Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574570 | RHN43745.1 | 95.072 | 487 | 18 | 2 | 1 | 481 | 72 | 558 | 0.0 | 953 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574570 | sp|Q9C9T2|SARD1_ARATH | 48.478 | 427 | 197 | 11 | 1 | 419 | 1 | 412 | 1.94e-134 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574570 | A0A396GY37 | 95.072 | 487 | 18 | 2 | 1 | 481 | 72 | 558 | 0.0 | 953 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0574570 | 0.836358 | 9.806054e-57 | -8.615850e-47 |
| Msa0013280 | Msa0574570 | 0.851763 | 7.181617e-61 | -8.615850e-47 |
| Msa0091930 | Msa0574570 | 0.821055 | 4.946936e-53 | -8.615850e-47 |
| Msa0106530 | Msa0574570 | 0.851753 | 7.229450e-61 | -8.615850e-47 |
| Msa0131410 | Msa0574570 | 0.812570 | 3.967125e-51 | -8.615850e-47 |
| Msa0131420 | Msa0574570 | 0.839200 | 1.826297e-57 | -8.615850e-47 |
| Msa0133080 | Msa0574570 | 0.805460 | 1.320913e-49 | -8.615850e-47 |
| Msa0235720 | Msa0574570 | 0.824902 | 6.275734e-54 | -8.615850e-47 |
| Msa0377800 | Msa0574570 | 0.860556 | 1.902122e-63 | -8.615850e-47 |
| Msa0419670 | Msa0574570 | 0.817026 | 4.082566e-52 | -8.615850e-47 |
| Msa0426600 | Msa0574570 | 0.829498 | 4.978919e-55 | -8.615850e-47 |
| Msa0431440 | Msa0574570 | 0.808860 | 2.516598e-50 | -8.615850e-47 |
| Msa0466010 | Msa0574570 | 0.859051 | 5.404391e-63 | -8.615850e-47 |
| Msa0472910 | Msa0574570 | 0.837597 | 4.733145e-57 | -8.615850e-47 |
| Msa0476330 | Msa0574570 | 0.812884 | 3.387075e-51 | -8.615850e-47 |
| Msa0271550 | Msa0574570 | 0.809778 | 1.599087e-50 | -8.615850e-47 |
| Msa0314180 | Msa0574570 | 0.818444 | 1.953783e-52 | -8.615850e-47 |
| Msa0319290 | Msa0574570 | 0.801616 | 8.278117e-49 | -8.615850e-47 |
| Msa0490380 | Msa0574570 | 0.820661 | 6.094864e-53 | -8.615850e-47 |
| Msa0517570 | Msa0574570 | 0.854573 | 1.124648e-61 | -8.615850e-47 |
| Msa0520330 | Msa0574570 | 0.810061 | 1.389851e-50 | -8.615850e-47 |
| Msa0524330 | Msa0574570 | 0.801352 | 9.378785e-49 | -8.615850e-47 |
| Msa0524440 | Msa0574570 | 0.827007 | 1.984229e-54 | -8.615850e-47 |
| Msa0574570 | Msa0574580 | 0.899048 | 2.912872e-77 | -8.615850e-47 |
| Msa0574570 | Msa0574600 | 0.823985 | 1.031206e-53 | -8.615850e-47 |
| Msa0574570 | Msa0580920 | 0.846930 | 1.593351e-59 | -8.615850e-47 |
| Msa0574570 | Msa0662580 | 0.808550 | 2.931692e-50 | -8.615850e-47 |
| Msa0574570 | Msa0708290 | 0.918010 | 2.637109e-86 | -8.615850e-47 |
| Msa0574570 | Msa0708300 | 0.924874 | 3.927213e-90 | -8.615850e-47 |
| Msa0574570 | Msa0708310 | 0.813633 | 2.318975e-51 | -8.615850e-47 |
| Msa0574570 | Msa0745070 | 0.848391 | 6.314610e-60 | -8.615850e-47 |
| Msa0574570 | Msa0780350 | 0.827462 | 1.543939e-54 | -8.615850e-47 |
| Msa0574570 | Msa0780450 | 0.801796 | 7.604645e-49 | -8.615850e-47 |
| Msa0574570 | Msa0825870 | 0.832360 | 9.882243e-56 | -8.615850e-47 |
| Msa0574570 | Msa0834030 | 0.828369 | 9.343315e-55 | -8.615850e-47 |
| Msa0574570 | Msa0870060 | 0.836340 | 9.909540e-57 | -8.615850e-47 |
| Msa0574570 | Msa0903370 | 0.824781 | 6.703039e-54 | -8.615850e-47 |
| Msa0574570 | Msa0914290 | 0.812459 | 4.193965e-51 | -8.615850e-47 |
| Msa0574570 | Msa0936530 | 0.861645 | 8.871758e-64 | -8.615850e-47 |
| Msa0574570 | Msa0936550 | 0.873829 | 1.085174e-67 | -8.615850e-47 |
| Msa0574570 | Msa0952360 | 0.814687 | 1.356997e-51 | -8.615850e-47 |
| Msa0574570 | Msa0964490 | 0.811443 | 6.982568e-51 | -8.615850e-47 |
| Msa0574570 | Msa0972770 | 0.820318 | 7.306535e-53 | -8.615850e-47 |
| Msa0574570 | Msa0973520 | 0.845797 | 3.245155e-59 | -8.615850e-47 |
| Msa0574570 | Msa0982780 | 0.879401 | 1.284039e-69 | -8.615850e-47 |
| Msa0574570 | Msa0992640 | 0.806182 | 9.313768e-50 | -8.615850e-47 |
| Msa0574570 | Msa0992680 | 0.804038 | 2.616185e-49 | -8.615850e-47 |
| Msa0574570 | Msa0998460 | 0.801164 | 1.024496e-48 | -8.615850e-47 |
| Msa0574570 | Msa1009110 | 0.810831 | 9.480674e-51 | -8.615850e-47 |
| Msa0574570 | Msa1017160 | 0.828062 | 1.107397e-54 | -8.615850e-47 |
| Msa0574570 | Msa1177330 | 0.815674 | 8.192217e-52 | -8.615850e-47 |
| Msa0574570 | Msa1201200 | 0.843686 | 1.202673e-58 | -8.615850e-47 |
| Msa0574570 | Msa1236730 | 0.858077 | 1.055136e-62 | -8.615850e-47 |
| Msa0574570 | Msa1238690 | 0.837081 | 6.414129e-57 | -8.615850e-47 |
| Msa0574570 | Msa1246700 | 0.809460 | 1.871531e-50 | -8.615850e-47 |
| Msa0574570 | Msa1252960 | 0.808303 | 3.309767e-50 | -8.615850e-47 |
| Msa0574570 | Msa1269660 | 0.842506 | 2.480221e-58 | -8.615850e-47 |
| Msa0574570 | Msa1317130 | 0.852334 | 4.942434e-61 | -8.615850e-47 |
| Msa0574570 | Msa1344890 | 0.845720 | 3.405582e-59 | -8.615850e-47 |
| Msa0574570 | Msa1353870 | 0.910719 | 1.367763e-82 | -8.615850e-47 |
| Msa0574570 | Msa1353880 | 0.916394 | 1.878377e-85 | -8.615850e-47 |
| Msa0574570 | Msa1353890 | 0.815742 | 7.910138e-52 | -8.615850e-47 |
| Msa0574570 | Msa1365270 | 0.805578 | 1.247461e-49 | -8.615850e-47 |
| Msa0574570 | Msa1367530 | 0.813881 | 2.044789e-51 | -8.615850e-47 |
| Msa0574570 | Msa1376450 | 0.822509 | 2.280141e-53 | -8.615850e-47 |
| Msa0574570 | Msa1391550 | 0.810310 | 1.228498e-50 | -8.615850e-47 |
| Msa0574570 | Msa1398900 | 0.807017 | 6.207539e-50 | -8.615850e-47 |
| Msa0574570 | Msa1405820 | 0.818839 | 1.589651e-52 | -8.615850e-47 |
| Msa0574570 | Msa1408180 | 0.854313 | 1.337926e-61 | -8.615850e-47 |
| Msa0574570 | Msa1448980 | 0.853090 | 3.005951e-61 | -8.615850e-47 |
| Msa0574570 | Msa1458510 | 0.808031 | 3.781915e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574570 | MtrunA17_Chr8g0391211 | 95.072 | 487 | 18 | 2 | 1 | 481 | 72 | 558 | 0.0 | 953 |
| Msa0574570 | MtrunA17_Chr8g0391221 | 87.764 | 474 | 50 | 4 | 1 | 467 | 1 | 473 | 0.0 | 841 |
| Msa0574570 | MtrunA17_Chr6g0484111 | 61.680 | 488 | 166 | 15 | 1 | 472 | 1 | 483 | 0.0 | 566 |
| Msa0574570 | MtrunA17_Chr6g0484131 | 60.996 | 482 | 171 | 12 | 1 | 472 | 1 | 475 | 0.0 | 559 |
| Msa0574570 | MtrunA17_Chr6g0484121 | 60.788 | 482 | 172 | 12 | 1 | 472 | 1 | 475 | 0.0 | 555 |
| Msa0574570 | MtrunA17_Chr2g0281171 | 44.501 | 391 | 204 | 5 | 4 | 389 | 16 | 398 | 5.20e-112 | 344 |
| Msa0574570 | MtrunA17_Chr4g0048161 | 45.013 | 391 | 202 | 5 | 4 | 389 | 15 | 397 | 4.09e-111 | 342 |
| Msa0574570 | MtrunA17_Chr4g0072691 | 47.059 | 357 | 182 | 5 | 31 | 383 | 4 | 357 | 6.91e-108 | 333 |
| Msa0574570 | MtrunA17_Chr2g0304831 | 42.015 | 407 | 218 | 6 | 30 | 420 | 34 | 438 | 1.24e-103 | 321 |
| Msa0574570 | MtrunA17_Chr4g0059411 | 48.101 | 316 | 154 | 5 | 12 | 326 | 8 | 314 | 1.64e-89 | 283 |
| Msa0574570 | MtrunA17_Chr7g0271691 | 34.264 | 394 | 233 | 10 | 50 | 430 | 44 | 424 | 5.21e-55 | 192 |
| Msa0574570 | MtrunA17_Chr7g0271681 | 39.245 | 265 | 149 | 6 | 92 | 350 | 10 | 268 | 5.76e-45 | 164 |
| Msa0574570 | MtrunA17_Chr7g0271671 | 30.820 | 451 | 266 | 15 | 50 | 476 | 60 | 488 | 3.17e-44 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574570 | AT1G73805.1 | 48.478 | 427 | 197 | 11 | 1 | 419 | 1 | 412 | 1.97e-135 | 399 |
| Msa0574570 | AT5G57580.1 | 46.891 | 386 | 190 | 6 | 3 | 383 | 12 | 387 | 2.11e-111 | 343 |
| Msa0574570 | AT4G25800.1 | 46.736 | 383 | 191 | 5 | 13 | 389 | 9 | 384 | 1.67e-109 | 337 |
| Msa0574570 | AT4G25800.2 | 46.736 | 383 | 191 | 5 | 13 | 389 | 9 | 384 | 1.67e-109 | 337 |
| Msa0574570 | AT2G18750.3 | 45.225 | 356 | 192 | 3 | 29 | 383 | 36 | 389 | 9.38e-106 | 328 |
| Msa0574570 | AT2G18750.2 | 45.225 | 356 | 192 | 3 | 29 | 383 | 36 | 389 | 9.38e-106 | 328 |
| Msa0574570 | AT2G18750.1 | 45.225 | 356 | 192 | 3 | 29 | 383 | 36 | 389 | 9.38e-106 | 328 |
| Msa0574570 | AT2G24300.2 | 43.188 | 389 | 212 | 5 | 4 | 387 | 3 | 387 | 2.54e-97 | 305 |
| Msa0574570 | AT2G24300.3 | 43.188 | 389 | 212 | 5 | 4 | 387 | 7 | 391 | 3.16e-97 | 305 |
| Msa0574570 | AT4G31000.1 | 43.631 | 369 | 195 | 6 | 17 | 381 | 21 | 380 | 6.46e-97 | 303 |
| Msa0574570 | AT5G62570.1 | 42.204 | 372 | 195 | 7 | 19 | 384 | 21 | 378 | 8.86e-91 | 286 |
| Msa0574570 | AT5G62570.4 | 43.343 | 353 | 180 | 7 | 19 | 365 | 21 | 359 | 2.04e-90 | 280 |
| Msa0574570 | AT5G62570.2 | 41.892 | 370 | 201 | 6 | 21 | 384 | 2 | 363 | 4.29e-90 | 283 |
| Msa0574570 | AT2G24300.1 | 43.114 | 334 | 185 | 3 | 58 | 387 | 8 | 340 | 5.95e-86 | 275 |
| Msa0574570 | AT4G31000.2 | 39.634 | 328 | 172 | 6 | 58 | 381 | 54 | 359 | 1.09e-72 | 239 |
| Msa0574570 | AT5G62570.3 | 45.745 | 282 | 137 | 6 | 19 | 298 | 21 | 288 | 8.65e-71 | 227 |
| Msa0574570 | AT5G26920.3 | 35.519 | 366 | 205 | 9 | 29 | 384 | 24 | 368 | 1.34e-69 | 228 |
| Msa0574570 | AT5G26920.1 | 35.519 | 366 | 205 | 9 | 29 | 384 | 24 | 368 | 1.87e-68 | 229 |
| Msa0574570 | AT5G26920.2 | 35.246 | 366 | 198 | 10 | 29 | 384 | 24 | 360 | 1.31e-65 | 221 |
Find 122 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAAATGGATGATAAAT+TGG | 0.135753 | 4_1:+78165053 | None:intergenic |
| TATGATCAAAACAACTATTT+TGG | 0.186437 | 4_1:-78164564 | Msa0574570:CDS |
| AACATGAATTGAAAACTTAA+TGG | 0.190103 | 4_1:+78166552 | None:intergenic |
| TCCTAAATTCTTTACCAAAA+TGG | 0.190760 | 4_1:-78167241 | Msa0574570:exon |
| TATTTGACGCAACCTTAAAA+TGG | 0.197207 | 4_1:+78164222 | None:intergenic |
| TATGGGCGTTGTTTCTCTTT+TGG | 0.207593 | 4_1:-78164201 | Msa0574570:three_prime_UTR |
| GTAGACTTGTAGGGACTATT+TGG | 0.242899 | 4_1:+78166433 | None:intergenic |
| CCCACTCTCCACACTTGGTT+CGG | 0.244500 | 4_1:-78164148 | Msa0574570:three_prime_UTR |
| TTCTTATCTCATCAACATTT+CGG | 0.309722 | 4_1:+78164057 | None:intergenic |
| CACACTTCGTCCTTTAGATT+TGG | 0.320597 | 4_1:+78165409 | None:intergenic |
| ACTACAATTTCTATCTTGAT+TGG | 0.325646 | 4_1:+78166405 | None:intergenic |
| ATAGAAATTGTAGTTCTTGA+TGG | 0.327443 | 4_1:-78166396 | Msa0574570:CDS |
| TGAGAAAAGCAGAAGGTTCT+TGG | 0.334748 | 4_1:+78167367 | None:intergenic |
| GTTCTCATGCGTTTGTCATT+TGG | 0.344575 | 4_1:+78167174 | None:intergenic |
| ATTCTACTACCGGTGAATAT+TGG | 0.346627 | 4_1:+78166510 | None:intergenic |
| CACAACTATAATGGACAAAT+AGG | 0.351229 | 4_1:-78164525 | Msa0574570:CDS |
| GTGTGGCGTTTAGAGAAAAT+TGG | 0.351259 | 4_1:-78165391 | Msa0574570:CDS |
| ATTCAAATGGATGATAAATT+GGG | 0.356032 | 4_1:+78165054 | None:intergenic |
| CATGCAAAGACTTGTGTAAT+GGG | 0.357437 | 4_1:-78165103 | Msa0574570:CDS |
| CTCGAGACTCACAACTATAA+TGG | 0.361920 | 4_1:-78164534 | Msa0574570:CDS |
| GGGAAAAGACCATTGCTTAC+AGG | 0.362337 | 4_1:-78166297 | Msa0574570:CDS |
| CCACTCTCCACACTTGGTTC+GGG | 0.365181 | 4_1:-78164147 | Msa0574570:three_prime_UTR |
| TGTGAATCTAAGAAGCTATA+AGG | 0.365716 | 4_1:+78164450 | None:intergenic |
| TTCTCATGTGACAGGGTAAT+AGG | 0.366638 | 4_1:-78166933 | Msa0574570:intron |
| GATCTAACGCCTTCAAGTTC+AGG | 0.368265 | 4_1:-78164414 | Msa0574570:CDS |
| AGGGATGGAATTGCACCAAT+TGG | 0.372898 | 4_1:-78166255 | Msa0574570:CDS |
| GCTTGCTCTGATGTTATTGT+TGG | 0.374740 | 4_1:+78167267 | None:intergenic |
| ATTGGGTGAGGTAGACTTGT+AGG | 0.383658 | 4_1:+78166423 | None:intergenic |
| CAGTCATGCCTTCAAGAATT+CGG | 0.388660 | 4_1:+78166142 | None:intergenic |
| CGATGATCTTTAACAACAAA+AGG | 0.396457 | 4_1:+78166117 | None:intergenic |
| TGATGTTAGCTCTAACCATT+TGG | 0.400701 | 4_1:+78165023 | None:intergenic |
| AATATTGTGAAAGAGAGAAA+TGG | 0.401290 | 4_1:-78166318 | Msa0574570:CDS |
| CTACAATTTCTATCTTGATT+GGG | 0.407874 | 4_1:+78166406 | None:intergenic |
| TTTGGCATATTGCATTCAAA+TGG | 0.408571 | 4_1:+78165041 | None:intergenic |
| TTTAAGGTTGCGTCAAATAT+GGG | 0.414284 | 4_1:-78164218 | Msa0574570:three_prime_UTR |
| TTAGAGAAAATTGGTAAAGA+TGG | 0.417010 | 4_1:-78165382 | Msa0574570:CDS |
| GGGATGGAATTGCACCAATT+GGG | 0.430451 | 4_1:-78166254 | Msa0574570:CDS |
| AAAATATAGCGAGTATATCT+TGG | 0.434635 | 4_1:-78164274 | Msa0574570:three_prime_UTR |
| CAAAGTGTCCGAATTCTTGA+AGG | 0.455036 | 4_1:-78166150 | Msa0574570:CDS |
| TGAGAGAAGCATATGCTAGA+TGG | 0.455078 | 4_1:-78164849 | Msa0574570:CDS |
| ATATTGTGAAAGAGAGAAAT+GGG | 0.455511 | 4_1:-78166317 | Msa0574570:CDS |
| TTCGGATTATACAATTCAAA+AGG | 0.460467 | 4_1:+78164075 | None:intergenic |
| ATTTGACGCAACCTTAAAAT+GGG | 0.463283 | 4_1:+78164223 | None:intergenic |
| ACATGCAAAGACTTGTGTAA+TGG | 0.464107 | 4_1:-78165104 | Msa0574570:CDS |
| CTTGAAGCTCTATCAATGAT+TGG | 0.465914 | 4_1:+78164390 | None:intergenic |
| AGTTCACTGATAATTCTAGT+TGG | 0.470070 | 4_1:-78166224 | Msa0574570:CDS |
| CCCACATCACCATTCATGAA+TGG | 0.470253 | 4_1:-78164480 | Msa0574570:CDS |
| TTTGAATGCAATATGCCAAA+TGG | 0.472527 | 4_1:-78165038 | Msa0574570:CDS |
| CTTACCACTCTTCTAAGTAA+AGG | 0.474223 | 4_1:+78166861 | None:intergenic |
| ACTTCGTCCTTTAGATTTGG+TGG | 0.475388 | 4_1:+78165412 | None:intergenic |
| GAGAATTGAATCTTACTATG+AGG | 0.479870 | 4_1:-78166275 | Msa0574570:CDS |
| AAGGTTCCAAGCCAGAGAAA+AGG | 0.490929 | 4_1:+78166880 | None:intergenic |
| GTTATTGTTGGTGTAAGAAA+AGG | 0.496444 | 4_1:+78167279 | None:intergenic |
| TGTCCGTAGTTGATCCTCAT+AGG | 0.506873 | 4_1:-78165300 | Msa0574570:CDS |
| ATGAATGGTGATGTGGGAAA+TGG | 0.509770 | 4_1:+78164486 | None:intergenic |
| GTGAACTCAATATCCCCAAT+TGG | 0.510288 | 4_1:+78166240 | None:intergenic |
| GGACAAATAGGTTGCATCGA+GGG | 0.511152 | 4_1:-78164513 | Msa0574570:CDS |
| GGTAATAGGAGAAATTGTTA+TGG | 0.512172 | 4_1:-78166919 | Msa0574570:CDS |
| ATGATTGGTCCTGAACTTGA+AGG | 0.512823 | 4_1:+78164405 | None:intergenic |
| ATTGCTTGAAGTCTCAATGA+AGG | 0.519319 | 4_1:+78166582 | None:intergenic |
| ATGGTTAGAGCTAACATCAA+TGG | 0.523691 | 4_1:-78165019 | Msa0574570:CDS |
| CGGACACTTTGATTAGTCCC+AGG | 0.523841 | 4_1:+78166162 | None:intergenic |
| ATTTCTATCTTGATTGGGTG+AGG | 0.527373 | 4_1:+78166411 | None:intergenic |
| AACGTTGCTTTGTTAACTCA+AGG | 0.528420 | 4_1:-78164790 | Msa0574570:intron |
| GCAAATGTCTCGGTTGGGAA+TGG | 0.533136 | 4_1:+78164991 | None:intergenic |
| TTTCAAAGCAATAATCATCA+AGG | 0.539152 | 4_1:-78164600 | Msa0574570:CDS |
| GTTGCTGTTAGAATTGCTCC+TGG | 0.539447 | 4_1:-78166180 | Msa0574570:CDS |
| CATGTCTAGTATTCTACTAC+CGG | 0.542523 | 4_1:+78166500 | None:intergenic |
| CTTTCACTTCCAATATTCAC+CGG | 0.544704 | 4_1:-78166519 | Msa0574570:CDS |
| TGCTAGATGGAATGAGTTGG+AGG | 0.547803 | 4_1:-78164836 | Msa0574570:CDS |
| CTTCGTCCTTTAGATTTGGT+GGG | 0.547859 | 4_1:+78165413 | None:intergenic |
| TTGGAATGTCAGAGAAAATG+TGG | 0.547888 | 4_1:-78165141 | Msa0574570:CDS |
| ATGTTGCAAATGTCTCGGTT+GGG | 0.552006 | 4_1:+78164986 | None:intergenic |
| CGTCCTTTAGATTTGGTGGG+TGG | 0.553800 | 4_1:+78165416 | None:intergenic |
| ACACCACCCACCAAATCTAA+AGG | 0.556569 | 4_1:-78165419 | Msa0574570:CDS |
| TTGGGTGAGGTAGACTTGTA+GGG | 0.558041 | 4_1:+78166424 | None:intergenic |
| CATGTTGCAAATGTCTCGGT+TGG | 0.563388 | 4_1:+78164985 | None:intergenic |
| CAACCGAGACATTTGCAACA+TGG | 0.564291 | 4_1:-78164984 | Msa0574570:CDS |
| AGAATTGAATCTTACTATGA+GGG | 0.565949 | 4_1:-78166274 | Msa0574570:CDS |
| TTCAATTCTCCTGTAAGCAA+TGG | 0.566358 | 4_1:+78166288 | None:intergenic |
| TTCATTGAGACTTCAAGCAA+TGG | 0.568410 | 4_1:-78166580 | Msa0574570:CDS |
| CAATCATTGATAGAGCTTCA+AGG | 0.569919 | 4_1:-78164389 | Msa0574570:CDS |
| TTCATAACCCGAACCAAGTG+TGG | 0.570016 | 4_1:+78164140 | None:intergenic |
| CGGTAGTAGAATACTAGACA+TGG | 0.574833 | 4_1:-78166499 | Msa0574570:CDS |
| TTGAATCTTACTATGAGGGA+TGG | 0.576141 | 4_1:-78166270 | Msa0574570:CDS |
| GGATGGAATTGCACCAATTG+GGG | 0.580908 | 4_1:-78166253 | Msa0574570:CDS |
| TGTACCTTTCTGAGCCTATG+AGG | 0.581097 | 4_1:+78165286 | None:intergenic |
| GGATGATAAATTGGGGTCCA+CGG | 0.583121 | 4_1:+78165062 | None:intergenic |
| GCCATTCATGAATGGTGATG+TGG | 0.588555 | 4_1:+78164479 | None:intergenic |
| GACAAATAGGTTGCATCGAG+GGG | 0.589199 | 4_1:-78164512 | Msa0574570:CDS |
| CCGAACCAAGTGTGGAGAGT+GGG | 0.590097 | 4_1:+78164148 | None:intergenic |
| GGAACCTTTACTTAGAAGAG+TGG | 0.595523 | 4_1:-78166865 | Msa0574570:intron |
| TTCTTAGATTCACAATCAGA+CGG | 0.596172 | 4_1:-78164441 | Msa0574570:CDS |
| TGTCCATGTTGCAAATGTCT+CGG | 0.598704 | 4_1:+78164981 | None:intergenic |
| GGTGACTTTGTTATTGATCG+TGG | 0.600634 | 4_1:+78166603 | None:intergenic |
| CAAATCTAAAGGACGAAGTG+TGG | 0.604899 | 4_1:-78165408 | Msa0574570:CDS |
| TGATCCTCATAGGCTCAGAA+AGG | 0.607583 | 4_1:-78165290 | Msa0574570:intron |
| GGTATGATGCCATTCATGAA+TGG | 0.616314 | 4_1:+78164471 | None:intergenic |
| ATATGCTAGATGGAATGAGT+TGG | 0.618437 | 4_1:-78164839 | Msa0574570:CDS |
| ACAATAACATCAGAGCAAGC+TGG | 0.619100 | 4_1:-78167264 | Msa0574570:five_prime_UTR |
| GACTTTGTTATTGATCGTGG+TGG | 0.621283 | 4_1:+78166606 | None:intergenic |
| AGTAGAATACTAGACATGGA+TGG | 0.625124 | 4_1:-78166495 | Msa0574570:CDS |
| TTCAAATGGATGATAAATTG+GGG | 0.625219 | 4_1:+78165055 | None:intergenic |
| TTGCTGTTAGAATTGCTCCT+GGG | 0.625923 | 4_1:-78166179 | Msa0574570:CDS |
| TGATTAGGTGAATGAAGAGG+TGG | 0.626231 | 4_1:-78166652 | Msa0574570:intron |
| CCATTCATGAATGGTGATGT+GGG | 0.631409 | 4_1:+78164480 | None:intergenic |
| AATGGTGATGTGGGAAATGG+TGG | 0.633806 | 4_1:+78164489 | None:intergenic |
| AGACATTTGCAACATGGACA+AGG | 0.635407 | 4_1:-78164978 | Msa0574570:intron |
| CCCGAACCAAGTGTGGAGAG+TGG | 0.638616 | 4_1:+78164147 | None:intergenic |
| GGAATCATCATGGACTAGTG+AGG | 0.638853 | 4_1:-78166352 | Msa0574570:CDS |
| ATTGCTTTGAAATTGCTCCA+CGG | 0.639829 | 4_1:+78164611 | None:intergenic |
| AACAAACGTTATGTCTACCG+TGG | 0.654103 | 4_1:-78165079 | Msa0574570:CDS |
| GAGCCTATGAGGATCAACTA+CGG | 0.659771 | 4_1:+78165297 | None:intergenic |
| ATATGATTAGGTGAATGAAG+AGG | 0.685589 | 4_1:-78166655 | Msa0574570:intron |
| TGTAAGAAAAGGTTGCAGTG+AGG | 0.686980 | 4_1:+78167290 | None:intergenic |
| TCACACGACAGGTGGAACCG+TGG | 0.687650 | 4_1:-78164628 | Msa0574570:intron |
| TTAGATTCACAATCAGACGG+TGG | 0.697439 | 4_1:-78164438 | Msa0574570:CDS |
| TGGACAAATAGGTTGCATCG+AGG | 0.700328 | 4_1:-78164514 | Msa0574570:CDS |
| TGGAATGTCAGAGAAAATGT+GGG | 0.706104 | 4_1:-78165140 | Msa0574570:CDS |
| CTTGAGAAACTCTTGCACTG+TGG | 0.740612 | 4_1:+78165324 | None:intergenic |
| TTTGTTGTTAAAGATCATCG+CGG | 0.765249 | 4_1:-78166114 | Msa0574570:CDS |
| TCATTGATAGAGCTTCAAGG+TGG | 0.769312 | 4_1:-78164386 | Msa0574570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAATAAAATGAATATT+GGG | + | chr4_1:78164327-78164346 | None:intergenic | 10.0% |
| !! | TTCTATTTATATATATGATT+AGG | - | chr4_1:78164752-78164771 | Msa0574570:intron | 10.0% |
| !!! | TTTTTGTTTAGTTTATTTTA+AGG | - | chr4_1:78165736-78165755 | Msa0574570:intron | 10.0% |
| !! | AAAATAAGTTAATGTTTATA+TGG | - | chr4_1:78166233-78166252 | Msa0574570:CDS | 10.0% |
| !! | GAACATAATAAAATGAATAT+TGG | + | chr4_1:78164328-78164347 | None:intergenic | 15.0% |
| !! | TTAATTTCATTTCGAAATTA+TGG | + | chr4_1:78164600-78164619 | None:intergenic | 15.0% |
| !! | TGATAAATTTAATTAAGGTA+TGG | + | chr4_1:78164629-78164648 | None:intergenic | 15.0% |
| !! | GTTTCTGATAAATTTAATTA+AGG | + | chr4_1:78164634-78164653 | None:intergenic | 15.0% |
| !! | AGATTGATTATAATATGTAT+AGG | - | chr4_1:78165444-78165463 | Msa0574570:intron | 15.0% |
| !!! | TATTTTTATGTTTTCTTTCT+TGG | - | chr4_1:78165483-78165502 | Msa0574570:intron | 15.0% |
| !! | CATTATTAATGTTCAATAAA+TGG | - | chr4_1:78166196-78166215 | Msa0574570:CDS | 15.0% |
| !! | GTAATTAAAAAAATTGAACA+AGG | + | chr4_1:78166491-78166510 | None:intergenic | 15.0% |
| !!! | TTTTTTTAATTACTATGCAT+TGG | - | chr4_1:78166498-78166517 | Msa0574570:CDS | 15.0% |
| !!! | TGTAAACATTTTCATATTGA+AGG | + | chr4_1:78164727-78164746 | None:intergenic | 20.0% |
| !! | AACATGAATTGAAAACTTAA+TGG | + | chr4_1:78164870-78164889 | None:intergenic | 20.0% |
| !! | TTGGTCAAATTAATATGAAT+AGG | - | chr4_1:78165502-78165521 | Msa0574570:intron | 20.0% |
| !! | ACACATCAATGTTTAATTAA+AGG | + | chr4_1:78165667-78165686 | None:intergenic | 20.0% |
| !! | GGTTGTTAAGATATAAATAA+AGG | - | chr4_1:78165757-78165776 | Msa0574570:intron | 20.0% |
| !! | ATATAAATAAAGGATTAGAG+AGG | - | chr4_1:78165767-78165786 | Msa0574570:intron | 20.0% |
| !! | TATAAATAAAGGATTAGAGA+GGG | - | chr4_1:78165768-78165787 | Msa0574570:intron | 20.0% |
| !! | ATTCAAATGGATGATAAATT+GGG | + | chr4_1:78166368-78166387 | None:intergenic | 20.0% |
| !!! | TATGATCAAAACAACTATTT+TGG | - | chr4_1:78166855-78166874 | Msa0574570:intron | 20.0% |
| !! | AAATCGAAAAGAAAAAATGT+AGG | - | chr4_1:78167300-78167319 | Msa0574570:five_prime_UTR | 20.0% |
| !! | AATCGAAAAGAAAAAATGTA+GGG | - | chr4_1:78167301-78167320 | Msa0574570:five_prime_UTR | 20.0% |
| !! | TTTTATATGAGAAAAGCAGA+AGG | + | chr4_1:78164062-78164081 | None:intergenic | 25.0% |
| ! | TCCTAAATTCTTTACCAAAA+TGG | - | chr4_1:78164178-78164197 | Msa0574570:three_prime_UTR | 25.0% |
| !!! | ACCATTTTGGTAAAGAATTT+AGG | + | chr4_1:78164182-78164201 | None:intergenic | 25.0% |
| ! | GAAATTATGGTAAAGTTGAA+TGG | + | chr4_1:78164587-78164606 | None:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | + | chr4_1:78165016-78165035 | None:intergenic | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | + | chr4_1:78165017-78165036 | None:intergenic | 25.0% |
| ! | ATAGAAATTGTAGTTCTTGA+TGG | - | chr4_1:78165023-78165042 | Msa0574570:CDS | 25.0% |
| ! | AATATTGTGAAAGAGAGAAA+TGG | - | chr4_1:78165101-78165120 | Msa0574570:CDS | 25.0% |
| ! | ATATTGTGAAAGAGAGAAAT+GGG | - | chr4_1:78165102-78165121 | Msa0574570:CDS | 25.0% |
| ! | AGAATTGAATCTTACTATGA+GGG | - | chr4_1:78165145-78165164 | Msa0574570:CDS | 25.0% |
| ! | CATGCTTTCATATAAATTCA+AGG | + | chr4_1:78165417-78165436 | None:intergenic | 25.0% |
| !!! | TTTATTTCTGTGTTCTTTCT+TGG | - | chr4_1:78165545-78165564 | Msa0574570:intron | 25.0% |
| ! | GCTGTTAATTAACAATTAGT+TGG | - | chr4_1:78165698-78165717 | Msa0574570:intron | 25.0% |
| !!! | GAATTATGTTATTTCCACAT+TGG | - | chr4_1:78165855-78165874 | Msa0574570:intron | 25.0% |
| ! | AAGATATAACAAACCAACTA+TGG | + | chr4_1:78165909-78165928 | None:intergenic | 25.0% |
| !!! | ATAGTTGGTTTGTTATATCT+TGG | - | chr4_1:78165908-78165927 | Msa0574570:intron | 25.0% |
| ! | TTAGAGAAAATTGGTAAAGA+TGG | - | chr4_1:78166037-78166056 | Msa0574570:intron | 25.0% |
| ! | ACAAAAAATTGACCTCAAAA+GGG | - | chr4_1:78166068-78166087 | Msa0574570:intron | 25.0% |
| ! | TTCAAATGGATGATAAATTG+GGG | + | chr4_1:78166367-78166386 | None:intergenic | 25.0% |
| ! | CATTCAAATGGATGATAAAT+TGG | + | chr4_1:78166369-78166388 | None:intergenic | 25.0% |
| ! | CTGCAAATTAAATGAACTAT+AGG | + | chr4_1:78166531-78166550 | None:intergenic | 25.0% |
| ! | TTTCAAAGCAATAATCATCA+AGG | - | chr4_1:78166819-78166838 | Msa0574570:intron | 25.0% |
| ! | AAAATATAGCGAGTATATCT+TGG | - | chr4_1:78167145-78167164 | Msa0574570:intron | 25.0% |
| !!! | TTTTAGTTAAGCCCATTTTA+AGG | - | chr4_1:78167185-78167204 | Msa0574570:CDS | 25.0% |
| ! | TTCGGATTATACAATTCAAA+AGG | + | chr4_1:78167347-78167366 | None:intergenic | 25.0% |
| ! | TTCTTATCTCATCAACATTT+CGG | + | chr4_1:78167365-78167384 | None:intergenic | 25.0% |
| GTTATTGTTGGTGTAAGAAA+AGG | + | chr4_1:78164143-78164162 | None:intergenic | 30.0% | |
| ! | AAAACGTTTTGCAACCATTT+TGG | + | chr4_1:78164195-78164214 | None:intergenic | 30.0% |
| ! | TGAATATTGGGTTGTTTGAT+TGG | + | chr4_1:78164315-78164334 | None:intergenic | 30.0% |
| GAGTAATTAATGTACAGTAG+AGG | + | chr4_1:78164462-78164481 | None:intergenic | 30.0% | |
| GGTAATAGGAGAAATTGTTA+TGG | - | chr4_1:78164500-78164519 | Msa0574570:CDS | 30.0% | |
| ATATGATTAGGTGAATGAAG+AGG | - | chr4_1:78164764-78164783 | Msa0574570:intron | 30.0% | |
| ! | AGATTTTCCTCCTAGTAAAA+AGG | - | chr4_1:78165046-78165065 | Msa0574570:CDS | 30.0% |
| ! | CATGATGATTCCTTTTTACT+AGG | + | chr4_1:78165059-78165078 | None:intergenic | 30.0% |
| CTAGTAAAAAGGAATCATCA+TGG | - | chr4_1:78165057-78165076 | Msa0574570:CDS | 30.0% | |
| GAGAATTGAATCTTACTATG+AGG | - | chr4_1:78165144-78165163 | Msa0574570:CDS | 30.0% | |
| AGTTCACTGATAATTCTAGT+TGG | - | chr4_1:78165195-78165214 | Msa0574570:intron | 30.0% | |
| CGATGATCTTTAACAACAAA+AGG | + | chr4_1:78165305-78165324 | None:intergenic | 30.0% | |
| !! | TTTGTTGTTAAAGATCATCG+CGG | - | chr4_1:78165305-78165324 | Msa0574570:CDS | 30.0% |
| GTGATGCATACATATGAAAA+GGG | + | chr4_1:78165594-78165613 | None:intergenic | 30.0% | |
| AGTTAACTAATCTAGTTACC+TGG | - | chr4_1:78165619-78165638 | Msa0574570:intron | 30.0% | |
| ACACAACTATAGGACTAAAA+AGG | + | chr4_1:78165829-78165848 | None:intergenic | 30.0% | |
| ATTCTTTCTGACACAACTAT+AGG | + | chr4_1:78165839-78165858 | None:intergenic | 30.0% | |
| TAACAAACCAACTATGGAAA+GGG | + | chr4_1:78165903-78165922 | None:intergenic | 30.0% | |
| ATAACAAACCAACTATGGAA+AGG | + | chr4_1:78165904-78165923 | None:intergenic | 30.0% | |
| !! | GGTTTGTTATATCTTGGTTA+AGG | - | chr4_1:78165914-78165933 | Msa0574570:intron | 30.0% |
| !!! | CTTTTGAGGTCAATTTTTTG+TGG | + | chr4_1:78166069-78166088 | None:intergenic | 30.0% |
| CACAAAAAATTGACCTCAAA+AGG | - | chr4_1:78166067-78166086 | Msa0574570:intron | 30.0% | |
| ! | TGGTATTGCAATCAGATTTT+AGG | - | chr4_1:78166253-78166272 | Msa0574570:CDS | 30.0% |
| TTTGGCATATTGCATTCAAA+TGG | + | chr4_1:78166381-78166400 | None:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | - | chr4_1:78166381-78166400 | Msa0574570:CDS | 30.0% | |
| !!! | TTTTTTGTATATCACACGAC+AGG | - | chr4_1:78166780-78166799 | Msa0574570:intron | 30.0% |
| !! | CACAACTATAATGGACAAAT+AGG | - | chr4_1:78166894-78166913 | Msa0574570:CDS | 30.0% |
| TGTGAATCTAAGAAGCTATA+AGG | + | chr4_1:78166972-78166991 | None:intergenic | 30.0% | |
| TTCTTAGATTCACAATCAGA+CGG | - | chr4_1:78166978-78166997 | Msa0574570:intron | 30.0% | |
| CAAAACACATGAAAAAGTAG+CGG | - | chr4_1:78167093-78167112 | Msa0574570:intron | 30.0% | |
| ATTTGACGCAACCTTAAAAT+GGG | + | chr4_1:78167199-78167218 | None:intergenic | 30.0% | |
| TATTTGACGCAACCTTAAAA+TGG | + | chr4_1:78167200-78167219 | None:intergenic | 30.0% | |
| !!! | TTTTAAGGTTGCGTCAAATA+TGG | - | chr4_1:78167200-78167219 | Msa0574570:CDS | 30.0% |
| ! | TTTAAGGTTGCGTCAAATAT+GGG | - | chr4_1:78167201-78167220 | Msa0574570:CDS | 30.0% |
| ! | AAAAAATGTAGGGTGTTTGA+GGG | - | chr4_1:78167311-78167330 | Msa0574570:five_prime_UTR | 30.0% |
| !! | GGGTTGTTTGATTGGTTTAA+GGG | + | chr4_1:78164307-78164326 | None:intergenic | 35.0% |
| !! | TGGGTTGTTTGATTGGTTTA+AGG | + | chr4_1:78164308-78164327 | None:intergenic | 35.0% |
| ! | AACATGCAAAACCTTTTCTC+TGG | - | chr4_1:78164528-78164547 | Msa0574570:CDS | 35.0% |
| CTTACCACTCTTCTAAGTAA+AGG | + | chr4_1:78164561-78164580 | None:intergenic | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | + | chr4_1:78164840-78164859 | None:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | - | chr4_1:78164839-78164858 | Msa0574570:CDS | 35.0% | |
| CTTTCACTTCCAATATTCAC+CGG | - | chr4_1:78164900-78164919 | Msa0574570:intron | 35.0% | |
| ATTCTACTACCGGTGAATAT+TGG | + | chr4_1:78164912-78164931 | None:intergenic | 35.0% | |
| CATGTCTAGTATTCTACTAC+CGG | + | chr4_1:78164922-78164941 | None:intergenic | 35.0% | |
| AGTAGAATACTAGACATGGA+TGG | - | chr4_1:78164924-78164943 | Msa0574570:intron | 35.0% | |
| ATTTCTATCTTGATTGGGTG+AGG | + | chr4_1:78165011-78165030 | None:intergenic | 35.0% | |
| ! | GATGATTCCTTTTTACTAGG+AGG | + | chr4_1:78165056-78165075 | None:intergenic | 35.0% |
| TTCAATTCTCCTGTAAGCAA+TGG | + | chr4_1:78165134-78165153 | None:intergenic | 35.0% | |
| TTGAATCTTACTATGAGGGA+TGG | - | chr4_1:78165149-78165168 | Msa0574570:CDS | 35.0% | |
| CGTGATGCATACATATGAAA+AGG | + | chr4_1:78165595-78165614 | None:intergenic | 35.0% | |
| !! | TCTCTAGAAAGAAAAGCATC+CGG | - | chr4_1:78165791-78165810 | Msa0574570:intron | 35.0% |
| TATTTCCACATTGGTACCAT+AGG | - | chr4_1:78165864-78165883 | Msa0574570:intron | 35.0% | |
| GGGTGAAAATAAAATGCCTA+TGG | + | chr4_1:78165883-78165902 | None:intergenic | 35.0% | |
| ! | ATTTTCACCCTTTCCATAGT+TGG | - | chr4_1:78165893-78165912 | Msa0574570:intron | 35.0% |
| ! | TGCAATCAGATTTTAGGCAT+TGG | - | chr4_1:78166259-78166278 | Msa0574570:CDS | 35.0% |
| TTGGAATGTCAGAGAAAATG+TGG | - | chr4_1:78166278-78166297 | Msa0574570:CDS | 35.0% | |
| TGGAATGTCAGAGAAAATGT+GGG | - | chr4_1:78166279-78166298 | Msa0574570:CDS | 35.0% | |
| ACATGCAAAGACTTGTGTAA+TGG | - | chr4_1:78166315-78166334 | Msa0574570:CDS | 35.0% | |
| CATGCAAAGACTTGTGTAAT+GGG | - | chr4_1:78166316-78166335 | Msa0574570:CDS | 35.0% | |
| !! | TGATGTTAGCTCTAACCATT+TGG | + | chr4_1:78166399-78166418 | None:intergenic | 35.0% |
| ATGGTTAGAGCTAACATCAA+TGG | - | chr4_1:78166400-78166419 | Msa0574570:CDS | 35.0% | |
| ATATGCTAGATGGAATGAGT+TGG | - | chr4_1:78166580-78166599 | Msa0574570:CDS | 35.0% | |
| ! | AACGTTGCTTTGTTAACTCA+AGG | - | chr4_1:78166629-78166648 | Msa0574570:CDS | 35.0% |
| ATGTCACGCTGAATTTCAAT+TGG | + | chr4_1:78166732-78166751 | None:intergenic | 35.0% | |
| !! | ATTGCTTTGAAATTGCTCCA+CGG | + | chr4_1:78166811-78166830 | None:intergenic | 35.0% |
| CTTGAAGCTCTATCAATGAT+TGG | + | chr4_1:78167032-78167051 | None:intergenic | 35.0% | |
| CAATCATTGATAGAGCTTCA+AGG | - | chr4_1:78167030-78167049 | Msa0574570:intron | 35.0% | |
| ! | GAAAAAATGTAGGGTGTTTG+AGG | - | chr4_1:78167310-78167329 | Msa0574570:five_prime_UTR | 35.0% |
| TGAGAAAAGCAGAAGGTTCT+TGG | + | chr4_1:78164055-78164074 | None:intergenic | 40.0% | |
| TGTAAGAAAAGGTTGCAGTG+AGG | + | chr4_1:78164132-78164151 | None:intergenic | 40.0% | |
| GCTTGCTCTGATGTTATTGT+TGG | + | chr4_1:78164155-78164174 | None:intergenic | 40.0% | |
| ACAATAACATCAGAGCAAGC+TGG | - | chr4_1:78164155-78164174 | Msa0574570:three_prime_UTR | 40.0% | |
| GTTCTCATGCGTTTGTCATT+TGG | + | chr4_1:78164248-78164267 | None:intergenic | 40.0% | |
| ACTCTCAATTCTCATGTGAC+AGG | - | chr4_1:78164478-78164497 | Msa0574570:CDS | 40.0% | |
| CTCTCAATTCTCATGTGACA+GGG | - | chr4_1:78164479-78164498 | Msa0574570:CDS | 40.0% | |
| TTCTCATGTGACAGGGTAAT+AGG | - | chr4_1:78164486-78164505 | Msa0574570:CDS | 40.0% | |
| GGAACCTTTACTTAGAAGAG+TGG | - | chr4_1:78164554-78164573 | Msa0574570:CDS | 40.0% | |
| TGATTAGGTGAATGAAGAGG+TGG | - | chr4_1:78164767-78164786 | Msa0574570:intron | 40.0% | |
| !! | GACTTTGTTATTGATCGTGG+TGG | + | chr4_1:78164816-78164835 | None:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | + | chr4_1:78164819-78164838 | None:intergenic | 40.0% |
| CGGTAGTAGAATACTAGACA+TGG | - | chr4_1:78164920-78164939 | Msa0574570:intron | 40.0% | |
| GTAGACTTGTAGGGACTATT+TGG | + | chr4_1:78164989-78165008 | None:intergenic | 40.0% | |
| GTGAACTCAATATCCCCAAT+TGG | + | chr4_1:78165182-78165201 | None:intergenic | 40.0% | |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | - | chr4_1:78165240-78165259 | Msa0574570:intron | 40.0% |
| ! | CAAAGTGTCCGAATTCTTGA+AGG | - | chr4_1:78165269-78165288 | Msa0574570:intron | 40.0% |
| CAGTCATGCCTTCAAGAATT+CGG | + | chr4_1:78165280-78165299 | None:intergenic | 40.0% | |
| CTAGTTACCTGGTATGTACT+TGG | - | chr4_1:78165630-78165649 | Msa0574570:intron | 40.0% | |
| ATTACCACCAAGTACATACC+AGG | + | chr4_1:78165640-78165659 | None:intergenic | 40.0% | |
| AAATGCCTATGGTACCAATG+TGG | + | chr4_1:78165872-78165891 | None:intergenic | 40.0% | |
| ! | CTTCGTCCTTTAGATTTGGT+GGG | + | chr4_1:78166009-78166028 | None:intergenic | 40.0% |
| ACTTCGTCCTTTAGATTTGG+TGG | + | chr4_1:78166010-78166029 | None:intergenic | 40.0% | |
| CACACTTCGTCCTTTAGATT+TGG | + | chr4_1:78166013-78166032 | None:intergenic | 40.0% | |
| CAAATCTAAAGGACGAAGTG+TGG | - | chr4_1:78166011-78166030 | Msa0574570:intron | 40.0% | |
| GTGTGGCGTTTAGAGAAAAT+TGG | - | chr4_1:78166028-78166047 | Msa0574570:intron | 40.0% | |
| AACAAACGTTATGTCTACCG+TGG | - | chr4_1:78166340-78166359 | Msa0574570:CDS | 40.0% | |
| ATGTTGCAAATGTCTCGGTT+GGG | + | chr4_1:78166436-78166455 | None:intergenic | 40.0% | |
| TGTCCATGTTGCAAATGTCT+CGG | + | chr4_1:78166441-78166460 | None:intergenic | 40.0% | |
| AGACATTTGCAACATGGACA+AGG | - | chr4_1:78166441-78166460 | Msa0574570:CDS | 40.0% | |
| ! | TGAGAGAAGCATATGCTAGA+TGG | - | chr4_1:78166570-78166589 | Msa0574570:CDS | 40.0% |
| TTTGTATATCACACGACAGG+TGG | - | chr4_1:78166783-78166802 | Msa0574570:intron | 40.0% | |
| CTCGAGACTCACAACTATAA+TGG | - | chr4_1:78166885-78166904 | Msa0574570:CDS | 40.0% | |
| ! | ATGAATGGTGATGTGGGAAA+TGG | + | chr4_1:78166936-78166955 | None:intergenic | 40.0% |
| ! | CCATTCATGAATGGTGATGT+GGG | + | chr4_1:78166942-78166961 | None:intergenic | 40.0% |
| GGTATGATGCCATTCATGAA+TGG | + | chr4_1:78166951-78166970 | None:intergenic | 40.0% | |
| TTAGATTCACAATCAGACGG+TGG | - | chr4_1:78166981-78167000 | Msa0574570:intron | 40.0% | |
| ! | ATGATTGGTCCTGAACTTGA+AGG | + | chr4_1:78167017-78167036 | None:intergenic | 40.0% |
| TCATTGATAGAGCTTCAAGG+TGG | - | chr4_1:78167033-78167052 | Msa0574570:intron | 40.0% | |
| ACACATGAAAAAGTAGCGGT+TGG | - | chr4_1:78167097-78167116 | Msa0574570:intron | 40.0% | |
| !!! | TATGGGCGTTGTTTCTCTTT+TGG | - | chr4_1:78167218-78167237 | Msa0574570:CDS | 40.0% |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | - | chr4_1:78164533-78164552 | Msa0574570:CDS | 45.0% |
| AAGGTTCCAAGCCAGAGAAA+AGG | + | chr4_1:78164542-78164561 | None:intergenic | 45.0% | |
| TTGGGTGAGGTAGACTTGTA+GGG | + | chr4_1:78164998-78165017 | None:intergenic | 45.0% | |
| ATTGGGTGAGGTAGACTTGT+AGG | + | chr4_1:78164999-78165018 | None:intergenic | 45.0% | |
| !! | GGAATCATCATGGACTAGTG+AGG | - | chr4_1:78165067-78165086 | Msa0574570:CDS | 45.0% |
| GGGAAAAGACCATTGCTTAC+AGG | - | chr4_1:78165122-78165141 | Msa0574570:CDS | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | - | chr4_1:78165164-78165183 | Msa0574570:intron | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | - | chr4_1:78165165-78165184 | Msa0574570:intron | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | - | chr4_1:78165166-78165185 | Msa0574570:intron | 45.0% | |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | - | chr4_1:78165239-78165258 | Msa0574570:intron | 45.0% |
| GTTACCTGGTATGTACTTGG+TGG | - | chr4_1:78165633-78165652 | Msa0574570:intron | 45.0% | |
| !! | AAAGAAAAGCATCCGGTTCC+AGG | - | chr4_1:78165798-78165817 | Msa0574570:intron | 45.0% |
| !! | AAGAAAAGCATCCGGTTCCA+GGG | - | chr4_1:78165799-78165818 | Msa0574570:intron | 45.0% |
| AAAAAGGTTGACCCTGGAAC+CGG | + | chr4_1:78165813-78165832 | None:intergenic | 45.0% | |
| AGGACTAAAAAGGTTGACCC+TGG | + | chr4_1:78165819-78165838 | None:intergenic | 45.0% | |
| ACACCACCCACCAAATCTAA+AGG | - | chr4_1:78166000-78166019 | Msa0574570:intron | 45.0% | |
| ! | CACTGTGGTAATCCCTTTTG+AGG | + | chr4_1:78166083-78166102 | None:intergenic | 45.0% |
| CTTGAGAAACTCTTGCACTG+TGG | + | chr4_1:78166098-78166117 | None:intergenic | 45.0% | |
| TGTCCGTAGTTGATCCTCAT+AGG | - | chr4_1:78166119-78166138 | Msa0574570:CDS | 45.0% | |
| GAGCCTATGAGGATCAACTA+CGG | + | chr4_1:78166125-78166144 | None:intergenic | 45.0% | |
| TGATCCTCATAGGCTCAGAA+AGG | - | chr4_1:78166129-78166148 | Msa0574570:CDS | 45.0% | |
| TGTACCTTTCTGAGCCTATG+AGG | + | chr4_1:78166136-78166155 | None:intergenic | 45.0% | |
| GGATGATAAATTGGGGTCCA+CGG | + | chr4_1:78166360-78166379 | None:intergenic | 45.0% | |
| CATGTTGCAAATGTCTCGGT+TGG | + | chr4_1:78166437-78166456 | None:intergenic | 45.0% | |
| CAACCGAGACATTTGCAACA+TGG | - | chr4_1:78166435-78166454 | Msa0574570:CDS | 45.0% | |
| ! | TGCTAGATGGAATGAGTTGG+AGG | - | chr4_1:78166583-78166602 | Msa0574570:CDS | 45.0% |
| TGGACAAATAGGTTGCATCG+AGG | - | chr4_1:78166905-78166924 | Msa0574570:CDS | 45.0% | |
| GGACAAATAGGTTGCATCGA+GGG | - | chr4_1:78166906-78166925 | Msa0574570:CDS | 45.0% | |
| GACAAATAGGTTGCATCGAG+GGG | - | chr4_1:78166907-78166926 | Msa0574570:CDS | 45.0% | |
| ! | AATGGTGATGTGGGAAATGG+TGG | + | chr4_1:78166933-78166952 | None:intergenic | 45.0% |
| CCCACATCACCATTCATGAA+TGG | - | chr4_1:78166939-78166958 | Msa0574570:intron | 45.0% | |
| ! | GCCATTCATGAATGGTGATG+TGG | + | chr4_1:78166943-78166962 | None:intergenic | 45.0% |
| ! | GATCTAACGCCTTCAAGTTC+AGG | - | chr4_1:78167005-78167024 | Msa0574570:intron | 45.0% |
| TTCATAACCCGAACCAAGTG+TGG | + | chr4_1:78167282-78167301 | None:intergenic | 45.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | + | chr4_1:78165260-78165279 | None:intergenic | 50.0% |
| !! | CGTCCTTTAGATTTGGTGGG+TGG | + | chr4_1:78166006-78166025 | None:intergenic | 50.0% |
| GCAAATGTCTCGGTTGGGAA+TGG | + | chr4_1:78166431-78166450 | None:intergenic | 50.0% | |
| ! | CTTTTCCCACTCTCCACACT+TGG | - | chr4_1:78167266-78167285 | Msa0574570:five_prime_UTR | 50.0% |
| CCGAACCAAGTGTGGAGAGT+GGG | + | chr4_1:78167274-78167293 | None:intergenic | 55.0% | |
| CCCACTCTCCACACTTGGTT+CGG | - | chr4_1:78167271-78167290 | Msa0574570:five_prime_UTR | 55.0% | |
| CCACTCTCCACACTTGGTTC+GGG | - | chr4_1:78167272-78167291 | Msa0574570:five_prime_UTR | 55.0% | |
| TCACACGACAGGTGGAACCG+TGG | - | chr4_1:78166791-78166810 | Msa0574570:intron | 60.0% | |
| CCCGAACCAAGTGTGGAGAG+TGG | + | chr4_1:78167275-78167294 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78164051 | 78167390 | 78164051 | ID=Msa0574570;Name=Msa0574570 |
| chr4_1 | mRNA | 78164051 | 78167390 | 78164051 | ID=Msa0574570-mRNA-1;Parent=Msa0574570;Name=Msa0574570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|1|1|1|1|1|7|329|481 |
| chr4_1 | exon | 78164051 | 78164639 | 78164051 | ID=Msa0574570-mRNA-1:exon:27699;Parent=Msa0574570-mRNA-1 |
| chr4_1 | exon | 78164791 | 78164890 | 78164791 | ID=Msa0574570-mRNA-1:exon:27698;Parent=Msa0574570-mRNA-1 |
| chr4_1 | exon | 78164979 | 78165173 | 78164979 | ID=Msa0574570-mRNA-1:exon:27697;Parent=Msa0574570-mRNA-1 |
| chr4_1 | exon | 78165291 | 78165451 | 78165291 | ID=Msa0574570-mRNA-1:exon:27696;Parent=Msa0574570-mRNA-1 |
| chr4_1 | exon | 78166109 | 78166667 | 78166109 | ID=Msa0574570-mRNA-1:exon:27695;Parent=Msa0574570-mRNA-1 |
| chr4_1 | exon | 78166866 | 78166941 | 78166866 | ID=Msa0574570-mRNA-1:exon:27694;Parent=Msa0574570-mRNA-1 |
| chr4_1 | exon | 78167150 | 78167390 | 78167150 | ID=Msa0574570-mRNA-1:exon:27693;Parent=Msa0574570-mRNA-1 |
| chr4_1 | five_prime_UTR | 78167245 | 78167390 | 78167245 | ID=Msa0574570-mRNA-1:five_prime_utr;Parent=Msa0574570-mRNA-1 |
| chr4_1 | CDS | 78167150 | 78167244 | 78167150 | ID=Msa0574570-mRNA-1:cds;Parent=Msa0574570-mRNA-1 |
| chr4_1 | CDS | 78166866 | 78166941 | 78166866 | ID=Msa0574570-mRNA-1:cds;Parent=Msa0574570-mRNA-1 |
| chr4_1 | CDS | 78166109 | 78166667 | 78166109 | ID=Msa0574570-mRNA-1:cds;Parent=Msa0574570-mRNA-1 |
| chr4_1 | CDS | 78165291 | 78165451 | 78165291 | ID=Msa0574570-mRNA-1:cds;Parent=Msa0574570-mRNA-1 |
| chr4_1 | CDS | 78164979 | 78165173 | 78164979 | ID=Msa0574570-mRNA-1:cds;Parent=Msa0574570-mRNA-1 |
| chr4_1 | CDS | 78164791 | 78164890 | 78164791 | ID=Msa0574570-mRNA-1:cds;Parent=Msa0574570-mRNA-1 |
| chr4_1 | CDS | 78164380 | 78164639 | 78164380 | ID=Msa0574570-mRNA-1:cds;Parent=Msa0574570-mRNA-1 |
| chr4_1 | three_prime_UTR | 78164051 | 78164379 | 78164051 | ID=Msa0574570-mRNA-1:three_prime_utr;Parent=Msa0574570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
