Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353880 | XP_003630882.1 | 91.824 | 477 | 35 | 4 | 1 | 476 | 1 | 474 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353880 | sp|Q9C9T2|SARD1_ARATH | 50.704 | 426 | 190 | 11 | 1 | 420 | 1 | 412 | 7.87e-138 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353880 | G7L9S5 | 91.824 | 477 | 35 | 4 | 1 | 476 | 1 | 474 | 0.0 | 885 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa1353880 | 0.803546 | 3.310721e-49 | -8.615850e-47 |
| Msa0013280 | Msa1353880 | 0.835398 | 1.717726e-56 | -8.615850e-47 |
| Msa0086540 | Msa1353880 | 0.808122 | 3.616319e-50 | -8.615850e-47 |
| Msa0091930 | Msa1353880 | 0.808236 | 3.419805e-50 | -8.615850e-47 |
| Msa0106530 | Msa1353880 | 0.825473 | 4.599597e-54 | -8.615850e-47 |
| Msa1344890 | Msa1353880 | 0.806067 | 9.849239e-50 | -8.615850e-47 |
| Msa1353870 | Msa1353880 | 0.920122 | 1.908013e-87 | -8.615850e-47 |
| Msa1353880 | Msa1376450 | 0.809763 | 1.611410e-50 | -8.615850e-47 |
| Msa1353880 | Msa1398900 | 0.814223 | 1.718960e-51 | -8.615850e-47 |
| Msa1353880 | Msa1405820 | 0.803365 | 3.610001e-49 | -8.615850e-47 |
| Msa0662580 | Msa1353880 | 0.812671 | 3.769664e-51 | -8.615850e-47 |
| Msa0708290 | Msa1353880 | 0.927961 | 5.657654e-92 | -8.615850e-47 |
| Msa0708300 | Msa1353880 | 0.966949 | 1.311409e-126 | -8.615850e-47 |
| Msa0745070 | Msa1353880 | 0.805262 | 1.453405e-49 | -8.615850e-47 |
| Msa0780350 | Msa1353880 | 0.815130 | 1.082482e-51 | -8.615850e-47 |
| Msa0834030 | Msa1353880 | 0.811569 | 6.556119e-51 | -8.615850e-47 |
| Msa0235720 | Msa1353880 | 0.815081 | 1.109742e-51 | -8.615850e-47 |
| Msa1236730 | Msa1353880 | 0.818032 | 2.421646e-52 | -8.615850e-47 |
| Msa1269660 | Msa1353880 | 0.800647 | 1.306784e-48 | -8.615850e-47 |
| Msa1317130 | Msa1353880 | 0.807044 | 6.125651e-50 | -8.615850e-47 |
| Msa0377800 | Msa1353880 | 0.837943 | 3.856162e-57 | -8.615850e-47 |
| Msa0426600 | Msa1353880 | 0.825735 | 3.985449e-54 | -8.615850e-47 |
| Msa0472910 | Msa1353880 | 0.827470 | 1.536776e-54 | -8.615850e-47 |
| Msa0982780 | Msa1353880 | 0.803924 | 2.763313e-49 | -8.615850e-47 |
| Msa0314180 | Msa1353880 | 0.827246 | 1.739202e-54 | -8.615850e-47 |
| Msa0517570 | Msa1353880 | 0.836960 | 6.887264e-57 | -8.615850e-47 |
| Msa0524440 | Msa1353880 | 0.804944 | 1.693486e-49 | -8.615850e-47 |
| Msa0574570 | Msa1353880 | 0.916394 | 1.878377e-85 | -8.615850e-47 |
| Msa0574580 | Msa1353880 | 0.907160 | 6.839170e-81 | -8.615850e-47 |
| Msa0914290 | Msa1353880 | 0.804278 | 2.332917e-49 | -8.615850e-47 |
| Msa0936530 | Msa1353880 | 0.834359 | 3.137224e-56 | -8.615850e-47 |
| Msa0936550 | Msa1353880 | 0.852140 | 5.613000e-61 | -8.615850e-47 |
| Msa0952360 | Msa1353880 | 0.805948 | 1.043076e-49 | -8.615850e-47 |
| Msa0973520 | Msa1353880 | 0.829011 | 6.532613e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353880 | MtrunA17_Chr8g0391221 | 91.824 | 477 | 35 | 4 | 1 | 476 | 1 | 474 | 0.0 | 885 |
| Msa1353880 | MtrunA17_Chr8g0391211 | 86.792 | 477 | 57 | 6 | 1 | 475 | 72 | 544 | 0.0 | 833 |
| Msa1353880 | MtrunA17_Chr6g0484111 | 63.223 | 484 | 163 | 13 | 1 | 475 | 1 | 478 | 0.0 | 601 |
| Msa1353880 | MtrunA17_Chr6g0484131 | 62.994 | 481 | 161 | 11 | 1 | 475 | 1 | 470 | 0.0 | 591 |
| Msa1353880 | MtrunA17_Chr6g0484121 | 62.786 | 481 | 162 | 11 | 1 | 475 | 1 | 470 | 0.0 | 586 |
| Msa1353880 | MtrunA17_Chr2g0281171 | 44.737 | 418 | 209 | 8 | 4 | 416 | 16 | 416 | 5.03e-118 | 359 |
| Msa1353880 | MtrunA17_Chr4g0048161 | 46.114 | 386 | 196 | 5 | 2 | 384 | 13 | 389 | 1.63e-114 | 350 |
| Msa1353880 | MtrunA17_Chr4g0072691 | 49.020 | 357 | 176 | 4 | 31 | 384 | 4 | 357 | 3.52e-113 | 346 |
| Msa1353880 | MtrunA17_Chr2g0304831 | 39.203 | 477 | 265 | 10 | 4 | 461 | 11 | 481 | 7.51e-108 | 332 |
| Msa1353880 | MtrunA17_Chr4g0059411 | 49.541 | 327 | 151 | 7 | 1 | 326 | 1 | 314 | 5.43e-93 | 292 |
| Msa1353880 | MtrunA17_Chr7g0271691 | 35.933 | 359 | 213 | 8 | 50 | 403 | 44 | 390 | 3.97e-55 | 192 |
| Msa1353880 | MtrunA17_Chr7g0271671 | 35.174 | 344 | 198 | 10 | 50 | 381 | 60 | 390 | 4.41e-46 | 168 |
| Msa1353880 | MtrunA17_Chr7g0271681 | 39.623 | 265 | 148 | 6 | 92 | 350 | 10 | 268 | 8.90e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353880 | AT1G73805.1 | 50.704 | 426 | 190 | 11 | 1 | 420 | 1 | 412 | 8.00e-139 | 407 |
| Msa1353880 | AT5G57580.1 | 48.837 | 387 | 182 | 7 | 3 | 384 | 12 | 387 | 2.15e-116 | 356 |
| Msa1353880 | AT4G25800.1 | 47.409 | 386 | 187 | 7 | 4 | 384 | 2 | 376 | 3.83e-113 | 346 |
| Msa1353880 | AT4G25800.2 | 47.409 | 386 | 187 | 7 | 4 | 384 | 2 | 376 | 3.83e-113 | 346 |
| Msa1353880 | AT2G18750.3 | 45.910 | 379 | 193 | 6 | 8 | 384 | 21 | 389 | 1.01e-110 | 340 |
| Msa1353880 | AT2G18750.2 | 45.910 | 379 | 193 | 6 | 8 | 384 | 21 | 389 | 1.01e-110 | 340 |
| Msa1353880 | AT2G18750.1 | 45.910 | 379 | 193 | 6 | 8 | 384 | 21 | 389 | 1.01e-110 | 340 |
| Msa1353880 | AT2G24300.2 | 43.814 | 388 | 209 | 5 | 4 | 387 | 3 | 385 | 6.16e-103 | 320 |
| Msa1353880 | AT2G24300.3 | 43.814 | 388 | 209 | 5 | 4 | 387 | 7 | 389 | 7.55e-103 | 320 |
| Msa1353880 | AT4G31000.1 | 43.117 | 385 | 205 | 7 | 17 | 397 | 21 | 395 | 7.16e-99 | 308 |
| Msa1353880 | AT5G62570.1 | 42.239 | 393 | 204 | 9 | 1 | 385 | 1 | 378 | 1.04e-93 | 293 |
| Msa1353880 | AT5G62570.4 | 42.328 | 378 | 196 | 8 | 1 | 370 | 1 | 364 | 1.74e-93 | 288 |
| Msa1353880 | AT5G62570.2 | 43.396 | 371 | 195 | 7 | 21 | 385 | 2 | 363 | 3.56e-93 | 291 |
| Msa1353880 | AT2G24300.1 | 43.243 | 333 | 184 | 3 | 58 | 387 | 8 | 338 | 1.53e-87 | 278 |
| Msa1353880 | AT5G62570.3 | 44.089 | 313 | 157 | 7 | 1 | 309 | 1 | 299 | 7.25e-74 | 235 |
| Msa1353880 | AT4G31000.2 | 39.244 | 344 | 182 | 7 | 58 | 397 | 54 | 374 | 1.64e-73 | 241 |
| Msa1353880 | AT5G26920.3 | 36.785 | 367 | 200 | 10 | 29 | 385 | 24 | 368 | 2.71e-70 | 229 |
| Msa1353880 | AT5G26920.1 | 37.057 | 367 | 199 | 11 | 29 | 385 | 24 | 368 | 2.17e-69 | 231 |
| Msa1353880 | AT5G26920.2 | 36.785 | 367 | 192 | 12 | 29 | 385 | 24 | 360 | 1.08e-66 | 224 |
Find 128 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATCAAAACAACTATTT+TGG | 0.186437 | tig0014103:+94056 | Msa1353880:CDS |
| TTATAAGATTGTTTGAAATA+TGG | 0.200897 | tig0014103:+94600 | Msa1353880:three_prime_UTR |
| TCCTAAATTCTTTACCAAAA+TGG | 0.210918 | tig0014103:+91301 | Msa1353880:exon |
| AACATGAATTGCAAACTTAA+TGG | 0.225284 | tig0014103:-91932 | None:intergenic |
| CCACCGTCTGATTGTGAATC+TGG | 0.259554 | tig0014103:-94203 | None:intergenic |
| TATTTCAAACAATCTTATAA+TGG | 0.279772 | tig0014103:-94597 | None:intergenic |
| TATAAGATTGTTTGAAATAT+GGG | 0.301459 | tig0014103:+94601 | Msa1353880:three_prime_UTR |
| GGGAAAAGGCCATTGCTTAC+AGG | 0.316410 | tig0014103:+92187 | Msa1353880:CDS |
| TGGGAAAAGAAGAAGCTTCT+AGG | 0.321871 | tig0014103:-91177 | None:intergenic |
| ACTACAATTTCTATCTTGAT+TGG | 0.325646 | tig0014103:-92079 | None:intergenic |
| GTTCTTATCCGTTTGTCATT+TGG | 0.329603 | tig0014103:-91368 | None:intergenic |
| CCGAGACATTAACAACATAT+TGG | 0.336958 | tig0014103:+93635 | Msa1353880:CDS |
| ATTTCAAACAATCTTATAAT+GGG | 0.339799 | tig0014103:-94596 | None:intergenic |
| ATTGGGTGTGCTAGACTTGT+AGG | 0.364352 | tig0014103:-92061 | None:intergenic |
| TGTCTGTAGTTGACCCTCTT+AGG | 0.365818 | tig0014103:+93086 | Msa1353880:CDS |
| ATAGAAATTGTAGTCCTTGA+TGG | 0.367797 | tig0014103:+92088 | Msa1353880:CDS |
| GCTTGCTTTGATGTTATTGT+TGG | 0.368262 | tig0014103:-91275 | None:intergenic |
| AGGGATGGAATTGCACCAAT+TGG | 0.372898 | tig0014103:+92229 | Msa1353880:CDS |
| CATGCAAAGACTTGTGTAAT+GGG | 0.381122 | tig0014103:+93513 | Msa1353880:CDS |
| CTAGACTTGTAGGGACGATT+TGG | 0.381484 | tig0014103:-92051 | None:intergenic |
| AACAACAATAATGCACAAAT+AGG | 0.385349 | tig0014103:+94116 | Msa1353880:CDS |
| GGACGATTTGGTCATTGCTT+TGG | 0.388679 | tig0014103:-92039 | None:intergenic |
| ACGTATCCAGCTAGAATTAT+CGG | 0.390207 | tig0014103:-92266 | None:intergenic |
| CGAGACATTAACAACATATT+GGG | 0.396976 | tig0014103:+93636 | Msa1353880:CDS |
| TGATGTTAGCTCTAACCATT+TGG | 0.400701 | tig0014103:-93593 | None:intergenic |
| TCAACAAGAATCACACTGAT+TGG | 0.402570 | tig0014103:-92016 | None:intergenic |
| TTCTCATGTGGCAGGGTGAT+AGG | 0.406355 | tig0014103:+91569 | Msa1353880:intron |
| CACAAATAGGTTGCATCGAC+TGG | 0.407081 | tig0014103:+94129 | Msa1353880:CDS |
| CTACAATTTCTATCTTGATT+GGG | 0.407874 | tig0014103:-92078 | None:intergenic |
| TTTGGCATATTGCATTCAAA+TGG | 0.408571 | tig0014103:-93575 | None:intergenic |
| GTTGTTTGCTACATAGTTGC+CGG | 0.425532 | tig0014103:-94096 | None:intergenic |
| GTGATATAACACCTCATTGA+TGG | 0.429717 | tig0014103:+94225 | Msa1353880:CDS |
| GGGATGGAATTGCACCAATT+GGG | 0.430451 | tig0014103:+92230 | Msa1353880:CDS |
| TGTATTGTGAAAGAGAGAAC+TGG | 0.432059 | tig0014103:+92166 | Msa1353880:CDS |
| TGGGCTCTCACTTTAATCTC+TGG | 0.437542 | tig0014103:+94389 | Msa1353880:three_prime_UTR |
| GGTGCTTGATGATTATTGTT+TGG | 0.438338 | tig0014103:-94023 | None:intergenic |
| CGGTCATGCCTTCACGAATT+CGG | 0.438360 | tig0014103:-92342 | None:intergenic |
| CAAGTCTAAAGGATGAAGTT+TGG | 0.439885 | tig0014103:+92978 | Msa1353880:CDS |
| ACTTCATCCTTTAGACTTGG+TGG | 0.444061 | tig0014103:-92974 | None:intergenic |
| GTTTGGCGTTTAGAGAAGAT+TGG | 0.451746 | tig0014103:+92995 | Msa1353880:CDS |
| TGAGAGAAGCATATGCTAGA+TGG | 0.455078 | tig0014103:+93770 | Msa1353880:CDS |
| AGAGTCTTAGTGTCAAGTCT+TGG | 0.466766 | tig0014103:+94335 | Msa1353880:three_prime_UTR |
| GCATGCAAAGACTTGTGTAA+TGG | 0.469359 | tig0014103:+93512 | Msa1353880:CDS |
| GGTGATAGGAGAAGTGGTTA+TGG | 0.471004 | tig0014103:+91583 | Msa1353880:CDS |
| TTTGAATGCAATATGCCAAA+TGG | 0.472527 | tig0014103:+93578 | Msa1353880:CDS |
| GTTATTGTTGGTTTAAGAAA+AGG | 0.478558 | tig0014103:-91263 | None:intergenic |
| GAGAATTGAATCTTACTATG+AGG | 0.479870 | tig0014103:+92209 | Msa1353880:CDS |
| CAACAAGAATCACACTGATT+GGG | 0.484318 | tig0014103:-92015 | None:intergenic |
| ACCTCATTGATGGAGCTTCA+AGG | 0.484972 | tig0014103:+94235 | Msa1353880:exon |
| GCCACATCACCATTCATGAA+TGG | 0.487146 | tig0014103:+94164 | Msa1353880:CDS |
| AAGGTTCCAAGCCAGAGAAA+AGG | 0.490929 | tig0014103:-91622 | None:intergenic |
| CAAACTTCATCCTTTAGACT+TGG | 0.497266 | tig0014103:-92977 | None:intergenic |
| TGTCTCGGATGGGAATGGTT+TGG | 0.499358 | tig0014103:-93620 | None:intergenic |
| GCATATTGCATTCAAATGGA+TGG | 0.501335 | tig0014103:-93571 | None:intergenic |
| GGTGATAATTGTCTAGAGAC+CGG | 0.501799 | tig0014103:+94077 | Msa1353880:CDS |
| ACATCATCCACCAAGTCTAA+AGG | 0.508840 | tig0014103:+92967 | Msa1353880:CDS |
| CTTACCACTCTTCTAAGTAA+AGG | 0.510684 | tig0014103:-91641 | None:intergenic |
| GTGAACTCAATATCCCCAAT+TGG | 0.516335 | tig0014103:-92244 | None:intergenic |
| CCAATATGTTGTTAATGTCT+CGG | 0.516743 | tig0014103:-93635 | None:intergenic |
| ATTGCTTGAAGTCTCAATGA+AGG | 0.519319 | tig0014103:-91902 | None:intergenic |
| TGAAAGAGAGAACTGGGAAA+AGG | 0.520203 | tig0014103:+92173 | Msa1353880:CDS |
| AGGTTGCAGTGAGTAGCTAT+AGG | 0.521995 | tig0014103:-91243 | None:intergenic |
| CACCGTCTGATTGTGAATCT+GGG | 0.522998 | tig0014103:-94202 | None:intergenic |
| CGGACACTTTGATTAGTCCC+AGG | 0.523841 | tig0014103:-92322 | None:intergenic |
| GTTACCTTTCTGAGCCTAAG+AGG | 0.526278 | tig0014103:-93100 | None:intergenic |
| AACGTTGCTTTGTTAACTCA+AGG | 0.528420 | tig0014103:+93829 | Msa1353880:CDS |
| TATGTTGTTAATGTCTCGGA+TGG | 0.535743 | tig0014103:-93631 | None:intergenic |
| ATGGTTAGAGCTAACATCAA+TGG | 0.535787 | tig0014103:+93597 | Msa1353880:CDS |
| GTTGCTGTTAGAATTGCTCC+TGG | 0.539447 | tig0014103:+92304 | Msa1353880:CDS |
| AACACTGGCCTAGTGAAGGC+AGG | 0.540311 | tig0014103:-94658 | None:intergenic |
| TTGGTATGTCCGAGAAAATG+TGG | 0.540719 | tig0014103:+93475 | Msa1353880:CDS |
| CTTTCACTTCCAATATTCAC+AGG | 0.543526 | tig0014103:+91965 | Msa1353880:CDS |
| AGTTCACCGATAATTCTAGC+TGG | 0.544574 | tig0014103:+92260 | Msa1353880:CDS |
| AAGACAAACCAAATGACAAA+CGG | 0.546324 | tig0014103:+91360 | Msa1353880:CDS |
| TGCTAGATGGAATGAGTTGG+AGG | 0.547803 | tig0014103:+93783 | Msa1353880:CDS |
| TAAGGTAGGCCATTCATGAA+TGG | 0.552824 | tig0014103:-94173 | None:intergenic |
| GTTAATGTCTCGGATGGGAA+TGG | 0.555065 | tig0014103:-93625 | None:intergenic |
| TCTCTGTTTCTAGTTAGACT+AGG | 0.558774 | tig0014103:+94556 | Msa1353880:three_prime_UTR |
| TATGATAAACATAGCAACAC+TGG | 0.559758 | tig0014103:-94673 | None:intergenic |
| TTCAAATGGATGGTAAATTG+AGG | 0.559963 | tig0014103:-93561 | None:intergenic |
| AAAACATACGAAGCAAAAGA+AGG | 0.565396 | tig0014103:-91401 | None:intergenic |
| AGAATTGAATCTTACTATGA+GGG | 0.565949 | tig0014103:+92210 | Msa1353880:CDS |
| AATGCAAACCTGCCTTCACT+AGG | 0.566193 | tig0014103:+94650 | Msa1353880:three_prime_UTR |
| TTACCAAAATGGCTGCAAAA+CGG | 0.566987 | tig0014103:+91312 | Msa1353880:exon |
| TGTGAATCTGGGAAGCTGTA+AGG | 0.567774 | tig0014103:-94191 | None:intergenic |
| TAGAAGGAAAATCTCCATCA+AGG | 0.570001 | tig0014103:-92102 | None:intergenic |
| GCTATAGGTGGAGGAATGAA+AGG | 0.571331 | tig0014103:-91228 | None:intergenic |
| TTGAATCTTACTATGAGGGA+TGG | 0.576141 | tig0014103:+92214 | Msa1353880:CDS |
| GGATGGAATTGCACCAATTG+GGG | 0.580908 | tig0014103:+92231 | Msa1353880:CDS |
| TTCAATTCTCCTGTAAGCAA+TGG | 0.582190 | tig0014103:-92196 | None:intergenic |
| AACTGTTGTAATCCCTTCTG+AGG | 0.582778 | tig0014103:-93047 | None:intergenic |
| TTACCTTTCTGAGCCTAAGA+GGG | 0.582827 | tig0014103:-93099 | None:intergenic |
| ATTGTTTGGAAATTGCTCCA+TGG | 0.588651 | tig0014103:-94009 | None:intergenic |
| TTCATTGAGACTTCAAGCAA+TGG | 0.589164 | tig0014103:+91904 | Msa1353880:CDS |
| CTAGTGAAAATGAATCATCA+TGG | 0.589991 | tig0014103:+92122 | Msa1353880:CDS |
| GGAACCTTTACTTAGAAGAG+TGG | 0.595523 | tig0014103:+91637 | Msa1353880:CDS |
| CAGTGAGTAGCTATAGGTGG+AGG | 0.596371 | tig0014103:-91237 | None:intergenic |
| GGTGACTTTGTTATTGATCG+TGG | 0.600634 | tig0014103:-91881 | None:intergenic |
| TTGGGTGTGCTAGACTTGTA+GGG | 0.601776 | tig0014103:-92060 | None:intergenic |
| TGACCCTCTTAGGCTCAGAA+AGG | 0.602742 | tig0014103:+93096 | Msa1353880:CDS |
| TGGCAGGGTGATAGGAGAAG+TGG | 0.605295 | tig0014103:+91577 | Msa1353880:intron |
| ATCCTTAACAACAAAAGCGT+CGG | 0.615623 | tig0014103:-92362 | None:intergenic |
| AATCTGGGAAGCTGTAAGGT+AGG | 0.616693 | tig0014103:-94187 | None:intergenic |
| ATATGCTAGATGGAATGAGT+TGG | 0.618437 | tig0014103:+93780 | Msa1353880:CDS |
| GACTTTGTTATTGATCGTGG+TGG | 0.621283 | tig0014103:-91878 | None:intergenic |
| ACAATAACATCAAAGCAAGC+TGG | 0.621523 | tig0014103:+91278 | Msa1353880:five_prime_UTR |
| TTGCAGTGAGTAGCTATAGG+TGG | 0.624654 | tig0014103:-91240 | None:intergenic |
| TTAGAGAAGATTGGTAAAGA+CGG | 0.625104 | tig0014103:+93004 | Msa1353880:CDS |
| GTATTGTGAAAGAGAGAACT+GGG | 0.625839 | tig0014103:+92167 | Msa1353880:CDS |
| TTGCTGTTAGAATTGCTCCT+GGG | 0.625923 | tig0014103:+92305 | Msa1353880:CDS |
| CAAAGTGTCCGAATTCGTGA+AGG | 0.626320 | tig0014103:+92334 | Msa1353880:CDS |
| TCACTATACAGGTGAAACCA+TGG | 0.626418 | tig0014103:+93992 | Msa1353880:intron |
| TAGCAACACTGGCCTAGTGA+AGG | 0.627610 | tig0014103:-94662 | None:intergenic |
| AGCAAAATACTAGACACGGA+TGG | 0.635352 | tig0014103:+91989 | Msa1353880:CDS |
| TGAATCATCATGGACTAGTG+AGG | 0.636414 | tig0014103:+92132 | Msa1353880:CDS |
| TTCCCAGATTCACAATCAGA+CGG | 0.636484 | tig0014103:+94200 | Msa1353880:CDS |
| GCCATTCATGAATGGTGATG+TGG | 0.641806 | tig0014103:-94165 | None:intergenic |
| CATTAACAACATATTGGGCA+AGG | 0.646803 | tig0014103:+93641 | Msa1353880:CDS |
| ATGTTGTTAATGTCTCGGAT+GGG | 0.656086 | tig0014103:-93630 | None:intergenic |
| ACCTTGAAGCTCCATCAATG+AGG | 0.663424 | tig0014103:-94236 | None:intergenic |
| AGGTAGCAAAATACTAGACA+CGG | 0.663844 | tig0014103:+91985 | Msa1353880:CDS |
| ATATGATCAGGTGAATGAAG+AGG | 0.666275 | tig0014103:+91829 | Msa1353880:intron |
| AAGAAAACTCACATTCGCCA+CGG | 0.670555 | tig0014103:-92387 | None:intergenic |
| TGGTATGTCCGAGAAAATGT+GGG | 0.700296 | tig0014103:+93476 | Msa1353880:CDS |
| AACAAACTCTATGTCTACCG+CGG | 0.707473 | tig0014103:+93537 | Msa1353880:CDS |
| CCAGATTCACAATCAGACGG+TGG | 0.723625 | tig0014103:+94203 | Msa1353880:CDS |
| GGATGGTAAATTGAGGACCG+CGG | 0.726063 | tig0014103:-93554 | None:intergenic |
| TTTGTTGTTAAGGATCACCG+TGG | 0.730044 | tig0014103:+92370 | Msa1353880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCATTTCAAAATTA+TGG | - | tig0014103:91690-91709 | None:intergenic | 10.0% |
| !! | AAAATAATGAATATATAGTT+AGG | - | tig0014103:93154-93173 | None:intergenic | 10.0% |
| !! | TATACATCATTTATAATTAT+TGG | - | tig0014103:93377-93396 | None:intergenic | 10.0% |
| !! | TATAAATGATGTATATTTAT+AGG | + | tig0014103:93382-93401 | Msa1353880:intron | 10.0% |
| !!! | TCATTTTTTTATATATAGCT+TGG | + | tig0014103:91495-91514 | Msa1353880:intron | 15.0% |
| !! | TATAAATTAGAATATCTTGA+AGG | - | tig0014103:92531-92550 | None:intergenic | 15.0% |
| !!! | TTCTCTATGATTTTTTTTTT+TGG | + | tig0014103:92609-92628 | Msa1353880:intron | 15.0% |
| !! | CATTATTAATGTTCAATAAA+TGG | + | tig0014103:93201-93220 | Msa1353880:intron | 15.0% |
| !! | AAATAACATTCTCAATTATA+TGG | + | tig0014103:93430-93449 | Msa1353880:intron | 15.0% |
| !!! | TACTTTTGGTTAAATAATTT+TGG | - | tig0014103:93897-93916 | None:intergenic | 15.0% |
| !!! | TCTAAATTTCATTTTTCAAT+TGG | - | tig0014103:93925-93944 | None:intergenic | 15.0% |
| !!! | TATATAAAAATTTTAGCAGT+TGG | + | tig0014103:94293-94312 | Msa1353880:three_prime_UTR | 15.0% |
| !! | ATTTCAAACAATCTTATAAT+GGG | - | tig0014103:94599-94618 | None:intergenic | 15.0% |
| !! | TATTTCAAACAATCTTATAA+TGG | - | tig0014103:94600-94619 | None:intergenic | 15.0% |
| !!! | TTATAAGATTGTTTGAAATA+TGG | + | tig0014103:94600-94619 | Msa1353880:three_prime_UTR | 15.0% |
| !!! | TATAAGATTGTTTGAAATAT+GGG | + | tig0014103:94601-94620 | Msa1353880:three_prime_UTR | 15.0% |
| !!! | ACGATTTGAGTTTTATATAT+GGG | - | tig0014103:91199-91218 | None:intergenic | 20.0% |
| !! | TGATAGAATGAATGAATATT+GGG | - | tig0014103:91450-91469 | None:intergenic | 20.0% |
| !! | ATGATAGAATGAATGAATAT+TGG | - | tig0014103:91451-91470 | None:intergenic | 20.0% |
| !! | AAAATTATGGTAAAGTTGAA+TGG | - | tig0014103:91677-91696 | None:intergenic | 20.0% |
| !! | ACTGTTAATTAATGATTAGT+TGG | + | tig0014103:92764-92783 | Msa1353880:intron | 20.0% |
| !!! | TTAATTTATTTTACGGTTGT+TGG | + | tig0014103:92807-92826 | Msa1353880:intron | 20.0% |
| !!! | TAATTTATTTTACGGTTGTT+GGG | + | tig0014103:92808-92827 | Msa1353880:intron | 20.0% |
| !! | TTGGGTTATAACTAAAATAA+AGG | + | tig0014103:92826-92845 | Msa1353880:intron | 20.0% |
| !! | ACTAAAATAAAGGATCATAT+AGG | + | tig0014103:92836-92855 | Msa1353880:intron | 20.0% |
| !! | CTAAAATAAAGGATCATATA+GGG | + | tig0014103:92837-92856 | Msa1353880:intron | 20.0% |
| !! | CTATTACTATAAGACTAAAA+AGG | - | tig0014103:92867-92886 | None:intergenic | 20.0% |
| !!! | GCACAATGTATTTTTATATA+CGG | + | tig0014103:93300-93319 | Msa1353880:intron | 20.0% |
| !! | GCAAATTAAATGAACTATAT+AGG | - | tig0014103:93729-93748 | None:intergenic | 20.0% |
| !!! | TTCAATTGGAAATTTACTTT+TGG | - | tig0014103:93911-93930 | None:intergenic | 20.0% |
| !!! | TTTTGATCATATGTTATAAC+TGG | - | tig0014103:94047-94066 | None:intergenic | 20.0% |
| !!! | TATGATCAAAACAACTATTT+TGG | + | tig0014103:94056-94075 | Msa1353880:CDS | 20.0% |
| !!! | CAAAAGACATTACATTTTTT+GGG | - | tig0014103:94361-94380 | None:intergenic | 20.0% |
| !!! | AGAGAATGAACAATTTTAAA+AGG | + | tig0014103:94514-94533 | Msa1353880:three_prime_UTR | 20.0% |
| !!! | GAGAATGAACAATTTTAAAA+GGG | + | tig0014103:94515-94534 | Msa1353880:three_prime_UTR | 20.0% |
| !!! | CATTTTTTTTTCTACAAAAG+AGG | - | tig0014103:94634-94653 | None:intergenic | 20.0% |
| !!! | GACGATTTGAGTTTTATATA+TGG | - | tig0014103:91200-91219 | None:intergenic | 25.0% |
| !!! | GTTATTGTTGGTTTAAGAAA+AGG | - | tig0014103:91266-91285 | None:intergenic | 25.0% |
| ! | TCCTAAATTCTTTACCAAAA+TGG | + | tig0014103:91301-91320 | Msa1353880:exon | 25.0% |
| !!! | TGAATATTGGGTTTGTTAAT+TGG | - | tig0014103:91438-91457 | None:intergenic | 25.0% |
| ! | TGAGAATTGAGAGTAATTAA+TGG | - | tig0014103:91555-91574 | None:intergenic | 25.0% |
| ! | TGTTGAGATAAATTTAGTCA+CGG | - | tig0014103:91724-91743 | None:intergenic | 25.0% |
| ! | AACATGAATTGCAAACTTAA+TGG | - | tig0014103:91935-91954 | None:intergenic | 25.0% |
| ! | CTACAATTTCTATCTTGATT+GGG | - | tig0014103:92081-92100 | None:intergenic | 25.0% |
| ! | ACTACAATTTCTATCTTGAT+TGG | - | tig0014103:92082-92101 | None:intergenic | 25.0% |
| ! | AGAATTGAATCTTACTATGA+GGG | + | tig0014103:92210-92229 | Msa1353880:CDS | 25.0% |
| ! | TAATGAGAATCCAATATGTT+AGG | + | tig0014103:92439-92458 | Msa1353880:intron | 25.0% |
| ! | AATGAGAATCCAATATGTTA+GGG | + | tig0014103:92440-92459 | Msa1353880:intron | 25.0% |
| ! | TAAAACTAACCCTAACATAT+TGG | - | tig0014103:92452-92471 | None:intergenic | 25.0% |
| ! | AGGGTTTATATAGATTAAGA+TGG | - | tig0014103:93129-93148 | None:intergenic | 25.0% |
| ! | ATGAATATATAGTTAGGAGA+GGG | - | tig0014103:93148-93167 | None:intergenic | 25.0% |
| ! | AATGAATATATAGTTAGGAG+AGG | - | tig0014103:93149-93168 | None:intergenic | 25.0% |
| ! | AAAAACCAATGCATAGAAAA+AGG | - | tig0014103:93704-93723 | None:intergenic | 25.0% |
| ! | TTTATTGAATCTCACTATAC+AGG | + | tig0014103:93981-94000 | Msa1353880:intron | 25.0% |
| ! | AACAACAATAATGCACAAAT+AGG | + | tig0014103:94116-94135 | Msa1353880:CDS | 25.0% |
| !!! | CCAAAAGACATTACATTTTT+TGG | - | tig0014103:94362-94381 | None:intergenic | 25.0% |
| !! | CCAAAAAATGTAATGTCTTT+TGG | + | tig0014103:94359-94378 | Msa1353880:three_prime_UTR | 25.0% |
| !! | GCCATTTTGGTAAAGAATTT+AGG | - | tig0014103:91305-91324 | None:intergenic | 30.0% |
| AAGACAAACCAAATGACAAA+CGG | + | tig0014103:91360-91379 | Msa1353880:CDS | 30.0% | |
| AAAACATACGAAGCAAAAGA+AGG | - | tig0014103:91404-91423 | None:intergenic | 30.0% | |
| !! | TGGGTTTGTTAATTGGTTTA+AGG | - | tig0014103:91431-91450 | None:intergenic | 30.0% |
| ! | GAGTAATTAATGGATAGTAG+AGG | - | tig0014103:91545-91564 | None:intergenic | 30.0% |
| AATTACTCTCAATTCTCATG+TGG | + | tig0014103:91557-91576 | Msa1353880:intron | 30.0% | |
| AGATAAATTTAGTCACGGTA+CGG | - | tig0014103:91719-91738 | None:intergenic | 30.0% | |
| AACATGTCTTTGATATGATC+AGG | + | tig0014103:91817-91836 | Msa1353880:intron | 30.0% | |
| ! | ATTTTGCTACCTGTGAATAT+TGG | - | tig0014103:91977-91996 | None:intergenic | 30.0% |
| ATAGAAATTGTAGTCCTTGA+TGG | + | tig0014103:92088-92107 | Msa1353880:CDS | 30.0% | |
| ! | GATGATTCATTTTCACTAGA+AGG | - | tig0014103:92121-92140 | None:intergenic | 30.0% |
| CTAGTGAAAATGAATCATCA+TGG | + | tig0014103:92122-92141 | Msa1353880:CDS | 30.0% | |
| GAGAATTGAATCTTACTATG+AGG | + | tig0014103:92209-92228 | Msa1353880:CDS | 30.0% | |
| TGTGATGCATTTAAATGAAG+AGG | - | tig0014103:92661-92680 | None:intergenic | 30.0% | |
| TTAGAGAAGATTGGTAAAGA+CGG | + | tig0014103:93004-93023 | Msa1353880:CDS | 30.0% | |
| TTCAAATGGATGGTAAATTG+AGG | - | tig0014103:93564-93583 | None:intergenic | 30.0% | |
| TTTGGCATATTGCATTCAAA+TGG | - | tig0014103:93578-93597 | None:intergenic | 30.0% | |
| TTTGAATGCAATATGCCAAA+TGG | + | tig0014103:93578-93597 | Msa1353880:CDS | 30.0% | |
| CCAATATGTTGTTAATGTCT+CGG | - | tig0014103:93638-93657 | None:intergenic | 30.0% | |
| CGAGACATTAACAACATATT+GGG | + | tig0014103:93636-93655 | Msa1353880:CDS | 30.0% | |
| !!! | TAATGTCTTTTGGCTTATGT+TGG | + | tig0014103:94369-94388 | Msa1353880:three_prime_UTR | 30.0% |
| !!! | AATGTCTTTTGGCTTATGTT+GGG | + | tig0014103:94370-94389 | Msa1353880:three_prime_UTR | 30.0% |
| !! | ACTAGGCTTAGTTATTTTCT+AGG | + | tig0014103:94573-94592 | Msa1353880:three_prime_UTR | 30.0% |
| ! | TTTTCTACAAAAGAGGAACA+AGG | - | tig0014103:94627-94646 | None:intergenic | 30.0% |
| TATGATAAACATAGCAACAC+TGG | - | tig0014103:94676-94695 | None:intergenic | 30.0% | |
| GCTTGCTTTGATGTTATTGT+TGG | - | tig0014103:91278-91297 | None:intergenic | 35.0% | |
| ACAATAACATCAAAGCAAGC+TGG | + | tig0014103:91278-91297 | Msa1353880:five_prime_UTR | 35.0% | |
| TTACCAAAATGGCTGCAAAA+CGG | + | tig0014103:91312-91331 | Msa1353880:exon | 35.0% | |
| GTTCTTATCCGTTTGTCATT+TGG | - | tig0014103:91371-91390 | None:intergenic | 35.0% | |
| ! | AACATGCAAAACCTTTTCTC+TGG | + | tig0014103:91611-91630 | Msa1353880:CDS | 35.0% |
| CTTACCACTCTTCTAAGTAA+AGG | - | tig0014103:91644-91663 | None:intergenic | 35.0% | |
| ATATGATCAGGTGAATGAAG+AGG | + | tig0014103:91829-91848 | Msa1353880:intron | 35.0% | |
| ATTGCTTGAAGTCTCAATGA+AGG | - | tig0014103:91905-91924 | None:intergenic | 35.0% | |
| TTCATTGAGACTTCAAGCAA+TGG | + | tig0014103:91904-91923 | Msa1353880:CDS | 35.0% | |
| CTTTCACTTCCAATATTCAC+AGG | + | tig0014103:91965-91984 | Msa1353880:CDS | 35.0% | |
| AGGTAGCAAAATACTAGACA+CGG | + | tig0014103:91985-92004 | Msa1353880:CDS | 35.0% | |
| ! | CAACAAGAATCACACTGATT+GGG | - | tig0014103:92018-92037 | None:intergenic | 35.0% |
| TCAACAAGAATCACACTGAT+TGG | - | tig0014103:92019-92038 | None:intergenic | 35.0% | |
| TAGAAGGAAAATCTCCATCA+AGG | - | tig0014103:92105-92124 | None:intergenic | 35.0% | |
| TGTATTGTGAAAGAGAGAAC+TGG | + | tig0014103:92166-92185 | Msa1353880:CDS | 35.0% | |
| GTATTGTGAAAGAGAGAACT+GGG | + | tig0014103:92167-92186 | Msa1353880:CDS | 35.0% | |
| TTCAATTCTCCTGTAAGCAA+TGG | - | tig0014103:92199-92218 | None:intergenic | 35.0% | |
| TTGAATCTTACTATGAGGGA+TGG | + | tig0014103:92214-92233 | Msa1353880:CDS | 35.0% | |
| ACGTATCCAGCTAGAATTAT+CGG | - | tig0014103:92269-92288 | None:intergenic | 35.0% | |
| ! | ATCCTTAACAACAAAAGCGT+CGG | - | tig0014103:92365-92384 | None:intergenic | 35.0% |
| AGCTAATTAAACTAGCTACC+TGG | + | tig0014103:92685-92704 | Msa1353880:intron | 35.0% | |
| TAGTGTCATACTCATCAAGT+AGG | - | tig0014103:92897-92916 | None:intergenic | 35.0% | |
| CAAACTTCATCCTTTAGACT+TGG | - | tig0014103:92980-92999 | None:intergenic | 35.0% | |
| CAAGTCTAAAGGATGAAGTT+TGG | + | tig0014103:92978-92997 | Msa1353880:CDS | 35.0% | |
| ACAAAAAGTTGACCTCAGAA+GGG | + | tig0014103:93035-93054 | Msa1353880:CDS | 35.0% | |
| !! | TGGTTTTGCTAGCAGATTTT+AGG | + | tig0014103:93450-93469 | Msa1353880:intron | 35.0% |
| CATGCAAAGACTTGTGTAAT+GGG | + | tig0014103:93513-93532 | Msa1353880:CDS | 35.0% | |
| GCATATTGCATTCAAATGGA+TGG | - | tig0014103:93574-93593 | None:intergenic | 35.0% | |
| !! | TGATGTTAGCTCTAACCATT+TGG | - | tig0014103:93596-93615 | None:intergenic | 35.0% |
| ATGGTTAGAGCTAACATCAA+TGG | + | tig0014103:93597-93616 | Msa1353880:CDS | 35.0% | |
| ATGTTGTTAATGTCTCGGAT+GGG | - | tig0014103:93633-93652 | None:intergenic | 35.0% | |
| TATGTTGTTAATGTCTCGGA+TGG | - | tig0014103:93634-93653 | None:intergenic | 35.0% | |
| CCGAGACATTAACAACATAT+TGG | + | tig0014103:93635-93654 | Msa1353880:CDS | 35.0% | |
| CATTAACAACATATTGGGCA+AGG | + | tig0014103:93641-93660 | Msa1353880:CDS | 35.0% | |
| TAGAAAAAGGTAGCAGTAGA+AGG | - | tig0014103:93691-93710 | None:intergenic | 35.0% | |
| ! | TGCTACCTTTTTCTATGCAT+TGG | + | tig0014103:93696-93715 | Msa1353880:intron | 35.0% |
| ATATGCTAGATGGAATGAGT+TGG | + | tig0014103:93780-93799 | Msa1353880:CDS | 35.0% | |
| ! | AACGTTGCTTTGTTAACTCA+AGG | + | tig0014103:93829-93848 | Msa1353880:CDS | 35.0% |
| ATTGTTTGGAAATTGCTCCA+TGG | - | tig0014103:94012-94031 | None:intergenic | 35.0% | |
| ! | GGTGCTTGATGATTATTGTT+TGG | - | tig0014103:94026-94045 | None:intergenic | 35.0% |
| GTGATATAACACCTCATTGA+TGG | + | tig0014103:94225-94244 | Msa1353880:CDS | 35.0% | |
| !! | TCTCTGTTTCTAGTTAGACT+AGG | + | tig0014103:94556-94575 | Msa1353880:three_prime_UTR | 35.0% |
| TGGGAAAAGAAGAAGCTTCT+AGG | - | tig0014103:91180-91199 | None:intergenic | 40.0% | |
| ! | AAACCGTTTTGCAGCCATTT+TGG | - | tig0014103:91318-91337 | None:intergenic | 40.0% |
| GGAACCTTTACTTAGAAGAG+TGG | + | tig0014103:91637-91656 | Msa1353880:CDS | 40.0% | |
| !! | GACTTTGTTATTGATCGTGG+TGG | - | tig0014103:91881-91900 | None:intergenic | 40.0% |
| !! | GGTGACTTTGTTATTGATCG+TGG | - | tig0014103:91884-91903 | None:intergenic | 40.0% |
| AGCAAAATACTAGACACGGA+TGG | + | tig0014103:91989-92008 | Msa1353880:CDS | 40.0% | |
| !! | TGAATCATCATGGACTAGTG+AGG | + | tig0014103:92132-92151 | Msa1353880:CDS | 40.0% |
| TGAAAGAGAGAACTGGGAAA+AGG | + | tig0014103:92173-92192 | Msa1353880:CDS | 40.0% | |
| GTGAACTCAATATCCCCAAT+TGG | - | tig0014103:92247-92266 | None:intergenic | 40.0% | |
| AGTTCACCGATAATTCTAGC+TGG | + | tig0014103:92260-92279 | Msa1353880:CDS | 40.0% | |
| ! | TTGCTGTTAGAATTGCTCCT+GGG | + | tig0014103:92305-92324 | Msa1353880:CDS | 40.0% |
| !! | TTTGTTGTTAAGGATCACCG+TGG | + | tig0014103:92370-92389 | Msa1353880:CDS | 40.0% |
| AAGAAAACTCACATTCGCCA+CGG | - | tig0014103:92390-92409 | None:intergenic | 40.0% | |
| GCTACCTGGTATATATGCTT+TGG | + | tig0014103:92699-92718 | Msa1353880:intron | 40.0% | |
| ACCTGGTATATATGCTTTGG+TGG | + | tig0014103:92702-92721 | Msa1353880:intron | 40.0% | |
| ACCACCAAAGCATATATACC+AGG | - | tig0014103:92706-92725 | None:intergenic | 40.0% | |
| ACATCATCCACCAAGTCTAA+AGG | + | tig0014103:92967-92986 | Msa1353880:CDS | 40.0% | |
| ACTTCATCCTTTAGACTTGG+TGG | - | tig0014103:92977-92996 | None:intergenic | 40.0% | |
| GTTTGGCGTTTAGAGAAGAT+TGG | + | tig0014103:92995-93014 | Msa1353880:CDS | 40.0% | |
| CACAAAAAGTTGACCTCAGA+AGG | + | tig0014103:93034-93053 | Msa1353880:CDS | 40.0% | |
| AACTGTTGTAATCCCTTCTG+AGG | - | tig0014103:93050-93069 | None:intergenic | 40.0% | |
| TTACCTTTCTGAGCCTAAGA+GGG | - | tig0014103:93102-93121 | None:intergenic | 40.0% | |
| TTGGTATGTCCGAGAAAATG+TGG | + | tig0014103:93475-93494 | Msa1353880:CDS | 40.0% | |
| TGGTATGTCCGAGAAAATGT+GGG | + | tig0014103:93476-93495 | Msa1353880:CDS | 40.0% | |
| ! | TGTCACATCCCACATTTTCT+CGG | - | tig0014103:93487-93506 | None:intergenic | 40.0% |
| GCATGCAAAGACTTGTGTAA+TGG | + | tig0014103:93512-93531 | Msa1353880:CDS | 40.0% | |
| AACAAACTCTATGTCTACCG+CGG | + | tig0014103:93537-93556 | Msa1353880:CDS | 40.0% | |
| ! | TGAGAGAAGCATATGCTAGA+TGG | + | tig0014103:93770-93789 | Msa1353880:CDS | 40.0% |
| TCACTATACAGGTGAAACCA+TGG | + | tig0014103:93992-94011 | Msa1353880:intron | 40.0% | |
| GGTGATAATTGTCTAGAGAC+CGG | + | tig0014103:94077-94096 | Msa1353880:CDS | 40.0% | |
| ! | GTTGTTTGCTACATAGTTGC+CGG | - | tig0014103:94099-94118 | None:intergenic | 40.0% |
| TAAGGTAGGCCATTCATGAA+TGG | - | tig0014103:94176-94195 | None:intergenic | 40.0% | |
| TTCCCAGATTCACAATCAGA+CGG | + | tig0014103:94200-94219 | Msa1353880:CDS | 40.0% | |
| AGAGTCTTAGTGTCAAGTCT+TGG | + | tig0014103:94335-94354 | Msa1353880:three_prime_UTR | 40.0% | |
| GCTATAGGTGGAGGAATGAA+AGG | - | tig0014103:91231-91250 | None:intergenic | 45.0% | |
| TTGCAGTGAGTAGCTATAGG+TGG | - | tig0014103:91243-91262 | None:intergenic | 45.0% | |
| AGGTTGCAGTGAGTAGCTAT+AGG | - | tig0014103:91246-91265 | None:intergenic | 45.0% | |
| ACTCTCAATTCTCATGTGGC+AGG | + | tig0014103:91561-91580 | Msa1353880:intron | 45.0% | |
| CTCTCAATTCTCATGTGGCA+GGG | + | tig0014103:91562-91581 | Msa1353880:intron | 45.0% | |
| GGTGATAGGAGAAGTGGTTA+TGG | + | tig0014103:91583-91602 | Msa1353880:CDS | 45.0% | |
| ! | GCAAAACCTTTTCTCTGGCT+TGG | + | tig0014103:91616-91635 | Msa1353880:CDS | 45.0% |
| AAGGTTCCAAGCCAGAGAAA+AGG | - | tig0014103:91625-91644 | None:intergenic | 45.0% | |
| !! | GGACGATTTGGTCATTGCTT+TGG | - | tig0014103:92042-92061 | None:intergenic | 45.0% |
| CTAGACTTGTAGGGACGATT+TGG | - | tig0014103:92054-92073 | None:intergenic | 45.0% | |
| TTGGGTGTGCTAGACTTGTA+GGG | - | tig0014103:92063-92082 | None:intergenic | 45.0% | |
| ATTGGGTGTGCTAGACTTGT+AGG | - | tig0014103:92064-92083 | None:intergenic | 45.0% | |
| AGGGATGGAATTGCACCAAT+TGG | + | tig0014103:92229-92248 | Msa1353880:CDS | 45.0% | |
| GGGATGGAATTGCACCAATT+GGG | + | tig0014103:92230-92249 | Msa1353880:CDS | 45.0% | |
| GGATGGAATTGCACCAATTG+GGG | + | tig0014103:92231-92250 | Msa1353880:CDS | 45.0% | |
| ! | GTTGCTGTTAGAATTGCTCC+TGG | + | tig0014103:92304-92323 | Msa1353880:CDS | 45.0% |
| ! | CAAAGTGTCCGAATTCGTGA+AGG | + | tig0014103:92334-92353 | Msa1353880:CDS | 45.0% |
| !!! | GACCGACGCTTTTGTTGTTA+AGG | + | tig0014103:92360-92379 | Msa1353880:CDS | 45.0% |
| TGTCTGTAGTTGACCCTCTT+AGG | + | tig0014103:93086-93105 | Msa1353880:CDS | 45.0% | |
| GTTACCTTTCTGAGCCTAAG+AGG | - | tig0014103:93103-93122 | None:intergenic | 45.0% | |
| ! | TGCTAGCAGATTTTAGGCGT+TGG | + | tig0014103:93456-93475 | Msa1353880:intron | 45.0% |
| GTTAATGTCTCGGATGGGAA+TGG | - | tig0014103:93628-93647 | None:intergenic | 45.0% | |
| ! | TGCTAGATGGAATGAGTTGG+AGG | + | tig0014103:93783-93802 | Msa1353880:CDS | 45.0% |
| ! | CACAAATAGGTTGCATCGAC+TGG | + | tig0014103:94129-94148 | Msa1353880:CDS | 45.0% |
| GCCACATCACCATTCATGAA+TGG | + | tig0014103:94164-94183 | Msa1353880:CDS | 45.0% | |
| ! | GCCATTCATGAATGGTGATG+TGG | - | tig0014103:94168-94187 | None:intergenic | 45.0% |
| AATCTGGGAAGCTGTAAGGT+AGG | - | tig0014103:94190-94209 | None:intergenic | 45.0% | |
| TGTGAATCTGGGAAGCTGTA+AGG | - | tig0014103:94194-94213 | None:intergenic | 45.0% | |
| CACCGTCTGATTGTGAATCT+GGG | - | tig0014103:94205-94224 | None:intergenic | 45.0% | |
| ACCTCATTGATGGAGCTTCA+AGG | + | tig0014103:94235-94254 | Msa1353880:exon | 45.0% | |
| ACCTTGAAGCTCCATCAATG+AGG | - | tig0014103:94239-94258 | None:intergenic | 45.0% | |
| TGGGCTCTCACTTTAATCTC+TGG | + | tig0014103:94389-94408 | Msa1353880:three_prime_UTR | 45.0% | |
| !!! | CTCTCGCTCGACTTTTTCAA+TGG | - | tig0014103:94471-94490 | None:intergenic | 45.0% |
| AATGCAAACCTGCCTTCACT+AGG | + | tig0014103:94650-94669 | Msa1353880:three_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTATAAAGAAA+AGG | + | tig0014103:91786-91805 | Msa1353880:intron | 5.0% |
| !!! | TTTTTGTTTAATTTATTTTA+CGG | + | tig0014103:92800-92819 | Msa1353880:intron | 5.0% |
| CAGTGAGTAGCTATAGGTGG+AGG | - | tig0014103:91240-91259 | None:intergenic | 50.0% | |
| TTCTCATGTGGCAGGGTGAT+AGG | + | tig0014103:91569-91588 | Msa1353880:intron | 50.0% | |
| GGGAAAAGGCCATTGCTTAC+AGG | + | tig0014103:92187-92206 | Msa1353880:CDS | 50.0% | |
| ! | CGGACACTTTGATTAGTCCC+AGG | - | tig0014103:92325-92344 | None:intergenic | 50.0% |
| CGGTCATGCCTTCACGAATT+CGG | - | tig0014103:92345-92364 | None:intergenic | 50.0% | |
| TGACCCTCTTAGGCTCAGAA+AGG | + | tig0014103:93096-93115 | Msa1353880:CDS | 50.0% | |
| GGATGGTAAATTGAGGACCG+CGG | - | tig0014103:93557-93576 | None:intergenic | 50.0% | |
| TGTCTCGGATGGGAATGGTT+TGG | - | tig0014103:93623-93642 | None:intergenic | 50.0% | |
| CCACCGTCTGATTGTGAATC+TGG | - | tig0014103:94206-94225 | None:intergenic | 50.0% | |
| CCAGATTCACAATCAGACGG+TGG | + | tig0014103:94203-94222 | Msa1353880:CDS | 50.0% | |
| ! | TAGCAACACTGGCCTAGTGA+AGG | - | tig0014103:94665-94684 | None:intergenic | 50.0% |
| TGGCAGGGTGATAGGAGAAG+TGG | + | tig0014103:91577-91596 | Msa1353880:intron | 55.0% | |
| ! | AACACTGGCCTAGTGAAGGC+AGG | - | tig0014103:94661-94680 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014103 | gene | 91176 | 94726 | 91176 | ID=Msa1353880;Name=Msa1353880 |
| tig0014103 | mRNA | 91176 | 94726 | 91176 | ID=Msa1353880-mRNA-1;Parent=Msa1353880;Name=Msa1353880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=144|1|1|1|1|1|7|482|476 |
| tig0014103 | exon | 91176 | 91414 | 91176 | ID=Msa1353880-mRNA-1:exon:8826;Parent=Msa1353880-mRNA-1 |
| tig0014103 | exon | 91583 | 91658 | 91583 | ID=Msa1353880-mRNA-1:exon:8827;Parent=Msa1353880-mRNA-1 |
| tig0014103 | exon | 91839 | 92397 | 91839 | ID=Msa1353880-mRNA-1:exon:8828;Parent=Msa1353880-mRNA-1 |
| tig0014103 | exon | 92957 | 93117 | 92957 | ID=Msa1353880-mRNA-1:exon:8829;Parent=Msa1353880-mRNA-1 |
| tig0014103 | exon | 93465 | 93662 | 93465 | ID=Msa1353880-mRNA-1:exon:8830;Parent=Msa1353880-mRNA-1 |
| tig0014103 | exon | 93751 | 93850 | 93751 | ID=Msa1353880-mRNA-1:exon:8831;Parent=Msa1353880-mRNA-1 |
| tig0014103 | exon | 94003 | 94726 | 94003 | ID=Msa1353880-mRNA-1:exon:8832;Parent=Msa1353880-mRNA-1 |
| tig0014103 | five_prime_UTR | 91176 | 91319 | 91176 | ID=Msa1353880-mRNA-1:five_prime_utr;Parent=Msa1353880-mRNA-1 |
| tig0014103 | CDS | 91320 | 91414 | 91320 | ID=Msa1353880-mRNA-1:cds;Parent=Msa1353880-mRNA-1 |
| tig0014103 | CDS | 91583 | 91658 | 91583 | ID=Msa1353880-mRNA-1:cds;Parent=Msa1353880-mRNA-1 |
| tig0014103 | CDS | 91839 | 92397 | 91839 | ID=Msa1353880-mRNA-1:cds;Parent=Msa1353880-mRNA-1 |
| tig0014103 | CDS | 92957 | 93117 | 92957 | ID=Msa1353880-mRNA-1:cds;Parent=Msa1353880-mRNA-1 |
| tig0014103 | CDS | 93465 | 93662 | 93465 | ID=Msa1353880-mRNA-1:cds;Parent=Msa1353880-mRNA-1 |
| tig0014103 | CDS | 93751 | 93850 | 93751 | ID=Msa1353880-mRNA-1:cds;Parent=Msa1353880-mRNA-1 |
| tig0014103 | CDS | 94003 | 94244 | 94003 | ID=Msa1353880-mRNA-1:cds;Parent=Msa1353880-mRNA-1 |
| tig0014103 | three_prime_UTR | 94245 | 94726 | 94245 | ID=Msa1353880-mRNA-1:three_prime_utr;Parent=Msa1353880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
