AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715330 MtrunA17_Chr5g0420051 95.423 437 20 0 1 437 1 437 0.0 843
Msa0715330 MtrunA17_Chr2g0308321 39.674 368 192 11 1 354 1 352 1.73e-59 203
Msa0715330 MtrunA17_Chr4g0061651 48.889 225 83 8 111 322 56 261 1.87e-51 180
Msa0715330 MtrunA17_Chr3g0122411 36.364 275 128 9 121 351 108 379 2.52e-37 141
Msa0715330 MtrunA17_Chr3g0132091 46.104 154 78 2 131 279 18 171 6.75e-37 138
Msa0715330 MtrunA17_Chr8g0386271 47.712 153 75 3 131 279 45 196 4.05e-36 137
Msa0715330 MtrunA17_Chr4g0046991 60.638 94 34 1 166 259 61 151 8.77e-35 126
Msa0715330 MtrunA17_Chr7g0231911 71.795 78 22 0 181 258 149 226 6.47e-34 129
Msa0715330 MtrunA17_Chr2g0282521 65.476 84 29 0 176 259 59 142 4.88e-33 121
Msa0715330 MtrunA17_Chr7g0258471 70.130 77 23 0 179 255 140 216 5.08e-33 129
Msa0715330 MtrunA17_Chr2g0302791 62.766 94 34 1 166 258 123 216 1.38e-32 131
Msa0715330 MtrunA17_Chr8g0334671 60.417 96 34 1 165 256 167 262 2.01e-32 125
Msa0715330 MtrunA17_Chr7g0224821 56.000 100 44 0 180 279 76 175 2.33e-32 126
Msa0715330 MtrunA17_Chr1g0194121 61.798 89 34 0 166 254 132 220 3.58e-31 127
Msa0715330 MtrunA17_Chr1g0162871 63.441 93 33 1 167 258 89 181 6.07e-31 126
Msa0715330 MtrunA17_Chr8g0360361 67.105 76 25 0 179 254 63 138 9.60e-31 116
Msa0715330 MtrunA17_Chr7g0270541 67.949 78 25 0 181 258 145 222 1.98e-30 124
Msa0715330 MtrunA17_Chr8g0377421 42.063 126 72 1 130 254 80 205 6.29e-28 112
Msa0715330 MtrunA17_Chr8g0377401 59.211 76 31 0 178 253 159 234 3.27e-26 106
Msa0715330 MtrunA17_Chr2g0286661 51.282 78 38 0 181 258 103 180 5.55e-22 99.0
Msa0715330 MtrunA17_Chr2g0317041 64.000 50 18 0 178 227 96 145 1.00e-16 77.4
Msa0715330 MtrunA17_Chr1g0175031 65.306 49 17 0 179 227 72 120 4.56e-16 74.7
Msa0715330 MtrunA17_Chr8g0377431 34.375 128 78 2 107 234 83 204 1.00e-14 72.8
Msa0715330 MtrunA17_Chr1g0175021 61.224 49 18 1 228 275 8 56 4.10e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715330 AT1G69170.1 34.924 461 187 16 1 421 1 388 2.57e-62 207
Msa0715330 AT1G27370.6 50.400 125 61 1 133 256 127 251 9.62e-35 132
Msa0715330 AT2G42200.1 74.359 78 20 0 179 256 72 149 1.30e-34 132
Msa0715330 AT5G50570.1 57.426 101 42 1 179 279 99 198 1.52e-34 132
Msa0715330 AT5G50570.2 57.426 101 42 1 179 279 99 198 1.52e-34 132
Msa0715330 AT5G50670.1 57.426 101 42 1 179 279 99 198 1.52e-34 132
Msa0715330 AT5G50670.2 57.426 101 42 1 179 279 99 198 1.52e-34 132
Msa0715330 AT1G27370.1 50.400 125 61 1 133 256 127 251 3.67e-34 132
Msa0715330 AT1G27370.5 50.400 125 61 1 133 256 127 251 3.67e-34 132
Msa0715330 AT1G27370.3 50.400 125 61 1 133 256 127 251 3.67e-34 132
Msa0715330 AT1G27370.2 50.400 125 61 1 133 256 127 251 3.67e-34 132
Msa0715330 AT1G27370.4 50.400 125 61 1 133 256 127 251 3.67e-34 132
Msa0715330 AT1G27370.7 50.400 125 61 1 133 256 127 251 3.67e-34 132
Msa0715330 AT1G76580.3 60.000 105 41 1 179 283 112 215 2.20e-33 133
Msa0715330 AT1G76580.2 60.000 105 41 1 179 283 112 215 2.22e-33 133
Msa0715330 AT1G27360.2 38.636 176 101 2 133 308 127 295 5.14e-33 129
Msa0715330 AT1G27360.1 38.636 176 101 2 133 308 127 295 5.14e-33 129
Msa0715330 AT1G27360.3 38.636 176 101 2 133 308 127 295 5.14e-33 129
Msa0715330 AT1G27360.4 38.636 176 101 2 133 308 127 295 5.14e-33 129
Msa0715330 AT1G76580.1 60.000 105 41 1 179 283 112 215 6.24e-33 132
Msa0715330 AT1G20980.1 46.043 139 53 2 167 305 106 222 1.21e-32 131
Msa0715330 AT2G33810.1 65.823 79 27 0 180 258 53 131 1.60e-32 120
Msa0715330 AT3G57920.1 63.265 98 34 1 181 276 59 156 1.65e-32 126
Msa0715330 AT5G43270.3 68.831 77 24 0 179 255 167 243 2.44e-32 127
Msa0715330 AT5G43270.1 68.831 77 24 0 179 255 167 243 2.44e-32 127
Msa0715330 AT5G43270.2 68.831 77 24 0 179 255 167 243 2.44e-32 127
Msa0715330 AT3G60030.1 37.900 219 126 4 160 378 106 314 2.96e-32 130
Msa0715330 AT1G02065.1 51.304 115 52 1 144 254 147 261 3.11e-31 122
Msa0715330 AT2G47070.1 72.000 75 21 0 180 254 105 179 5.79e-31 126
Msa0715330 AT1G53160.2 65.333 75 26 0 180 254 53 127 1.33e-29 114
Msa0715330 AT1G53160.1 65.333 75 26 0 180 254 53 127 1.33e-29 114
Msa0715330 AT1G53160.3 65.333 75 26 0 180 254 53 127 1.54e-29 113
Msa0715330 AT3G15270.1 64.000 75 27 0 180 254 62 136 1.85e-29 113
Msa0715330 AT5G18830.1 36.806 144 73 3 143 268 84 227 1.35e-20 95.1
Msa0715330 AT5G18830.3 36.806 144 73 3 143 268 84 227 1.38e-20 95.1
Msa0715330 AT5G18830.2 36.806 144 73 3 143 268 84 227 1.44e-20 95.1
Msa0715330 AT2G47070.2 74.000 50 13 0 205 254 1 50 2.05e-18 88.6
Msa0715330 AT1G02065.2 45.055 91 42 2 144 228 147 235 4.56e-16 78.2

Find 99 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTCTTATGATATATTT+TGG 0.164398 5_1:+8324486 Msa0715330:three_prime_UTR
GCTCCTGTATGCCAAGTTTA+TGG 0.217464 5_1:+8320803 Msa0715330:CDS
AACAAATAGCTTCTCTCTTC+AGG 0.222642 5_1:-8320293 None:intergenic
TCTAGTTGAGGGCTGCAAAT+TGG 0.232543 5_1:-8324037 None:intergenic
CACTTCTAGCTTACCTGCTT+TGG 0.255243 5_1:+8320781 Msa0715330:CDS
GATTTCCTATGGAGGCTTCT+AGG 0.288922 5_1:+8320465 Msa0715330:CDS
TAGAGAGGTAGTTAAAAGTA+TGG 0.306378 5_1:+8320427 Msa0715330:CDS
TCCATGTGGGATAAACTCTA+AGG 0.320657 5_1:+8324273 Msa0715330:CDS
TTCAATTAAATTTGTAGTAA+TGG 0.320830 5_1:+8320253 Msa0715330:exon
GAAGCAAAGAAATTCTGTTT+TGG 0.338535 5_1:+8324366 Msa0715330:CDS
TGCTGTTTCTCAAATGTGTA+AGG 0.341061 5_1:+8324409 Msa0715330:CDS
CTGATGGATTTCCTGCTGTT+TGG 0.343509 5_1:-8324138 None:intergenic
TTTGCTTCTCCACCCTTTGA+AGG 0.344895 5_1:-8324351 None:intergenic
GACTTGTTAATGGCTCAATA+TGG 0.351865 5_1:+8324531 Msa0715330:three_prime_UTR
CTAGTTGAGGGCTGCAAATT+GGG 0.359645 5_1:-8324036 None:intergenic
TACGTGGATAGACTTGTTAA+TGG 0.360353 5_1:+8324521 Msa0715330:three_prime_UTR
TTAACTTGCCTATACAATAT+CGG 0.363026 5_1:+8324730 Msa0715330:three_prime_UTR
TTCTAGGACTGTTCGTGGTT+CGG 0.369527 5_1:+8320481 Msa0715330:CDS
AAGTATGGAATTTGTGGACT+TGG 0.383614 5_1:+8320442 Msa0715330:CDS
GTTACATTACATGACACATT+AGG 0.385415 5_1:-8324443 None:intergenic
AATTTGTAGTAATGGAATCT+TGG 0.388699 5_1:+8320261 Msa0715330:exon
AATTGTCTTCTAACCTTCAA+AGG 0.400965 5_1:+8324338 Msa0715330:CDS
TCATTGATTGATTTGAAGCT+AGG 0.417700 5_1:+8320656 Msa0715330:CDS
GACGATAACTTTAGCTGTCT+TGG 0.422044 5_1:-8320891 None:intergenic
TTAGTAGATTGTCAAGGTGT+GGG 0.426117 5_1:+8320683 Msa0715330:CDS
TTCTTGAATTAGGTTCCATC+TGG 0.429111 5_1:+8321477 Msa0715330:intron
ATTAAGACAACTCAACCAAT+AGG 0.431369 5_1:-8324695 None:intergenic
GCTAGAAGTGCGGGATCTCT+TGG 0.433355 5_1:-8320768 None:intergenic
ACAGGTGCAATATGGCCTAT+TGG 0.436170 5_1:+8324680 Msa0715330:three_prime_UTR
GCTAACACGCTTTGATGAAT+CGG 0.443304 5_1:-8320746 None:intergenic
TGTGGACTTGGGATTTCCTA+TGG 0.444151 5_1:+8320454 Msa0715330:CDS
TAGAAAACCCTTAGTTGAAT+GGG 0.448095 5_1:+8320358 Msa0715330:CDS
AGTTAAAAGTATGGAATTTG+TGG 0.448427 5_1:+8320436 Msa0715330:CDS
CAACCATAAACTTGGCATAC+AGG 0.455845 5_1:-8320806 None:intergenic
ATTACAAGCCGATATTGTAT+AGG 0.460605 5_1:-8324738 None:intergenic
TCAAAGTGGACATATCAAAC+TGG 0.462398 5_1:+8324006 Msa0715330:CDS
GTAGAAAACCCTTAGTTGAA+TGG 0.471526 5_1:+8320357 Msa0715330:CDS
TGATCTTTGTGCTACAAAGT+TGG 0.473489 5_1:-8324611 None:intergenic
GCTCAATATGGATCAATGAT+AGG 0.473771 5_1:+8324543 Msa0715330:three_prime_UTR
AGTATGGAATTTGTGGACTT+GGG 0.478417 5_1:+8320443 Msa0715330:CDS
TCAAAGGTGTTTCAGAAACT+TGG 0.479177 5_1:-8324210 None:intergenic
ACAAATAGCTTCTCTCTTCA+GGG 0.479898 5_1:-8320292 None:intergenic
TTTATTTATCACATAGGTGA+TGG 0.479919 5_1:+8319985 Msa0715330:five_prime_UTR
AAAAGCAATAACATGGATAG+AGG 0.481057 5_1:-8320558 None:intergenic
TGTAGATTTATTTATCACAT+AGG 0.488463 5_1:+8319979 Msa0715330:five_prime_UTR
ATTGTCTTCTAACCTTCAAA+GGG 0.489133 5_1:+8324339 Msa0715330:CDS
CCATGCTACAACCATAAACT+TGG 0.490263 5_1:-8320814 None:intergenic
TATCTTGAGTGCGGATGTCC+CGG 0.493515 5_1:-8324180 None:intergenic
CCTCGAAAGATTACCACAAA+AGG 0.498780 5_1:+8320846 Msa0715330:CDS
ACAGCTAAAGTTATCGTCAA+TGG 0.504384 5_1:+8320896 Msa0715330:CDS
ACTTTGAAATATGTCTTGAA+AGG 0.507641 5_1:-8323948 None:intergenic
CATTGATTGATTTGAAGCTA+GGG 0.508340 5_1:+8320657 Msa0715330:CDS
AATCAAACTGAGGTTTCCTT+CGG 0.512482 5_1:-8321561 None:intergenic
GAGGCTTCTAGGACTGTTCG+TGG 0.514115 5_1:+8320476 Msa0715330:CDS
CAAAGATCACTAAAATTCAC+TGG 0.515800 5_1:+8324625 Msa0715330:three_prime_UTR
TTCGCAGAGCTTGTCATCAA+AGG 0.516063 5_1:-8324226 None:intergenic
AGCAGGTAAGCTAGAAGTGC+GGG 0.516979 5_1:-8320777 None:intergenic
ATGGTAAGCGCAGTTGTCGC+AGG 0.518129 5_1:+8321515 Msa0715330:CDS
TAGCGGGCACTTCTAGTTGA+GGG 0.519257 5_1:-8324048 None:intergenic
AATTCGTGTCCATGTGTAGC+GGG 0.520740 5_1:-8324064 None:intergenic
TCCTTAGAGTTTATCCCACA+TGG 0.525879 5_1:-8324274 None:intergenic
GACATCCGCACTCAAGATAG+AGG 0.528344 5_1:+8324184 Msa0715330:CDS
TAAATGAGGGATATCAATGT+TGG 0.528962 5_1:+8324570 Msa0715330:three_prime_UTR
AAAGTACTGGCAGTAGCTGA+TGG 0.532169 5_1:-8324154 None:intergenic
TCAGACATCTAGCTGTGAGC+TGG 0.532209 5_1:+8320505 Msa0715330:CDS
AGTTGTCGCAGGCGTCTAGC+TGG 0.532617 5_1:+8321526 Msa0715330:CDS
TAGTAGATTGTCAAGGTGTG+GGG 0.537134 5_1:+8320684 Msa0715330:CDS
AAGATTCTTCAGTCATATCA+AGG 0.537497 5_1:+8321604 Msa0715330:CDS
GCTGTTTCTCAAATGTGTAA+GGG 0.538013 5_1:+8324410 Msa0715330:CDS
TGGACATATCAAACTGGAAG+AGG 0.540218 5_1:+8324012 Msa0715330:CDS
CAATGATAGGTAGATAAATG+AGG 0.541073 5_1:+8324556 Msa0715330:three_prime_UTR
AGTTGTCTTAATATTTGACT+CGG 0.543423 5_1:+8324706 Msa0715330:three_prime_UTR
CTAGAAGTGCCCGCTACACA+TGG 0.550524 5_1:+8324055 Msa0715330:CDS
GTAGCGGGCACTTCTAGTTG+AGG 0.554616 5_1:-8324049 None:intergenic
CCAAGTTTATGGTTGTAGCA+TGG 0.562642 5_1:+8320814 Msa0715330:CDS
AATGATAGGTAGATAAATGA+GGG 0.566190 5_1:+8324557 Msa0715330:three_prime_UTR
ATTAGTAGATTGTCAAGGTG+TGG 0.566271 5_1:+8320682 Msa0715330:CDS
TTTCAAGACATATTTCAAAG+TGG 0.566498 5_1:+8323950 Msa0715330:CDS
AATCTGTCGCACCAAACAGC+AGG 0.571224 5_1:+8324127 Msa0715330:CDS
CTGGACACAATGAGCGCCGA+AGG 0.574137 5_1:+8321545 Msa0715330:CDS
TGGCATACAGGAGCCAAAGC+AGG 0.579602 5_1:-8320794 None:intergenic
CATGATCAAATCTCTCAAAG+TGG 0.581788 5_1:+8323992 Msa0715330:CDS
TCATGTAACTTTGAACGAGA+CGG 0.583364 5_1:+8320392 Msa0715330:CDS
CTGACAGAAGAGAGAGAGCA+TGG 0.588418 5_1:-8324093 None:intergenic
GTCTTCTAACCTTCAAAGGG+TGG 0.588488 5_1:+8324342 Msa0715330:CDS
AGAACTTAAATGCTTTGACT+CGG 0.599300 5_1:-8320606 None:intergenic
CGTCGAACTCAGTTACCAGA+TGG 0.604322 5_1:-8321492 None:intergenic
GGACTTGGGATTTCCTATGG+AGG 0.614398 5_1:+8320457 Msa0715330:CDS
ACAGTCCTAGAAGCCTCCAT+AGG 0.615388 5_1:-8320470 None:intergenic
ATGAATCAAAAGCAATAACA+TGG 0.620760 5_1:-8320565 None:intergenic
CTAGTCATGTAATCAAACTG+AGG 0.623999 5_1:-8321571 None:intergenic
TCGTCAATGGTGTTGAACAG+AGG 0.637850 5_1:+8320909 Msa0715330:CDS
GAAATTATTAAATCTGAACA+TGG 0.656589 5_1:+8324295 Msa0715330:CDS
GGTCGCCTCTATCTTGAGTG+CGG 0.658611 5_1:-8324189 None:intergenic
TAATTCGTGTCCATGTGTAG+CGG 0.666143 5_1:-8324065 None:intergenic
GGGAGATTAGTAGATTGTCA+AGG 0.666785 5_1:+8320677 Msa0715330:CDS
CTGGTAACTGAGTTCGACGA+TGG 0.666961 5_1:+8321496 Msa0715330:CDS
AAGCAGGTAAGCTAGAAGTG+CGG 0.678203 5_1:-8320778 None:intergenic
CAATTGAAACAGATCAACAG+TGG 0.725111 5_1:-8324320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAAATGATTTAAATAA+TGG - chr5_1:8323070-8323089 None:intergenic 10.0%
!!! TTTTAACTTTTTAAAAAAAC+AGG + chr5_1:8324662-8324681 Msa0715330:three_prime_UTR 10.0%
!!! TATTTCTTTTCAATTATGTT+AGG + chr5_1:8320201-8320220 Msa0715330:five_prime_UTR 15.0%
!! TTCAATTAAATTTGTAGTAA+TGG + chr5_1:8320253-8320272 Msa0715330:exon 15.0%
!!! AAATGTAATTTTAATTCCTA+AGG - chr5_1:8320970-8320989 None:intergenic 15.0%
!! TAATATCTTAGAATTGTTAA+TGG + chr5_1:8321380-8321399 Msa0715330:intron 15.0%
!!! GGGTTATAAATTTTATATAA+TGG - chr5_1:8321979-8321998 None:intergenic 15.0%
!!! TTTCAGTTTTTAATAAGATT+TGG + chr5_1:8322112-8322131 Msa0715330:intron 15.0%
!! TAATAGAAAAATATACCATA+TGG - chr5_1:8322452-8322471 None:intergenic 15.0%
!!! TATATTTTTCTATTAGCTTA+TGG + chr5_1:8322457-8322476 Msa0715330:intron 15.0%
!! TATTTCATACAAATTTAGTT+AGG - chr5_1:8322643-8322662 None:intergenic 15.0%
!! TCAATTACTATAAGAAATTT+GGG + chr5_1:8322727-8322746 Msa0715330:intron 15.0%
!! ATAAATGATTTAAATAATGG+TGG - chr5_1:8323067-8323086 None:intergenic 15.0%
!! AGAAATAATAAGATTATAAC+AGG - chr5_1:8323833-8323852 None:intergenic 15.0%
!!! TGTATTCTTATGATATATTT+TGG + chr5_1:8324486-8324505 Msa0715330:three_prime_UTR 15.0%
!!! AAATCTCAACTTTTTCAAAA+GGG - chr5_1:8319926-8319945 None:intergenic 20.0%
!!! AAAATCTCAACTTTTTCAAA+AGG - chr5_1:8319927-8319946 None:intergenic 20.0%
!! TGTAGATTTATTTATCACAT+AGG + chr5_1:8319979-8319998 Msa0715330:five_prime_UTR 20.0%
!!! GAACTTGTTTTATTTTGATA+TGG + chr5_1:8320007-8320026 Msa0715330:five_prime_UTR 20.0%
!!! TAAACTTTTGATTATAGCTA+AGG + chr5_1:8320168-8320187 Msa0715330:five_prime_UTR 20.0%
!!! CGTATTATTTTACTTTCTTA+TGG + chr5_1:8321165-8321184 Msa0715330:intron 20.0%
!!! CTTATTTTTGTTCTTGAATT+AGG + chr5_1:8321467-8321486 Msa0715330:intron 20.0%
!!! GAAATATAATTCTAGTTGTT+AGG - chr5_1:8321808-8321827 None:intergenic 20.0%
!! TATAAAATTTATAACCCAAG+TGG + chr5_1:8321910-8321929 Msa0715330:intron 20.0%
!! ATAAAATTTATAACCCAAGT+GGG + chr5_1:8321911-8321930 Msa0715330:intron 20.0%
!!! TTTTATATAATGGATTTCGA+AGG - chr5_1:8321969-8321988 None:intergenic 20.0%
!! TATAAAATTTATAACCCAAG+TGG + chr5_1:8321910-8321929 Msa0715330:intron 20.0%
!! ATAAAATTTATAACCCAAGT+GGG + chr5_1:8321911-8321930 Msa0715330:intron 20.0%
!!! TTTTATCAAAGTCAATATGA+AGG - chr5_1:8322071-8322090 None:intergenic 20.0%
!!! AACTCTATTATATTTTGAAG+TGG - chr5_1:8322177-8322196 None:intergenic 20.0%
!!! TCTGATTTTTAAATTACATG+TGG - chr5_1:8322255-8322274 None:intergenic 20.0%
!! CATGTAATTTAAAAATCAGA+AGG + chr5_1:8322255-8322274 Msa0715330:intron 20.0%
!! CATATTGATAGAAAATTGAT+AGG + chr5_1:8322353-8322372 Msa0715330:intron 20.0%
!! ATCTTATAATTTAGACTTAG+AGG - chr5_1:8322565-8322584 None:intergenic 20.0%
!! TTGTATGAAATATCAATCAT+TGG + chr5_1:8322651-8322670 Msa0715330:intron 20.0%
!! GTCAATTACTATAAGAAATT+TGG + chr5_1:8322726-8322745 Msa0715330:intron 20.0%
!! TTAAACATTTCAAACAAAAG+AGG + chr5_1:8322847-8322866 Msa0715330:intron 20.0%
!!! AAACAATTACACTTGTTAAA+TGG - chr5_1:8322945-8322964 None:intergenic 20.0%
!! TTTCATCGAGTTTATTTATT+AGG - chr5_1:8323176-8323195 None:intergenic 20.0%
!! AAACTAATTTACATCTACAT+AGG - chr5_1:8323360-8323379 None:intergenic 20.0%
!! TTAAAATGCAGTTATAAAGT+GGG - chr5_1:8323428-8323447 None:intergenic 20.0%
!!! TTTAAAATGCAGTTATAAAG+TGG - chr5_1:8323429-8323448 None:intergenic 20.0%
!!! TATAACTGCATTTTAAAACT+AGG + chr5_1:8323432-8323451 Msa0715330:intron 20.0%
!!! CTTAATTTGAAGTTTTAAAC+TGG + chr5_1:8323480-8323499 Msa0715330:intron 20.0%
!!! TTCCAATTTTTTCATTGTTT+TGG - chr5_1:8323582-8323601 None:intergenic 20.0%
!!! AATTTTGCAGTTATTTTCAA+TGG - chr5_1:8323695-8323714 None:intergenic 20.0%
!!! GCAAAATTATGAATTTTCAT+TGG + chr5_1:8323707-8323726 Msa0715330:intron 20.0%
!!! ATTTTCATTGGATAAGTTAA+AGG + chr5_1:8323719-8323738 Msa0715330:intron 20.0%
!! GAAATTATTAAATCTGAACA+TGG + chr5_1:8324295-8324314 Msa0715330:CDS 20.0%
!!! ATTCTTATGATATATTTTGG+TGG + chr5_1:8324489-8324508 Msa0715330:three_prime_UTR 20.0%
!!! TTCTTATGATATATTTTGGT+GGG + chr5_1:8324490-8324509 Msa0715330:three_prime_UTR 20.0%
! TTTATTTATCACATAGGTGA+TGG + chr5_1:8319985-8320004 Msa0715330:five_prime_UTR 25.0%
!! AATTTGTAGTAATGGAATCT+TGG + chr5_1:8320261-8320280 Msa0715330:exon 25.0%
!!! CTATTTGTTTTCTGATGAAA+TGG + chr5_1:8320307-8320326 Msa0715330:CDS 25.0%
!! AGTTAAAAGTATGGAATTTG+TGG + chr5_1:8320436-8320455 Msa0715330:CDS 25.0%
! ATGAATCAAAAGCAATAACA+TGG - chr5_1:8320568-8320587 None:intergenic 25.0%
!! TATCAAAGAAGTACAAGAAT+GGG - chr5_1:8321068-8321087 None:intergenic 25.0%
!! ATATCAAAGAAGTACAAGAA+TGG - chr5_1:8321069-8321088 None:intergenic 25.0%
!!! AATAATACGAGAAGTATTGA+TGG - chr5_1:8321154-8321173 None:intergenic 25.0%
!! TACTTTCTTATGGTTTTCTT+AGG + chr5_1:8321175-8321194 Msa0715330:intron 25.0%
!! ACTTTCTTATGGTTTTCTTA+GGG + chr5_1:8321176-8321195 Msa0715330:intron 25.0%
! GAATTGTCAAATAAACTAGA+CGG - chr5_1:8321245-8321264 None:intergenic 25.0%
! TCATAGTCTAAATTCTAACA+TGG + chr5_1:8321357-8321376 Msa0715330:intron 25.0%
! ATAGATAAGACAGCAAAAAT+TGG + chr5_1:8321662-8321681 Msa0715330:intron 25.0%
! TTATGTCTGATAATTAGTTG+CGG + chr5_1:8321714-8321733 Msa0715330:intron 25.0%
!!! ACTTTTATAATGGATTTCGA+AGG - chr5_1:8322041-8322060 None:intergenic 25.0%
! TTGACTTTGATAAAAATCTG+TGG + chr5_1:8322076-8322095 Msa0715330:intron 25.0%
!!! ATAGAGTTGATAGATAGATT+AGG + chr5_1:8322189-8322208 Msa0715330:intron 25.0%
!! GATTTTTAAATTACATGTGG+TGG - chr5_1:8322252-8322271 None:intergenic 25.0%
! GTTTCTTAACCATATTAGTT+AGG + chr5_1:8322293-8322312 Msa0715330:intron 25.0%
! ACACAAAATCCTAACTAATA+TGG - chr5_1:8322305-8322324 None:intergenic 25.0%
!!! AAGGTTTTAATTTCAGTTCA+TGG - chr5_1:8322799-8322818 None:intergenic 25.0%
! ATGAACTGAAATTAAAACCT+TGG + chr5_1:8322798-8322817 Msa0715330:intron 25.0%
!!! ACTCCATCTTTTAATTTTTG+TGG + chr5_1:8322900-8322919 Msa0715330:intron 25.0%
!!! AAAAACTAGTCTTACAACAT+TGG - chr5_1:8323012-8323031 None:intergenic 25.0%
! CAATTCATGATTTCAATAGA+AGG + chr5_1:8323088-8323107 Msa0715330:intron 25.0%
! AAATTAAGTTAAAGAATCCC+TGG - chr5_1:8323468-8323487 None:intergenic 25.0%
!! CTTTTTAAACGTCAAAATTG+TGG + chr5_1:8323537-8323556 Msa0715330:intron 25.0%
! GTCCAAAACAATGAAAAAAT+TGG + chr5_1:8323577-8323596 Msa0715330:intron 25.0%
!! TTACATTTTTACTGTTACTC+TGG + chr5_1:8323616-8323635 Msa0715330:intron 25.0%
!!! ACTTTGAAATATGTCTTGAA+AGG - chr5_1:8323951-8323970 None:intergenic 25.0%
! TTTCAAGACATATTTCAAAG+TGG + chr5_1:8323950-8323969 Msa0715330:CDS 25.0%
!!! AAATTCTGTTTTGGTAAAGT+GGG + chr5_1:8324375-8324394 Msa0715330:CDS 25.0%
! AATGATAGGTAGATAAATGA+GGG + chr5_1:8324557-8324576 Msa0715330:three_prime_UTR 25.0%
! TTAAAAAAACAGGTGCAATA+TGG + chr5_1:8324672-8324691 Msa0715330:three_prime_UTR 25.0%
! AGTTGTCTTAATATTTGACT+CGG + chr5_1:8324706-8324725 Msa0715330:three_prime_UTR 25.0%
!!! TTAACTTGCCTATACAATAT+CGG + chr5_1:8324730-8324749 Msa0715330:three_prime_UTR 25.0%
TAGAAAACCCTTAGTTGAAT+GGG + chr5_1:8320358-8320377 Msa0715330:CDS 30.0%
! TTGTTTTCCCATTCAACTAA+GGG - chr5_1:8320368-8320387 None:intergenic 30.0%
!! TTTGTTTTCCCATTCAACTA+AGG - chr5_1:8320369-8320388 None:intergenic 30.0%
TAGAGAGGTAGTTAAAAGTA+TGG + chr5_1:8320427-8320446 Msa0715330:CDS 30.0%
AAAAGCAATAACATGGATAG+AGG - chr5_1:8320561-8320580 None:intergenic 30.0%
!! TGCTTTTGATTCATCTTTTG+CGG + chr5_1:8320574-8320593 Msa0715330:CDS 30.0%
AGAACTTAAATGCTTTGACT+CGG - chr5_1:8320609-8320628 None:intergenic 30.0%
!! TCATTGATTGATTTGAAGCT+AGG + chr5_1:8320656-8320675 Msa0715330:CDS 30.0%
!! CATTGATTGATTTGAAGCTA+GGG + chr5_1:8320657-8320676 Msa0715330:CDS 30.0%
!!! GGTATATTTTTTGGTTCCTT+AGG + chr5_1:8320951-8320970 Msa0715330:intron 30.0%
ATACTTCTCTTACAATCAGA+TGG + chr5_1:8320992-8321011 Msa0715330:intron 30.0%
! ATCAAAGAAGTACAAGAATG+GGG - chr5_1:8321067-8321086 None:intergenic 30.0%
!! TGAGAAAACTCTTACTTTTC+TGG - chr5_1:8321120-8321139 None:intergenic 30.0%
CTCTGATCAATTAGTGTATA+TGG + chr5_1:8321271-8321290 Msa0715330:intron 30.0%
TAGACTATGAATGACTACTT+TGG - chr5_1:8321347-8321366 None:intergenic 30.0%
AAGATTCTTCAGTCATATCA+AGG + chr5_1:8321604-8321623 Msa0715330:CDS 30.0%
AATTCTCAAAAGAACAGATG+AGG - chr5_1:8321695-8321714 None:intergenic 30.0%
ACGGAAATATCATTTGTTCA+TGG - chr5_1:8321766-8321785 None:intergenic 30.0%
TAACTCTATTGAACTCTTCA+CGG - chr5_1:8321785-8321804 None:intergenic 30.0%
ATATTTCCAAATTGCCATCA+TGG + chr5_1:8321821-8321840 Msa0715330:intron 30.0%
CAAATATCTTATTCCTAGCA+TGG - chr5_1:8321881-8321900 None:intergenic 30.0%
! AGGATGCTACACTTTTATAA+TGG - chr5_1:8322051-8322070 None:intergenic 30.0%
TAAATTACATGTGGTGGTTA+AGG - chr5_1:8322246-8322265 None:intergenic 30.0%
AATCAGAAGGTTTCTATTTC+AGG + chr5_1:8322268-8322287 Msa0715330:intron 30.0%
! TTAGGATTTTGTGTGAAAGT+AGG + chr5_1:8322311-8322330 Msa0715330:intron 30.0%
! TAGGATTTTGTGTGAAAGTA+GGG + chr5_1:8322312-8322331 Msa0715330:intron 30.0%
!!! AGTTTTTTGACTTTGTGATG+TGG + chr5_1:8322424-8322443 Msa0715330:intron 30.0%
! TCTATTAGCTTATGGTATAC+AGG + chr5_1:8322465-8322484 Msa0715330:intron 30.0%
ATAGCTTAAATCTCTCAAGT+TGG + chr5_1:8322492-8322511 Msa0715330:intron 30.0%
! GAAATTTGGGTTAAGTAATG+CGG + chr5_1:8322740-8322759 Msa0715330:intron 30.0%
!!! TTTTAATTTCAGTTCATGGC+AGG - chr5_1:8322795-8322814 None:intergenic 30.0%
GGACCACAAAAATTAAAAGA+TGG - chr5_1:8322906-8322925 None:intergenic 30.0%
!!! TTTTAATTTTTGTGGTCCCA+GGG + chr5_1:8322908-8322927 Msa0715330:intron 30.0%
TTGTGCATAAAAAACTCTGA+TGG - chr5_1:8322972-8322991 None:intergenic 30.0%
TTGTCTTTCTGTTTGATGTT+TGG + chr5_1:8323300-8323319 Msa0715330:intron 30.0%
! GTTAAACTTTTATAGCAGAC+AGG - chr5_1:8323330-8323349 None:intergenic 30.0%
TCTGCTATAAAAGTTTAACG+AGG + chr5_1:8323331-8323350 Msa0715330:intron 30.0%
! TCTAAAATAAATCTTCCCGA+TGG + chr5_1:8323850-8323869 Msa0715330:intron 30.0%
CTAAAATAAATCTTCCCGAT+GGG + chr5_1:8323851-8323870 Msa0715330:intron 30.0%
! TAGATTCTTTGCTATATGTG+TGG - chr5_1:8323886-8323905 None:intergenic 30.0%
TTCTCTTACACTAAATGTGT+AGG + chr5_1:8323911-8323930 Msa0715330:intron 30.0%
! AGATTTGATCATGCTTTTCT+GGG - chr5_1:8323985-8324004 None:intergenic 30.0%
AATTGTCTTCTAACCTTCAA+AGG + chr5_1:8324338-8324357 Msa0715330:CDS 30.0%
ATTGTCTTCTAACCTTCAAA+GGG + chr5_1:8324339-8324358 Msa0715330:CDS 30.0%
! GAAGCAAAGAAATTCTGTTT+TGG + chr5_1:8324366-8324385 Msa0715330:CDS 30.0%
!!! GAAATTCTGTTTTGGTAAAG+TGG + chr5_1:8324374-8324393 Msa0715330:CDS 30.0%
GTTACATTACATGACACATT+AGG - chr5_1:8324446-8324465 None:intergenic 30.0%
CAATGATAGGTAGATAAATG+AGG + chr5_1:8324556-8324575 Msa0715330:three_prime_UTR 30.0%
TAAATGAGGGATATCAATGT+TGG + chr5_1:8324570-8324589 Msa0715330:three_prime_UTR 30.0%
CAAAGATCACTAAAATTCAC+TGG + chr5_1:8324625-8324644 Msa0715330:three_prime_UTR 30.0%
ATTAAGACAACTCAACCAAT+AGG - chr5_1:8324698-8324717 None:intergenic 30.0%
ATTACAAGCCGATATTGTAT+AGG - chr5_1:8324741-8324760 None:intergenic 30.0%
ACAAATAGCTTCTCTCTTCA+GGG - chr5_1:8320295-8320314 None:intergenic 35.0%
AACAAATAGCTTCTCTCTTC+AGG - chr5_1:8320296-8320315 None:intergenic 35.0%
GTAGAAAACCCTTAGTTGAA+TGG + chr5_1:8320357-8320376 Msa0715330:CDS 35.0%
TCATGTAACTTTGAACGAGA+CGG + chr5_1:8320392-8320411 Msa0715330:CDS 35.0%
!!! CGGTTTTAATTCAGATAGAG+AGG + chr5_1:8320412-8320431 Msa0715330:CDS 35.0%
AAGTATGGAATTTGTGGACT+TGG + chr5_1:8320442-8320461 Msa0715330:CDS 35.0%
AGTATGGAATTTGTGGACTT+GGG + chr5_1:8320443-8320462 Msa0715330:CDS 35.0%
ATTAGTAGATTGTCAAGGTG+TGG + chr5_1:8320682-8320701 Msa0715330:CDS 35.0%
TTAGTAGATTGTCAAGGTGT+GGG + chr5_1:8320683-8320702 Msa0715330:CDS 35.0%
! CACAAACTTTATGCCTTTTG+TGG - chr5_1:8320862-8320881 None:intergenic 35.0%
ACAGCTAAAGTTATCGTCAA+TGG + chr5_1:8320896-8320915 Msa0715330:CDS 35.0%
!!! AGTGCAGCAGGTATATTTTT+TGG + chr5_1:8320942-8320961 Msa0715330:intron 35.0%
CAAATAAACTAGACGGCATT+TGG - chr5_1:8321238-8321257 None:intergenic 35.0%
TTCTTGAATTAGGTTCCATC+TGG + chr5_1:8321477-8321496 Msa0715330:intron 35.0%
AATCAAACTGAGGTTTCCTT+CGG - chr5_1:8321564-8321583 None:intergenic 35.0%
CTAGTCATGTAATCAAACTG+AGG - chr5_1:8321574-8321593 None:intergenic 35.0%
TAAACACCATGATGGCAATT+TGG - chr5_1:8321830-8321849 None:intergenic 35.0%
AATCCTCATAAACACCATGA+TGG - chr5_1:8321838-8321857 None:intergenic 35.0%
CATGGTGTTTATGAGGATTT+AGG + chr5_1:8321839-8321858 Msa0715330:intron 35.0%
! TAGGTCATATTTTCCCACTT+GGG - chr5_1:8321927-8321946 None:intergenic 35.0%
! TTAGGTCATATTTTCCCACT+TGG - chr5_1:8321928-8321947 None:intergenic 35.0%
!!! TTTTTTCTGTCACTACGGTT+AGG - chr5_1:8321946-8321965 None:intergenic 35.0%
!!! GAAGGTTTTTTCTGTCACTA+CGG - chr5_1:8321951-8321970 None:intergenic 35.0%
! TAGGTCATATTTTCCCACTT+GGG - chr5_1:8321927-8321946 None:intergenic 35.0%
! TTAGGTCATATTTTCCCACT+TGG - chr5_1:8321928-8321947 None:intergenic 35.0%
!!! TTTTTTCTGTCACTACGGTT+AGG - chr5_1:8321946-8321965 None:intergenic 35.0%
!!! GAAGGTTTTTTCTGTCACTA+CGG - chr5_1:8321951-8321970 None:intergenic 35.0%
TGATTAATACTCTTCCCTTG+AGG - chr5_1:8322519-8322538 None:intergenic 35.0%
!!! CTTTTAATTTTTGTGGTCCC+AGG + chr5_1:8322907-8322926 Msa0715330:intron 35.0%
GTACACACACTTTACTCTTA+CGG - chr5_1:8323216-8323235 None:intergenic 35.0%
GAGTAAAGTGTGTGTACTTA+AGG + chr5_1:8323219-8323238 Msa0715330:intron 35.0%
GCAATGTAATGAGCTTTCAT+TGG - chr5_1:8323397-8323416 None:intergenic 35.0%
! AGTTATAAAGTGGGCTTATG+TGG - chr5_1:8323419-8323438 None:intergenic 35.0%
! GAGATTTGATCATGCTTTTC+TGG - chr5_1:8323986-8324005 None:intergenic 35.0%
CATGATCAAATCTCTCAAAG+TGG + chr5_1:8323992-8324011 Msa0715330:CDS 35.0%
TCAAAGTGGACATATCAAAC+TGG + chr5_1:8324006-8324025 Msa0715330:CDS 35.0%
!! TCAAAGGTGTTTCAGAAACT+TGG - chr5_1:8324213-8324232 None:intergenic 35.0%
! GAAATGAGTCTTTTCCATGT+GGG + chr5_1:8324260-8324279 Msa0715330:CDS 35.0%
CAATTGAAACAGATCAACAG+TGG - chr5_1:8324323-8324342 None:intergenic 35.0%
!! TGCTGTTTCTCAAATGTGTA+AGG + chr5_1:8324409-8324428 Msa0715330:CDS 35.0%
!! GCTGTTTCTCAAATGTGTAA+GGG + chr5_1:8324410-8324429 Msa0715330:CDS 35.0%
!! TACGTGGATAGACTTGTTAA+TGG + chr5_1:8324521-8324540 Msa0715330:three_prime_UTR 35.0%
!! GACTTGTTAATGGCTCAATA+TGG + chr5_1:8324531-8324550 Msa0715330:three_prime_UTR 35.0%
GCTCAATATGGATCAATGAT+AGG + chr5_1:8324543-8324562 Msa0715330:three_prime_UTR 35.0%
TGATCTTTGTGCTACAAAGT+TGG - chr5_1:8324614-8324633 None:intergenic 35.0%
GGGAGATTAGTAGATTGTCA+AGG + chr5_1:8320677-8320696 Msa0715330:CDS 40.0%
TAGTAGATTGTCAAGGTGTG+GGG + chr5_1:8320684-8320703 Msa0715330:CDS 40.0%
GCTAACACGCTTTGATGAAT+CGG - chr5_1:8320749-8320768 None:intergenic 40.0%
CAACCATAAACTTGGCATAC+AGG - chr5_1:8320809-8320828 None:intergenic 40.0%
CCATGCTACAACCATAAACT+TGG - chr5_1:8320817-8320836 None:intergenic 40.0%
CCAAGTTTATGGTTGTAGCA+TGG + chr5_1:8320814-8320833 Msa0715330:CDS 40.0%
! CCTTTTGTGGTAATCTTTCG+AGG - chr5_1:8320849-8320868 None:intergenic 40.0%
CCTCGAAAGATTACCACAAA+AGG + chr5_1:8320846-8320865 Msa0715330:CDS 40.0%
GACGATAACTTTAGCTGTCT+TGG - chr5_1:8320894-8320913 None:intergenic 40.0%
CAAGACTGGACATTTACAAG+TGG - chr5_1:8321407-8321426 None:intergenic 40.0%
TTGCCATCATGGTGTTTATG+AGG + chr5_1:8321832-8321851 Msa0715330:intron 40.0%
GTTTATGAGGATTTAGGTCC+TGG + chr5_1:8321845-8321864 Msa0715330:intron 40.0%
TAGCATGGAAAAGATAGACC+AGG - chr5_1:8321866-8321885 None:intergenic 40.0%
! TGGTCTATCTTTTCCATGCT+AGG + chr5_1:8321865-8321884 Msa0715330:intron 40.0%
ATGTGGTGGTTAAGGATTAG+AGG - chr5_1:8322238-8322257 None:intergenic 40.0%
CAGAAGGTTTCTATTTCAGG+AGG + chr5_1:8322271-8322290 Msa0715330:intron 40.0%
TGCTCTCTTTCTAGATTCCA+AGG - chr5_1:8322818-8322837 None:intergenic 40.0%
!!! AGACTAGTTTTTCGCTATCG+TGG + chr5_1:8323020-8323039 Msa0715330:intron 40.0%
! TAGTTTTTCGCTATCGTGGT+AGG + chr5_1:8323024-8323043 Msa0715330:intron 40.0%
CAATAGAAGGTCACTGTTGT+TGG + chr5_1:8323101-8323120 Msa0715330:intron 40.0%
! TGTGTGTACTTAAGGCACTA+GGG + chr5_1:8323227-8323246 Msa0715330:intron 40.0%
AAGTTAAAGAATCCCTGGTG+TGG - chr5_1:8323463-8323482 None:intergenic 40.0%
!! GATCATGCTTTTCTGGGAAA+AGG - chr5_1:8323979-8323998 None:intergenic 40.0%
TGGACATATCAAACTGGAAG+AGG + chr5_1:8324012-8324031 Msa0715330:CDS 40.0%
TAATTCGTGTCCATGTGTAG+CGG - chr5_1:8324068-8324087 None:intergenic 40.0%
!!! CTACTGCCAGTACTTTTTTC+CGG + chr5_1:8324161-8324180 Msa0715330:CDS 40.0%
!!! TACTGCCAGTACTTTTTTCC+GGG + chr5_1:8324162-8324181 Msa0715330:CDS 40.0%
! CGAAATGAGTCTTTTCCATG+TGG + chr5_1:8324259-8324278 Msa0715330:CDS 40.0%
TCCATGTGGGATAAACTCTA+AGG + chr5_1:8324273-8324292 Msa0715330:CDS 40.0%
TCCTTAGAGTTTATCCCACA+TGG - chr5_1:8324277-8324296 None:intergenic 40.0%
! TTGGTGGGATTTTTCTTACG+TGG + chr5_1:8324505-8324524 Msa0715330:three_prime_UTR 40.0%
TGTGGACTTGGGATTTCCTA+TGG + chr5_1:8320454-8320473 Msa0715330:CDS 45.0%
GATTTCCTATGGAGGCTTCT+AGG + chr5_1:8320465-8320484 Msa0715330:CDS 45.0%
!! TTCTAGGACTGTTCGTGGTT+CGG + chr5_1:8320481-8320500 Msa0715330:CDS 45.0%
AAGCAGGTAAGCTAGAAGTG+CGG - chr5_1:8320781-8320800 None:intergenic 45.0%
!! CACTTCTAGCTTACCTGCTT+TGG + chr5_1:8320781-8320800 Msa0715330:CDS 45.0%
GCTCCTGTATGCCAAGTTTA+TGG + chr5_1:8320803-8320822 Msa0715330:CDS 45.0%
! TCGTCAATGGTGTTGAACAG+AGG + chr5_1:8320909-8320928 Msa0715330:CDS 45.0%
TACAGAGCAGTTTGCAAGAC+TGG - chr5_1:8321421-8321440 None:intergenic 45.0%
CTTTGTGATGTGGAGCCATA+TGG + chr5_1:8322434-8322453 Msa0715330:intron 45.0%
!! ATCTCTCAAGTTGGTCCTCA+AGG + chr5_1:8322501-8322520 Msa0715330:intron 45.0%
!! TCTCTCAAGTTGGTCCTCAA+GGG + chr5_1:8322502-8322521 Msa0715330:intron 45.0%
AATGGTCCACATCATTCCCT+GGG - chr5_1:8322927-8322946 None:intergenic 45.0%
AAATGGTCCACATCATTCCC+TGG - chr5_1:8322928-8322947 None:intergenic 45.0%
! GTGTGTGTACTTAAGGCACT+AGG + chr5_1:8323226-8323245 Msa0715330:intron 45.0%
AAACTAGGCAAAACCACACC+AGG + chr5_1:8323447-8323466 Msa0715330:intron 45.0%
AACTAGGCAAAACCACACCA+GGG + chr5_1:8323448-8323467 Msa0715330:intron 45.0%
TTAAGCCAGAACTGCATCAG+GGG - chr5_1:8323746-8323765 None:intergenic 45.0%
GTTAAGCCAGAACTGCATCA+GGG - chr5_1:8323747-8323766 None:intergenic 45.0%
TGTTAAGCCAGAACTGCATC+AGG - chr5_1:8323748-8323767 None:intergenic 45.0%
CTAGTTGAGGGCTGCAAATT+GGG - chr5_1:8324039-8324058 None:intergenic 45.0%
TCTAGTTGAGGGCTGCAAAT+TGG - chr5_1:8324040-8324059 None:intergenic 45.0%
AATTCGTGTCCATGTGTAGC+GGG - chr5_1:8324067-8324086 None:intergenic 45.0%
!! CTGATGGATTTCCTGCTGTT+TGG - chr5_1:8324141-8324160 None:intergenic 45.0%
!! AAAGTACTGGCAGTAGCTGA+TGG - chr5_1:8324157-8324176 None:intergenic 45.0%
! GATGTCCCGGAAAAAAGTAC+TGG - chr5_1:8324170-8324189 None:intergenic 45.0%
TTCGCAGAGCTTGTCATCAA+AGG - chr5_1:8324229-8324248 None:intergenic 45.0%
GTCTTCTAACCTTCAAAGGG+TGG + chr5_1:8324342-8324361 Msa0715330:CDS 45.0%
TTTGCTTCTCCACCCTTTGA+AGG - chr5_1:8324354-8324373 None:intergenic 45.0%
ACAGGTGCAATATGGCCTAT+TGG + chr5_1:8324680-8324699 Msa0715330:three_prime_UTR 45.0%
!! TTTATATCTAAAAAAATAAA+GGG - chr5_1:8323506-8323525 None:intergenic 5.0%
!!! TTTTATATCTAAAAAAATAA+AGG - chr5_1:8323507-8323526 None:intergenic 5.0%
GGACTTGGGATTTCCTATGG+AGG + chr5_1:8320457-8320476 Msa0715330:CDS 50.0%
ACAGTCCTAGAAGCCTCCAT+AGG - chr5_1:8320473-8320492 None:intergenic 50.0%
TCAGACATCTAGCTGTGAGC+TGG + chr5_1:8320505-8320524 Msa0715330:CDS 50.0%
! AGCAGGTAAGCTAGAAGTGC+GGG - chr5_1:8320780-8320799 None:intergenic 50.0%
CGTCGAACTCAGTTACCAGA+TGG - chr5_1:8321495-8321514 None:intergenic 50.0%
CTGGTAACTGAGTTCGACGA+TGG + chr5_1:8321496-8321515 Msa0715330:CDS 50.0%
TGTGGAACAACGTTCCCATC+GGG - chr5_1:8323868-8323887 None:intergenic 50.0%
GTGTGGAACAACGTTCCCAT+CGG - chr5_1:8323869-8323888 None:intergenic 50.0%
! TAGCGGGCACTTCTAGTTGA+GGG - chr5_1:8324051-8324070 None:intergenic 50.0%
CTGACAGAAGAGAGAGAGCA+TGG - chr5_1:8324096-8324115 None:intergenic 50.0%
AATCTGTCGCACCAAACAGC+AGG + chr5_1:8324127-8324146 Msa0715330:CDS 50.0%
TATCTTGAGTGCGGATGTCC+CGG - chr5_1:8324183-8324202 None:intergenic 50.0%
GACATCCGCACTCAAGATAG+AGG + chr5_1:8324184-8324203 Msa0715330:CDS 50.0%
!! GAGGCTTCTAGGACTGTTCG+TGG + chr5_1:8320476-8320495 Msa0715330:CDS 55.0%
! GCTAGAAGTGCGGGATCTCT+TGG - chr5_1:8320771-8320790 None:intergenic 55.0%
TGGCATACAGGAGCCAAAGC+AGG - chr5_1:8320797-8320816 None:intergenic 55.0%
!! GGTTTTGTCAGCAGTGCAGC+AGG + chr5_1:8320930-8320949 Msa0715330:CDS 55.0%
ATGGTAAGCGCAGTTGTCGC+AGG + chr5_1:8321515-8321534 Msa0715330:CDS 55.0%
TGTGGTCCCAGGGAATGATG+TGG + chr5_1:8322918-8322937 Msa0715330:intron 55.0%
AAGGACCCCTGATGCAGTTC+TGG + chr5_1:8323738-8323757 Msa0715330:intron 55.0%
!! GTAGCGGGCACTTCTAGTTG+AGG - chr5_1:8324052-8324071 None:intergenic 55.0%
!! CTAGAAGTGCCCGCTACACA+TGG + chr5_1:8324055-8324074 Msa0715330:CDS 55.0%
GGTCGCCTCTATCTTGAGTG+CGG - chr5_1:8324192-8324211 None:intergenic 55.0%
AGTTGTCGCAGGCGTCTAGC+TGG + chr5_1:8321526-8321545 Msa0715330:CDS 60.0%
!! CTGGACACAATGAGCGCCGA+AGG + chr5_1:8321545-8321564 Msa0715330:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8319914 8324805 8319914 ID=Msa0715330;Name=Msa0715330
chr5_1 mRNA 8319914 8324805 8319914 ID=Msa0715330-mRNA-1;Parent=Msa0715330;Name=Msa0715330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=358|1|1|1|1|1|3|376|437
chr5_1 exon 8319914 8320951 8319914 ID=Msa0715330-mRNA-1:exon:3456;Parent=Msa0715330-mRNA-1
chr5_1 exon 8321489 8321625 8321489 ID=Msa0715330-mRNA-1:exon:3457;Parent=Msa0715330-mRNA-1
chr5_1 exon 8323933 8324805 8323933 ID=Msa0715330-mRNA-1:exon:3458;Parent=Msa0715330-mRNA-1
chr5_1 five_prime_UTR 8319914 8320271 8319914 ID=Msa0715330-mRNA-1:five_prime_utr;Parent=Msa0715330-mRNA-1
chr5_1 CDS 8320272 8320951 8320272 ID=Msa0715330-mRNA-1:cds;Parent=Msa0715330-mRNA-1
chr5_1 CDS 8321489 8321625 8321489 ID=Msa0715330-mRNA-1:cds;Parent=Msa0715330-mRNA-1
chr5_1 CDS 8323933 8324429 8323933 ID=Msa0715330-mRNA-1:cds;Parent=Msa0715330-mRNA-1
chr5_1 three_prime_UTR 8324430 8324805 8324430 ID=Msa0715330-mRNA-1:three_prime_utr;Parent=Msa0715330-mRNA-1
Gene Sequence

>Msa0715330

ATGGAATCTTGGAGTTATATCCCTGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTAGAAAACCCTTAGTTGAATGGGAAAACAAATCTTCATGTAACTTTGAACGAGACGGTTTTAATTCAGATAGAGAGGTAGTTAAAAGTATGGAATTTGTGGACTTGGGATTTCCTATGGAGGCTTCTAGGACTGTTCGTGGTTCGGTTCAGACATCTAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGAGAATTCCTCTATCCATGTTATTGCTTTTGATTCATCTTTTGCGGAAGAAGATTCCGAGTCAAAGCATTTAAGTTCTCTAGTTGAGTCGAAAAATCATGATTCTTCATTGATTGATTTGAAGCTAGGGAGATTAGTAGATTGTCAAGGTGTGGGGAGTGATAGAGATGCAAAAACATTCGCTTCTGAATCTATGCCGATTCATCAAAGCGTGTTAGCCAAGAGATCCCGCACTTCTAGCTTACCTGCTTTGGCTCCTGTATGCCAAGTTTATGGTTGTAGCATGGATCTTAGCTCCTCGAAAGATTACCACAAAAGGCATAAAGTTTGTGACGTTCACTCCAAGACAGCTAAAGTTATCGTCAATGGTGTTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATCTGGTAACTGAGTTCGACGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCTGGACACAATGAGCGCCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAACAACTTTTCCTTTCAAGACATATTTCAAAGTGGAATCCTTTTCCCAGAAAAGCATGATCAAATCTCTCAAAGTGGACATATCAAACTGGAAGAGGACCCAATTTGCAGCCCTCAACTAGAAGTGCCCGCTACACATGGACACGAATTATCTAGCCATGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCTGTCGCACCAAACAGCAGGAAATCCATCAGCTACTGCCAGTACTTTTTTCCGGGACATCCGCACTCAAGATAGAGGCGACCAAGTTTCTGAAACACCTTTGATGACAAGCTCTGCGAATAAACATGAACGAAATGAGTCTTTTCCATGTGGGATAAACTCTAAGGAAATTATTAAATCTGAACATGGTGCCACTGTTGATCTGTTTCAATTGTCTTCTAACCTTCAAAGGGTGGAGAAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAAAATTGCTGTTTCTCAAATGTGTAA
Protein sequence

>Msa0715330

MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPLVEWENKSSCNFERDGFNSDREVVKSMEFVDLGFPMEASRTVRGSVQTSSCELDSNNSSKRENSSIHVIAFDSSFAEEDSESKHLSSLVESKNHDSSLIDLKLGRLVDCQGVGSDRDAKTFASESMPIHQSVLAKRSRTSSLPALAPVCQVYGCSMDLSSSKDYHKRHKVCDVHSKTAKVIVNGVEQRFCQQCSRFHLVTEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTNNFSFQDIFQSGILFPEKHDQISQSGHIKLEEDPICSPQLEVPATHGHELSSHALSLLSAQSQNLSHQTAGNPSATASTFFRDIRTQDRGDQVSETPLMTSSANKHERNESFPCGINSKEIIKSEHGATVDLFQLSSNLQRVEKQRNSVLVKWENENCCFSNV*