 4 | 84 | 503 | 114 | 494 | 0.0 | 538 |
| Msa0202580 | AT2G26190.2 | 76.103 | 272 | 65 | 0 | 91 | 362 | 126 | 397 | 2.43e-154 | 446 |
| Msa0202580 | AT3G13600.1 | 69.004 | 271 | 79 | 2 | 104 | 369 | 108 | 378 | 9.78e-139 | 413 |
| Msa0202580 | AT3G13600.1 | 50.562 | 89 | 40 | 2 | 416 | 504 | 517 | 601 | 5.16e-17 | 84.3 |
| Msa0202580 | AT3G13600.2 | 69.004 | 271 | 79 | 2 | 104 | 369 | 108 | 378 | 9.78e-139 | 413 |
| Msa0202580 | AT3G13600.2 | 50.562 | 89 | 40 | 2 | 416 | 504 | 517 | 601 | 5.16e-17 | 84.3 |
| Msa0202580 | AT4G33050.4 | 59.524 | 336 | 109 | 4 | 21 | 330 | 1 | 335 | 5.41e-133 | 389 |
| Msa0202580 | AT3G58480.1 | 58.879 | 321 | 127 | 2 | 104 | 419 | 98 | 418 | 1.54e-132 | 396 |
| Msa0202580 | AT3G52870.1 | 48.750 | 400 | 173 | 6 | 104 | 472 | 49 | 447 | 1.95e-129 | 384 |
| Msa0202580 | AT4G33050.1 | 53.476 | 374 | 109 | 5 | 21 | 330 | 1 | 373 | 2.12e-125 | 371 |
| Msa0202580 | AT4G33050.6 | 58.366 | 257 | 80 | 4 | 21 | 251 | 1 | 256 | 1.55e-94 | 288 |
Find 154 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTTGTATTATGATATT+TGG | 0.123820 | 2_1:-25046269 | Msa0202580:CDS |
| CTCTTCTCCAAAACCTGTTT+TGG | 0.133335 | 2_1:-25047170 | Msa0202580:CDS |
| AGGCAAGTATTGAAGAAATT+AGG | 0.162948 | 2_1:-25044706 | Msa0202580:three_prime_UTR |
| TATAAACTTTGCAGGCTATT+TGG | 0.196615 | 2_1:-25045353 | Msa0202580:intron |
| TCCTTTGTTGCTCACATTAT+TGG | 0.207208 | 2_1:+25045034 | None:intergenic |
| TTCATCAAACAAATTGAAAT+TGG | 0.211861 | 2_1:-25047485 | Msa0202580:five_prime_UTR |
| GATTCATTAGTTTCAATAAA+TGG | 0.225018 | 2_1:+25045101 | None:intergenic |
| CAAACAGCAATTGGGGTTCT+TGG | 0.242705 | 2_1:+25044729 | None:intergenic |
| CAAAATCATAGCACCATCTT+TGG | 0.243712 | 2_1:+25047354 | None:intergenic |
| ATAGATATTTGTTTGTGTTT+TGG | 0.264992 | 2_1:-25044396 | Msa0202580:three_prime_UTR |
| CAACACTCTAGCTTTCTATC+TGG | 0.277196 | 2_1:-25045676 | Msa0202580:CDS |
| ATTGTTAGGCATTCACTCTT+TGG | 0.277775 | 2_1:-25047403 | Msa0202580:CDS |
| TCAAGCTCCAAAACAGGTTT+TGG | 0.284389 | 2_1:+25047163 | None:intergenic |
| ATACATTGTGTCTTAGTAAA+AGG | 0.287560 | 2_1:+25044286 | None:intergenic |
| CTTCAATTCAACTATAGTTT+TGG | 0.297565 | 2_1:-25047379 | Msa0202580:CDS |
| CTCTTGGAAAAGTCGAATAC+TGG | 0.308707 | 2_1:+25044963 | None:intergenic |
| TAATGAATCACAACAAACTA+TGG | 0.319646 | 2_1:-25045087 | Msa0202580:CDS |
| TACTGGGACCTCAAATTTCT+TGG | 0.321574 | 2_1:+25044980 | None:intergenic |
| GCCCTTGATTGAAGATGTTC+AGG | 0.324654 | 2_1:+25044882 | None:intergenic |
| GAAGAGAAAACAACTTCTTT+AGG | 0.325682 | 2_1:+25047187 | None:intergenic |
| GATGATGCTCCTTCATTCAT+TGG | 0.333793 | 2_1:-25045131 | Msa0202580:CDS |
| GGCAAGTATTGAAGAAATTA+GGG | 0.343721 | 2_1:-25044705 | Msa0202580:three_prime_UTR |
| TACTTGCCTCAAACAGCAAT+TGG | 0.345712 | 2_1:+25044720 | None:intergenic |
| CCCTAGGGCCATGAATCATT+TGG | 0.348269 | 2_1:+25044256 | None:intergenic |
| GTGTCAAGGGTAACATGTTC+TGG | 0.349098 | 2_1:+25047259 | None:intergenic |
| CGCCAGTGCATTAAATATCT+TGG | 0.351341 | 2_1:-25046037 | Msa0202580:CDS |
| CTATTCTCTTGTAGTTCATA+TGG | 0.352789 | 2_1:-25044342 | Msa0202580:three_prime_UTR |
| CTGTTGTTGTTGAGGAACTA+TGG | 0.353192 | 2_1:-25047072 | Msa0202580:intron |
| TTCTCCTAGGCTTGCATACA+TGG | 0.355525 | 2_1:-25044763 | Msa0202580:CDS |
| AACACTCTAGCTTTCTATCT+GGG | 0.360244 | 2_1:-25045675 | Msa0202580:CDS |
| TTGGCCTTGGAGAAGGTATT+GGG | 0.366036 | 2_1:+25044802 | None:intergenic |
| GGTGTGAATCTACATCTCTA+TGG | 0.373439 | 2_1:-25047464 | Msa0202580:exon |
| CTCTGAAGTTCTCTTCAGTT+GGG | 0.374129 | 2_1:+25045310 | None:intergenic |
| CTGGAGCTGGACCTCGTATT+GGG | 0.379598 | 2_1:-25044920 | Msa0202580:CDS |
| ACTGGAGCTGGACCTCGTAT+TGG | 0.380423 | 2_1:-25044921 | Msa0202580:CDS |
| CAAAATCCCTAAAAGAATAA+AGG | 0.385082 | 2_1:+25044426 | None:intergenic |
| TGAGAACAAGTTTCAACAAA+AGG | 0.385221 | 2_1:-25047333 | Msa0202580:CDS |
| GGGGCCGCAACCACAGCTGC+TGG | 0.395935 | 2_1:-25045655 | Msa0202580:CDS |
| CATCCATTGAATTCATCTAA+TGG | 0.396303 | 2_1:+25044599 | None:intergenic |
| GGTATTGGGCCATAGTTATA+TGG | 0.396779 | 2_1:+25044816 | None:intergenic |
| CTTGGCCTTGGAGAAGGTAT+TGG | 0.399325 | 2_1:+25044801 | None:intergenic |
| CTAGGAGAAATCCTAACTTT+AGG | 0.404676 | 2_1:+25044777 | None:intergenic |
| TTCTTTACTATCATCAGCTT+GGG | 0.405123 | 2_1:-25047431 | Msa0202580:CDS |
| GGGTGATAATGACCACTATA+AGG | 0.406891 | 2_1:+25045330 | None:intergenic |
| ACTTGCCTCAAACAGCAATT+GGG | 0.408107 | 2_1:+25044721 | None:intergenic |
| AAACAGCAATTGGGGTTCTT+GGG | 0.411345 | 2_1:+25044730 | None:intergenic |
| CATACAGGTTGGAAAAGGTT+TGG | 0.414229 | 2_1:-25046491 | Msa0202580:intron |
| CAAGGCCAAGTCCTAAAGTT+AGG | 0.414360 | 2_1:-25044788 | Msa0202580:CDS |
| CAGCTTGGGAAGAAATTGTT+AGG | 0.416385 | 2_1:-25047417 | Msa0202580:CDS |
| ATATGAAGTAATTGTTGAAA+AGG | 0.423105 | 2_1:-25045818 | Msa0202580:CDS |
| ATTTAATGCACTGGCGTTGA+AGG | 0.425705 | 2_1:+25046044 | None:intergenic |
| TTATCGTGCAAGTGGTCTAC+TGG | 0.433184 | 2_1:-25044939 | Msa0202580:CDS |
| TCTGCAAGACCATATAACTA+TGG | 0.434374 | 2_1:-25044825 | Msa0202580:CDS |
| TAACCATTAGATGAATTCAA+TGG | 0.434715 | 2_1:-25044602 | Msa0202580:three_prime_UTR |
| GCTAAGAACAAATATCCATT+TGG | 0.436044 | 2_1:+25045744 | None:intergenic |
| TCATTCTCCCAAATGATTCA+TGG | 0.443011 | 2_1:-25044264 | Msa0202580:three_prime_UTR |
| ATGATGCTCCTTCATTCATT+GGG | 0.444438 | 2_1:-25045130 | Msa0202580:CDS |
| TGTTATAATTGCAGAAAGAA+AGG | 0.444730 | 2_1:-25045846 | Msa0202580:intron |
| CCTAGGGCCATGAATCATTT+GGG | 0.447835 | 2_1:+25044257 | None:intergenic |
| CTAACTTTAGGACTTGGCCT+TGG | 0.449399 | 2_1:+25044789 | None:intergenic |
| CATATGAACTACAAGAGAAT+AGG | 0.450640 | 2_1:+25044343 | None:intergenic |
| TCTCTGAAGTTCTCTTCAGT+TGG | 0.451697 | 2_1:+25045309 | None:intergenic |
| ATTAGTTTCAATAAATGGAT+TGG | 0.452855 | 2_1:+25045106 | None:intergenic |
| TATGAAGTAATTGTTGAAAA+GGG | 0.453381 | 2_1:-25045817 | Msa0202580:CDS |
| GTATGTTGGAAGGAAACAAA+AGG | 0.459878 | 2_1:-25045707 | Msa0202580:CDS |
| TTTCTTTACTATCATCAGCT+TGG | 0.460682 | 2_1:-25047432 | Msa0202580:CDS |
| GCTTGATGCTGCAGCAACTA+AGG | 0.460814 | 2_1:-25047146 | Msa0202580:CDS |
| CCACTTGCACGATAATCTCT+TGG | 0.464783 | 2_1:+25044947 | None:intergenic |
| TAGAAAAGATGGAAAGTTTG+TGG | 0.467013 | 2_1:-25045782 | Msa0202580:CDS |
| ATTGATTGAGAAGTTTGAGT+AGG | 0.469055 | 2_1:+25045062 | None:intergenic |
| TTCATCAACATTTGTGTCAA+GGG | 0.476869 | 2_1:+25047246 | None:intergenic |
| GCAGCATCAAGCTCCAAAAC+AGG | 0.478310 | 2_1:+25047157 | None:intergenic |
| TCTCCTAGGCTTGCATACAT+GGG | 0.479470 | 2_1:-25044762 | Msa0202580:CDS |
| AGCAAGGACTAGAGCAGCTA+AGG | 0.483710 | 2_1:-25046613 | Msa0202580:intron |
| GCAATTGGGGTTCTTGGGCT+AGG | 0.483909 | 2_1:+25044735 | None:intergenic |
| AGAACCCCAATTGCTGTTTG+AGG | 0.487231 | 2_1:-25044726 | Msa0202580:exon |
| CTAAGGTGACACTTGAATTG+AGG | 0.487313 | 2_1:-25044529 | Msa0202580:three_prime_UTR |
| GTCCAAGATATTTAATGCAC+TGG | 0.489596 | 2_1:+25046035 | None:intergenic |
| GAAATCCTAACTTTAGGACT+TGG | 0.490790 | 2_1:+25044783 | None:intergenic |
| ATCCTGAACATCTTCAATCA+AGG | 0.491258 | 2_1:-25044884 | Msa0202580:CDS |
| CAGCTTCAAGCCAATGTTGG+AGG | 0.493190 | 2_1:+25046440 | None:intergenic |
| TGAATTGAGGATAACACAAC+TGG | 0.493674 | 2_1:-25044516 | Msa0202580:three_prime_UTR |
| CTAAAGTTAGGATTTCTCCT+AGG | 0.494756 | 2_1:-25044776 | Msa0202580:CDS |
| TGCAAGTGGTCTACTGGAGC+TGG | 0.497360 | 2_1:-25044933 | Msa0202580:CDS |
| AAGTTAGTGTATAGAAAAGA+TGG | 0.497476 | 2_1:-25045793 | Msa0202580:CDS |
| GAGAACAAGTTTCAACAAAA+GGG | 0.499003 | 2_1:-25047332 | Msa0202580:CDS |
| CACTAATCTTCCAGCAGCTG+TGG | 0.502889 | 2_1:+25045645 | None:intergenic |
| CACAGCTGCTGGAAGATTAG+TGG | 0.503574 | 2_1:-25045644 | Msa0202580:CDS |
| GTTATAATTGCAGAAAGAAA+GGG | 0.503902 | 2_1:-25045845 | Msa0202580:intron |
| CAGGCTATTTGGCCTTATAG+TGG | 0.505306 | 2_1:-25045342 | Msa0202580:CDS |
| TTTCATCAACATTTGTGTCA+AGG | 0.510168 | 2_1:+25047245 | None:intergenic |
| GGTCTTGCAGAAGCAGGTCT+AGG | 0.511439 | 2_1:+25044837 | None:intergenic |
| TTAGGACTTGGCCTTGGAGA+AGG | 0.514171 | 2_1:+25044795 | None:intergenic |
| ACCACTAGGGCTTTGTATGT+TGG | 0.515347 | 2_1:-25045721 | Msa0202580:CDS |
| TGGCGTTGAAGGGTAGCCCT+TGG | 0.518338 | 2_1:+25046055 | None:intergenic |
| TGATGAAAACTTGAAACATA+AGG | 0.518550 | 2_1:-25047230 | Msa0202580:CDS |
| GGTTAATGCCAAGAAATTTG+AGG | 0.520668 | 2_1:-25044988 | Msa0202580:CDS |
| ACCAATAATGTGAGCAACAA+AGG | 0.523579 | 2_1:-25045035 | Msa0202580:CDS |
| ACATCTTCAATCAAGGGCAT+TGG | 0.526183 | 2_1:-25044877 | Msa0202580:CDS |
| AGAATTTGTTAGCTTTCTTG+AGG | 0.528950 | 2_1:-25045289 | Msa0202580:CDS |
| TTATATGGTCTTGCAGAAGC+AGG | 0.529498 | 2_1:+25044831 | None:intergenic |
| AGACTGATGAAAAGTCCAAA+TGG | 0.530334 | 2_1:-25045759 | Msa0202580:CDS |
| TTGATTGAGAAGTTTGAGTA+GGG | 0.533972 | 2_1:+25045063 | None:intergenic |
| GTGTGAATCTACATCTCTAT+GGG | 0.537392 | 2_1:-25047463 | Msa0202580:exon |
| TTACAGCTTCAAGCCAATGT+TGG | 0.537705 | 2_1:+25046437 | None:intergenic |
| CCCAAATGATTCATGGCCCT+AGG | 0.538191 | 2_1:-25044257 | Msa0202580:three_prime_UTR |
| CCAAATGATTCATGGCCCTA+GGG | 0.542341 | 2_1:-25044256 | Msa0202580:three_prime_UTR |
| TGATTGTGCTGTTGTTGTTG+AGG | 0.543569 | 2_1:-25047080 | Msa0202580:CDS |
| CCAAGAGATTATCGTGCAAG+TGG | 0.544662 | 2_1:-25044947 | Msa0202580:CDS |
| TGTAGGTTGGATGTTGGAGA+TGG | 0.548321 | 2_1:-25046103 | Msa0202580:intron |
| TCTTCCAGCAGCTGTGGTTG+CGG | 0.548897 | 2_1:+25045651 | None:intergenic |
| TATTTGTTCTTAGCACCACT+AGG | 0.553975 | 2_1:-25045735 | Msa0202580:CDS |
| CTTGCCTCAAACAGCAATTG+GGG | 0.561115 | 2_1:+25044722 | None:intergenic |
| CTTCATAAGCTCAACAACAA+AGG | 0.562349 | 2_1:-25047798 | Msa0202580:intron |
| TCTTGGAAAAGTCGAATACT+GGG | 0.564105 | 2_1:+25044964 | None:intergenic |
| TGACTTCTGACTACTGAAGT+AGG | 0.564894 | 2_1:-25044578 | Msa0202580:three_prime_UTR |
| ATTGACCCACGTCATCGCTA+TGG | 0.565300 | 2_1:-25046300 | Msa0202580:CDS |
| AGCTTCAAGCCAATGTTGGA+GGG | 0.566073 | 2_1:+25046441 | None:intergenic |
| CTAGGGCTTTGTATGTTGGA+AGG | 0.566948 | 2_1:-25045717 | Msa0202580:CDS |
| GATATGAAGGTGGAAAGCAT+TGG | 0.567332 | 2_1:-25046715 | Msa0202580:intron |
| AGAAACTGCAGTGTCAAGGT+GGG | 0.571406 | 2_1:-25046640 | Msa0202580:CDS |
| GGATTGGTCCCAATGAATGA+AGG | 0.573929 | 2_1:+25045122 | None:intergenic |
| CTTTCTTGAGGAGCACAAAG+TGG | 0.581632 | 2_1:-25045277 | Msa0202580:CDS |
| TCCTGAACATCTTCAATCAA+GGG | 0.582807 | 2_1:-25044883 | Msa0202580:CDS |
| TATGTTGGAAGGAAACAAAA+GGG | 0.583609 | 2_1:-25045706 | Msa0202580:CDS |
| TTTAATGCACTGGCGTTGAA+GGG | 0.586946 | 2_1:+25046045 | None:intergenic |
| AACAAGAAACTGCAGTGTCA+AGG | 0.588506 | 2_1:-25046644 | Msa0202580:CDS |
| ATTTGTTCTTAGCACCACTA+GGG | 0.589990 | 2_1:-25045734 | Msa0202580:CDS |
| CAAACGTTGGATTCATCGAA+TGG | 0.594122 | 2_1:-25044643 | Msa0202580:three_prime_UTR |
| CAAAATTAATAATGCAACAG+AGG | 0.596595 | 2_1:-25045009 | Msa0202580:CDS |
| GGTTGGAAAAGGTTTGGCCA+AGG | 0.600406 | 2_1:-25046485 | Msa0202580:CDS |
| TTAATCTTGAGAAATGTCCA+AGG | 0.602258 | 2_1:-25046072 | Msa0202580:CDS |
| CTCCTAGGCTTGCATACATG+GGG | 0.604327 | 2_1:-25044761 | Msa0202580:CDS |
| AGGTTTGGCCAAGGATGACA+AGG | 0.605249 | 2_1:-25046476 | Msa0202580:CDS |
| TTGTGTCCATAGCGATGACG+TGG | 0.606284 | 2_1:+25046294 | None:intergenic |
| AAGAAACTGCAGTGTCAAGG+TGG | 0.608522 | 2_1:-25046641 | Msa0202580:CDS |
| TCGGAGAGAATCTAGTGCAT+AGG | 0.609510 | 2_1:+25044674 | None:intergenic |
| ACACTCTAGCTTTCTATCTG+GGG | 0.613665 | 2_1:-25045674 | Msa0202580:CDS |
| TCTGACTACTGAAGTAGGAG+AGG | 0.626375 | 2_1:-25044573 | Msa0202580:three_prime_UTR |
| AGCCCCATGTATGCAAGCCT+AGG | 0.635290 | 2_1:+25044759 | None:intergenic |
| AGTGGACCTCTCTAATGTCA+AGG | 0.638394 | 2_1:-25045259 | Msa0202580:intron |
| AATTCACCTTGACATTAGAG+AGG | 0.640988 | 2_1:+25045253 | None:intergenic |
| TGTCAAGGTGGGGAAGAGCA+AGG | 0.642133 | 2_1:-25046629 | Msa0202580:CDS |
| GAAACTGCAGTGTCAAGGTG+GGG | 0.643986 | 2_1:-25046639 | Msa0202580:CDS |
| ATGGCCCAATACCTTCTCCA+AGG | 0.644628 | 2_1:-25044806 | Msa0202580:CDS |
| TCTTTAGGCAAAGAAAGCAA+CGG | 0.647442 | 2_1:+25047202 | None:intergenic |
| GGAAGATTAGTGGCACAACA+AGG | 0.648672 | 2_1:-25045634 | Msa0202580:CDS |
| TCCAACGTTTGATCTCTGAT+CGG | 0.656772 | 2_1:+25044655 | None:intergenic |
| TAATCTTGAGAAATGTCCAA+GGG | 0.660398 | 2_1:-25046071 | Msa0202580:CDS |
| TCCAACATACAAAGCCCTAG+TGG | 0.663510 | 2_1:+25045720 | None:intergenic |
| TCCGATCAGAGATCAAACGT+TGG | 0.682220 | 2_1:-25044656 | Msa0202580:three_prime_UTR |
| GGCACAACAAGGTGTACTCG+AGG | 0.687576 | 2_1:-25045623 | Msa0202580:intron |
| TCACGCACACACCCAATACG+AGG | 0.694431 | 2_1:+25044909 | None:intergenic |
| TGTGTCCATAGCGATGACGT+GGG | 0.734536 | 2_1:+25046295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTATAATATTATATT+AGG | + | chr2_1:25045697-25045716 | None:intergenic | 0.0% |
| !!! | TAATTTATTATTTTATTTTT+GGG | - | chr2_1:25047632-25047651 | Msa0202580:intron | 0.0% |
| !!! | ATTTTTTCTTATATTCTTTT+TGG | - | chr2_1:25044356-25044375 | Msa0202580:three_prime_UTR | 10.0% |
| !! | TTGAACAAAAAAAAATATTA+AGG | - | chr2_1:25044439-25044458 | Msa0202580:three_prime_UTR | 10.0% |
| !! | AAATTAAATTGAATTTGAAA+TGG | + | chr2_1:25045518-25045537 | None:intergenic | 10.0% |
| !!! | TATTTGTTATTTCATTTTTA+AGG | - | chr2_1:25045562-25045581 | Msa0202580:intron | 10.0% |
| !! | AAAATTTCATTGAAAGTAAA+GGG | + | chr2_1:25044341-25044360 | None:intergenic | 15.0% |
| !! | AAAAATTTCATTGAAAGTAA+AGG | + | chr2_1:25044342-25044361 | None:intergenic | 15.0% |
| !!! | TATACGAATTTTGATAATTT+TGG | - | chr2_1:25045126-25045145 | Msa0202580:CDS | 15.0% |
| !! | TATAATTTAAGAGAGTAAAT+TGG | - | chr2_1:25045296-25045315 | Msa0202580:CDS | 15.0% |
| !!! | GTTTTTTGTATGTTATTAAA+TGG | - | chr2_1:25045348-25045367 | Msa0202580:intron | 15.0% |
| !! | TGAAAAATAAAAATTAGCAA+AGG | + | chr2_1:25045590-25045609 | None:intergenic | 15.0% |
| !!! | CTAATTTTTATTTTTCATAC+AGG | - | chr2_1:25045593-25045612 | Msa0202580:intron | 15.0% |
| !! | ATTAGATTATATACTATCAT+CGG | + | chr2_1:25046221-25046240 | None:intergenic | 15.0% |
| !!! | ATTATTTTATTTTTGGGTTT+TGG | - | chr2_1:25047638-25047657 | Msa0202580:intron | 15.0% |
| !!! | ATTATTCCTTTATTCTTTTA+GGG | - | chr2_1:25047667-25047686 | Msa0202580:intron | 15.0% |
| !!! | TTCTATTGTTTTTTTTTAAG+AGG | - | chr2_1:25047732-25047751 | Msa0202580:intron | 15.0% |
| !! | TTCATCAAACAAATTGAAAT+TGG | - | chr2_1:25044614-25044633 | Msa0202580:three_prime_UTR | 20.0% |
| !! | TTTGTATGTTATTAAATGGA+TGG | - | chr2_1:25045352-25045371 | Msa0202580:intron | 20.0% |
| !!! | ATGGTTTTTAAATGATATGA+AGG | - | chr2_1:25045371-25045390 | Msa0202580:intron | 20.0% |
| !!! | TTTTTATTTTTCATACAGGT+TGG | - | chr2_1:25045597-25045616 | Msa0202580:intron | 20.0% |
| !! | TCAATAAGATATAGATGATT+AGG | + | chr2_1:25045913-25045932 | None:intergenic | 20.0% |
| !!! | TTTTAAGTATATATCGAACT+CGG | - | chr2_1:25046139-25046158 | Msa0202580:intron | 20.0% |
| !! | TTAGATTATATACTATCATC+GGG | + | chr2_1:25046220-25046239 | None:intergenic | 20.0% |
| !! | ATATGAAGTAATTGTTGAAA+AGG | - | chr2_1:25046281-25046300 | Msa0202580:CDS | 20.0% |
| !! | TATGAAGTAATTGTTGAAAA+GGG | - | chr2_1:25046282-25046301 | Msa0202580:CDS | 20.0% |
| !! | ATTCAGGTCAATTAAAAAAA+CGG | + | chr2_1:25046515-25046534 | None:intergenic | 20.0% |
| !! | TGTAATATAATGAAAACACA+TGG | + | chr2_1:25046675-25046694 | None:intergenic | 20.0% |
| !! | TAGTGAACAAAAAAGTAAAT+TGG | - | chr2_1:25046885-25046904 | Msa0202580:intron | 20.0% |
| !!! | ATTAGTTTCAATAAATGGAT+TGG | + | chr2_1:25046996-25047015 | None:intergenic | 20.0% |
| !!! | GATTCATTAGTTTCAATAAA+TGG | + | chr2_1:25047001-25047020 | None:intergenic | 20.0% |
| !!! | GATTATTCCTTTATTCTTTT+AGG | - | chr2_1:25047666-25047685 | Msa0202580:intron | 20.0% |
| !!! | ATAGATATTTGTTTGTGTTT+TGG | - | chr2_1:25047703-25047722 | Msa0202580:intron | 20.0% |
| !!! | ATGTTTTATTTCCTTCAAAA+AGG | + | chr2_1:25047785-25047804 | None:intergenic | 20.0% |
| ! | CACTTATGAAATAGAACAAT+TGG | + | chr2_1:25044472-25044491 | None:intergenic | 25.0% |
| !! | CAGAAAATTTGACTTATGTA+TGG | - | chr2_1:25044530-25044549 | Msa0202580:three_prime_UTR | 25.0% |
| ! | GGTTTATATGTAATTTGAAC+AGG | - | chr2_1:25044566-25044585 | Msa0202580:three_prime_UTR | 25.0% |
| !! | CTTCAATTCAACTATAGTTT+TGG | - | chr2_1:25044720-25044739 | Msa0202580:exon | 25.0% |
| ! | TGATGAAAACTTGAAACATA+AGG | - | chr2_1:25044869-25044888 | Msa0202580:CDS | 25.0% |
| !! | TTTAGTCTTTAATATTGTCC+CGG | - | chr2_1:25045209-25045228 | Msa0202580:intron | 25.0% |
| !! | ATTTTCTATCACAAGTTTTC+CGG | + | chr2_1:25045231-25045250 | None:intergenic | 25.0% |
| !! | GTTTTTAAATGATATGAAGG+TGG | - | chr2_1:25045374-25045393 | Msa0202580:intron | 25.0% |
| ! | TGCACTTGTATTATGATATT+TGG | - | chr2_1:25045830-25045849 | Msa0202580:CDS | 25.0% |
| ! | AAAGCTTACCAATAGAAAAA+TGG | + | chr2_1:25045877-25045896 | None:intergenic | 25.0% |
| ! | TATAGATGATTAGGTACTAT+AGG | + | chr2_1:25045904-25045923 | None:intergenic | 25.0% |
| ! | ATGAAGCTAGTAAAAACTAT+TGG | - | chr2_1:25045946-25045965 | Msa0202580:intron | 25.0% |
| !!! | CTTGATGGTAAATTTTTTGT+AGG | - | chr2_1:25045979-25045998 | Msa0202580:intron | 25.0% |
| !!! | ATGGTAAATTTTTTGTAGGT+TGG | - | chr2_1:25045983-25046002 | Msa0202580:intron | 25.0% |
| ! | ATAATCTACTGATAACTTAC+TGG | + | chr2_1:25046089-25046108 | None:intergenic | 25.0% |
| ! | TAGATTATATACTATCATCG+GGG | + | chr2_1:25046219-25046238 | None:intergenic | 25.0% |
| ! | TGTTATAATTGCAGAAAGAA+AGG | - | chr2_1:25046253-25046272 | Msa0202580:CDS | 25.0% |
| ! | GTTATAATTGCAGAAAGAAA+GGG | - | chr2_1:25046254-25046273 | Msa0202580:CDS | 25.0% |
| ! | AAGTTAGTGTATAGAAAAGA+TGG | - | chr2_1:25046306-25046325 | Msa0202580:intron | 25.0% |
| ! | GTTTATTGTATAAACTTTGC+AGG | - | chr2_1:25046738-25046757 | Msa0202580:intron | 25.0% |
| ! | TAATGAATCACAACAAACTA+TGG | - | chr2_1:25047012-25047031 | Msa0202580:intron | 25.0% |
| ! | CAAAATTAATAATGCAACAG+AGG | - | chr2_1:25047090-25047109 | Msa0202580:CDS | 25.0% |
| ! | TAACCATTAGATGAATTCAA+TGG | - | chr2_1:25047497-25047516 | Msa0202580:five_prime_UTR | 25.0% |
| !! | CTTAGTTAACAATTTTTGTG+AGG | + | chr2_1:25047555-25047574 | None:intergenic | 25.0% |
| ! | CTCACAAAAATTGTTAACTA+AGG | - | chr2_1:25047553-25047572 | Msa0202580:intron | 25.0% |
| ! | CAAAATCCCTAAAAGAATAA+AGG | + | chr2_1:25047676-25047695 | None:intergenic | 25.0% |
| !!! | CTTTATTCTTTTAGGGATTT+TGG | - | chr2_1:25047674-25047693 | Msa0202580:intron | 25.0% |
| ! | ATACATTGTGTCTTAGTAAA+AGG | + | chr2_1:25047816-25047835 | None:intergenic | 25.0% |
| ATGTATGGTTTGATTAACGA+TGG | - | chr2_1:25044545-25044564 | Msa0202580:three_prime_UTR | 30.0% | |
| TTTCTTTACTATCATCAGCT+TGG | - | chr2_1:25044667-25044686 | Msa0202580:three_prime_UTR | 30.0% | |
| TTCTTTACTATCATCAGCTT+GGG | - | chr2_1:25044668-25044687 | Msa0202580:three_prime_UTR | 30.0% | |
| !!! | TATAGTTTTGGTTCCAAAGA+TGG | - | chr2_1:25044732-25044751 | Msa0202580:CDS | 30.0% |
| TGAGAACAAGTTTCAACAAA+AGG | - | chr2_1:25044766-25044785 | Msa0202580:CDS | 30.0% | |
| GAGAACAAGTTTCAACAAAA+GGG | - | chr2_1:25044767-25044786 | Msa0202580:CDS | 30.0% | |
| ! | TCTAACCTAGTTGAACTTTT+TGG | + | chr2_1:25044810-25044829 | None:intergenic | 30.0% |
| AAAAAGTTCAACTAGGTTAG+AGG | - | chr2_1:25044809-25044828 | Msa0202580:CDS | 30.0% | |
| TTCATCAACATTTGTGTCAA+GGG | + | chr2_1:25044856-25044875 | None:intergenic | 30.0% | |
| TTTCATCAACATTTGTGTCA+AGG | + | chr2_1:25044857-25044876 | None:intergenic | 30.0% | |
| GAAGAGAAAACAACTTCTTT+AGG | + | chr2_1:25044915-25044934 | None:intergenic | 30.0% | |
| ! | TTTTCTATCACAAGTTTTCC+GGG | + | chr2_1:25045230-25045249 | None:intergenic | 30.0% |
| !! | TTTTTCATACAGGTTGGAAA+AGG | - | chr2_1:25045603-25045622 | Msa0202580:intron | 30.0% |
| AGAAAAATGGTTGAGTACTT+TGG | + | chr2_1:25045864-25045883 | None:intergenic | 30.0% | |
| !! | GTACTCAACCATTTTTCTAT+TGG | - | chr2_1:25045866-25045885 | Msa0202580:intron | 30.0% |
| !!! | ATTTTTTGTAGGTTGGATGT+TGG | - | chr2_1:25045990-25046009 | Msa0202580:intron | 30.0% |
| TTAATCTTGAGAAATGTCCA+AGG | - | chr2_1:25046027-25046046 | Msa0202580:intron | 30.0% | |
| TAATCTTGAGAAATGTCCAA+GGG | - | chr2_1:25046028-25046047 | Msa0202580:intron | 30.0% | |
| TAGAAAAGATGGAAAGTTTG+TGG | - | chr2_1:25046317-25046336 | Msa0202580:intron | 30.0% | |
| GCTAAGAACAAATATCCATT+TGG | + | chr2_1:25046358-25046377 | None:intergenic | 30.0% | |
| TATGTTGGAAGGAAACAAAA+GGG | - | chr2_1:25046393-25046412 | Msa0202580:intron | 30.0% | |
| TTTACAACTTCAACGAATTC+AGG | + | chr2_1:25046531-25046550 | None:intergenic | 30.0% | |
| AAGTTGTAAATCTTAACCGT+TGG | - | chr2_1:25046541-25046560 | Msa0202580:intron | 30.0% | |
| TATAAACTTTGCAGGCTATT+TGG | - | chr2_1:25046746-25046765 | Msa0202580:intron | 30.0% | |
| !! | AGAATTTGTTAGCTTTCTTG+AGG | - | chr2_1:25046810-25046829 | Msa0202580:intron | 30.0% |
| ! | ATAGCATATCTCTGAAAAGA+GGG | + | chr2_1:25046944-25046963 | None:intergenic | 30.0% |
| ! | TATAGCATATCTCTGAAAAG+AGG | + | chr2_1:25046945-25046964 | None:intergenic | 30.0% |
| TTGATTGAGAAGTTTGAGTA+GGG | + | chr2_1:25047039-25047058 | None:intergenic | 30.0% | |
| ATTGATTGAGAAGTTTGAGT+AGG | + | chr2_1:25047040-25047059 | None:intergenic | 30.0% | |
| !! | AGGCAAGTATTGAAGAAATT+AGG | - | chr2_1:25047393-25047412 | Msa0202580:CDS | 30.0% |
| !! | GGCAAGTATTGAAGAAATTA+GGG | - | chr2_1:25047394-25047413 | Msa0202580:CDS | 30.0% |
| CATCCATTGAATTCATCTAA+TGG | + | chr2_1:25047503-25047522 | None:intergenic | 30.0% | |
| CATATGAACTACAAGAGAAT+AGG | + | chr2_1:25047759-25047778 | None:intergenic | 30.0% | |
| CTATTCTCTTGTAGTTCATA+TGG | - | chr2_1:25047757-25047776 | Msa0202580:intron | 30.0% | |
| ! | TTCATATGGAACCTTTTTGA+AGG | - | chr2_1:25047771-25047790 | Msa0202580:intron | 30.0% |
| CTTCATAAGCTCAACAACAA+AGG | - | chr2_1:25044301-25044320 | Msa0202580:three_prime_UTR | 35.0% | |
| GTGTGAATCTACATCTCTAT+GGG | - | chr2_1:25044636-25044655 | Msa0202580:three_prime_UTR | 35.0% | |
| ATTGTTAGGCATTCACTCTT+TGG | - | chr2_1:25044696-25044715 | Msa0202580:three_prime_UTR | 35.0% | |
| CAAAATCATAGCACCATCTT+TGG | + | chr2_1:25044748-25044767 | None:intergenic | 35.0% | |
| CAACACCAAAAAGTTCAACT+AGG | - | chr2_1:25044802-25044821 | Msa0202580:CDS | 35.0% | |
| TCTTTAGGCAAAGAAAGCAA+CGG | + | chr2_1:25044900-25044919 | None:intergenic | 35.0% | |
| AAAAATTAGCCCTCCAACAT+TGG | - | chr2_1:25045649-25045668 | Msa0202580:CDS | 35.0% | |
| ATTGGAGCTGATAATCTTGA+TGG | - | chr2_1:25045964-25045983 | Msa0202580:intron | 35.0% | |
| GTCCAAGATATTTAATGCAC+TGG | + | chr2_1:25046067-25046086 | None:intergenic | 35.0% | |
| TCTGACTATTATAAACCCTG+AGG | + | chr2_1:25046167-25046186 | None:intergenic | 35.0% | |
| AGACTGATGAAAAGTCCAAA+TGG | - | chr2_1:25046340-25046359 | Msa0202580:intron | 35.0% | |
| TATTTGTTCTTAGCACCACT+AGG | - | chr2_1:25046364-25046383 | Msa0202580:intron | 35.0% | |
| ATTTGTTCTTAGCACCACTA+GGG | - | chr2_1:25046365-25046384 | Msa0202580:intron | 35.0% | |
| GTATGTTGGAAGGAAACAAA+AGG | - | chr2_1:25046392-25046411 | Msa0202580:intron | 35.0% | |
| !! | AACACTCTAGCTTTCTATCT+GGG | - | chr2_1:25046424-25046443 | Msa0202580:intron | 35.0% |
| AATTCACCTTGACATTAGAG+AGG | + | chr2_1:25046849-25046868 | None:intergenic | 35.0% | |
| ATGATGCTCCTTCATTCATT+GGG | - | chr2_1:25046969-25046988 | Msa0202580:intron | 35.0% | |
| ACCAATAATGTGAGCAACAA+AGG | - | chr2_1:25047064-25047083 | Msa0202580:intron | 35.0% | |
| TCCTTTGTTGCTCACATTAT+TGG | + | chr2_1:25047068-25047087 | None:intergenic | 35.0% | |
| GGTTAATGCCAAGAAATTTG+AGG | - | chr2_1:25047111-25047130 | Msa0202580:CDS | 35.0% | |
| TCTTGGAAAAGTCGAATACT+GGG | + | chr2_1:25047138-25047157 | None:intergenic | 35.0% | |
| ATCCTGAACATCTTCAATCA+AGG | - | chr2_1:25047215-25047234 | Msa0202580:CDS | 35.0% | |
| TCCTGAACATCTTCAATCAA+GGG | - | chr2_1:25047216-25047235 | Msa0202580:CDS | 35.0% | |
| TCTGCAAGACCATATAACTA+TGG | - | chr2_1:25047274-25047293 | Msa0202580:CDS | 35.0% | |
| !! | GAAATCCTAACTTTAGGACT+TGG | + | chr2_1:25047319-25047338 | None:intergenic | 35.0% |
| CTAGGAGAAATCCTAACTTT+AGG | + | chr2_1:25047325-25047344 | None:intergenic | 35.0% | |
| CTAAAGTTAGGATTTCTCCT+AGG | - | chr2_1:25047323-25047342 | Msa0202580:CDS | 35.0% | |
| TGAATTGAGGATAACACAAC+TGG | - | chr2_1:25047583-25047602 | Msa0202580:intron | 35.0% | |
| TCATTCTCCCAAATGATTCA+TGG | - | chr2_1:25047835-25047854 | Msa0202580:five_prime_UTR | 35.0% | |
| GGTGTGAATCTACATCTCTA+TGG | - | chr2_1:25044635-25044654 | Msa0202580:three_prime_UTR | 40.0% | |
| CAGCTTGGGAAGAAATTGTT+AGG | - | chr2_1:25044682-25044701 | Msa0202580:three_prime_UTR | 40.0% | |
| ! | CTCTTCTCCAAAACCTGTTT+TGG | - | chr2_1:25044929-25044948 | Msa0202580:CDS | 40.0% |
| ! | TCAAGCTCCAAAACAGGTTT+TGG | + | chr2_1:25044939-25044958 | None:intergenic | 40.0% |
| ! | TGATTGTGCTGTTGTTGTTG+AGG | - | chr2_1:25045019-25045038 | Msa0202580:CDS | 40.0% |
| ! | CTGTTGTTGTTGAGGAACTA+TGG | - | chr2_1:25045027-25045046 | Msa0202580:CDS | 40.0% |
| ! | GATATGAAGGTGGAAAGCAT+TGG | - | chr2_1:25045384-25045403 | Msa0202580:intron | 40.0% |
| AACAAGAAACTGCAGTGTCA+AGG | - | chr2_1:25045455-25045474 | Msa0202580:intron | 40.0% | |
| ! | CATACAGGTTGGAAAAGGTT+TGG | - | chr2_1:25045608-25045627 | Msa0202580:intron | 40.0% |
| ! | TTTTTGTGCCTTGTCATCCT+TGG | + | chr2_1:25045634-25045653 | None:intergenic | 40.0% |
| TTACAGCTTCAAGCCAATGT+TGG | + | chr2_1:25045665-25045684 | None:intergenic | 40.0% | |
| ! | TTTAATGCACTGGCGTTGAA+GGG | + | chr2_1:25046057-25046076 | None:intergenic | 40.0% |
| ! | ATTTAATGCACTGGCGTTGA+AGG | + | chr2_1:25046058-25046077 | None:intergenic | 40.0% |
| CGCCAGTGCATTAAATATCT+TGG | - | chr2_1:25046062-25046081 | Msa0202580:CDS | 40.0% | |
| !! | CAACACTCTAGCTTTCTATC+TGG | - | chr2_1:25046423-25046442 | Msa0202580:intron | 40.0% |
| !! | ACACTCTAGCTTTCTATCTG+GGG | - | chr2_1:25046425-25046444 | Msa0202580:intron | 40.0% |
| ATCATCTGATCGTCATCCAA+CGG | + | chr2_1:25046560-25046579 | None:intergenic | 40.0% | |
| GAATCTTGACCGTCAGATAA+AGG | + | chr2_1:25046643-25046662 | None:intergenic | 40.0% | |
| ! | GGGTGATAATGACCACTATA+AGG | + | chr2_1:25046772-25046791 | None:intergenic | 40.0% |
| !! | CTCTGAAGTTCTCTTCAGTT+GGG | + | chr2_1:25046792-25046811 | None:intergenic | 40.0% |
| !! | TCTCTGAAGTTCTCTTCAGT+TGG | + | chr2_1:25046793-25046812 | None:intergenic | 40.0% |
| GATGATGCTCCTTCATTCAT+TGG | - | chr2_1:25046968-25046987 | Msa0202580:intron | 40.0% | |
| TACTGGGACCTCAAATTTCT+TGG | + | chr2_1:25047122-25047141 | None:intergenic | 40.0% | |
| CTCTTGGAAAAGTCGAATAC+TGG | + | chr2_1:25047139-25047158 | None:intergenic | 40.0% | |
| ! | ACATCTTCAATCAAGGGCAT+TGG | - | chr2_1:25047222-25047241 | Msa0202580:CDS | 40.0% |
| ! | TTATATGGTCTTGCAGAAGC+AGG | + | chr2_1:25047271-25047290 | None:intergenic | 40.0% |
| ! | GGTATTGGGCCATAGTTATA+TGG | + | chr2_1:25047286-25047305 | None:intergenic | 40.0% |
| AAACAGCAATTGGGGTTCTT+GGG | + | chr2_1:25047372-25047391 | None:intergenic | 40.0% | |
| ACTTGCCTCAAACAGCAATT+GGG | + | chr2_1:25047381-25047400 | None:intergenic | 40.0% | |
| TACTTGCCTCAAACAGCAAT+TGG | + | chr2_1:25047382-25047401 | None:intergenic | 40.0% | |
| TCCAACGTTTGATCTCTGAT+CGG | + | chr2_1:25047447-25047466 | None:intergenic | 40.0% | |
| CAAACGTTGGATTCATCGAA+TGG | - | chr2_1:25047456-25047475 | Msa0202580:exon | 40.0% | |
| TGACTTCTGACTACTGAAGT+AGG | - | chr2_1:25047521-25047540 | Msa0202580:intron | 40.0% | |
| CTAAGGTGACACTTGAATTG+AGG | - | chr2_1:25047570-25047589 | Msa0202580:intron | 40.0% | |
| GTGTCAAGGGTAACATGTTC+TGG | + | chr2_1:25044843-25044862 | None:intergenic | 45.0% | |
| AAGAAACTGCAGTGTCAAGG+TGG | - | chr2_1:25045458-25045477 | Msa0202580:intron | 45.0% | |
| AGAAACTGCAGTGTCAAGGT+GGG | - | chr2_1:25045459-25045478 | Msa0202580:intron | 45.0% | |
| AGCTTCAAGCCAATGTTGGA+GGG | + | chr2_1:25045661-25045680 | None:intergenic | 45.0% | |
| ! | TGTAGGTTGGATGTTGGAGA+TGG | - | chr2_1:25045996-25046015 | Msa0202580:intron | 45.0% |
| TATATCGAACTCGGTACCTC+AGG | - | chr2_1:25046148-25046167 | Msa0202580:intron | 45.0% | |
| ATATCGAACTCGGTACCTCA+GGG | - | chr2_1:25046149-25046168 | Msa0202580:intron | 45.0% | |
| ! | ACCACTAGGGCTTTGTATGT+TGG | - | chr2_1:25046378-25046397 | Msa0202580:intron | 45.0% |
| TCCAACATACAAAGCCCTAG+TGG | + | chr2_1:25046382-25046401 | None:intergenic | 45.0% | |
| ! | CTAGGGCTTTGTATGTTGGA+AGG | - | chr2_1:25046382-25046401 | Msa0202580:intron | 45.0% |
| GGAAGATTAGTGGCACAACA+AGG | - | chr2_1:25046465-25046484 | Msa0202580:CDS | 45.0% | |
| ATTGCCCGACCTTTATCTGA+CGG | - | chr2_1:25046631-25046650 | Msa0202580:CDS | 45.0% | |
| TTGACCGTCAGATAAAGGTC+GGG | + | chr2_1:25046638-25046657 | None:intergenic | 45.0% | |
| CTTGACCGTCAGATAAAGGT+CGG | + | chr2_1:25046639-25046658 | None:intergenic | 45.0% | |
| !! | CAGGCTATTTGGCCTTATAG+TGG | - | chr2_1:25046757-25046776 | Msa0202580:intron | 45.0% |
| ! | CTTTCTTGAGGAGCACAAAG+TGG | - | chr2_1:25046822-25046841 | Msa0202580:intron | 45.0% |
| AGTGGACCTCTCTAATGTCA+AGG | - | chr2_1:25046840-25046859 | Msa0202580:intron | 45.0% | |
| !! | GGATTGGTCCCAATGAATGA+AGG | + | chr2_1:25046980-25046999 | None:intergenic | 45.0% |
| CCACTTGCACGATAATCTCT+TGG | + | chr2_1:25047155-25047174 | None:intergenic | 45.0% | |
| CCAAGAGATTATCGTGCAAG+TGG | - | chr2_1:25047152-25047171 | Msa0202580:CDS | 45.0% | |
| TTATCGTGCAAGTGGTCTAC+TGG | - | chr2_1:25047160-25047179 | Msa0202580:CDS | 45.0% | |
| GCCCTTGATTGAAGATGTTC+AGG | + | chr2_1:25047220-25047239 | None:intergenic | 45.0% | |
| !! | TTGGCCTTGGAGAAGGTATT+GGG | + | chr2_1:25047300-25047319 | None:intergenic | 45.0% |
| !! | CTAACTTTAGGACTTGGCCT+TGG | + | chr2_1:25047313-25047332 | None:intergenic | 45.0% |
| CAAGGCCAAGTCCTAAAGTT+AGG | - | chr2_1:25047311-25047330 | Msa0202580:CDS | 45.0% | |
| TTCTCCTAGGCTTGCATACA+TGG | - | chr2_1:25047336-25047355 | Msa0202580:CDS | 45.0% | |
| TCTCCTAGGCTTGCATACAT+GGG | - | chr2_1:25047337-25047356 | Msa0202580:CDS | 45.0% | |
| CAAACAGCAATTGGGGTTCT+TGG | + | chr2_1:25047373-25047392 | None:intergenic | 45.0% | |
| !! | AGAACCCCAATTGCTGTTTG+AGG | - | chr2_1:25047373-25047392 | Msa0202580:CDS | 45.0% |
| CTTGCCTCAAACAGCAATTG+GGG | + | chr2_1:25047380-25047399 | None:intergenic | 45.0% | |
| TCGGAGAGAATCTAGTGCAT+AGG | + | chr2_1:25047428-25047447 | None:intergenic | 45.0% | |
| TCCGATCAGAGATCAAACGT+TGG | - | chr2_1:25047443-25047462 | Msa0202580:CDS | 45.0% | |
| TCTGACTACTGAAGTAGGAG+AGG | - | chr2_1:25047526-25047545 | Msa0202580:intron | 45.0% | |
| CCTAGGGCCATGAATCATTT+GGG | + | chr2_1:25047845-25047864 | None:intergenic | 45.0% | |
| CCAAATGATTCATGGCCCTA+GGG | - | chr2_1:25047843-25047862 | Msa0202580:five_prime_UTR | 45.0% | |
| !!! | CTAATTTATTATTTTATTTT+TGG | - | chr2_1:25047631-25047650 | Msa0202580:intron | 5.0% |
| GCAGCATCAAGCTCCAAAAC+AGG | + | chr2_1:25044945-25044964 | None:intergenic | 50.0% | |
| GCTTGATGCTGCAGCAACTA+AGG | - | chr2_1:25044953-25044972 | Msa0202580:CDS | 50.0% | |
| GAAACTGCAGTGTCAAGGTG+GGG | - | chr2_1:25045460-25045479 | Msa0202580:intron | 50.0% | |
| AGCAAGGACTAGAGCAGCTA+AGG | - | chr2_1:25045486-25045505 | Msa0202580:intron | 50.0% | |
| GGTTGGAAAAGGTTTGGCCA+AGG | - | chr2_1:25045614-25045633 | Msa0202580:intron | 50.0% | |
| AGGTTTGGCCAAGGATGACA+AGG | - | chr2_1:25045623-25045642 | Msa0202580:intron | 50.0% | |
| CAGCTTCAAGCCAATGTTGG+AGG | + | chr2_1:25045662-25045681 | None:intergenic | 50.0% | |
| ATTGACCCACGTCATCGCTA+TGG | - | chr2_1:25045799-25045818 | Msa0202580:CDS | 50.0% | |
| TGTGTCCATAGCGATGACGT+GGG | + | chr2_1:25045807-25045826 | None:intergenic | 50.0% | |
| TTGTGTCCATAGCGATGACG+TGG | + | chr2_1:25045808-25045827 | None:intergenic | 50.0% | |
| TCATCGGGGTCTAATGCATG+TGG | + | chr2_1:25046205-25046224 | None:intergenic | 50.0% | |
| CACTAATCTTCCAGCAGCTG+TGG | + | chr2_1:25046457-25046476 | None:intergenic | 50.0% | |
| CACAGCTGCTGGAAGATTAG+TGG | - | chr2_1:25046455-25046474 | Msa0202580:CDS | 50.0% | |
| ATGGCCCAATACCTTCTCCA+AGG | - | chr2_1:25047293-25047312 | Msa0202580:CDS | 50.0% | |
| !! | CTTGGCCTTGGAGAAGGTAT+TGG | + | chr2_1:25047301-25047320 | None:intergenic | 50.0% |
| !! | TTAGGACTTGGCCTTGGAGA+AGG | + | chr2_1:25047307-25047326 | None:intergenic | 50.0% |
| CTCCTAGGCTTGCATACATG+GGG | - | chr2_1:25047338-25047357 | Msa0202580:CDS | 50.0% | |
| CCCAAATGATTCATGGCCCT+AGG | - | chr2_1:25047842-25047861 | Msa0202580:five_prime_UTR | 50.0% | |
| CCCTAGGGCCATGAATCATT+TGG | + | chr2_1:25047846-25047865 | None:intergenic | 50.0% | |
| TGTCAAGGTGGGGAAGAGCA+AGG | - | chr2_1:25045470-25045489 | Msa0202580:intron | 55.0% | |
| CGATGACGTGGGTCAATCTG+TGG | + | chr2_1:25045796-25045815 | None:intergenic | 55.0% | |
| TCTTCCAGCAGCTGTGGTTG+CGG | + | chr2_1:25046451-25046470 | None:intergenic | 55.0% | |
| GGCACAACAAGGTGTACTCG+AGG | - | chr2_1:25046476-25046495 | Msa0202580:CDS | 55.0% | |
| TGCAAGTGGTCTACTGGAGC+TGG | - | chr2_1:25047166-25047185 | Msa0202580:CDS | 55.0% | |
| ACTGGAGCTGGACCTCGTAT+TGG | - | chr2_1:25047178-25047197 | Msa0202580:CDS | 55.0% | |
| CTGGAGCTGGACCTCGTATT+GGG | - | chr2_1:25047179-25047198 | Msa0202580:CDS | 55.0% | |
| TCACGCACACACCCAATACG+AGG | + | chr2_1:25047193-25047212 | None:intergenic | 55.0% | |
| GGTCTTGCAGAAGCAGGTCT+AGG | + | chr2_1:25047265-25047284 | None:intergenic | 55.0% | |
| AGCCCCATGTATGCAAGCCT+AGG | + | chr2_1:25047343-25047362 | None:intergenic | 55.0% | |
| GCAATTGGGGTTCTTGGGCT+AGG | + | chr2_1:25047367-25047386 | None:intergenic | 55.0% | |
| ! | TGGCGTTGAAGGGTAGCCCT+TGG | + | chr2_1:25046047-25046066 | None:intergenic | 60.0% |
| GGGGCCGCAACCACAGCTGC+TGG | - | chr2_1:25046444-25046463 | Msa0202580:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 25044249 | 25047872 | 25044249 | ID=Msa0202580;Name=Msa0202580 |
| chr2_1 | mRNA | 25044249 | 25047872 | 25044249 | ID=Msa0202580-mRNA-1;Parent=Msa0202580;Name=Msa0202580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=140|1|1|1|0.87|0.77|9|479|508 |
| chr2_1 | exon | 25044249 | 25045168 | 25044249 | ID=Msa0202580-mRNA-1:exon:9617;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25045260 | 25045361 | 25045260 | ID=Msa0202580-mRNA-1:exon:9616;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25045624 | 25045854 | 25045624 | ID=Msa0202580-mRNA-1:exon:9615;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25046033 | 25046120 | 25046033 | ID=Msa0202580-mRNA-1:exon:9614;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25046234 | 25046322 | 25046234 | ID=Msa0202580-mRNA-1:exon:9613;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25046441 | 25046506 | 25046441 | ID=Msa0202580-mRNA-1:exon:9612;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25046614 | 25046728 | 25046614 | ID=Msa0202580-mRNA-1:exon:9611;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25047073 | 25047533 | 25047073 | ID=Msa0202580-mRNA-1:exon:9610;Parent=Msa0202580-mRNA-1 |
| chr2_1 | exon | 25047799 | 25047872 | 25047799 | ID=Msa0202580-mRNA-1:exon:9609;Parent=Msa0202580-mRNA-1 |
| chr2_1 | five_prime_UTR | 25047799 | 25047872 | 25047799 | ID=Msa0202580-mRNA-1:five_prime_utr;Parent=Msa0202580-mRNA-1 |
| chr2_1 | five_prime_UTR | 25047468 | 25047533 | 25047468 | ID=Msa0202580-mRNA-1:five_prime_utr;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25047073 | 25047467 | 25047073 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25046614 | 25046728 | 25046614 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25046441 | 25046506 | 25046441 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25046234 | 25046322 | 25046234 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25046033 | 25046120 | 25046033 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25045624 | 25045854 | 25045624 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25045260 | 25045361 | 25045260 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | CDS | 25044728 | 25045168 | 25044728 | ID=Msa0202580-mRNA-1:cds;Parent=Msa0202580-mRNA-1 |
| chr2_1 | three_prime_UTR | 25044249 | 25044727 | 25044249 | ID=Msa0202580-mRNA-1:three_prime_utr;Parent=Msa0202580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
